ID GB_ACC SPOT_ID Species.Scientific.Name Annotation.Date Sequence.Type Sequence.Source Target.Description Representative.Public.ID Gene.Title Gene.Symbol ENTREZ_GENE_ID RefSeq.Transcript.ID Gene.Ontology.Biological.Process Gene.Ontology.Cellular.Component Gene.Ontology.Molecular.Function logFC AveExpr t P.Value adj.P.Val B
206211_at 206211_at NM_000450 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000450.1 /DEF=Homo sapiens selectin E (endothelial adhesion molecule 1) (SELE), mRNA. /FEA=mRNA /GEN=SELE /PROD=selectin E precursor /DB_XREF=gi:4506870 /UG=Hs.89546 selectin E (endothelial adhesion molecule 1) /FL=gb:M30640.1 gb:NM_000450.1 gb:M24736.1 NM_000450 selectin E SELE 6401 NM_000450 0002092 // positive regulation of receptor internalization // inferred from direct assay /// 0002523 // leukocyte migration involved in inflammatory response // traceable author statement /// 0002687 // positive regulation of leukocyte migration // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from mutant phenotype /// 0007159 // leukocyte cell-cell adhesion // inferred from direct assay /// 0007202 // activation of phospholipase C activity // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement /// 0030029 // actin filament-based process // inferred from direct assay /// 0032496 // response to lipopolysaccharide // traceable author statement /// 0034097 // response to cytokine // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // traceable author statement /// 0050727 // regulation of inflammatory response // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0050901 // leukocyte tethering or rolling // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0005905 // coated pit // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004888 // transmembrane signaling receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0033691 // sialic acid binding // inferred from direct assay /// 0043274 // phospholipase binding // inferred from direct assay /// 0070492 // oligosaccharide binding // inferred from direct assay -2894.10 1511.50 -50.05 0.00 0.00 -4.41
215223_s_at 215223_s_at W46388 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W46388 /FEA=EST /DB_XREF=gi:1331076 /DB_XREF=est:zc32c08.s1 /CLONE=IMAGE:324014 /UG=Hs.318885 superoxide dismutase 2, mitochondrial W46388 uncharacterized LOC100129518 /// superoxide dismutase 2, mitochondrial LOC100129518 /// SOD2 6648 /// 100129518 NM_000636 /// NM_001024465 /// NM_001024466 /// NR_037166 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000303 // response to superoxide // inferred from mutant phenotype /// 0001306 // age-dependent response to oxidative stress // inferred from electronic annotation /// 0001315 // age-dependent response to reactive oxygen species // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from electronic annotation /// 0003032 // detection of oxygen // inferred from electronic annotation /// 0003069 // vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006801 // superoxide metabolic process // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010042 // response to manganese ion // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010269 // response to selenium ion // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032364 // oxygen homeostasis // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033591 // response to L-ascorbic acid // inferred from electronic annotation /// 0034021 // response to silicon dioxide // inferred from electronic annotation /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048773 // erythrophore differentiation // inferred from electronic annotation /// 0050665 // hydrogen peroxide biosynthetic process // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from physical interaction /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071361 // cellular response to ethanol // inferred from electronic annotation /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0030145 // manganese ion binding // traceable author statement /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -1308.25 697.10 -36.38 0.00 0.00 -4.41
212689_s_at 212689_s_at AA524505 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA524505 /FEA=EST /DB_XREF=gi:2265433 /DB_XREF=est:ng43g12.s1 /CLONE=IMAGE:937606 /UG=Hs.321707 KIAA0742 protein AA524505 lysine (K)-specific demethylase 3A KDM3A 55818 NM_001146688 /// NM_018433 /// XM_006712051 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007290 // spermatid nucleus elongation // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // inferred from direct assay /// 0033169 // histone H3-K9 demethylation // inferred from direct assay /// 0036123 // histone H3-K9 dimethylation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046293 // formaldehyde biosynthetic process // inferred from direct assay /// 0051573 // negative regulation of histone H3-K9 methylation // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0001047 // core promoter binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from direct assay /// 0051213 // dioxygenase activity // inferred from electronic annotation -600.35 388.28 -32.94 0.00 0.00 -4.41
209545_s_at 209545_s_at AF064824 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF064824.1 /DEF=Homo sapiens CARD-containing ICE associated kinase mRNA, complete cds. /FEA=mRNA /PROD=CARD-containing ICE associated kinase /DB_XREF=gi:3290171 /UG=Hs.103755 receptor-interacting serine-threonine kinase 2 /FL=gb:BC004553.1 gb:AF027706.1 gb:AF064824.1 gb:AF078530.1 gb:NM_003821.1 AF064824 receptor-interacting serine-threonine kinase 2 RIPK2 8767 NM_003821 /// XM_005251092 0000187 // activation of MAPK activity // traceable author statement /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002250 // adaptive immune response // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from sequence or structural similarity /// 0007254 // JNK cascade // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from mutant phenotype /// 0031398 // positive regulation of protein ubiquitination // non-traceable author statement /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032727 // positive regulation of interferon-alpha production // non-traceable author statement /// 0032728 // positive regulation of interferon-beta production // non-traceable author statement /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // non-traceable author statement /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0033091 // positive regulation of immature T cell proliferation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034134 // toll-like receptor 2 signaling pathway // inferred from direct assay /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0045087 // innate immune response // inferred from direct assay /// 0045087 // innate immune response // inferred from sequence or structural similarity /// 0045087 // innate immune response // traceable author statement /// 0045627 // positive regulation of T-helper 1 cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070427 // nucleotide-binding oligomerization domain containing 1 signaling pathway // inferred from electronic annotation /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070671 // response to interleukin-12 // inferred from electronic annotation /// 0070673 // response to interleukin-18 // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071223 // cellular response to lipoteichoic acid // inferred from electronic annotation /// 0071224 // cellular response to peptidoglycan // inferred from electronic annotation /// 0071225 // cellular response to muramyl dipeptide // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030274 // LIM domain binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0050700 // CARD domain binding // inferred from direct assay /// 0050700 // CARD domain binding // inferred from physical interaction -682.78 467.89 -29.65 0.00 0.00 -4.41
201998_at 201998_at AI743792 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI743792 /FEA=EST /DB_XREF=gi:5112080 /DB_XREF=est:wg53h11.x1 /CLONE=IMAGE:2368869 /UG=Hs.2554 sialyltransferase 1 (beta-galactoside alpha-2,6-sialytransferase) /FL=gb:NM_003032.1 AI743792 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 ST6GAL1 6480 NM_003032 /// NM_173216 /// NM_173217 /// XM_005247717 /// XM_005247719 /// XM_005247720 /// XM_006713734 0006054 // N-acetylneuraminate metabolic process // inferred from direct assay /// 0006464 // cellular protein modification process // non-traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006959 // humoral immune response // traceable author statement /// 0016266 // O-glycan processing // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // inferred from direct assay /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0097503 // sialylation // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003835 // beta-galactoside alpha-2,6-sialyltransferase activity // inferred from direct assay /// 0008373 // sialyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -1167.93 772.64 -28.71 0.00 0.00 -4.41
211506_s_at 211506_s_at AF043337 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF043337.1 /DEF=Homo sapiens interleukin 8 C-terminal variant (IL8) mRNA, complete cds. /FEA=mRNA /GEN=IL8 /PROD=interleukin 8 C-terminal variant /DB_XREF=gi:12641914 /UG=Hs.624 interleukin 8 /FL=gb:AF043337.1 AF043337 chemokine (C-X-C motif) ligand 8 CXCL8 3576 NM_000584 0001525 // angiogenesis // traceable author statement /// 0002237 // response to molecule of bacterial origin // inferred from direct assay /// 0006928 // cellular component movement // traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement /// 0030155 // regulation of cell adhesion // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from genetic interaction /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031623 // receptor internalization // inferred from direct assay /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0042119 // neutrophil activation // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from expression pattern /// 0045091 // regulation of single stranded viral RNA replication via double stranded DNA intermediate // inferred from direct assay /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0048566 // embryonic digestive tract development // inferred from expression pattern /// 0050930 // induction of positive chemotaxis // inferred from genetic interaction /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0090023 // positive regulation of neutrophil chemotaxis // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005153 // interleukin-8 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008009 // chemokine activity // traceable author statement -2875.30 1518.22 -28.64 0.00 0.00 -4.41
200768_s_at 200768_s_at BC001686 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001686.1 /DEF=Homo sapiens, methionine adenosyltransferase II, alpha, clone MGC:2907, mRNA, complete cds. /FEA=mRNA /PROD=methionine adenosyltransferase II, alpha /DB_XREF=gi:12804546 /UG=Hs.77502 methionine adenosyltransferase II, alpha /FL=gb:BC001686.1 gb:BC001854.1 gb:NM_005911.1 BC001686 methionine adenosyltransferase II, alpha MAT2A 4144 NM_005911 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from direct assay /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0032259 // methylation // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0048269 // methionine adenosyltransferase complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004478 // methionine adenosyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 639.15 415.73 27.70 0.00 0.00 -4.41
210592_s_at 210592_s_at M55580 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M55580.1 /DEF=Human spermidinespermine N1-acetyltransferase mRNA, complete cds. /FEA=mRNA /GEN=spermidinespermine N1-acetyltransferase /PROD=spermidinespermine N1-acetyltransferase /DB_XREF=gi:338335 /UG=Hs.28491 spermidinespermine N1-acetyltransferase /FL=gb:M55580.1 M55580 spermidine/spermine N1-acetyltransferase 1 SAT1 6303 NM_002970 /// NR_027783 0001525 // angiogenesis // inferred from expression pattern /// 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // traceable author statement /// 0006598 // polyamine catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009447 // putrescine catabolic process // inferred from electronic annotation /// 0032918 // spermidine acetylation // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004145 // diamine N-acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019809 // spermidine binding // inferred from electronic annotation -1205.95 1152.20 -26.78 0.00 0.00 -4.41
202638_s_at 202638_s_at NM_000201 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000201.1 /DEF=Homo sapiens intercellular adhesion molecule 1 (CD54), human rhinovirus receptor (ICAM1), mRNA. /FEA=mRNA /GEN=ICAM1 /PROD=intercellular adhesion molecule 1 precursor /DB_XREF=gi:4557877 /UG=Hs.168383 intercellular adhesion molecule 1 (CD54), human rhinovirus receptor /FL=gb:M24283.1 gb:J03132.1 gb:NM_000201.1 NM_000201 intercellular adhesion molecule 1 ICAM1 3383 NM_000201 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001910 // regulation of leukocyte mediated cytotoxicity // traceable author statement /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0002291 // T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell // inferred from mutant phenotype /// 0002457 // T cell antigen processing and presentation // inferred from electronic annotation /// 0002693 // positive regulation of cellular extravasation // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from direct assay /// 0007157 // heterophilic cell-cell adhesion // traceable author statement /// 0007159 // leukocyte cell-cell adhesion // inferred from mutant phenotype /// 0007569 // cell aging // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0010477 // response to sulfur dioxide // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0022614 // membrane to membrane docking // inferred from expression pattern /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0034698 // response to gonadotropin // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0044406 // adhesion of symbiont to host // inferred from direct assay /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from electronic annotation /// 0046813 // receptor-mediated virion attachment to host cell // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050776 // regulation of immune response // traceable author statement /// 0050900 // leukocyte migration // inferred from expression pattern /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051926 // negative regulation of calcium ion transport // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0061028 // establishment of endothelial barrier // inferred from genetic interaction /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0071312 // cellular response to alkaloid // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071347 // cellular response to interleukin-1 // inferred from electronic annotation /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay 0001772 // immunological synapse // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005178 // integrin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation -2124.85 1127.62 -26.26 0.00 0.00 -4.41
217678_at 217678_at AA488687 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA488687 /FEA=EST /DB_XREF=gi:2216118 /DB_XREF=est:ab38f03.s1 /CLONE=IMAGE:843101 /UG=Hs.284235 ESTs AA488687 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 SLC7A11 23657 NM_014331 /// XM_005262875 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009636 // response to toxic substance // inferred from direct assay /// 0015813 // L-glutamate transport // traceable author statement /// 0035094 // response to nicotine // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070527 // platelet aggregation // inferred from electronic annotation 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015327 // cystine:glutamate antiporter activity // traceable author statement -473.10 596.20 -25.08 0.00 0.00 -4.41
202887_s_at 202887_s_at NM_019058 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019058.1 /DEF=Homo sapiens hypothetical protein (FLJ20500), mRNA. /FEA=mRNA /GEN=FLJ20500 /PROD=hypothetical protein /DB_XREF=gi:9506686 /UG=Hs.111244 hypothetical protein /FL=gb:AL136668.1 gb:NM_019058.1 NM_019058 DNA-damage-inducible transcript 4 DDIT4 54541 NM_019058 0001666 // response to hypoxia // inferred from direct assay /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007420 // brain development // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // inferred from sequence or structural similarity /// 0030182 // neuron differentiation // inferred from sequence or structural similarity /// 0032007 // negative regulation of TOR signaling // inferred from mutant phenotype /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from sequence or structural similarity /// 0043241 // protein complex disassembly // inferred from electronic annotation /// 0045820 // negative regulation of glycolytic process // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // inferred from sequence or structural similarity /// 0051607 // defense response to virus // inferred from electronic annotation /// 0072593 // reactive oxygen species metabolic process // inferred from electronic annotation /// 1901216 // positive regulation of neuron death // inferred from sequence or structural similarity /// 1902532 // negative regulation of intracellular signal transduction // inferred from sequence or structural similarity 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0071889 // 14-3-3 protein binding // inferred from electronic annotation -2003.15 1191.75 -25.03 0.00 0.00 -4.41
212037_at 212037_at BF508848 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF508848 /FEA=EST /DB_XREF=gi:11592146 /DB_XREF=est:UI-H-BI4-aor-e-06-0-UI.s1 /CLONE=IMAGE:3085907 /UG=Hs.44499 pinin, desmosome associated protein BF508848 pinin, desmosome associated protein PNN 5411 NM_002687 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005882 // intermediate filament // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030057 // desmosome // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005198 // structural molecule activity // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 244.80 153.38 24.59 0.00 0.00 -4.41
201976_s_at 201976_s_at NM_012334 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012334.1 /DEF=Homo sapiens myosin X (MYO10), mRNA. /FEA=mRNA /GEN=MYO10 /PROD=myosin X /DB_XREF=gi:11037056 /UG=Hs.61638 myosin X /FL=gb:NM_012334.1 gb:AF234532.1 gb:AF247457.2 NM_012334 myosin X MYO10 4651 NM_012334 /// XM_005248306 /// XM_005248307 /// XM_006714475 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0008152 // metabolic process // inferred from sequence or structural similarity /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0030705 // cytoskeleton-dependent intracellular transport // inferred from sequence or structural similarity /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051489 // regulation of filopodium assembly // inferred from mutant phenotype 0001726 // ruffle // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0031527 // filopodium membrane // inferred from electronic annotation /// 0032433 // filopodium tip // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from sequence or structural similarity /// 0030507 // spectrin binding // inferred from direct assay /// 0030898 // actin-dependent ATPase activity // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from sequence or structural similarity /// 0060002 // plus-end directed microfilament motor activity // inferred from sequence or structural similarity -447.05 698.17 -24.27 0.00 0.00 -4.41
203973_s_at 203973_s_at NM_005195 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005195.1 /DEF=Homo sapiens CCAATenhancer binding protein (CEBP), delta (CEBPD), mRNA. /FEA=mRNA /GEN=CEBPD /PROD=CCAATenhancer binding protein (CEBP), delta /DB_XREF=gi:4885130 /UG=Hs.76722 CCAATenhancer binding protein (CEBP), delta /FL=gb:M83667.1 gb:NM_005195.1 NM_005195 CCAAT/enhancer binding protein (C/EBP), delta CEBPD 1052 NM_005195 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -440.60 241.75 -23.59 0.00 0.00 -4.41
209921_at 209921_at AB040875 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB040875.1 /DEF=Homo sapiens hxCT mRNA for cystineglutamate exchanger, complete cds. /FEA=mRNA /GEN=hxCT /PROD=cystineglutamate exchanger /DB_XREF=gi:13516845 /UG=Hs.6682 solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 /FL=gb:AB040875.1 AB040875 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 SLC7A11 23657 NM_014331 /// XM_005262875 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009636 // response to toxic substance // inferred from direct assay /// 0015813 // L-glutamate transport // traceable author statement /// 0035094 // response to nicotine // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070527 // platelet aggregation // inferred from electronic annotation 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015327 // cystine:glutamate antiporter activity // traceable author statement -1101.10 1067.58 -23.43 0.00 0.00 -4.41
209239_at 209239_at M55643 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M55643.1 /DEF=Human factor KBF1 mRNA, complete cds. /FEA=mRNA /GEN=NF-kappa-B /PROD=factor KBF1 /DB_XREF=gi:189179 /UG=Hs.83428 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) /FL=gb:NM_003998.1 gb:M58603.1 gb:M55643.1 M55643 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 NFKB1 4790 NM_001165412 /// NM_003998 /// XM_005263029 /// XM_006714229 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred by curator /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001818 // negative regulation of cytokine production // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred by curator /// 0010884 // positive regulation of lipid storage // inferred by curator /// 0010956 // negative regulation of calcidiol 1-monooxygenase activity // inferred from direct assay /// 0010957 // negative regulation of vitamin D biosynthetic process // inferred by curator /// 0031293 // membrane protein intracellular domain proteolysis // traceable author statement /// 0032269 // negative regulation of cellular protein metabolic process // inferred by curator /// 0032375 // negative regulation of cholesterol transport // inferred by curator /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045083 // negative regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071316 // cellular response to nicotine // inferred from mutant phenotype /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071354 // cellular response to interleukin-6 // inferred from mutant phenotype /// 0071375 // cellular response to peptide hormone stimulus // inferred from mutant phenotype /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 1900127 // positive regulation of hyaluronan biosynthetic process // inferred from direct assay /// 2000630 // positive regulation of miRNA metabolic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0033256 // I-kappaB/NF-kappaB complex // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0000975 // regulatory region DNA binding // inferred from direct assay /// 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from direct assay /// 0001071 // nucleic acid binding transcription factor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay -403.93 401.51 -23.40 0.00 0.00 -4.41
207850_at 207850_at NM_002090 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002090.1 /DEF=Homo sapiens GRO3 oncogene (GRO3), mRNA. /FEA=mRNA /GEN=GRO3 /PROD=GRO3 oncogene /DB_XREF=gi:4504156 /UG=Hs.89690 GRO3 oncogene /FL=gb:M36821.1 gb:NM_002090.1 NM_002090 chemokine (C-X-C motif) ligand 3 CXCL3 2921 NM_002090 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0060326 // cell chemotaxis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from sequence or structural similarity -1797.10 907.27 -23.25 0.00 0.00 -4.41
201642_at 201642_at NM_005534 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005534.1 /DEF=Homo sapiens interferon gamma receptor 2 (interferon gamma transducer 1) (IFNGR2), mRNA. /FEA=mRNA /GEN=IFNGR2 /PROD=interferon gamma receptor 2 (interferon gammatransducer 1) /DB_XREF=gi:5031782 /UG=Hs.177559 interferon gamma receptor 2 (interferon gamma transducer 1) /FL=gb:BC003624.1 gb:U05875.1 gb:U05877.1 gb:NM_005534.1 NM_005534 interferon gamma receptor 2 (interferon gamma transducer 1) IFNGR2 3460 NM_005534 /// XM_005260969 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004906 // interferon-gamma receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -781.87 744.26 -23.03 0.00 0.00 -4.41
207196_s_at 207196_s_at NM_006058 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006058.1 /DEF=Homo sapiens Nef-associated factor 1 (NAF1), mRNA. /FEA=mRNA /GEN=NAF1 /PROD=Nef-associated factor 1 /DB_XREF=gi:5174608 /UG=Hs.109281 Nef-associated factor 1 /FL=gb:NM_006058.1 NM_006058 TNFAIP3 interacting protein 1 TNIP1 10318 NM_001252385 /// NM_001252386 /// NM_001252390 /// NM_001252391 /// NM_001252392 /// NM_001252393 /// NM_001258454 /// NM_001258455 /// NM_001258456 /// NM_006058 /// XM_005268355 /// XM_006714751 /// XM_006714752 0002755 // MyD88-dependent toll-like receptor signaling pathway // inferred from sequence or structural similarity /// 0006412 // translation // traceable author statement /// 0006952 // defense response // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from mutant phenotype /// 0009101 // glycoprotein biosynthetic process // inferred from direct assay /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0050729 // positive regulation of inflammatory response // inferred from sequence or structural similarity /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0085032 // modulation by symbiont of host I-kappaB kinase/NF-kappaB cascade // inferred from direct assay 0005622 // intracellular // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0051019 // mitogen-activated protein kinase binding // inferred from direct assay -772.35 529.98 -22.82 0.00 0.00 -4.41
207426_s_at 207426_s_at NM_003326 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003326.1 /DEF=Homo sapiens tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kD) (TNFSF4), mRNA. /FEA=mRNA /GEN=TNFSF4 /PROD=tumor necrosis factor (ligand) superfamily,member 4 (tax-transcriptionally activated glycoprotein 1,34kD) /DB_XREF=gi:4507602 /UG=Hs.181097 tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kD) /FL=gb:NM_003326.1 NM_003326 tumor necrosis factor (ligand) superfamily, member 4 TNFSF4 7292 NM_003326 /// XM_005245475 0001816 // cytokine production // inferred from electronic annotation /// 0002215 // defense response to nematode // inferred from sequence or structural similarity /// 0002526 // acute inflammatory response // inferred from sequence or structural similarity /// 0002726 // positive regulation of T cell cytokine production // inferred from sequence or structural similarity /// 0002819 // regulation of adaptive immune response // inferred from sequence or structural similarity /// 0002830 // positive regulation of type 2 immune response // inferred from sequence or structural similarity /// 0002891 // positive regulation of immunoglobulin mediated immune response // inferred from sequence or structural similarity /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0009615 // response to virus // inferred from sequence or structural similarity /// 0032689 // negative regulation of interferon-gamma production // inferred from sequence or structural similarity /// 0032700 // negative regulation of interleukin-17 production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032733 // positive regulation of interleukin-10 production // inferred from sequence or structural similarity /// 0032735 // positive regulation of interleukin-12 production // inferred from sequence or structural similarity /// 0032736 // positive regulation of interleukin-13 production // inferred from sequence or structural similarity /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032753 // positive regulation of interleukin-4 production // inferred from direct assay /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0035708 // interleukin-4-dependent isotype switching to IgE isotypes // inferred from electronic annotation /// 0035709 // memory T cell activation // inferred from sequence or structural similarity /// 0035712 // T-helper 2 cell activation // inferred from sequence or structural similarity /// 0035713 // response to nitrogen dioxide // inferred from sequence or structural similarity /// 0035714 // cellular response to nitrogen dioxide // inferred from electronic annotation /// 0035783 // CD4-positive, alpha-beta T cell costimulation // inferred from electronic annotation /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0042221 // response to chemical // inferred from electronic annotation /// 0043372 // positive regulation of CD4-positive, alpha-beta T cell differentiation // inferred from sequence or structural similarity /// 0043382 // positive regulation of memory T cell differentiation // inferred from sequence or structural similarity /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0045590 // negative regulation of regulatory T cell differentiation // inferred from sequence or structural similarity /// 0045626 // negative regulation of T-helper 1 cell differentiation // inferred from sequence or structural similarity /// 0045630 // positive regulation of T-helper 2 cell differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from sequence or structural similarity /// 0050710 // negative regulation of cytokine secretion // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0050729 // positive regulation of inflammatory response // inferred from direct assay /// 0050871 // positive regulation of B cell activation // inferred from sequence or structural similarity /// 0051024 // positive regulation of immunoglobulin secretion // inferred from sequence or structural similarity /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0071380 // cellular response to prostaglandin E stimulus // inferred from direct assay /// 0071954 // chemokine (C-C motif) ligand 11 production // inferred from sequence or structural similarity /// 1900281 // positive regulation of CD4-positive, alpha-beta T cell costimulation // inferred from sequence or structural similarity /// 2000525 // positive regulation of T cell costimulation // inferred from electronic annotation /// 2000568 // positive regulation of memory T cell activation // inferred from electronic annotation /// 2000570 // positive regulation of T-helper 2 cell activation // inferred from electronic annotation /// 2000572 // positive regulation of interleukin-4-dependent isotype switching to IgE isotypes // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from direct assay /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0032813 // tumor necrosis factor receptor superfamily binding // inferred from sequence or structural similarity 352.92 482.56 22.77 0.00 0.00 -4.41
202859_x_at 202859_x_at NM_000584 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000584.1 /DEF=Homo sapiens interleukin 8 (IL8), mRNA. /FEA=mRNA /GEN=IL8 /PROD=interleukin 8 /DB_XREF=gi:10834977 /UG=Hs.624 interleukin 8 /FL=gb:NM_000584.1 gb:M17017.1 gb:M26383.1 NM_000584 chemokine (C-X-C motif) ligand 8 CXCL8 3576 NM_000584 0001525 // angiogenesis // traceable author statement /// 0002237 // response to molecule of bacterial origin // inferred from direct assay /// 0006928 // cellular component movement // traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement /// 0030155 // regulation of cell adhesion // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from genetic interaction /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031623 // receptor internalization // inferred from direct assay /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0042119 // neutrophil activation // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from expression pattern /// 0045091 // regulation of single stranded viral RNA replication via double stranded DNA intermediate // inferred from direct assay /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0048566 // embryonic digestive tract development // inferred from expression pattern /// 0050930 // induction of positive chemotaxis // inferred from genetic interaction /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0090023 // positive regulation of neutrophil chemotaxis // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005153 // interleukin-8 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008009 // chemokine activity // traceable author statement -3476.58 2196.44 -22.34 0.00 0.00 -4.41
201848_s_at 201848_s_at U15174 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U15174.1 /DEF=Homo sapiens BCL2adenovirus E1B 19kD-interacting protein 3 (BNIP3) mRNA, complete cds. /FEA=mRNA /GEN=BNIP3 /PROD=BCL2adenovirus E1B 19kD-interacting protein 3 /DB_XREF=gi:558845 /UG=Hs.79428 BCL2adenovirus E1B 19kD-interacting protein 3 /FL=gb:AF002697.1 gb:U15174.1 gb:NM_004052.2 U15174 BCL2/adenovirus E1B 19kDa interacting protein 3 BNIP3 664 NM_004052 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0006309 // apoptotic DNA fragmentation // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006915 // apoptotic process // inferred from physical interaction /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008626 // granzyme-mediated apoptotic signaling pathway // inferred from direct assay /// 0010508 // positive regulation of autophagy // traceable author statement /// 0010637 // negative regulation of mitochondrial fusion // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0035694 // mitochondrial protein catabolic process // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043068 // positive regulation of programmed cell death // inferred from direct assay /// 0043243 // positive regulation of protein complex disassembly // inferred from direct assay /// 0043653 // mitochondrial fragmentation involved in apoptotic process // inferred from direct assay /// 0045837 // negative regulation of membrane potential // inferred from direct assay /// 0046902 // regulation of mitochondrial membrane permeability // inferred from direct assay /// 0048102 // autophagic cell death // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from sequence or structural similarity /// 0051607 // defense response to virus // inferred from direct assay /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071279 // cellular response to cobalt ion // inferred from mutant phenotype /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 0072593 // reactive oxygen species metabolic process // inferred from direct assay /// 0090141 // positive regulation of mitochondrial fission // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation /// 0097345 // mitochondrial outer membrane permeabilization // inferred from direct assay /// 1990144 // intrinsic apoptotic signaling pathway in response to hypoxia // inferred from mutant phenotype 0005634 // nucleus // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from direct assay /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0031307 // integral component of mitochondrial outer membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051020 // GTPase binding // inferred from physical interaction -443.10 346.12 -21.51 0.00 0.00 -4.41
202912_at 202912_at NM_001124 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001124.1 /DEF=Homo sapiens adrenomedullin (ADM), mRNA. /FEA=mRNA /GEN=ADM /PROD=adrenomedullin /DB_XREF=gi:4501944 /UG=Hs.394 adrenomedullin /FL=gb:NM_001124.1 gb:D14874.1 NM_001124 adrenomedullin ADM 133 NM_001124 0001570 // vasculogenesis // inferred from direct assay /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002031 // G-protein coupled receptor internalization // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006701 // progesterone biosynthetic process // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007267 // cell-cell signaling // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008015 // blood circulation // traceable author statement /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010460 // positive regulation of heart rate // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031102 // neuron projection regeneration // inferred from electronic annotation /// 0031623 // receptor internalization // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042594 // response to starvation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043116 // negative regulation of vascular permeability // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045906 // negative regulation of vasoconstriction // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from electronic annotation /// 0046879 // hormone secretion // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0060670 // branching involved in labyrinthine layer morphogenesis // inferred from electronic annotation /// 0060712 // spongiotrophoblast layer development // inferred from electronic annotation /// 0097084 // vascular smooth muscle cell development // inferred from electronic annotation /// 2001214 // positive regulation of vasculogenesis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031700 // adrenomedullin receptor binding // inferred from electronic annotation -562.98 560.49 -21.17 0.00 0.00 -4.41
209774_x_at 209774_x_at M57731 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M57731.1 /DEF=Human gro-beta mRNA, complete cds. /FEA=mRNA /GEN=gro-beta /PROD=cytokine gro-beta /DB_XREF=gi:183626 /UG=Hs.75765 GRO2 oncogene /FL=gb:M57731.1 gb:M36820.1 gb:NM_002089.1 M57731 chemokine (C-X-C motif) ligand 2 CXCL2 2920 NM_002089 0002237 // response to molecule of bacterial origin // inferred from direct assay /// 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060326 // cell chemotaxis // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008009 // chemokine activity // inferred from electronic annotation -1943.52 1025.91 -20.62 0.00 0.00 -4.41
202238_s_at 202238_s_at NM_006169 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006169.1 /DEF=Homo sapiens nicotinamide N-methyltransferase (NNMT), mRNA. /FEA=mRNA /GEN=NNMT /PROD=nicotinamide N-methyltransferase /DB_XREF=gi:5453789 /UG=Hs.76669 nicotinamide N-methyltransferase /FL=gb:BC000234.1 gb:U08021.1 gb:NM_006169.1 NM_006169 uncharacterized LOC101928916 /// nicotinamide N-methyltransferase LOC101928916 /// NNMT 4837 /// 101928916 NM_006169 /// XR_246479 /// XR_247717 /// XR_252975 0006805 // xenobiotic metabolic process // traceable author statement /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032259 // methylation // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0008112 // nicotinamide N-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -560.67 709.84 -20.56 0.00 0.00 -4.41
208296_x_at 208296_x_at NM_014350 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014350.1 /DEF=Homo sapiens TNF-induced protein (GG2-1), mRNA. /FEA=mRNA /GEN=GG2-1 /PROD=TNF-induced protein /DB_XREF=gi:7657123 /UG=Hs.17839 TNF-induced protein /FL=gb:AF099936.1 gb:NM_014350.1 NM_014350 tumor necrosis factor, alpha-induced protein 8 TNFAIP8 25816 NM_001077654 /// NM_001286813 /// NM_001286814 /// NM_001286815 /// NM_001286817 /// NM_014350 /// XM_006714584 0006915 // apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from mutant phenotype -189.50 138.25 -20.31 0.00 0.00 -4.41
205476_at 205476_at NM_004591 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004591.1 /DEF=Homo sapiens small inducible cytokine subfamily A (Cys-Cys), member 20 (SCYA20), mRNA. /FEA=mRNA /GEN=SCYA20 /PROD=small inducible cytokine subfamily A (Cys-Cys),member 20 /DB_XREF=gi:4759075 /UG=Hs.75498 small inducible cytokine subfamily A (Cys-Cys), member 20 /FL=gb:U64197.1 gb:U77035.1 gb:D86955.1 gb:NM_004591.1 NM_004591 chemokine (C-C motif) ligand 20 CCL20 6364 NM_001130046 /// NM_004591 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0042466 // chemokinesis // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060326 // cell chemotaxis // traceable author statement /// 2000406 // positive regulation of T cell migration // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008009 // chemokine activity // inferred from electronic annotation -1614.83 811.34 -19.97 0.00 0.00 -4.41
216598_s_at 216598_s_at S69738 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S69738.1 /DEF=MCP-1=monocyte chemotactic protein human, aortic endothelial cells, mRNA, 661 nt. /FEA=mRNA /GEN=MCP-1 /PROD=MCP-1 /DB_XREF=gi:545464 /UG=Hs.303649 small inducible cytokine A2 (monocyte chemotactic protein 1, homologous to mouse Sig-je) S69738 chemokine (C-C motif) ligand 2 CCL2 6347 NM_002982 0000165 // MAPK cascade // inferred from mutant phenotype /// 0001525 // angiogenesis // traceable author statement /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0002548 // monocyte chemotaxis // inferred from direct assay /// 0006468 // protein phosphorylation // traceable author statement /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0006959 // humoral immune response // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0007155 // cell adhesion // traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007187 // G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger // traceable author statement /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from direct assay /// 0009408 // response to heat // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from expression pattern /// 0009887 // organ morphogenesis // traceable author statement /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010574 // regulation of vascular endothelial growth factor production // inferred from electronic annotation /// 0010759 // positive regulation of macrophage chemotaxis // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0019079 // viral genome replication // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0019725 // cellular homeostasis // traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0033552 // response to vitamin B3 // inferred from electronic annotation /// 0034351 // negative regulation of glial cell apoptotic process // inferred from direct assay /// 0035684 // helper T cell extravasation // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptotic process // inferred from direct assay /// 0043615 // astrocyte cell migration // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048246 // macrophage chemotaxis // inferred from direct assay /// 0048247 // lymphocyte chemotaxis // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // inferred from sequence or structural similarity /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // inferred from sequence or structural similarity /// 0060137 // maternal process involved in parturition // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from sequence or structural similarity /// 0071346 // cellular response to interferon-gamma // inferred from expression pattern /// 0071346 // cellular response to interferon-gamma // inferred from sequence or structural similarity /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from sequence or structural similarity /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from sequence or structural similarity /// 0071407 // cellular response to organic cyclic compound // inferred from direct assay /// 0090265 // positive regulation of immune complex clearance by monocytes and macrophages // inferred from electronic annotation /// 0090280 // positive regulation of calcium ion import // inferred from direct assay /// 2000427 // positive regulation of apoptotic cell clearance // inferred from sequence or structural similarity /// 2000502 // negative regulation of natural killer cell chemotaxis // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0001664 // G-protein coupled receptor binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0031727 // CCR2 chemokine receptor binding // inferred from sequence or structural similarity /// 0031727 // CCR2 chemokine receptor binding // traceable author statement -3430.97 2033.41 -19.92 0.00 0.00 -4.41
211628_x_at 211628_x_at J04755 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J04755.1 /DEF=Human ferritin H processed pseudogene, complete cds. /FEA=mRNA /GEN=FTHP1 /DB_XREF=gi:182512 /FL=gb:J04755.1 J04755 ferritin, heavy polypeptide 1 pseudogene 5 FTH1P5 2509 -1794.85 3127.97 -19.77 0.00 0.00 -4.41
218880_at 218880_at N36408 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N36408 /FEA=EST /DB_XREF=gi:1157550 /DB_XREF=est:yy33f03.s1 /CLONE=IMAGE:273053 /UG=Hs.325364 hypothetical protein FLJ23306 /FL=gb:NM_024530.1 N36408 FOS-like antigen 2 FOSL2 2355 NM_005253 /// XM_005264231 /// XM_006711976 /// XM_006711977 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008219 // cell death // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -284.22 219.21 -19.71 0.00 0.00 -4.41
201761_at 201761_at NM_006636 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006636.2 /DEF=Homo sapiens methylene tetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase (MTHFD2), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=MTHFD2 /PROD=methylene tetrahydrofolate dehydrogenase (NAD+dependent), methenyltetrahydrofolate cyclohydrolase,precursor /DB_XREF=gi:13699869 /UG=Hs.154672 methylene tetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase /FL=gb:NM_006636.2 NM_006636 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase MTHFD2 10797 NM_001040409 /// NM_006636 /// NR_027405 /// XM_006711924 0006730 // one-carbon metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009396 // folic acid-containing compound biosynthetic process // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0046653 // tetrahydrofolate metabolic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004329 // formate-tetrahydrofolate ligase activity // not recorded /// 0004477 // methenyltetrahydrofolate cyclohydrolase activity // not recorded /// 0004477 // methenyltetrahydrofolate cyclohydrolase activity // inferred from sequence or structural similarity /// 0004487 // methylenetetrahydrofolate dehydrogenase (NAD+) activity // inferred from direct assay /// 0004488 // methylenetetrahydrofolate dehydrogenase (NADP+) activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042301 // phosphate ion binding // inferred from direct assay -530.62 562.61 -19.67 0.00 0.00 -4.41
201195_s_at 201195_s_at AB018009 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB018009.1 /DEF=Homo sapiens mRNA for L-type amino acid transporter 1, complete cds. /FEA=mRNA /GEN=hLAT1 /PROD=L-type amino acid transporter 1 /DB_XREF=gi:5926731 /UG=Hs.184601 solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 /FL=gb:AF077866.1 gb:AB018542.1 gb:AF104032.1 gb:NM_003486.1 gb:AB017908.1 gb:AB018009.1 AB018009 solute carrier family 7 (amino acid transporter light chain, L system), member 5 SLC7A5 8140 NM_003486 /// XM_006721286 /// XM_006721287 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015804 // neutral amino acid transport // inferred from sequence or structural similarity /// 0015807 // L-amino acid transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 1902475 // L-alpha-amino acid transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015175 // neutral amino acid transmembrane transporter activity // traceable author statement /// 0015179 // L-amino acid transmembrane transporter activity // inferred from electronic annotation /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity -323.35 317.75 -19.62 0.00 0.00 -4.41
200799_at 200799_at NM_005345 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005345.3 /DEF=Homo sapiens heat shock 70kD protein 1A (HSPA1A), mRNA. /FEA=mRNA /GEN=HSPA1A /PROD=heat shock 70kD protein 1A /DB_XREF=gi:5579469 /UG=Hs.8997 heat shock 70kD protein 1A /FL=gb:BC002453.1 gb:NM_005345.3 NM_005345 heat shock 70kDa protein 1A /// heat shock 70kDa protein 1B HSPA1A /// HSPA1B 3303 /// 3304 NM_005345 /// NM_005346 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006402 // mRNA catabolic process // inferred from direct assay /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009615 // response to virus // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010941 // regulation of cell death // inferred from mutant phenotype /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0034605 // cellular response to heat // inferred from direct assay /// 0042026 // protein refolding // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045648 // positive regulation of erythrocyte differentiation // inferred from mutant phenotype /// 0060548 // negative regulation of cell death // inferred from mutant phenotype /// 0070370 // cellular heat acclimation // inferred from mutant phenotype /// 0090084 // negative regulation of inclusion body assembly // inferred from direct assay /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // traceable author statement /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005814 // centriole // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016234 // inclusion body // inferred from direct assay /// 0016235 // aggresome // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001618 // virus receptor activity // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042623 // ATPase activity, coupled // inferred from direct assay /// 0044183 // protein binding involved in protein folding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement 414.57 321.54 19.46 0.00 0.00 -4.41
208687_x_at 208687_x_at AF352832 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF352832.1 /DEF=Homo sapiens constitutive heat shock protein 70 (HSC70) mRNA, complete cds. /FEA=mRNA /GEN=HSC70 /PROD=constitutive heat shock protein 70 /DB_XREF=gi:13273303 /UG=Hs.180414 heat shock 70kD protein 8 /FL=gb:AF352832.1 gb:NM_006597.1 AF352832 heat shock 70kDa protein 8 /// small nucleolar RNA, C/D box 14C /// small nucleolar RNA, C/D box 14D HSPA8 /// SNORD14C /// SNORD14D 3312 /// 85389 /// 85390 NM_006597 /// NM_153201 /// NR_001453 /// NR_001454 /// XM_006718831 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006457 // protein folding // non-traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042026 // protein refolding // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 1902904 // negative regulation of fibril organization // inferred from direct assay 0000974 // Prp19 complex // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0061202 // clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0042623 // ATPase activity, coupled // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay 1440.70 1466.35 19.06 0.00 0.00 -4.41
203323_at 203323_at BF197655 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF197655 /FEA=EST /DB_XREF=gi:11086950 /DB_XREF=est:7m95b04.x1 /CLONE=IMAGE:3562710 /UG=Hs.139851 caveolin 2 /FL=gb:BC005256.1 gb:AF035752.1 gb:NM_001233.1 BF197655 caveolin 2 CAV2 858 NM_001206747 /// NM_001206748 /// NM_001233 /// NM_198212 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006906 // vesicle fusion // inferred from direct assay /// 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007088 // regulation of mitosis // inferred from expression pattern /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0016050 // vesicle organization // inferred from direct assay /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0048278 // vesicle docking // inferred from direct assay /// 0048741 // skeletal muscle fiber development // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from mutant phenotype /// 0070836 // caveola assembly // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0002080 // acrosomal membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030133 // transport vesicle // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000149 // SNARE binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0031748 // D1 dopamine receptor binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from electronic annotation 306.00 374.97 18.63 0.00 0.00 -4.41
202014_at 202014_at NM_014330 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014330.2 /DEF=Homo sapiens growth arrest and DNA-damage-inducible 34 (GADD34), mRNA. /FEA=mRNA /GEN=GADD34 /PROD=growth arrest and DNA-damage-inducible 34 /DB_XREF=gi:9790902 /UG=Hs.76556 growth arrest and DNA-damage-inducible 34 /FL=gb:BC003067.1 gb:U83981.1 gb:NM_014330.2 NM_014330 protein phosphatase 1, regulatory subunit 15A PPP1R15A 23645 NM_014330 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // traceable author statement /// 0007050 // cell cycle arrest // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction -294.35 269.12 -18.52 0.00 0.00 -4.41
207528_s_at 207528_s_at NM_014331 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014331.1 /DEF=Homo sapiens solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 (SLC7A11), mRNA. /FEA=mRNA /GEN=SLC7A11 /PROD=solute carrier family 7, (cationic amino acidtransporter, y+ system) member 11 /DB_XREF=gi:7657682 /UG=Hs.6682 solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 /FL=gb:AF200708.1 gb:AB026891.1 gb:NM_014331.1 NM_014331 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 SLC7A11 23657 NM_014331 /// XM_005262875 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009636 // response to toxic substance // inferred from direct assay /// 0015813 // L-glutamate transport // traceable author statement /// 0035094 // response to nicotine // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070527 // platelet aggregation // inferred from electronic annotation 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015327 // cystine:glutamate antiporter activity // traceable author statement -685.12 476.69 -18.48 0.00 0.00 -4.41
207526_s_at 207526_s_at NM_003856 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003856.1 /DEF=Homo sapiens interleukin 1 receptor-like 1 (IL1RL1), mRNA. /FEA=mRNA /GEN=IL1RL1 /PROD=interleukin 1 receptor-like 1 /DB_XREF=gi:4507244 /UG=Hs.66 interleukin 1 receptor-like 1 /FL=gb:NM_003856.1 NM_003856 interleukin 1 receptor-like 1 IL1RL1 9173 NM_001282408 /// NM_003856 /// NM_016232 /// NM_173459 /// NR_104167 /// XM_006712839 0002826 // negative regulation of T-helper 1 type immune response // inferred from electronic annotation /// 0006955 // immune response // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0032689 // negative regulation of interferon-gamma production // inferred from electronic annotation /// 0032754 // positive regulation of interleukin-5 production // inferred from electronic annotation /// 0035556 // intracellular signal transduction // traceable author statement /// 0038172 // interleukin-33-mediated signaling pathway // inferred from electronic annotation /// 0043032 // positive regulation of macrophage activation // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0090197 // positive regulation of chemokine secretion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0002113 // interleukin-33 binding // inferred from electronic annotation /// 0002114 // interleukin-33 receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // traceable author statement /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -783.77 944.49 -18.45 0.00 0.00 -4.41
206336_at 206336_at NM_002993 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002993.1 /DEF=Homo sapiens small inducible cytokine subfamily B (Cys-X-Cys), member 6 (granulocyte chemotactic protein 2) (SCYB6), mRNA. /FEA=mRNA /GEN=SCYB6 /PROD=small inducible cytokine subfamily B(Cys-X-Cys), member 6 (granulocyte chemotactic protein 2) /DB_XREF=gi:4506850 /UG=Hs.164021 small inducible cytokine subfamily B (Cys-X-Cys), member 6 (granulocyte chemotactic protein 2) /FL=gb:U81234.1 gb:NM_002993.1 NM_002993 chemokine (C-X-C motif) ligand 6 CXCL6 6372 NM_002993 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060326 // cell chemotaxis // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation -531.40 288.77 -18.17 0.00 0.00 -4.41
210118_s_at 210118_s_at M15329 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M15329.1 /DEF=Human interleukin 1-alpha (IL1A) mRNA, complete cds. /FEA=mRNA /GEN=IL1A /PROD=interleukin 1-alpha /DB_XREF=gi:186277 /UG=Hs.1722 interleukin 1, alpha /FL=gb:M15329.1 M15329 interleukin 1, alpha IL1A 3552 NM_000575 0001660 // fever generation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from sequence or structural similarity /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0034605 // cellular response to heat // inferred from direct assay /// 0035234 // ectopic germ cell programmed cell death // inferred from electronic annotation /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from direct assay /// 0050715 // positive regulation of cytokine secretion // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from mutant phenotype /// 0005829 // cytosol // inferred from direct assay 0005125 // cytokine activity // inferred from mutant phenotype /// 0005149 // interleukin-1 receptor binding // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -279.80 175.45 -18.13 0.00 0.00 -4.41
212971_at 212971_at AI769685 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI769685 /FEA=EST /DB_XREF=gi:5236194 /DB_XREF=est:wj25f08.x1 /CLONE=IMAGE:2403879 /UG=Hs.159604 cysteinyl-tRNA synthetase AI769685 cysteinyl-tRNA synthetase CARS 833 NM_001014437 /// NM_001014438 /// NM_001194997 /// NM_001751 /// NM_139273 /// NR_036542 /// XM_006718340 /// XM_006718341 /// XM_006725129 /// XM_006725130 /// XR_428857 /// XR_430701 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement 0000049 // tRNA binding // inferred from direct assay /// 0000049 // tRNA binding // inferred from mutant phenotype /// 0000049 // tRNA binding // non-traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from direct assay /// 0004817 // cysteine-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation -911.60 827.88 -18.05 0.00 0.00 -4.41
202081_at 202081_at NM_004907 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004907.1 /DEF=Homo sapiens immediate early protein (ETR101), mRNA. /FEA=mRNA /GEN=ETR101 /PROD=immediate early protein /DB_XREF=gi:4758313 /UG=Hs.737 immediate early protein /FL=gb:BC003625.1 gb:M62831.1 gb:NM_004907.1 NM_004907 immediate early response 2 IER2 9592 NM_004907 0005737 // cytoplasm // inferred from electronic annotation 598.05 854.18 17.91 0.00 0.00 -4.41
203574_at 203574_at NM_005384 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005384.1 /DEF=Homo sapiens nuclear factor, interleukin 3 regulated (NFIL3), mRNA. /FEA=mRNA /GEN=NFIL3 /PROD=nuclear factor, interleukin 3 regulated /DB_XREF=gi:4885516 /UG=Hs.79334 nuclear factor, interleukin 3 regulated /FL=gb:U26173.1 gb:NM_005384.1 NM_005384 nuclear factor, interleukin 3 regulated NFIL3 4783 NM_001289999 /// NM_001290000 /// NM_005384 /// XM_005251999 /// XM_005252000 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006955 // immune response // traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from direct assay /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -162.45 131.60 -17.85 0.00 0.00 -4.41
200020_at 200020_at NM_007375 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007375.1 /DEF=Homo sapiens TAR DNA binding protein (TARDBP), mRNA. /FEA=mRNA /GEN=TARDBP /PROD=TAR DNA binding protein /DB_XREF=gi:6678270 /UG=Hs.193989 TAR DNA binding protein /FL=gb:AL050265.1 gb:NM_007375.1 gb:U23731.1 NM_007375 TAR DNA binding protein TARDBP 23435 NM_007375 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from direct assay /// 0043922 // negative regulation by host of viral transcription // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 446.05 350.10 17.63 0.00 0.00 -4.41
215485_s_at 215485_s_at AA284705 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA284705 /FEA=EST /DB_XREF=gi:1927264 /DB_XREF=est:zt20g08.r1 /CLONE=IMAGE:713726 /UG=Hs.168383 intercellular adhesion molecule 1 (CD54), human rhinovirus receptor AA284705 intercellular adhesion molecule 1 ICAM1 3383 NM_000201 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001910 // regulation of leukocyte mediated cytotoxicity // traceable author statement /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0002291 // T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell // inferred from mutant phenotype /// 0002457 // T cell antigen processing and presentation // inferred from electronic annotation /// 0002693 // positive regulation of cellular extravasation // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from direct assay /// 0007157 // heterophilic cell-cell adhesion // traceable author statement /// 0007159 // leukocyte cell-cell adhesion // inferred from mutant phenotype /// 0007569 // cell aging // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0010477 // response to sulfur dioxide // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0022614 // membrane to membrane docking // inferred from expression pattern /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0034698 // response to gonadotropin // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0044406 // adhesion of symbiont to host // inferred from direct assay /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from electronic annotation /// 0046813 // receptor-mediated virion attachment to host cell // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050776 // regulation of immune response // traceable author statement /// 0050900 // leukocyte migration // inferred from expression pattern /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051926 // negative regulation of calcium ion transport // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0061028 // establishment of endothelial barrier // inferred from genetic interaction /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0071312 // cellular response to alkaloid // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071347 // cellular response to interleukin-1 // inferred from electronic annotation /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay 0001772 // immunological synapse // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005178 // integrin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation -405.10 240.93 -17.53 0.00 0.00 -4.41
221497_x_at 221497_x_at BC005369 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005369.1 /DEF=Homo sapiens, chromosome 1 open reading frame 12, clone MGC:12484, mRNA, complete cds. /FEA=mRNA /PROD=chromosome 1 open reading frame 12 /DB_XREF=gi:13529208 /UG=Hs.6523 chromosome 1 open reading frame 12 /FL=gb:AF229245.1 gb:AF277176.1 gb:NM_022051.1 gb:BC005369.1 BC005369 egl-9 family hypoxia-inducible factor 1 EGLN1 54583 NM_022051 /// XM_005273166 /// XM_005273167 /// XM_006711782 0001666 // response to hypoxia // inferred from direct assay /// 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from direct assay /// 0019511 // peptidyl-proline hydroxylation // inferred from electronic annotation /// 0030821 // negative regulation of cAMP catabolic process // inferred from sequence or structural similarity /// 0032364 // oxygen homeostasis // inferred from direct assay /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0045765 // regulation of angiogenesis // inferred from sequence or structural similarity /// 0051344 // negative regulation of cyclic-nucleotide phosphodiesterase activity // inferred from sequence or structural similarity /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060711 // labyrinthine layer development // inferred from electronic annotation /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement /// 0071731 // response to nitric oxide // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from sequence or structural similarity /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0031543 // peptidyl-proline dioxygenase activity // traceable author statement /// 0031545 // peptidyl-proline 4-dioxygenase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -288.80 242.57 -17.29 0.00 0.00 -4.41
211671_s_at 211671_s_at U01351 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U01351.1 /DEF=Human glucocorticoid receptor alpha-2 mRNA, complete cds. /FEA=mRNA /PROD=glucocorticoid receptor alpha-2 /DB_XREF=gi:458656 /FL=gb:U01351.1 U01351 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) NR3C1 2908 NM_000176 /// NM_001018074 /// NM_001018075 /// NM_001018076 /// NM_001018077 /// NM_001020825 /// NM_001024094 /// NM_001204258 /// NM_001204259 /// NM_001204260 /// NM_001204261 /// NM_001204262 /// NM_001204263 /// NM_001204264 /// NM_001204265 /// XM_005268419 /// XM_005268420 /// XM_005268421 /// XM_005268422 /// XM_005268423 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0031946 // regulation of glucocorticoid biosynthetic process // inferred from electronic annotation /// 0042921 // glucocorticoid receptor signaling pathway // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0043402 // glucocorticoid mediated signaling pathway // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004883 // glucocorticoid receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -187.20 151.00 -17.14 0.00 0.00 -4.41
217927_at 217927_at NM_014041 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014041.1 /DEF=Homo sapiens HSPC033 protein (HSPC033), mRNA. /FEA=mRNA /GEN=HSPC033 /PROD=HSPC033 protein /DB_XREF=gi:7661745 /UG=Hs.11125 HSPC033 protein /FL=gb:BC000884.1 gb:AF092138.1 gb:NM_014041.1 NM_014041 signal peptidase complex subunit 1 homolog (S. cerevisiae) SPCS1 28972 NM_014041 0006412 // translation // traceable author statement /// 0006465 // signal peptide processing // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005787 // signal peptidase complex // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from electronic annotation 324.98 582.64 17.13 0.00 0.00 -4.41
221985_at 221985_at AW006750 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW006750 /FEA=EST /DB_XREF=gi:5855528 /DB_XREF=est:wr28h09.x1 /CLONE=IMAGE:2489057 /UG=Hs.246875 hypothetical protein FLJ20059 AW006750 kelch-like family member 24 KLHL24 54800 NM_017644 /// XM_005247552 /// XM_005247553 /// XM_005247554 /// XM_005247555 /// XM_005247556 /// XM_006713674 /// XR_241499 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -173.48 130.76 -17.12 0.00 0.00 -4.41
219492_at 219492_at NM_012110 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012110.1 /DEF=Homo sapiens cystein-rich hydrophobic domain 2 (CHIC2), mRNA. /FEA=mRNA /GEN=CHIC2 /PROD=cystein-rich hydrophobic domain 2 /DB_XREF=gi:6912275 /UG=Hs.119488 cystein-rich hydrophobic domain 2 /FL=gb:AF159423.1 gb:NM_012110.1 NM_012110 cysteine-rich hydrophobic domain 2 CHIC2 26511 NM_012110 /// XM_005265738 /// XM_006714037 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -335.13 459.89 -17.06 0.00 0.00 -4.41
200920_s_at 200920_s_at AL535380 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL535380 /FEA=EST /DB_XREF=gi:12798873 /DB_XREF=est:AL535380 /CLONE=CS0DF009YN13 (5 prime) /UG=Hs.77054 B-cell translocation gene 1, anti-proliferative /FL=gb:NM_001731.1 AL535380 B-cell translocation gene 1, anti-proliferative BTG1 694 NM_001731 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0016477 // cell migration // non-traceable author statement /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0045603 // positive regulation of endothelial cell differentiation // inferred from mutant phenotype /// 0045663 // positive regulation of myoblast differentiation // inferred from direct assay /// 0045663 // positive regulation of myoblast differentiation // non-traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 2000271 // positive regulation of fibroblast apoptotic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from mutant phenotype 0003712 // transcription cofactor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0019900 // kinase binding // non-traceable author statement -346.05 333.65 -17.06 0.00 0.00 -4.41
202672_s_at 202672_s_at NM_001674 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001674.1 /DEF=Homo sapiens activating transcription factor 3 (ATF3), mRNA. /FEA=mRNA /GEN=ATF3 /PROD=activating transcription factor 3 long isoform /DB_XREF=gi:4502262 /UG=Hs.460 activating transcription factor 3 /FL=gb:L19871.1 gb:NM_001674.1 NM_001674 activating transcription factor 3 ATF3 467 NM_001030287 /// NM_001040619 /// NM_001206484 /// NM_001206485 /// NM_001206486 /// NM_001206488 /// NM_001674 /// NM_004024 /// XM_005273146 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from direct assay /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred by curator /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -424.30 274.43 -16.99 0.00 0.00 -4.41
204470_at 204470_at NM_001511 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001511.1 /DEF=Homo sapiens GRO1 oncogene (melanoma growth stimulating activity, alpha) (GRO1), mRNA. /FEA=mRNA /GEN=GRO1 /PROD=GRO1 oncogene (melanoma growth stimulatingactivity, alpha) /DB_XREF=gi:4504152 /UG=Hs.789 GRO1 oncogene (melanoma growth stimulating activity, alpha) /FL=gb:NM_001511.1 NM_001511 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) CXCL1 2919 NM_001511 /// NR_046035 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060326 // cell chemotaxis // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008047 // enzyme activator activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation -2968.80 1606.85 -16.79 0.00 0.00 -4.41
201278_at 201278_at N21202 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N21202 /FEA=EST /DB_XREF=gi:1126372 /DB_XREF=est:yx41e12.s1 /CLONE=IMAGE:264334 /UG=Hs.81988 disabled (Drosophila) homolog 2 (mitogen-responsive phosphoprotein) /FL=gb:U39050.1 gb:U53446.1 gb:BC003064.1 gb:NM_001343.1 N21202 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) /// uncharacterized LOC101926921 DAB2 /// LOC101926921 1601 /// 101926921 NM_001244871 /// NM_001343 /// XR_241759 /// XR_249766 /// XR_251775 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006907 // pinocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007588 // excretion // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0032091 // negative regulation of protein binding // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein import into nucleus // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 2000096 // positive regulation of Wnt signaling pathway, planar cell polarity pathway // inferred from mutant phenotype /// 2000370 // positive regulation of clathrin-mediated endocytosis // inferred from mutant phenotype /// 2000643 // positive regulation of early endosome to late endosome transport // inferred from mutant phenotype /// 2001046 // positive regulation of integrin-mediated signaling pathway // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070022 // transforming growth factor beta receptor homodimeric complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0035612 // AP-2 adaptor complex binding // inferred from electronic annotation /// 0035615 // clathrin adaptor activity // inferred from mutant phenotype /// 0038024 // cargo receptor activity // inferred from mutant phenotype /// 0046332 // SMAD binding // inferred from direct assay 323.55 382.57 16.77 0.00 0.00 -4.41
212501_at 212501_at AL564683 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL564683 /FEA=EST /DB_XREF=gi:12915335 /DB_XREF=est:AL564683 /CLONE=CS0DM007YK12 (3 prime) /UG=Hs.99029 CCAATenhancer binding protein (CEBP), beta /FL=gb:NM_005194.1 AL564683 CCAAT/enhancer binding protein (C/EBP), beta CEBPB 1051 NM_001285878 /// NM_001285879 /// NM_005194 0001892 // embryonic placenta development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006953 // acute-phase response // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0006955 // immune response // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045408 // regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0060644 // mammary gland epithelial cell differentiation // inferred from electronic annotation /// 0060850 // regulation of transcription involved in cell fate commitment // inferred from sequence or structural similarity /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -339.03 264.59 -16.27 0.00 0.00 -4.41
202023_at 202023_at NM_004428 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004428.1 /DEF=Homo sapiens ephrin-A1 (EFNA1), mRNA. /FEA=mRNA /GEN=EFNA1 /PROD=ephrin A1 precursor /DB_XREF=gi:4758245 /UG=Hs.1624 ephrin-A1 /FL=gb:M57730.1 gb:NM_004428.1 NM_004428 ephrin-A1 EFNA1 1942 NM_004428 /// NM_182685 /// XM_005244940 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0003180 // aortic valve morphogenesis // inferred from sequence or structural similarity /// 0003183 // mitral valve morphogenesis // inferred from sequence or structural similarity /// 0003199 // endocardial cushion to mesenchymal transition involved in heart valve formation // inferred from sequence or structural similarity /// 0007267 // cell-cell signaling // traceable author statement /// 0007411 // axon guidance // not recorded /// 0010719 // negative regulation of epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0014028 // notochord formation // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0043535 // regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0061002 // negative regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0046658 // anchored component of plasma membrane // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0046875 // ephrin receptor binding // inferred from physical interaction -318.00 258.32 -16.25 0.00 0.00 -4.41
209098_s_at 209098_s_at U61276 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U61276.1 /DEF=Human transmembrane protein Jagged 1 (HJ1) mRNA, complete cds. /FEA=mRNA /GEN=HJ1 /PROD=transmembrane protein Jagged 1 /DB_XREF=gi:1438936 /UG=Hs.91143 jagged 1 (Alagille syndrome) /FL=gb:U61276.1 gb:U73936.1 gb:AF003837.1 gb:AF028593.1 gb:NM_000214.1 U61276 jagged 1 JAG1 182 NM_000214 0001525 // angiogenesis // non-traceable author statement /// 0001709 // cell fate determination // non-traceable author statement /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002456 // T cell mediated immunity // inferred from mutant phenotype /// 0003184 // pulmonary valve morphogenesis // inferred from mutant phenotype /// 0003215 // cardiac right ventricle morphogenesis // inferred from sequence or structural similarity /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // non-traceable author statement /// 0007399 // nervous system development // non-traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0030097 // hemopoiesis // non-traceable author statement /// 0030216 // keratinocyte differentiation // non-traceable author statement /// 0030334 // regulation of cell migration // non-traceable author statement /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0035909 // aorta morphogenesis // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0045445 // myoblast differentiation // non-traceable author statement /// 0045446 // endothelial cell differentiation // non-traceable author statement /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045639 // positive regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from electronic annotation /// 0060411 // cardiac septum morphogenesis // inferred from sequence or structural similarity /// 0061156 // pulmonary artery morphogenesis // inferred from mutant phenotype /// 0061309 // cardiac neural crest cell development involved in outflow tract morphogenesis // inferred from sequence or structural similarity /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0061314 // Notch signaling involved in heart development // inferred from mutant phenotype /// 0061444 // endocardial cushion cell development // inferred from sequence or structural similarity /// 0072017 // distal tubule development // inferred from electronic annotation /// 0072070 // loop of Henle development // inferred from electronic annotation /// 0097150 // neuronal stem cell maintenance // inferred from expression pattern /// 2000737 // negative regulation of stem cell differentiation // inferred from mutant phenotype 0005576 // extracellular region // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation 0005112 // Notch binding // non-traceable author statement /// 0005198 // structural molecule activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // non-traceable author statement -270.92 201.56 -15.88 0.00 0.00 -4.41
201502_s_at 201502_s_at AI078167 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI078167 /FEA=EST /DB_XREF=gi:3412575 /DB_XREF=est:oz30d08.x1 /CLONE=IMAGE:1676847 /UG=Hs.81328 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha /FL=gb:NM_020529.1 gb:BC002601.1 gb:BC004983.1 gb:M69043.1 AI078167 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha NFKBIA 4792 NM_020529 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from mutant phenotype /// 0010745 // negative regulation of macrophage derived foam cell differentiation // inferred from mutant phenotype /// 0010875 // positive regulation of cholesterol efflux // inferred from mutant phenotype /// 0010888 // negative regulation of lipid storage // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032270 // positive regulation of cellular protein metabolic process // inferred from mutant phenotype /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042345 // regulation of NF-kappaB import into nucleus // non-traceable author statement /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // non-traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045638 // negative regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0070417 // cellular response to cold // non-traceable author statement /// 0070427 // nucleotide-binding oligomerization domain containing 1 signaling pathway // inferred from electronic annotation /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0033256 // I-kappaB/NF-kappaB complex // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // traceable author statement /// 0008139 // nuclear localization sequence binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from direct assay /// 0051059 // NF-kappaB binding // inferred from physical interaction -1216.00 790.77 -15.85 0.00 0.00 -4.41
208835_s_at 208835_s_at AW089673 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW089673 /FEA=EST /DB_XREF=gi:6047017 /DB_XREF=est:xd21h11.x1 /CLONE=IMAGE:2594469 /UG=Hs.3688 cisplatin resistance-associated overexpressed protein /FL=gb:AB034205.1 AW089673 LUC7-like 3 (S. cerevisiae) LUC7L3 51747 NM_006107 /// NM_016424 /// XM_005257448 /// XM_005257449 /// XM_005257450 /// XM_005257451 /// XM_005257452 /// XM_005257454 /// XM_005257455 /// XM_006721943 /// XR_243663 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005685 // U1 snRNP // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 140.45 137.43 15.79 0.00 0.00 -4.41
201280_s_at 201280_s_at NM_001343 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001343.1 /DEF=Homo sapiens disabled (Drosophila) homolog 2 (mitogen-responsive phosphoprotein) (DAB2), mRNA. /FEA=mRNA /GEN=DAB2 /PROD=disabled (Drosophila) homolog 2 /DB_XREF=gi:4503250 /UG=Hs.81988 disabled (Drosophila) homolog 2 (mitogen-responsive phosphoprotein) /FL=gb:U39050.1 gb:U53446.1 gb:BC003064.1 gb:NM_001343.1 NM_001343 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) /// uncharacterized LOC101926921 DAB2 /// LOC101926921 1601 /// 101926921 NM_001244871 /// NM_001343 /// XR_241759 /// XR_249766 /// XR_251775 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006907 // pinocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007588 // excretion // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0032091 // negative regulation of protein binding // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein import into nucleus // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 2000096 // positive regulation of Wnt signaling pathway, planar cell polarity pathway // inferred from mutant phenotype /// 2000370 // positive regulation of clathrin-mediated endocytosis // inferred from mutant phenotype /// 2000643 // positive regulation of early endosome to late endosome transport // inferred from mutant phenotype /// 2001046 // positive regulation of integrin-mediated signaling pathway // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070022 // transforming growth factor beta receptor homodimeric complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0035612 // AP-2 adaptor complex binding // inferred from electronic annotation /// 0035615 // clathrin adaptor activity // inferred from mutant phenotype /// 0038024 // cargo receptor activity // inferred from mutant phenotype /// 0046332 // SMAD binding // inferred from direct assay 399.48 431.16 15.74 0.00 0.00 -4.41
212361_s_at 212361_s_at AW190070 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW190070 /FEA=EST /DB_XREF=gi:6464550 /DB_XREF=est:xl11f11.x1 /CLONE=IMAGE:2675949 /UG=Hs.1526 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 AW190070 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 ATP2A2 488 NM_001135765 /// NM_001681 /// NM_170665 /// XM_005253888 /// XR_243009 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0006984 // ER-nucleus signaling pathway // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008544 // epidermis development // traceable author statement /// 0010460 // positive regulation of heart rate // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0055119 // relaxation of cardiac muscle // traceable author statement /// 0070296 // sarcoplasmic reticulum calcium ion transport // traceable author statement /// 0070588 // calcium ion transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // traceable author statement /// 0086036 // regulation of cardiac muscle cell membrane potential // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0031095 // platelet dense tubular network membrane // traceable author statement /// 0033017 // sarcoplasmic reticulum membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019829 // cation-transporting ATPase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0044548 // S100 protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0086039 // calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential // traceable author statement 237.93 240.94 15.45 0.00 0.00 -4.41
201783_s_at 201783_s_at NM_021975 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021975.1 /DEF=Homo sapiens v-rel avian reticuloendotheliosis viral oncogene homolog A (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (p65)) (RELA), mRNA. /FEA=mRNA /GEN=RELA /PROD=v-rel avian reticuloendotheliosis viral oncogenehomolog A (nuclear factor of kappa light polypeptide geneenhancer in B-cells 3 (p65)) /DB_XREF=gi:11496238 /UG=Hs.75569 v-rel avian reticuloendotheliosis viral oncogene homolog A (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (p65)) /FL=gb:NM_021975.1 gb:L19067.1 NM_021975 v-rel avian reticuloendotheliosis viral oncogene homolog A RELA 5970 NM_001145138 /// NM_001243984 /// NM_001243985 /// NM_021975 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001889 // liver development // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006117 // acetaldehyde metabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006952 // defense response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from direct assay /// 0006968 // cellular defense response // non-traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0010035 // response to inorganic substance // inferred from electronic annotation /// 0010224 // response to UV-B // inferred from direct assay /// 0014040 // positive regulation of Schwann cell differentiation // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0031293 // membrane protein intracellular domain proteolysis // traceable author statement /// 0032332 // positive regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0033590 // response to cobalamin // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051607 // defense response to virus // non-traceable author statement /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from genetic interaction /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071316 // cellular response to nicotine // inferred from mutant phenotype /// 0071347 // cellular response to interleukin-1 // inferred from direct assay /// 0071354 // cellular response to interleukin-6 // inferred from mutant phenotype /// 0071356 // cellular response to tumor necrosis factor // inferred from direct assay /// 0071375 // cellular response to peptide hormone stimulus // inferred from mutant phenotype /// 2000630 // positive regulation of miRNA metabolic process // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0001205 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0033613 // activating transcription factor binding // inferred from physical interaction /// 0042301 // phosphate ion binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from physical interaction /// 0070491 // repressing transcription factor binding // inferred from physical interaction /// 0071532 // ankyrin repeat binding // inferred from electronic annotation -235.30 468.60 -15.41 0.00 0.00 -4.41
213194_at 213194_at BF059159 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF059159 /FEA=EST /DB_XREF=gi:10813055 /DB_XREF=est:7k66g04.x1 /CLONE=IMAGE:3480391 /UG=Hs.301198 roundabout (axon guidance receptor, Drosophila) homolog 1 /FL=gb:AF040990.1 gb:NM_002941.1 BF059159 roundabout, axon guidance receptor, homolog 1 (Drosophila) ROBO1 6091 NM_001145845 /// NM_002941 /// NM_133631 /// XM_006713276 /// XM_006713277 /// XM_006713278 0002042 // cell migration involved in sprouting angiogenesis // inferred from mutant phenotype /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0016199 // axon midline choice point recognition // inferred from sequence or structural similarity /// 0021836 // chemorepulsion involved in postnatal olfactory bulb interneuron migration // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from mutant phenotype /// 0035385 // Roundabout signaling pathway // inferred from mutant phenotype /// 0050772 // positive regulation of axonogenesis // inferred from direct assay /// 0050925 // negative regulation of negative chemotaxis // inferred from direct assay /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0070100 // negative regulation of chemokine-mediated signaling pathway // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030673 // axolemma // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008046 // axon guidance receptor activity // traceable author statement /// 0030275 // LRR domain binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -227.40 231.15 -15.40 0.00 0.00 -4.41
201084_s_at 201084_s_at NM_014739 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014739.1 /DEF=Homo sapiens KIAA0164 gene product (KIAA0164), mRNA. /FEA=mRNA /GEN=KIAA0164 /PROD=KIAA0164 gene product /DB_XREF=gi:7661957 /UG=Hs.80338 KIAA0164 gene product /FL=gb:D79986.1 gb:NM_014739.1 NM_014739 BCL2-associated transcription factor 1 BCLAF1 9774 NM_001077440 /// NM_001077441 /// NM_014739 /// XM_005267236 /// XM_005267237 /// XM_005267238 /// XM_005267239 /// XR_245558 /// XR_245559 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043620 // regulation of DNA-templated transcription in response to stress // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // traceable author statement /// 2000144 // positive regulation of DNA-templated transcription, initiation // inferred from mutant phenotype /// 2001022 // positive regulation of response to DNA damage stimulus // inferred from mutant phenotype /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 335.30 497.77 15.30 0.00 0.00 -4.41
204053_x_at 204053_x_at U96180 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U96180.1 /DEF=Human protein tyrosine phosphatase (TEP1) mRNA, complete cds. /FEA=mRNA /GEN=TEP1 /PROD=protein tyrosine phosphatase /DB_XREF=gi:2039369 /UG=Hs.10712 phosphatase and tensin homolog (mutated in multiple advanced cancers 1) /FL=gb:U92436.1 gb:U93051.1 gb:U96180.1 gb:NM_000314.1 U96180 phosphatase and tensin homolog PTEN 5728 NM_000314 /// XM_006717926 /// XM_006717927 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0002902 // regulation of B cell apoptotic process // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006915 // apoptotic process // inferred from sequence or structural similarity /// 0007092 // activation of mitotic anaphase-promoting complex activity // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007270 // neuron-neuron synaptic transmission // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from sequence or structural similarity /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0007613 // memory // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010975 // regulation of neuron projection development // inferred from sequence or structural similarity /// 0014067 // negative regulation of phosphatidylinositol 3-kinase signaling // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0021542 // dentate gyrus development // inferred from sequence or structural similarity /// 0021955 // central nervous system neuron axonogenesis // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031642 // negative regulation of myelination // inferred from electronic annotation /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0031658 // negative regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0032286 // central nervous system myelin maintenance // inferred from sequence or structural similarity /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032535 // regulation of cellular component size // inferred from sequence or structural similarity /// 0033032 // regulation of myeloid cell apoptotic process // inferred from electronic annotation /// 0033198 // response to ATP // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from sequence or structural similarity /// 0035176 // social behavior // inferred from sequence or structural similarity /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0042711 // maternal behavior // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from sequence or structural similarity /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045475 // locomotor rhythm // inferred from sequence or structural similarity /// 0045792 // negative regulation of cell size // inferred from sequence or structural similarity /// 0046621 // negative regulation of organ growth // inferred from sequence or structural similarity /// 0046685 // response to arsenic-containing substance // inferred from electronic annotation /// 0046855 // inositol phosphate dephosphorylation // inferred from direct assay /// 0046856 // phosphatidylinositol dephosphorylation // inferred from direct assay /// 0046856 // phosphatidylinositol dephosphorylation // inferred from mutant phenotype /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0048853 // forebrain morphogenesis // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from sequence or structural similarity /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050765 // negative regulation of phagocytosis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from mutant phenotype /// 0051898 // negative regulation of protein kinase B signaling // inferred from mutant phenotype /// 0060024 // rhythmic synaptic transmission // inferred from sequence or structural similarity /// 0060070 // canonical Wnt signaling pathway // inferred from direct assay /// 0060074 // synapse maturation // inferred from sequence or structural similarity /// 0060134 // prepulse inhibition // inferred from sequence or structural similarity /// 0060179 // male mating behavior // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060997 // dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0061002 // negative regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0090071 // negative regulation of ribosome biogenesis // inferred from electronic annotation /// 0090344 // negative regulation of cell aging // inferred from electronic annotation /// 0090394 // negative regulation of excitatory postsynaptic membrane potential // inferred from sequence or structural similarity /// 0097105 // presynaptic membrane assembly // inferred from sequence or structural similarity /// 0097107 // postsynaptic density assembly // inferred from sequence or structural similarity /// 2000060 // positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from direct assay /// 2000463 // positive regulation of excitatory postsynaptic membrane potential // inferred from sequence or structural similarity /// 2000808 // negative regulation of synaptic vesicle clustering // inferred from sequence or structural similarity /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0035749 // myelin sheath adaxonal region // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from direct assay /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from sequence or structural similarity /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004438 // phosphatidylinositol-3-phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0010997 // anaphase-promoting complex binding // inferred from physical interaction /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // inferred from direct assay /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0051717 // inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity // inferred from direct assay /// 0051717 // inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity // traceable author statement /// 0051800 // phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity // inferred from direct assay /// 0051800 // phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity // traceable author statement -146.88 185.06 -15.21 0.00 0.00 -4.41
213233_s_at 213233_s_at AA460694 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA460694 /FEA=EST /DB_XREF=gi:2185814 /DB_XREF=est:zx69c04.s1 /CLONE=IMAGE:796710 /UG=Hs.106283 hypothetical protein FLJ10262 AA460694 kelch-like family member 9 KLHL9 55958 NM_001040713 /// NM_018847 0000910 // cytokinesis // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0030496 // midbody // inferred from direct assay /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 138.82 197.51 15.08 0.00 0.00 -4.41
204203_at 204203_at NM_001806 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001806.1 /DEF=Homo sapiens CCAATenhancer binding protein (CEBP), gamma (CEBPG), mRNA. /FEA=mRNA /GEN=CEBPG /PROD=CCAATenhancer binding protein gamma /DB_XREF=gi:4502768 /UG=Hs.2227 CCAATenhancer binding protein (CEBP), gamma /FL=gb:NM_001806.1 gb:U20240.1 NM_001806 CCAAT/enhancer binding protein (C/EBP), gamma CEBPG 1054 NM_001252296 /// NM_001806 0001889 // liver development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006955 // immune response // inferred from sequence or structural similarity /// 0016071 // mRNA metabolic process // inferred from electronic annotation /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0042267 // natural killer cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0043353 // enucleate erythrocyte differentiation // inferred from sequence or structural similarity /// 0043388 // positive regulation of DNA binding // traceable author statement /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0045078 // positive regulation of interferon-gamma biosynthetic process // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // inferred from expression pattern /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay -133.80 127.83 -15.06 0.00 0.00 -4.41
202644_s_at 202644_s_at NM_006290 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006290.1 /DEF=Homo sapiens tumor necrosis factor, alpha-induced protein 3 (TNFAIP3), mRNA. /FEA=mRNA /GEN=TNFAIP3 /PROD=tumor necrosis factor, alpha-induced protein 3 /DB_XREF=gi:5454131 /UG=Hs.211600 tumor necrosis factor, alpha-induced protein 3 /FL=gb:M59465.1 gb:NM_006290.1 NM_006290 tumor necrosis factor, alpha-induced protein 3 TNFAIP3 7128 NM_001270507 /// NM_001270508 /// NM_006290 /// XM_005267119 /// XM_006715555 0001922 // B-1 B cell homeostasis // inferred from sequence or structural similarity /// 0002237 // response to molecule of bacterial origin // inferred from direct assay /// 0002634 // regulation of germinal center formation // inferred from sequence or structural similarity /// 0002677 // negative regulation of chronic inflammatory response // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032691 // negative regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032703 // negative regulation of interleukin-2 production // inferred from mutant phenotype /// 0032715 // negative regulation of interleukin-6 production // inferred from sequence or structural similarity /// 0032720 // negative regulation of tumor necrosis factor production // inferred from sequence or structural similarity /// 0034136 // negative regulation of toll-like receptor 2 signaling pathway // non-traceable author statement /// 0034140 // negative regulation of toll-like receptor 3 signaling pathway // inferred from direct assay /// 0034144 // negative regulation of toll-like receptor 4 signaling pathway // non-traceable author statement /// 0034148 // negative regulation of toll-like receptor 5 signaling pathway // inferred from electronic annotation /// 0035871 // protein K11-linked deubiquitination // inferred from direct assay /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // non-traceable author statement /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // non-traceable author statement /// 0045824 // negative regulation of innate immune response // inferred from sequence or structural similarity /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050691 // regulation of defense response to virus by host // non-traceable author statement /// 0050728 // negative regulation of inflammatory response // inferred from sequence or structural similarity /// 0050869 // negative regulation of B cell activation // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // non-traceable author statement /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0061043 // regulation of vascular wound healing // non-traceable author statement /// 0070301 // cellular response to hydrogen peroxide // inferred from sequence or structural similarity /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070429 // negative regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway // inferred from electronic annotation /// 0070433 // negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0071108 // protein K48-linked deubiquitination // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0072573 // tolerance induction to lipopolysaccharide // inferred from mutant phenotype /// 0090291 // negative regulation of osteoclast proliferation // non-traceable author statement /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000347 // positive regulation of hepatocyte proliferation // inferred from electronic annotation /// 2000349 // negative regulation of CD40 signaling pathway // inferred from mutant phenotype /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from physical interaction /// 0043621 // protein self-association // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -575.07 338.96 -15.05 0.00 0.00 -4.41
203910_at 203910_at NM_004815 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004815.1 /DEF=Homo sapiens PTPL1-associated RhoGAP 1 (PARG1), mRNA. /FEA=mRNA /GEN=PARG1 /PROD=PTPL1-associated RhoGAP 1 /DB_XREF=gi:4758881 /UG=Hs.70983 PTPL1-associated RhoGAP 1 /FL=gb:U90920.1 gb:NM_004815.1 NM_004815 Rho GTPase activating protein 29 ARHGAP29 9411 NM_004815 /// XM_006711048 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 305.78 989.66 15.00 0.00 0.00 -4.41
212295_s_at 212295_s_at AA148507 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA148507 /FEA=EST /DB_XREF=gi:1721551 /DB_XREF=est:zl06c05.s1 /CLONE=IMAGE:491528 /UG=Hs.14846 Homo sapiens mRNA; cDNA DKFZp564D016 (from clone DKFZp564D016) AA148507 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 SLC7A1 6541 NM_003045 /// XM_005266507 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // non-traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0015809 // arginine transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation -593.13 886.34 -14.75 0.00 0.00 -4.41
212912_at 212912_at AI992251 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI992251 /FEA=EST /DB_XREF=gi:5839156 /DB_XREF=est:ws41d12.x1 /CLONE=IMAGE:2499767 /UG=Hs.184581 ESTs AI992251 ribosomal protein S6 kinase, 90kDa, polypeptide 2 RPS6KA2 6196 NM_001006932 /// NM_021135 /// XM_005267092 /// XM_006715549 0001556 // oocyte maturation // inferred from electronic annotation /// 0002035 // brain renin-angiotensin system // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045835 // negative regulation of meiosis // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0060047 // heart contraction // inferred from electronic annotation /// 0070613 // regulation of protein processing // inferred from electronic annotation /// 0071322 // cellular response to carbohydrate stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004711 // ribosomal protein S6 kinase activity // inferred from electronic annotation /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -194.95 377.15 -14.73 0.00 0.00 -4.41
200898_s_at 200898_s_at AK002091 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK002091.1 /DEF=Homo sapiens cDNA FLJ11229 fis, clone PLACE1008356, highly similar to Homo sapiens mRNA for KIAA0679 protein. /FEA=mRNA /DB_XREF=gi:7023763 /UG=Hs.5734 meningioma expressed antigen 5 (hyaluronidase) /FL=gb:AF036144.2 gb:NM_012215.1 AK002091 meningioma expressed antigen 5 (hyaluronidase) MGEA5 10724 NM_001142434 /// NM_012215 /// XR_246060 0006044 // N-acetylglucosamine metabolic process // inferred from electronic annotation /// 0006516 // glycoprotein catabolic process // traceable author statement /// 0006612 // protein targeting to membrane // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0010616 // negative regulation of cardiac muscle adaptation // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation /// 0031343 // positive regulation of cell killing // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0043243 // positive regulation of protein complex disassembly // inferred from electronic annotation /// 0045862 // positive regulation of proteolysis // inferred from electronic annotation /// 0046060 // dATP metabolic process // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0051054 // positive regulation of DNA metabolic process // inferred from electronic annotation /// 0051901 // positive regulation of mitochondrial depolarization // inferred from electronic annotation /// 0051928 // positive regulation of calcium ion transport // inferred from electronic annotation /// 0060051 // negative regulation of protein glycosylation // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation /// 0070265 // necrotic cell death // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004415 // hyalurononglucosaminidase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation -270.60 247.15 -14.66 0.00 0.00 -4.41
209852_x_at 209852_x_at BC001423 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001423.1 /DEF=Homo sapiens, Similar to proteaseome (prosome, macropain) 28 subunit, 3, clone MGC:1394, mRNA, complete cds. /FEA=mRNA /PROD=Similar to proteaseome (prosome, macropain) 28subunit, 3 /DB_XREF=gi:12655138 /UG=Hs.152978 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) /FL=gb:BC001423.1 gb:BC002684.1 BC001423 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) PSME3 10197 NM_001267045 /// NM_005789 /// NM_176863 /// NR_049772 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010950 // positive regulation of endopeptidase activity // inferred from direct assay /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0061136 // regulation of proteasomal protein catabolic process // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008537 // proteasome activator complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0002039 // p53 binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0061133 // endopeptidase activator activity // inferred from direct assay /// 0097371 // MDM2/MDM4 family protein binding // inferred from direct assay 160.12 291.26 14.51 0.00 0.00 -4.41
219270_at 219270_at NM_024111 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024111.1 /DEF=Homo sapiens hypothetical protein MGC4504 (MGC4504), mRNA. /FEA=mRNA /GEN=MGC4504 /PROD=hypothetical protein MGC4504 /DB_XREF=gi:13129125 /UG=Hs.155569 hypothetical protein MGC4504 /FL=gb:BC001847.1 gb:NM_024111.1 NM_024111 ChaC, cation transport regulator homolog 1 (E. coli) CHAC1 79094 NM_001142776 /// NM_024111 0006915 // apoptotic process // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010955 // negative regulation of protein processing // inferred from mutant phenotype /// 0022008 // neurogenesis // inferred from sequence or structural similarity /// 0045746 // negative regulation of Notch signaling pathway // inferred from mutant phenotype /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay 0005112 // Notch binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction -154.25 93.20 -14.44 0.00 0.00 -4.41
212266_s_at 212266_s_at AW084582 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW084582 /FEA=EST /DB_XREF=gi:6039734 /DB_XREF=est:wz26h03.x1 /CLONE=IMAGE:2559221 /UG=Hs.166975 splicing factor, arginineserine-rich 5 AW084582 serine/arginine-rich splicing factor 5 SRSF5 6430 NM_001039465 /// NM_006925 /// XM_005267998 /// XM_005267999 /// XM_005268000 /// XM_005268001 /// XR_429326 /// XR_429327 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006376 // mRNA splice site selection // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0009611 // response to wounding // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // inferred from electronic annotation 275.52 250.34 14.42 0.00 0.00 -4.41
204404_at 204404_at NM_001046 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001046.1 /DEF=Homo sapiens solute carrier family 12 (sodiumpotassiumchloride transporters), member 2 (SLC12A2), mRNA. /FEA=mRNA /GEN=SLC12A2 /PROD=solute carrier family 12(sodiumpotassiumchloride transporters), member 2 /DB_XREF=gi:4506974 /UG=Hs.110736 solute carrier family 12 (sodiumpotassiumchloride transporters), member 2 /FL=gb:NM_001046.1 gb:U30246.1 NM_001046 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 SLC12A2 6558 NM_001046 /// NM_001256461 /// NR_046207 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0006972 // hyperosmotic response // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0015696 // ammonium transport // inferred from direct assay /// 0030321 // transepithelial chloride transport // inferred from direct assay /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0045795 // positive regulation of cell volume // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0070634 // transepithelial ammonium transport // inferred from direct assay /// 0072488 // ammonium transmembrane transport // inferred from direct assay /// 1902476 // chloride transmembrane transport // inferred from electronic annotation /// 1902476 // chloride transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008511 // sodium:potassium:chloride symporter activity // inferred from electronic annotation /// 0008519 // ammonium transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation -523.23 406.49 -14.24 0.00 0.00 -4.41
203313_s_at 203313_s_at NM_003244 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003244.1 /DEF=Homo sapiens TG-interacting factor (TALE family homeobox) (TGIF), mRNA. /FEA=mRNA /GEN=TGIF /PROD=TG-interacting factor (TALE family homeobox) /DB_XREF=gi:4507472 /UG=Hs.90077 TG-interacting factor (TALE family homeobox) /FL=gb:BC000814.1 gb:NM_003244.1 gb:AF179900.1 NM_003244 TGFB-induced factor homeobox 1 TGIF1 7050 NM_001278682 /// NM_001278684 /// NM_001278686 /// NM_003244 /// NM_170695 /// NM_173207 /// NM_173208 /// NM_173209 /// NM_173210 /// NM_173211 /// NM_174886 /// XM_005258135 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001843 // neural tube closure // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010470 // regulation of gastrulation // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0038092 // nodal signaling pathway // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from mutant phenotype /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from electronic annotation -206.25 262.98 -14.17 0.00 0.00 -4.41
217947_at 217947_at NM_017801 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017801.1 /DEF=Homo sapiens hypothetical protein FLJ20396 (FLJ20396), mRNA. /FEA=mRNA /GEN=FLJ20396 /PROD=hypothetical protein FLJ20396 /DB_XREF=gi:8923369 /UG=Hs.283685 hypothetical protein FLJ20396 /FL=gb:BC002797.1 gb:NM_017801.1 NM_017801 CKLF-like MARVEL transmembrane domain containing 6 CMTM6 54918 NM_017801 0006935 // chemotaxis // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation 149.05 502.12 13.97 0.00 0.00 -4.41
200797_s_at 200797_s_at AI275690 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI275690 /FEA=EST /DB_XREF=gi:3897964 /DB_XREF=est:qw03a03.x1 /CLONE=IMAGE:1989964 /UG=Hs.86386 myeloid cell leukemia sequence 1 (BCL2-related) /FL=gb:NM_021960.1 gb:AF118124.1 AI275690 myeloid cell leukemia 1 MCL1 4170 NM_001197320 /// NM_021960 /// NM_182763 0001709 // cell fate determination // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0019725 // cellular homeostasis // non-traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0071806 // protein transmembrane transport // traceable author statement /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype /// 0097194 // execution phase of apoptosis // inferred from direct assay /// 1900118 // negative regulation of execution phase of apoptosis // traceable author statement /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype /// 2001020 // regulation of response to DNA damage stimulus // inferred from mutant phenotype /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0097136 // Bcl-2 family protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015266 // protein channel activity // traceable author statement /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051434 // BH3 domain binding // inferred from physical interaction 517.40 492.02 13.93 0.00 0.00 -4.41
209265_s_at 209265_s_at BC001650 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001650.1 /DEF=Homo sapiens, Similar to putative methyltransferase, clone MGC:2708, mRNA, complete cds. /FEA=mRNA /PROD=Similar to putative methyltransferase /DB_XREF=gi:12804482 /UG=Hs.268149 putative methyltransferase /FL=gb:BC003031.1 gb:BC001650.1 gb:NM_019852.1 BC001650 methyltransferase like 3 METTL3 56339 NM_019852 /// XM_006720206 0001510 // RNA methylation // inferred from mutant phenotype /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0019827 // stem cell maintenance // inferred from sequence or structural similarity /// 0032259 // methylation // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0061157 // mRNA destabilization // inferred from sequence or structural similarity /// 0080009 // mRNA methylation // inferred from direct assay /// 0080009 // mRNA methylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016607 // nuclear speck // inferred from direct assay /// 0036396 // MIS complex // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016422 // mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity // inferred from direct assay /// 0016422 // mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation 109.60 96.92 13.92 0.00 0.00 -4.41
203156_at 203156_at NM_016248 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016248.1 /DEF=Homo sapiens A-kinase anchoring protein 220 (LOC51707), mRNA. /FEA=mRNA /GEN=LOC51707 /PROD=A-kinase anchoring protein 220 /DB_XREF=gi:7706456 /UG=Hs.232076 A kinase (PRKA) anchor protein 11 /FL=gb:AF176555.1 gb:NM_016248.1 NM_016248 A kinase (PRKA) anchor protein 11 AKAP11 11215 NM_016248 /// NM_144490 /// XM_005266247 /// XM_005266248 /// XM_005266249 /// XM_005266250 0035556 // intracellular signal transduction // traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0008157 // protein phosphatase 1 binding // traceable author statement /// 0051018 // protein kinase A binding // traceable author statement 193.70 186.65 13.87 0.00 0.00 -4.41
213671_s_at 213671_s_at AA621558 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA621558 /FEA=EST /DB_XREF=gi:2525497 /DB_XREF=est:af53a09.s1 /CLONE=IMAGE:1035352 /UG=Hs.279946 methionine-tRNA synthetase AA621558 methionyl-tRNA synthetase /// microRNA 6758 MARS /// MIR6758 4141 /// 102465454 NM_004990 /// NR_106816 /// XM_006719398 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006431 // methionyl-tRNA aminoacylation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004825 // methionine-tRNA ligase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -195.55 261.77 -13.80 0.00 0.00 -4.41
219210_s_at 219210_s_at NM_016530 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016530.1 /DEF=Homo sapiens RAB-8b protein (LOC51762), mRNA. /FEA=mRNA /GEN=LOC51762 /PROD=RAB-8b protein /DB_XREF=gi:7706562 /UG=Hs.321245 RAB-8b protein /FL=gb:AB038995.1 gb:NM_016530.1 NM_016530 RAB8B, member RAS oncogene family RAB8B 51762 NM_016530 /// XM_006720569 0006184 // GTP catabolic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // non-traceable author statement /// 0019882 // antigen processing and presentation // inferred from mutant phenotype /// 0031346 // positive regulation of cell projection organization // inferred from electronic annotation /// 0034332 // adherens junction organization // inferred from sequence or structural similarity /// 0045046 // protein import into peroxisome membrane // inferred from direct assay /// 0051461 // positive regulation of corticotropin secretion // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0051286 // cell tip // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable author statement /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0030911 // TPR domain binding // inferred from electronic annotation -158.12 187.64 -13.59 0.00 0.00 -4.41
208706_s_at 208706_s_at AK026933 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026933.1 /DEF=Homo sapiens cDNA: FLJ23280 fis, clone HEP07194. /FEA=mRNA /DB_XREF=gi:10439907 /UG=Hs.286236 eukaryotic translation initiation factor 5 /FL=gb:AL080102.1 AK026933 eukaryotic translation initiation factor 5 EIF5 1983 NM_001969 /// NM_183004 0006184 // GTP catabolic process // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // non-traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 212.78 340.86 13.55 0.00 0.00 -4.41
201266_at 201266_at NM_003330 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003330.1 /DEF=Homo sapiens thioredoxin reductase 1 (TXNRD1), mRNA. /FEA=mRNA /GEN=TXNRD1 /PROD=thioredoxin reductase 1 /DB_XREF=gi:4507746 /UG=Hs.13046 thioredoxin reductase 1 /FL=gb:D88687.1 gb:AF077367.1 gb:NM_003330.1 gb:AF208018.1 NM_003330 thioredoxin reductase 1 TXNRD1 7296 NM_001093771 /// NM_001261445 /// NM_001261446 /// NM_003330 /// NM_182729 /// NM_182742 /// NM_182743 0001707 // mesoderm formation // inferred from electronic annotation /// 0001890 // placenta development // inferred from electronic annotation /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006790 // sulfur compound metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007369 // gastrulation // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010269 // response to selenium ion // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016259 // selenocysteine metabolic process // inferred from electronic annotation /// 0042191 // methylmercury metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042537 // benzene-containing compound metabolic process // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070276 // halogen metabolic process // inferred from electronic annotation /// 0070995 // NADPH oxidation // inferred from electronic annotation /// 0071280 // cellular response to copper ion // inferred from electronic annotation /// 0071455 // cellular response to hyperoxia // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016174 // NAD(P)H oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016668 // oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor // inferred from electronic annotation /// 0033797 // selenate reductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0045340 // mercury ion binding // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation -1045.80 1982.05 -13.53 0.00 0.00 -4.41
217724_at 217724_at AF131807 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF131807.1 /DEF=Homo sapiens clone 25076 mRNA sequence. /FEA=mRNA /DB_XREF=gi:4406639 /UG=Hs.165998 PAI-1 mRNA-binding protein /FL=gb:AL080119.1 gb:NM_015640.1 AF131807 SERPINE1 mRNA binding protein 1 SERBP1 26135 NM_001018067 /// NM_001018068 /// NM_001018069 /// NM_015640 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 434.90 839.77 13.52 0.00 0.00 -4.41
201917_s_at 201917_s_at AI694452 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI694452 /FEA=EST /DB_XREF=gi:4971792 /DB_XREF=est:wd83h07.x1 /CLONE=IMAGE:2338237 /UG=Hs.42484 hypothetical protein FLJ10618 /FL=gb:NM_018155.1 AI694452 solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 SLC25A36 55186 NM_001104647 /// NM_018155 /// XM_005247575 /// XM_006713685 0006810 // transport // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -211.33 199.46 -13.51 0.00 0.00 -4.41
203127_s_at 203127_s_at BC005123 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005123.1 /DEF=Homo sapiens, serine palmitoyltransferase, long chain base subunit 2, clone MGC:10362, mRNA, complete cds. /FEA=mRNA /PROD=serine palmitoyltransferase, long chain basesubunit 2 /DB_XREF=gi:13477298 /UG=Hs.59403 serine palmitoyltransferase, long chain base subunit 2 /FL=gb:BC005123.1 gb:AB011098.1 gb:NM_004863.1 BC005123 serine palmitoyltransferase, long chain base subunit 2 SPTLC2 9517 NM_004863 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006686 // sphingomyelin biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046511 // sphinganine biosynthetic process // inferred from electronic annotation /// 0046512 // sphingosine biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0017059 // serine C-palmitoyltransferase complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation -156.40 258.88 -13.50 0.00 0.00 -4.41
215446_s_at 215446_s_at L16895 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:L16895 /DEF=Human lysyl oxidase (LOX) gene, exon 7 /FEA=mRNA /DB_XREF=gi:292923 /UG=Hs.102267 lysyl oxidase L16895 lysyl oxidase LOX 4015 NM_001178102 /// NM_002317 0001568 // blood vessel development // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0048251 // elastic fiber assembly // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0004720 // protein-lysine 6-oxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -264.80 287.75 -13.49 0.00 0.00 -4.41
201448_at 201448_at AL046419 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL046419 /FEA=EST /DB_XREF=gi:5434493 /DB_XREF=est:DKFZp434N247_s1 /CLONE=DKFZp434N247 /UG=Hs.239489 TIA1 cytotoxic granule-associated RNA-binding protein /FL=gb:NM_022037.1 gb:M77142.1 AL046419 TIA1 cytotoxic granule-associated RNA binding protein TIA1 7072 NM_022037 /// NM_022173 /// XM_005264524 /// XM_005264525 /// XM_005264526 /// XM_005264527 /// XM_005264528 /// XM_005264530 /// XM_005264531 /// XM_005264532 /// XM_005264533 /// XR_244953 /// XR_244954 /// XR_244955 0006915 // apoptotic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0042036 // negative regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0048024 // regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0097165 // nuclear stress granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // traceable author statement /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 126.40 103.75 13.48 0.00 0.00 -4.41
205542_at 205542_at NM_012449 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012449.1 /DEF=Homo sapiens six transmembrane epithelial antigen of the prostate (STEAP), mRNA. /FEA=mRNA /GEN=STEAP /PROD=six transmembrane epithelial antigen of theprostate /DB_XREF=gi:9558758 /UG=Hs.61635 six transmembrane epithelial antigen of the prostate /FL=gb:AF186249.1 gb:NM_012449.1 NM_012449 six transmembrane epithelial antigen of the prostate 1 STEAP1 26872 NM_012449 0006811 // ion transport // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005911 // cell-cell junction // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005215 // transporter activity // traceable author statement /// 0015267 // channel activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 236.60 216.78 13.45 0.00 0.00 -4.41
210371_s_at 210371_s_at BC003092 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003092.1 /DEF=Homo sapiens, Similar to retinoblastoma binding protein 4, clone MGC:1393, mRNA, complete cds. /FEA=mRNA /PROD=Similar to retinoblastoma binding protein 4 /DB_XREF=gi:13111850 /UG=Hs.16003 retinoblastoma-binding protein 4 /FL=gb:BC003092.1 gb:NM_005610.1 BC003092 retinoblastoma binding protein 4 RBBP4 5928 NM_001135255 /// NM_001135256 /// NM_005610 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006260 // DNA replication // inferred from electronic annotation /// 0006334 // nucleosome assembly // traceable author statement /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031497 // chromatin assembly // inferred from direct assay /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0051726 // regulation of cell cycle // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016580 // Sin3 complex // non-traceable author statement /// 0016581 // NuRD complex // inferred from direct assay /// 0016581 // NuRD complex // non-traceable author statement /// 0016589 // NURF complex // inferred from direct assay /// 0033186 // CAF-1 complex // inferred from direct assay /// 0035098 // ESC/E(Z) complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042393 // histone binding // non-traceable author statement /// 0042826 // histone deacetylase binding // inferred from physical interaction 188.65 235.65 13.43 0.00 0.00 -4.41
203063_at 203063_at NM_014634 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014634.1 /DEF=Homo sapiens KIAA0015 gene product (KIAA0015), mRNA. /FEA=mRNA /GEN=KIAA0015 /PROD=KIAA0015 gene product /DB_XREF=gi:7661861 /UG=Hs.278441 KIAA0015 gene product /FL=gb:D13640.1 gb:NM_014634.1 NM_014634 protein phosphatase, Mg2+/Mn2+ dependent, 1F PPM1F 9647 NM_014634 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016576 // histone dephosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0035690 // cellular response to drug // inferred from direct assay /// 0035970 // peptidyl-threonine dephosphorylation // inferred from direct assay /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0044387 // negative regulation of protein kinase activity by regulation of protein phosphorylation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045927 // positive regulation of growth // inferred from mutant phenotype /// 0050921 // positive regulation of chemotaxis // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0051894 // positive regulation of focal adhesion assembly // inferred from mutant phenotype /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay 0005829 // cytosol // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from direct assay /// 0033192 // calmodulin-dependent protein phosphatase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 201.90 156.33 13.38 0.00 0.00 -4.41
217094_s_at 217094_s_at AL109923 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL109923 /DEF=Human DNA sequence from clone RP3-468O1 on chromosome 20 Contains ESTs, STSs, GSSs and CpG islands. Contains a gene for the atrophin 1 interacting protein 4 (AIP4), a ferredoxin 1 (FDX1) pseudogene and part of a gene for an ortholog of Rattus norv... /FEA=CDS /DB_XREF=gi:8894632 /UG=Hs.98074 atrophin-1 interacting protein 4 AL109923 itchy E3 ubiquitin protein ligase ITCH 83737 NM_001257137 /// NM_001257138 /// NM_031483 /// XM_005260570 /// XM_006723881 /// XM_006723882 /// XR_244153 /// XR_430315 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0001558 // regulation of cell growth // non-traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002669 // positive regulation of T cell anergy // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0035519 // protein K29-linked ubiquitination // inferred from direct assay /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from sequence or structural similarity /// 0046642 // negative regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046718 // viral entry into host cell // traceable author statement /// 0050687 // negative regulation of defense response to virus // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from electronic annotation /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0090085 // regulation of protein deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0043021 // ribonucleoprotein complex binding // inferred from physical interaction /// 0045236 // CXCR chemokine receptor binding // inferred from physical interaction -124.37 134.91 -13.37 0.00 0.00 -4.41
209099_x_at 209099_x_at U73936 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U73936.1 /DEF=Homo sapiens Jagged 1 (HJ1) mRNA, complete cds. /FEA=mRNA /GEN=HJ1 /PROD=Jagged 1 /DB_XREF=gi:1695273 /UG=Hs.91143 jagged 1 (Alagille syndrome) /FL=gb:U61276.1 gb:U73936.1 gb:AF003837.1 gb:AF028593.1 gb:NM_000214.1 U73936 jagged 1 JAG1 182 NM_000214 0001525 // angiogenesis // non-traceable author statement /// 0001709 // cell fate determination // non-traceable author statement /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002456 // T cell mediated immunity // inferred from mutant phenotype /// 0003184 // pulmonary valve morphogenesis // inferred from mutant phenotype /// 0003215 // cardiac right ventricle morphogenesis // inferred from sequence or structural similarity /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // non-traceable author statement /// 0007399 // nervous system development // non-traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0030097 // hemopoiesis // non-traceable author statement /// 0030216 // keratinocyte differentiation // non-traceable author statement /// 0030334 // regulation of cell migration // non-traceable author statement /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0035909 // aorta morphogenesis // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0045445 // myoblast differentiation // non-traceable author statement /// 0045446 // endothelial cell differentiation // non-traceable author statement /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045639 // positive regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from electronic annotation /// 0060411 // cardiac septum morphogenesis // inferred from sequence or structural similarity /// 0061156 // pulmonary artery morphogenesis // inferred from mutant phenotype /// 0061309 // cardiac neural crest cell development involved in outflow tract morphogenesis // inferred from sequence or structural similarity /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0061314 // Notch signaling involved in heart development // inferred from mutant phenotype /// 0061444 // endocardial cushion cell development // inferred from sequence or structural similarity /// 0072017 // distal tubule development // inferred from electronic annotation /// 0072070 // loop of Henle development // inferred from electronic annotation /// 0097150 // neuronal stem cell maintenance // inferred from expression pattern /// 2000737 // negative regulation of stem cell differentiation // inferred from mutant phenotype 0005576 // extracellular region // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation 0005112 // Notch binding // non-traceable author statement /// 0005198 // structural molecule activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // non-traceable author statement -1225.20 868.88 -13.35 0.00 0.00 -4.41
208693_s_at 208693_s_at D30658 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D30658.1 /DEF=Human T-cell mRNA for glycyl tRNA synthetase, complete cds. /FEA=mRNA /PROD=glycyl tRNA synthetase /DB_XREF=gi:577711 /UG=Hs.75280 glycyl-tRNA synthetase /FL=gb:D30658.1 gb:U09587.1 gb:NM_002047.1 D30658 glycyl-tRNA synthetase GARS 2617 NM_002047 /// XM_006715686 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006426 // glycyl-tRNA aminoacylation // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0030141 // secretory granule // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004820 // glycine-tRNA ligase activity // inferred from direct assay /// 0004820 // glycine-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from direct assay -989.35 1295.00 -13.34 0.00 0.00 -4.41
202842_s_at 202842_s_at AL080081 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL080081.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564F1862 (from clone DKFZp564F1862); complete cds. /FEA=mRNA /GEN=DKFZp564F1862 /PROD=hypothetical protein /DB_XREF=gi:5262493 /UG=Hs.6790 DnaJ (Hsp40) homolog, subfamily B, member 9 /FL=gb:AF083247.1 gb:AL080081.1 gb:AB026908.1 gb:NM_012328.1 AL080081 DnaJ (Hsp40) homolog, subfamily B, member 9 DNAJB9 4189 NM_012328 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0051787 // misfolded protein binding // inferred from direct assay -583.98 566.11 -13.30 0.00 0.00 -4.41
203868_s_at 203868_s_at NM_001078 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001078.1 /DEF=Homo sapiens vascular cell adhesion molecule 1 (VCAM1), mRNA. /FEA=mRNA /GEN=VCAM1 /PROD=vascular cell adhesion molecule 1 /DB_XREF=gi:4507874 /UG=Hs.109225 vascular cell adhesion molecule 1 /FL=gb:M60335.1 gb:NM_001078.1 NM_001078 vascular cell adhesion molecule 1 VCAM1 7412 NM_001078 /// NM_001199834 /// NM_080682 0001666 // response to hypoxia // inferred from electronic annotation /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002544 // chronic inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from direct assay /// 0007157 // heterophilic cell-cell adhesion // inferred from direct assay /// 0007159 // leukocyte cell-cell adhesion // inferred from direct assay /// 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0009308 // amine metabolic process // inferred from direct assay /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0022614 // membrane to membrane docking // inferred from expression pattern /// 0030183 // B cell differentiation // inferred by curator /// 0030198 // extracellular matrix organization // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0035094 // response to nicotine // inferred from electronic annotation /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0045471 // response to ethanol // inferred from electronic annotation /// 0050776 // regulation of immune response // traceable author statement /// 0050901 // leukocyte tethering or rolling // inferred from expression pattern /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060669 // embryonic placenta morphogenesis // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation 0002102 // podosome // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005902 // microvillus // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071065 // alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex // inferred from direct assay /// 0071944 // cell periphery // inferred from electronic annotation 0005178 // integrin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // inferred from direct assay /// 0050839 // cell adhesion molecule binding // inferred from direct assay /// 0050839 // cell adhesion molecule binding // inferred from physical interaction -1690.55 886.70 -13.26 0.00 0.00 -4.41
203752_s_at 203752_s_at NM_005354 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005354.2 /DEF=Homo sapiens jun D proto-oncogene (JUND), mRNA. /FEA=mRNA /GEN=JUND /PROD=jun D proto-oncogene /DB_XREF=gi:10938013 /UG=Hs.2780 jun D proto-oncogene /FL=gb:NM_005354.2 NM_005354 jun D proto-oncogene JUND 3727 NM_001286968 /// NM_005354 0002076 // osteoblast development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0000785 // chromatin // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay 392.13 671.01 13.24 0.00 0.00 -4.41
202084_s_at 202084_s_at NM_003003 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003003.1 /DEF=Homo sapiens SEC14 (S. cerevisiae)-like 1 (SEC14L1), mRNA. /FEA=mRNA /GEN=SEC14L1 /PROD=SEC14 (S. cerevisiae)-like 1 /DB_XREF=gi:4506866 /UG=Hs.75232 SEC14 (S. cerevisiae)-like 1 /FL=gb:D67029.1 gb:NM_003003.1 NM_003003 SEC14-like 1 (S. cerevisiae) SEC14L1 6397 NM_001039573 /// NM_001143998 /// NM_001143999 /// NM_001144001 /// NM_001204408 /// NM_001204410 /// NM_003003 0006810 // transport // inferred from electronic annotation 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 375.05 888.60 13.24 0.00 0.00 -4.41
201738_at 201738_at NM_005875 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005875.1 /DEF=Homo sapiens translation factor sui1 homolog (GC20), mRNA. /FEA=mRNA /GEN=GC20 /PROD=translation factor sui1 homolog /DB_XREF=gi:5031710 /UG=Hs.21756 translation factor sui1 homolog /FL=gb:AF064607.1 gb:AF077052.1 gb:NM_005875.1 gb:AF263452.1 NM_005875 eukaryotic translation initiation factor 1B EIF1B 10289 NM_005875 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // non-traceable author statement 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -213.83 398.31 -13.23 0.00 0.00 -4.41
209183_s_at 209183_s_at AL136653 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136653.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564P1263 (from clone DKFZp564P1263); complete cds. /FEA=mRNA /GEN=DKFZp564P1263 /PROD=hypothetical protein /DB_XREF=gi:6807650 /UG=Hs.93675 decidual protein induced by progesterone /FL=gb:AB022718.1 gb:NM_007021.1 gb:AL136653.1 AL136653 chromosome 10 open reading frame 10 C10orf10 11067 NM_007021 0005739 // mitochondrion // inferred from direct assay -346.55 547.58 -13.22 0.00 0.00 -4.41
202510_s_at 202510_s_at NM_006291 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006291.1 /DEF=Homo sapiens tumor necrosis factor, alpha-induced protein 2 (TNFAIP2), mRNA. /FEA=mRNA /GEN=TNFAIP2 /PROD=tumor necrosis factor, alpha-induced protein 2 /DB_XREF=gi:5454133 /UG=Hs.101382 tumor necrosis factor, alpha-induced protein 2 /FL=gb:M92357.1 gb:NM_006291.1 NM_006291 tumor necrosis factor, alpha-induced protein 2 TNFAIP2 7127 NM_006291 /// XM_006720243 0001525 // angiogenesis // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0000145 // exocyst // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement -713.33 475.86 -13.21 0.00 0.00 -4.41
213489_at 213489_at BE671156 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE671156 /FEA=EST /DB_XREF=gi:10031697 /DB_XREF=est:7e46f09.x1 /CLONE=IMAGE:3285545 /UG=Hs.78335 microtubule-associated protein, RPEB family, member 2 BE671156 microtubule-associated protein, RP/EB family, member 2 MAPRE2 10982 NM_001143826 /// NM_001143827 /// NM_001256420 /// NM_014268 /// NR_046177 /// XM_006722375 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation 186.67 143.31 13.18 0.00 0.00 -4.41
201939_at 201939_at NM_006622 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006622.1 /DEF=Homo sapiens serum-inducible kinase (SNK), mRNA. /FEA=mRNA /GEN=SNK /PROD=serum-inducible kinase /DB_XREF=gi:5730054 /UG=Hs.3838 serum-inducible kinase /FL=gb:AF059617.1 gb:NM_006622.1 gb:AF223574.1 NM_006622 polo-like kinase 2 PLK2 10769 NM_001252226 /// NM_006622 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007052 // mitotic spindle organization // inferred from direct assay /// 0007093 // mitotic cell cycle checkpoint // inferred from sequence or structural similarity /// 0007265 // Ras protein signal transduction // inferred from sequence or structural similarity /// 0007613 // memory // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032486 // Rap protein signal transduction // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0046599 // regulation of centriole replication // inferred from direct assay /// 0046599 // regulation of centriole replication // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from sequence or structural similarity /// 0060291 // long-term synaptic potentiation // inferred from sequence or structural similarity /// 0060292 // long term synaptic depression // inferred from sequence or structural similarity 0005622 // intracellular // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005814 // centriole // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -294.75 683.23 -13.15 0.00 0.00 -4.41
200893_at 200893_at NM_004593 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004593.1 /DEF=Homo sapiens splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 (SFRS10), mRNA. /FEA=mRNA /GEN=SFRS10 /PROD=splicing factor, arginineserine-rich(transformer 2 Drosophila homolog) 10 /DB_XREF=gi:4759097 /UG=Hs.30035 splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 /FL=gb:BC000160.1 gb:BC000451.1 gb:U61267.1 gb:U68063.1 gb:NM_004593.1 NM_004593 transformer 2 beta homolog (Drosophila) TRA2B 6434 NM_001243879 /// NM_004593 /// XM_005247703 /// XM_006713724 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0048026 // positive regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 362.95 613.70 13.05 0.00 0.00 -4.41
201542_at 201542_at AY008268 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AY008268.1 /DEF=Homo sapiens GTP-binding protein SAR1 (SAR1) mRNA, complete cds. /FEA=mRNA /GEN=SAR1 /PROD=GTP-binding protein SAR1 /DB_XREF=gi:10445220 /UG=Hs.110796 SAR1 protein /FL=gb:AY008268.1 gb:AL136724.1 gb:AF261717.1 gb:NM_020150.1 AY008268 secretion associated, Ras related GTPase 1A SAR1A 56681 NM_001142648 /// NM_020150 0006184 // GTP catabolic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // non-traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation 230.90 249.90 13.04 0.00 0.00 -4.41
200758_s_at 200758_s_at AI361227 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI361227 /FEA=EST /DB_XREF=gi:4112848 /DB_XREF=est:qy12a07.x1 /CLONE=IMAGE:2011764 /UG=Hs.83469 nuclear factor (erythroid-derived 2)-like 1 /FL=gb:NM_003204.1 gb:U08853.1 AI361227 nuclear factor, erythroid 2-like 1 NFE2L1 4779 NM_003204 /// XM_005257410 /// XM_005257411 /// XM_005257412 /// XM_005257413 /// XM_005257415 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006783 // heme biosynthetic process // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -377.48 570.74 -13.03 0.00 0.00 -4.41
217746_s_at 217746_s_at NM_013374 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013374.1 /DEF=Homo sapiens programmed cell death 6-interacting protein (PDCD6IP), mRNA. /FEA=mRNA /GEN=PDCD6IP /PROD=programmed cell death 6-interacting protein /DB_XREF=gi:7019486 /UG=Hs.9663 programmed cell death 6-interacting protein /FL=gb:AF349951.1 gb:AF151793.1 gb:NM_013374.1 NM_013374 programmed cell death 6 interacting protein PDCD6IP 10015 NM_001162429 /// NM_001256192 /// NM_013374 /// NR_027867 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0001772 // immunological synapse // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -200.77 642.64 -13.03 0.00 0.00 -4.41
209015_s_at 209015_s_at BC002446 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002446.1 /DEF=Homo sapiens, MRJ gene for a member of the DNAJ protein family, clone MGC:1152, mRNA, complete cds. /FEA=mRNA /PROD=MRJ gene for a member of the DNAJ proteinfamily /DB_XREF=gi:12803262 /UG=Hs.181195 DnaJ (Hsp40) homolog, subfamily B, member 6 /FL=gb:BC002446.1 gb:AB015798.1 BC002446 DnaJ (Hsp40) homolog, subfamily B, member 6 DNAJB6 10049 NM_005494 /// NM_058246 /// XM_005249515 /// XM_005249516 /// XM_006715823 0006457 // protein folding // inferred from direct assay /// 0006986 // response to unfolded protein // non-traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0034504 // protein localization to nucleus // inferred from electronic annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0045109 // intermediate filament organization // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0060715 // syncytiotrophoblast cell differentiation involved in labyrinthine layer development // inferred from electronic annotation /// 0060717 // chorion development // inferred from electronic annotation /// 0090084 // negative regulation of inclusion body assembly // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001671 // ATPase activator activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction -200.13 215.61 -12.97 0.00 0.00 -4.41
201324_at 201324_at NM_001423 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001423.1 /DEF=Homo sapiens epithelial membrane protein 1 (EMP1), mRNA. /FEA=mRNA /GEN=EMP1 /PROD=epithelial membrane protein 1 /DB_XREF=gi:4503558 /UG=Hs.79368 epithelial membrane protein 1 /FL=gb:U77085.1 gb:U43916.1 gb:NM_001423.1 NM_001423 epithelial membrane protein 1 EMP1 2012 NM_001423 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008544 // epidermis development // traceable author statement /// 0016049 // cell growth // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 284.67 500.44 12.96 0.00 0.00 -4.41
212171_x_at 212171_x_at H95344 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:H95344 /FEA=EST /DB_XREF=gi:1102977 /DB_XREF=est:yu21b08.s1 /CLONE=IMAGE:234423 /UG=Hs.73793 vascular endothelial growth factor /FL=gb:AF214570.1 H95344 vascular endothelial growth factor A VEGFA 7422 NM_001025366 /// NM_001025367 /// NM_001025368 /// NM_001025369 /// NM_001025370 /// NM_001033756 /// NM_001171622 /// NM_001171623 /// NM_001171624 /// NM_001171625 /// NM_001171626 /// NM_001171627 /// NM_001171628 /// NM_001171629 /// NM_001171630 /// NM_001204384 /// NM_001204385 /// NM_001287044 /// NM_003376 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001525 // angiogenesis // inferred from direct assay /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // traceable author statement /// 0001666 // response to hypoxia // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001822 // kidney development // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001944 // vasculature development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0002052 // positive regulation of neuroblast proliferation // inferred from sequence or structural similarity /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0002092 // positive regulation of receptor internalization // inferred from direct assay /// 0002575 // basophil chemotaxis // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0002687 // positive regulation of leukocyte migration // traceable author statement /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003169 // coronary vein morphogenesis // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007498 // mesoderm development // inferred from sequence or structural similarity /// 0007595 // lactation // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008360 // regulation of cell shape // inferred from direct assay /// 0009409 // response to cold // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0016477 // cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from direct assay /// 0030225 // macrophage differentiation // inferred from direct assay /// 0030324 // lung development // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from sequence or structural similarity /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0031077 // post-embryonic camera-type eye development // inferred from sequence or structural similarity /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0032793 // positive regulation of CREB transcription factor activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0035148 // tube formation // inferred from direct assay /// 0035767 // endothelial cell chemotaxis // inferred from direct assay /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from direct assay /// 0036303 // lymph vessel morphogenesis // inferred from sequence or structural similarity /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from direct assay /// 0038091 // positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway // inferred from direct assay /// 0038190 // VEGF-activated neuropilin signaling pathway // inferred from sequence or structural similarity /// 0040007 // growth // inferred from sequence or structural similarity /// 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043069 // negative regulation of programmed cell death // inferred from electronic annotation /// 0043117 // positive regulation of vascular permeability // inferred from direct assay /// 0043129 // surfactant homeostasis // inferred from sequence or structural similarity /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0048255 // mRNA stabilization // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048469 // cell maturation // inferred from sequence or structural similarity /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from sequence or structural similarity /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // inferred from sequence or structural similarity /// 0048754 // branching morphogenesis of an epithelial tube // inferred from sequence or structural similarity /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0050679 // positive regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from direct assay /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // non-traceable author statement /// 0051272 // positive regulation of cellular component movement // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0060319 // primitive erythrocyte differentiation // inferred from sequence or structural similarity /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from sequence or structural similarity /// 0060754 // positive regulation of mast cell chemotaxis // inferred from direct assay /// 0060948 // cardiac vascular smooth muscle cell development // inferred from sequence or structural similarity /// 0060982 // coronary artery morphogenesis // inferred from sequence or structural similarity /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0061419 // positive regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement /// 0071542 // dopaminergic neuron differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 0090037 // positive regulation of protein kinase C signaling // inferred from direct assay /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0090259 // regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1900086 // positive regulation of peptidyl-tyrosine autophosphorylation // inferred from direct assay /// 1900745 // positive regulation of p38MAPK cascade // inferred from direct assay /// 1901492 // positive regulation of lymphangiogenesis // inferred from electronic annotation /// 1901727 // positive regulation of histone deacetylase activity // inferred from direct assay /// 1902336 // positive regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1902533 // positive regulation of intracellular signal transduction // inferred from direct assay /// 1902966 // positive regulation of protein localization to early endosome // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation 0001968 // fibronectin binding // inferred from direct assay /// 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005172 // vascular endothelial growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // inferred from mutant phenotype /// 0038191 // neuropilin binding // inferred from physical interaction /// 0042056 // chemoattractant activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043183 // vascular endothelial growth factor receptor 1 binding // inferred from physical interaction /// 0043184 // vascular endothelial growth factor receptor 2 binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048018 // receptor agonist activity // inferred from physical interaction /// 0050840 // extracellular matrix binding // inferred by curator -197.62 168.91 -12.90 0.00 0.00 -4.41
209295_at 209295_at AF016266 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF016266.1 /DEF=Homo sapiens TRAIL receptor 2 mRNA, complete cds. /FEA=mRNA /PROD=TRAIL receptor 2 /DB_XREF=gi:2529562 /UG=Hs.51233 tumor necrosis factor receptor superfamily, member 10b /FL=gb:BC001281.1 gb:AF018658.1 gb:AF016849.1 gb:AF016266.1 AF016266 tumor necrosis factor receptor superfamily, member 10b TNFRSF10B 8795 NM_003842 /// NM_147187 /// NR_027140 /// XM_006716409 0006915 // apoptotic process // non-traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007250 // activation of NF-kappaB-inducing kinase activity // non-traceable author statement /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0097190 // apoptotic signaling pathway // traceable author statement /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred by curator 0004872 // receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0045569 // TRAIL binding // non-traceable author statement -362.98 895.26 -12.89 0.00 0.00 -4.41
218665_at 218665_at NM_012193 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012193.1 /DEF=Homo sapiens frizzled (Drosophila) homolog 4 (FZD4), mRNA. /FEA=mRNA /GEN=FZD4 /PROD=frizzled (Drosophila) homolog 4 /DB_XREF=gi:6912383 /UG=Hs.19545 frizzled (Drosophila) homolog 4 /FL=gb:AB032417.1 gb:NM_012193.1 NM_012193 frizzled class receptor 4 FZD4 8322 NM_012193 0001553 // luteinization // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007223 // Wnt signaling pathway, calcium modulating pathway // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0009790 // embryo development // /// 0010812 // negative regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0016055 // Wnt signaling pathway // inferred from direct assay /// 0030182 // neuron differentiation // inferred from sequence or structural similarity /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0031987 // locomotion involved in locomotory behavior // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0035426 // extracellular matrix-cell signaling // inferred from electronic annotation /// 0042701 // progesterone secretion // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from direct assay /// 0061299 // retina vasculature morphogenesis in camera-type eye // inferred from mutant phenotype /// 0061301 // cerebellum vasculature morphogenesis // inferred from electronic annotation /// 0061304 // retinal blood vessel morphogenesis // inferred from electronic annotation /// 0071300 // cellular response to retinoic acid // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred by curator /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0042995 // cell projection // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // not recorded /// 0019955 // cytokine binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042813 // Wnt-activated receptor activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 256.02 356.41 12.84 0.00 0.00 -4.41
202068_s_at 202068_s_at NM_000527 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000527.2 /DEF=Homo sapiens low density lipoprotein receptor (familial hypercholesterolemia) (LDLR), mRNA. /FEA=mRNA /GEN=LDLR /PROD=low density lipoprotein receptor precursor /DB_XREF=gi:8051613 /UG=Hs.213289 low density lipoprotein receptor (familial hypercholesterolemia) /FL=gb:NM_000527.2 NM_000527 low density lipoprotein receptor LDLR 3949 NM_000527 /// NM_001195798 /// NM_001195799 /// NM_001195800 /// NM_001195802 /// NM_001195803 /// XR_244074 0001523 // retinoid metabolic process // traceable author statement /// 0006629 // lipid metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006897 // endocytosis // traceable author statement /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from sequence or structural similarity /// 0010899 // regulation of phosphatidylcholine catabolic process // inferred from sequence or structural similarity /// 0015914 // phospholipid transport // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0030299 // intestinal cholesterol absorption // inferred from mutant phenotype /// 0030301 // cholesterol transport // inferred from mutant phenotype /// 0034383 // low-density lipoprotein particle clearance // inferred from mutant phenotype /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0042159 // lipoprotein catabolic process // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0070508 // cholesterol import // inferred from sequence or structural similarity 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0010008 // endosome membrane // traceable author statement /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0005041 // low-density lipoprotein receptor activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030169 // low-density lipoprotein particle binding // inferred from electronic annotation /// 0030229 // very-low-density lipoprotein particle receptor activity // inferred from direct assay 257.57 213.41 12.82 0.00 0.00 -4.41
201000_at 201000_at NM_001605 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001605.1 /DEF=Homo sapiens alanyl-tRNA synthetase (AARS), mRNA. /FEA=mRNA /GEN=AARS /PROD=alanyl-tRNA synthetase /DB_XREF=gi:4501840 /UG=Hs.75102 alanyl-tRNA synthetase /FL=gb:D32050.1 gb:NM_001605.1 NM_001605 alanyl-tRNA synthetase AARS 16 NM_001605 /// XM_006721153 0001942 // hair follicle development // inferred from electronic annotation /// 0006400 // tRNA modification // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006419 // alanyl-tRNA aminoacylation // inferred from electronic annotation /// 0006450 // regulation of translational fidelity // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0008033 // tRNA processing // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0034620 // cellular response to unfolded protein // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050905 // neuromuscular process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0002161 // aminoacyl-tRNA editing activity // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004813 // alanine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -350.48 539.91 -12.79 0.00 0.00 -4.41
206237_s_at 206237_s_at NM_013957 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013957.1 /DEF=Homo sapiens neuregulin 1 (NRG1), transcript variant HRG-beta2, mRNA. /FEA=mRNA /GEN=NRG1 /PROD=neuregulin 1 isoform HRG-beta2 /DB_XREF=gi:7669513 /UG=Hs.172816 neuregulin 1 /FL=gb:M94167.1 gb:NM_013957.1 NM_013957 neuregulin 1 NRG1 3084 NM_001159995 /// NM_001159996 /// NM_001159999 /// NM_001160001 /// NM_001160002 /// NM_001160004 /// NM_001160005 /// NM_001160007 /// NM_001160008 /// NM_004495 /// NM_013956 /// NM_013957 /// NM_013958 /// NM_013959 /// NM_013960 /// NM_013962 /// NM_013964 /// XM_005273485 /// XM_005273486 /// XM_005273487 /// XM_006716335 0000165 // MAPK cascade // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0003161 // cardiac conduction system development // inferred from electronic annotation /// 0003222 // ventricular trabecula myocardium morphogenesis // inferred from direct assay /// 0007154 // cell communication // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from direct assay /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010667 // negative regulation of cardiac muscle cell apoptotic process // inferred from direct assay /// 0014032 // neural crest cell development // traceable author statement /// 0016477 // cell migration // inferred from electronic annotation /// 0021781 // glial cell fate commitment // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030879 // mammary gland development // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038127 // ERBB signaling pathway // inferred from direct assay /// 0042060 // wound healing // inferred from direct assay /// 0042060 // wound healing // traceable author statement /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0043496 // regulation of protein homodimerization activity // traceable author statement /// 0043497 // regulation of protein heterodimerization activity // inferred from direct assay /// 0043624 // cellular protein complex disassembly // inferred from genetic interaction /// 0045087 // innate immune response // traceable author statement /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0051048 // negative regulation of secretion // inferred from direct assay /// 0051155 // positive regulation of striated muscle cell differentiation // inferred from sequence or structural similarity /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from sequence or structural similarity /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from direct assay /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from direct assay /// 0060379 // cardiac muscle cell myoblast differentiation // inferred from direct assay /// 0060956 // endocardial cell differentiation // inferred from direct assay /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from direct assay 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003712 // transcription cofactor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005125 // cytokine activity // traceable author statement /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // non-traceable author statement /// 0030296 // protein tyrosine kinase activator activity // inferred from direct assay /// 0030297 // transmembrane receptor protein tyrosine kinase activator activity // inferred by curator /// 0030297 // transmembrane receptor protein tyrosine kinase activator activity // non-traceable author statement /// 0030971 // receptor tyrosine kinase binding // non-traceable author statement /// 0043125 // ErbB-3 class receptor binding // inferred from direct assay /// 0043125 // ErbB-3 class receptor binding // inferred from physical interaction -140.03 93.24 -12.78 0.00 0.00 -4.41
221891_x_at 221891_x_at AA704004 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA704004 /FEA=EST /DB_XREF=gi:2713922 /DB_XREF=est:ag46h11.s1 /CLONE=IMAGE:1119909 /UG=Hs.180414 heat shock 70kD protein 8 AA704004 heat shock 70kDa protein 8 /// small nucleolar RNA, C/D box 14C /// small nucleolar RNA, C/D box 14D HSPA8 /// SNORD14C /// SNORD14D 3312 /// 85389 /// 85390 NM_006597 /// NM_153201 /// NR_001453 /// NR_001454 /// XM_006718831 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006457 // protein folding // non-traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042026 // protein refolding // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 1902904 // negative regulation of fibril organization // inferred from direct assay 0000974 // Prp19 complex // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0061202 // clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0042623 // ATPase activity, coupled // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay 1026.42 1361.54 12.77 0.00 0.00 -4.41
204076_at 204076_at AB002390 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB002390.1 /DEF=Human mRNA for KIAA0392 gene, partial cds. /FEA=mRNA /GEN=KIAA0392 /DB_XREF=gi:2280487 /UG=Hs.201377 apyrase, lysosomal /FL=gb:AF016032.1 gb:NM_004901.1 AB002390 ectonucleoside triphosphate diphosphohydrolase 4 ENTPD4 9583 NM_001128930 /// NM_004901 0006256 // UDP catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0045134 // uridine-diphosphatase activity // inferred from direct assay 172.98 121.29 12.70 0.00 0.00 -4.41
221009_s_at 221009_s_at NM_016109 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016109.1 /DEF=Homo sapiens PPAR(gamma) angiopoietin related protein (PGAR), mRNA. /FEA=mRNA /GEN=PGAR /PROD=PPAR(gamma) angiopoietin related protein /DB_XREF=gi:7705828 /UG=Hs.9613 PPAR(gamma) angiopoietin related protein /FL=gb:AF153606.1 gb:NM_016109.1 NM_016109 angiopoietin-like 4 ANGPTL4 51129 NM_001039667 /// NM_016109 /// NM_139314 /// NR_104213 /// XM_005272484 /// XM_005272485 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045766 // positive regulation of angiogenesis // traceable author statement /// 0051005 // negative regulation of lipoprotein lipase activity // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0070328 // triglyceride homeostasis // inferred from sequence or structural similarity /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from electronic annotation 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction -931.03 525.19 -12.69 0.00 0.00 -4.42
220731_s_at 220731_s_at NM_018090 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018090.1 /DEF=Homo sapiens hypothetical protein FLJ10420 (FLJ10420), mRNA. /FEA=mRNA /GEN=FLJ10420 /PROD=hypothetical protein FLJ10420 /DB_XREF=gi:8922415 /UG=Hs.289087 hypothetical protein FLJ10420 /FL=gb:NM_018090.1 NM_018090 NECAP endocytosis associated 2 NECAP2 55707 NM_001145277 /// NM_001145278 /// NM_018090 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // inferred from sequence or structural similarity /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation -177.60 404.60 -12.62 0.00 0.00 -4.42
202643_s_at 202643_s_at AI738896 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI738896 /FEA=EST /DB_XREF=gi:5100877 /DB_XREF=est:wi22g02.x1 /CLONE=IMAGE:2391026 /UG=Hs.211600 tumor necrosis factor, alpha-induced protein 3 /FL=gb:M59465.1 gb:NM_006290.1 AI738896 tumor necrosis factor, alpha-induced protein 3 TNFAIP3 7128 NM_001270507 /// NM_001270508 /// NM_006290 /// XM_005267119 /// XM_006715555 0001922 // B-1 B cell homeostasis // inferred from sequence or structural similarity /// 0002237 // response to molecule of bacterial origin // inferred from direct assay /// 0002634 // regulation of germinal center formation // inferred from sequence or structural similarity /// 0002677 // negative regulation of chronic inflammatory response // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032691 // negative regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032703 // negative regulation of interleukin-2 production // inferred from mutant phenotype /// 0032715 // negative regulation of interleukin-6 production // inferred from sequence or structural similarity /// 0032720 // negative regulation of tumor necrosis factor production // inferred from sequence or structural similarity /// 0034136 // negative regulation of toll-like receptor 2 signaling pathway // non-traceable author statement /// 0034140 // negative regulation of toll-like receptor 3 signaling pathway // inferred from direct assay /// 0034144 // negative regulation of toll-like receptor 4 signaling pathway // non-traceable author statement /// 0034148 // negative regulation of toll-like receptor 5 signaling pathway // inferred from electronic annotation /// 0035871 // protein K11-linked deubiquitination // inferred from direct assay /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // non-traceable author statement /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // non-traceable author statement /// 0045824 // negative regulation of innate immune response // inferred from sequence or structural similarity /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050691 // regulation of defense response to virus by host // non-traceable author statement /// 0050728 // negative regulation of inflammatory response // inferred from sequence or structural similarity /// 0050869 // negative regulation of B cell activation // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // non-traceable author statement /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0061043 // regulation of vascular wound healing // non-traceable author statement /// 0070301 // cellular response to hydrogen peroxide // inferred from sequence or structural similarity /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070429 // negative regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway // inferred from electronic annotation /// 0070433 // negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0071108 // protein K48-linked deubiquitination // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0072573 // tolerance induction to lipopolysaccharide // inferred from mutant phenotype /// 0090291 // negative regulation of osteoclast proliferation // non-traceable author statement /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000347 // positive regulation of hepatocyte proliferation // inferred from electronic annotation /// 2000349 // negative regulation of CD40 signaling pathway // inferred from mutant phenotype /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from physical interaction /// 0043621 // protein self-association // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -206.45 149.47 -12.60 0.00 0.00 -4.42
202499_s_at 202499_s_at NM_006931 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006931.1 /DEF=Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 3 (SLC2A3), mRNA. /FEA=mRNA /GEN=SLC2A3 /PROD=solute carrier family 2 (facilitated glucosetransporter), member 3 /DB_XREF=gi:5902089 /UG=Hs.7594 solute carrier family 2 (facilitated glucose transporter), member 3 /FL=gb:M20681.1 gb:NM_006931.1 NM_006931 solute carrier family 2 (facilitated glucose transporter), member 3 SLC2A3 6515 NM_006931 0005975 // carbohydrate metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0019852 // L-ascorbic acid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation -234.22 140.74 -12.59 0.00 0.00 -4.42
201865_x_at 201865_x_at AI432196 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI432196 /FEA=EST /DB_XREF=gi:4308490 /DB_XREF=est:tg77g05.x1 /CLONE=IMAGE:2114840 /UG=Hs.75772 nuclear receptor subfamily 3, group C, member 1 /FL=gb:M10901.1 gb:NM_000176.1 AI432196 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) NR3C1 2908 NM_000176 /// NM_001018074 /// NM_001018075 /// NM_001018076 /// NM_001018077 /// NM_001020825 /// NM_001024094 /// NM_001204258 /// NM_001204259 /// NM_001204260 /// NM_001204261 /// NM_001204262 /// NM_001204263 /// NM_001204264 /// NM_001204265 /// XM_005268419 /// XM_005268420 /// XM_005268421 /// XM_005268422 /// XM_005268423 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0031946 // regulation of glucocorticoid biosynthetic process // inferred from electronic annotation /// 0042921 // glucocorticoid receptor signaling pathway // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0043402 // glucocorticoid mediated signaling pathway // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004883 // glucocorticoid receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -281.70 266.40 -12.59 0.00 0.00 -4.42
208893_s_at 208893_s_at BC005047 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005047.1 /DEF=Homo sapiens, clone MGC:12852, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:12852) /DB_XREF=gi:13477170 /UG=Hs.180383 dual specificity phosphatase 6 /FL=gb:BC003562.1 gb:BC003143.1 gb:BC005047.1 gb:AB013382.1 gb:NM_001946.1 BC005047 dual specificity phosphatase 6 DUSP6 1848 NM_001946 /// NM_022652 0000188 // inactivation of MAPK activity // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042663 // regulation of endodermal cell fate specification // not recorded /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051409 // response to nitrosative stress // inferred from expression pattern /// 0060420 // regulation of heart growth // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0070848 // response to growth factor // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from direct assay -377.72 430.49 -12.58 0.00 0.00 -4.42
211956_s_at 211956_s_at BF246436 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF246436 /FEA=EST /DB_XREF=gi:11160799 /DB_XREF=est:601854870F1 /CLONE=IMAGE:4074785 /UG=Hs.150580 putative translation initiation factor BF246436 eukaryotic translation initiation factor 1 EIF1 10209 NM_005801 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // traceable author statement /// 0006950 // response to stress // non-traceable author statement /// 0009048 // dosage compensation by inactivation of X chromosome // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement 0003743 // translation initiation factor activity // non-traceable author statement /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -1282.10 3401.43 -12.52 0.00 0.00 -4.42
218736_s_at 218736_s_at NM_017734 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017734.1 /DEF=Homo sapiens hypothetical protein FLJ20271 (FLJ20271), mRNA. /FEA=mRNA /GEN=FLJ20271 /PROD=hypothetical protein FLJ20271 /DB_XREF=gi:8923242 /UG=Hs.14606 hypothetical protein FLJ20271 /FL=gb:NM_017734.1 NM_017734 palmdelphin PALMD 54873 NM_017734 0008360 // regulation of cell shape // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 173.65 237.75 12.48 0.00 0.00 -4.42
212230_at 212230_at AV725664 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV725664 /FEA=EST /DB_XREF=gi:10831279 /DB_XREF=est:AV725664 /CLONE=HTCAOD07 /UG=Hs.173717 Homo sapiens phosphatidic acid phosphatase type 2B (PPAP2B), mRNA AV725664 phosphatidic acid phosphatase type 2B PPAP2B 8613 NM_003713 /// NM_177414 0001568 // blood vessel development // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008354 // germ cell migration // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030111 // regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0034109 // homotypic cell-cell adhesion // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0044328 // canonical Wnt signaling pathway involved in positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0044329 // canonical Wnt signaling pathway involved in positive regulation of cell-cell adhesion // inferred from mutant phenotype /// 0044330 // canonical Wnt signaling pathway involved in positive regulation of wound healing // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005912 // adherens junction // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // traceable author statement /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // inferred from electronic annotation -198.10 176.55 -12.46 0.00 0.00 -4.42
202353_s_at 202353_s_at NM_002816 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002816.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 (PSMD12), mRNA. /FEA=mRNA /GEN=PSMD12 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 12 /DB_XREF=gi:4506220 /UG=Hs.4295 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 /FL=gb:AB003103.1 gb:NM_002816.1 NM_002816 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 PSMD12 5718 NM_002816 /// NM_174871 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 156.15 163.62 12.46 0.00 0.00 -4.42
205205_at 205205_at NM_006509 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006509.1 /DEF=Homo sapiens v-rel avian reticuloendotheliosis viral oncogene homolog B (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3) (RELB), mRNA. /FEA=mRNA /GEN=RELB /PROD=v-rel avian reticuloendotheliosis viral oncogenehomolog B (nuclear factor of kappa light polypeptide geneenhancer in B-cells 3) /DB_XREF=gi:5730006 /UG=Hs.858 v-rel avian reticuloendotheliosis viral oncogene homolog B (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3) /FL=gb:M83221.1 gb:NM_006509.1 NM_006509 v-rel avian reticuloendotheliosis viral oncogene homolog B RELB 5971 NM_006509 /// XM_005259127 /// XM_005259128 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0045063 // T-helper 1 cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -165.30 119.40 -12.45 0.00 0.00 -4.42
37028_at 37028_at U83981 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U83981:Homo sapiens apoptosis associated protein (GADD34) mRNA, complete cds /cds=(222,2246) /gb=U83981 /gi=3258617 /ug=Hs.76556 /len=2331 U83981 protein phosphatase 1, regulatory subunit 15A PPP1R15A 23645 NM_014330 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // traceable author statement /// 0007050 // cell cycle arrest // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction -369.27 369.49 -12.44 0.00 0.00 -4.42
211676_s_at 211676_s_at AF056979 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF056979.1 /DEF=Homo sapiens clone YAN1 interferon-gamma receptor mRNA, complete cds. /FEA=mRNA /PROD=interferon-gamma receptor /DB_XREF=gi:13562048 /FL=gb:AF056979.1 AF056979 interferon gamma receptor 1 IFNGR1 3459 NM_000416 /// XM_006715470 /// XM_006715471 0007165 // signal transduction // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation 0004906 // interferon-gamma receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019955 // cytokine binding // inferred from electronic annotation -159.68 167.34 -12.35 0.00 0.00 -4.42
212907_at 212907_at AI972416 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI972416 /FEA=EST /DB_XREF=gi:5769332 /DB_XREF=est:wr39d10.x1 /CLONE=IMAGE:2490067 /UG=Hs.24385 Human hbc647 mRNA sequence AI972416 solute carrier family 30 (zinc transporter), member 1 SLC30A1 7779 NM_021194 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from sequence or structural similarity /// 0006882 // cellular zinc ion homeostasis // inferred from sequence or structural similarity /// 0046929 // negative regulation of neurotransmitter secretion // inferred from sequence or structural similarity /// 0055085 // transmembrane transport // traceable author statement /// 0070509 // calcium ion import // inferred from electronic annotation /// 0070574 // cadmium ion transmembrane transport // inferred from sequence or structural similarity /// 0071577 // zinc ion transmembrane transport // inferred from electronic annotation /// 0071584 // negative regulation of zinc ion transmembrane import // inferred from sequence or structural similarity /// 0071585 // detoxification of cadmium ion // inferred from electronic annotation /// 0090281 // negative regulation of calcium ion import // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from direct assay 0005385 // zinc ion transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // inferred from sequence or structural similarity -304.25 349.88 -12.35 0.00 0.00 -4.42
212412_at 212412_at AV715767 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV715767 /FEA=EST /DB_XREF=gi:10797284 /DB_XREF=est:AV715767 /CLONE=DCBATH02 /UG=Hs.7780 Homo sapiens mRNA; cDNA DKFZp564A072 (from clone DKFZp564A072) AV715767 PDZ and LIM domain 5 PDLIM5 10611 NM_001011513 /// NM_001011515 /// NM_001011516 /// NM_001256425 /// NM_001256426 /// NM_001256427 /// NM_001256428 /// NM_001256429 /// NM_006457 /// NR_046186 /// XM_005262693 /// XM_005262695 /// XM_005262696 /// XM_005262698 /// XM_006714066 /// XM_006714067 /// XM_006714068 /// XM_006714069 /// XM_006714070 0051963 // regulation of synapse assembly // inferred from sequence or structural similarity /// 0061001 // regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 494.80 713.77 12.33 0.00 0.00 -4.42
202464_s_at 202464_s_at NM_004566 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004566.1 /DEF=Homo sapiens 6-phosphofructo-2-kinasefructose-2,6-biphosphatase 3 (PFKFB3), mRNA. /FEA=mRNA /GEN=PFKFB3 /PROD=6-phosphofructo-2-kinasefructose-2,6-biphosphatase 3 /DB_XREF=gi:4758899 /UG=Hs.195471 6-phosphofructo-2-kinasefructose-2,6-biphosphatase 3 /FL=gb:D49817.1 gb:AF109735.1 gb:NM_004566.1 NM_004566 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 PFKFB3 5209 NM_001145443 /// NM_001282630 /// NM_004566 /// XM_005252463 /// XM_005252464 0005975 // carbohydrate metabolic process // traceable author statement /// 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // traceable author statement /// 0006096 // glycolytic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // non-traceable author statement /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -443.00 349.95 -12.33 0.00 0.00 -4.42
212118_at 212118_at AL523814 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523814 /FEA=EST /DB_XREF=gi:12787307 /DB_XREF=est:AL523814 /CLONE=CS0DC003YH03 (3 prime) /UG=Hs.142653 ret finger protein /FL=gb:AF230393.1 gb:J03407.1 gb:NM_006510.1 AL523814 tripartite motif containing 27 TRIM27 5987 NM_006510 /// NM_030950 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002820 // negative regulation of adaptive immune response // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0032720 // negative regulation of tumor necrosis factor production // inferred from mutant phenotype /// 0032897 // negative regulation of viral transcription // inferred from direct assay /// 0034314 // Arp2/3 complex-mediated actin nucleation // inferred from direct assay /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay /// 0045087 // innate immune response // inferred from direct assay /// 0045814 // negative regulation of gene expression, epigenetic // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0070206 // protein trimerization // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from mutant phenotype /// 0072643 // interferon-gamma secretion // inferred from mutant phenotype /// 0090281 // negative regulation of calcium ion import // inferred from mutant phenotype /// 1900041 // negative regulation of interleukin-2 secretion // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016605 // PML body // inferred from electronic annotation /// 0030904 // retromer complex // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0003676 // nucleic acid binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // traceable author statement 114.53 121.84 12.29 0.00 0.00 -4.42
212796_s_at 212796_s_at BF195608 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF195608 /FEA=EST /DB_XREF=gi:11082676 /DB_XREF=est:7n85f03.x1 /CLONE=IMAGE:3571349 /UG=Hs.126084 KIAA1055 protein BF195608 TBC1 domain family, member 2B TBC1D2B 23102 NM_015079 /// NM_144572 /// XM_005254242 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation 117.50 121.47 12.25 0.00 0.00 -4.42
213227_at 213227_at BE879873 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE879873 /FEA=EST /DB_XREF=gi:10328649 /DB_XREF=est:601491389F1 /CLONE=IMAGE:3893302 /UG=Hs.9071 progesterone membrane binding protein BE879873 progesterone receptor membrane component 2 PGRMC2 10424 NM_006320 0043401 // steroid hormone mediated signaling pathway // traceable author statement 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003707 // steroid hormone receptor activity // traceable author statement /// 0005496 // steroid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 99.85 77.65 12.25 0.00 0.00 -4.42
203275_at 203275_at NM_002199 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002199.2 /DEF=Homo sapiens interferon regulatory factor 2 (IRF2), mRNA. /FEA=mRNA /GEN=IRF2 /PROD=interferon regulatory factor 2 /DB_XREF=gi:4755144 /UG=Hs.83795 interferon regulatory factor 2 /FL=gb:NM_002199.2 NM_002199 interferon regulatory factor 2 IRF2 3660 NM_002199 /// XM_005262984 /// XM_005262986 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005925 // focal adhesion // inferred from direct assay 0000975 // regulatory region DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction -161.10 176.07 -12.18 0.00 0.00 -4.42
203999_at 203999_at AV731490 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV731490 /FEA=EST /DB_XREF=gi:10840911 /DB_XREF=est:AV731490 /CLONE=HTFAZD04 /UG=Hs.154679 synaptotagmin I /FL=gb:M55047.1 gb:NM_005639.1 AV731490 synaptotagmin I SYT1 6857 NM_001135805 /// NM_001135806 /// NM_001291901 /// NM_005639 /// XM_005269113 /// XM_006719576 0005513 // detection of calcium ion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0014047 // glutamate secretion // traceable author statement /// 0016079 // synaptic vesicle exocytosis // inferred from electronic annotation /// 0017157 // regulation of exocytosis // traceable author statement /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // inferred from electronic annotation /// 0045956 // positive regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0048278 // vesicle docking // inferred from electronic annotation /// 0051260 // protein homooligomerization // traceable author statement /// 0051592 // response to calcium ion // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0008021 // synaptic vesicle // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030141 // secretory granule // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031045 // dense core granule // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042584 // chromaffin granule membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043229 // intracellular organelle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from electronic annotation /// 0060201 // clathrin-sculpted acetylcholine transport vesicle membrane // traceable author statement /// 0060203 // clathrin-sculpted glutamate transport vesicle membrane // traceable author statement /// 0061202 // clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane // traceable author statement /// 0070083 // clathrin-sculpted monoamine transport vesicle membrane // traceable author statement 0000149 // SNARE binding // inferred from electronic annotation /// 0001786 // phosphatidylserine binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // traceable author statement /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005545 // 1-phosphatidylinositol binding // traceable author statement /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0017075 // syntaxin-1 binding // traceable author statement /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay 117.90 137.72 12.16 0.00 0.00 -4.42
212300_at 212300_at AL049795 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049795 /DEF=Human DNA sequence from clone RP4-622L5 on chromosome 1p34.2-36.11. Contains the gene for importin alpha 7 (karyopherin), up to six novel genes and the 5 end of the EIF3S2 gene for eukaryotic translation initiation factor 3 beta. Contains ESTs, S... /FEA=mRNA_7 /DB_XREF=gi:6010175 /UG=Hs.83004 interleukin 14 AL049795 taxilin alpha TXLNA 200081 NM_175852 /// XM_005270594 /// XM_006710424 0006887 // exocytosis // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0042113 // B cell activation // inferred from electronic annotation 0005576 // extracellular region // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005125 // cytokine activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0030372 // high molecular weight B cell growth factor receptor binding // non-traceable author statement 149.80 106.47 12.07 0.00 0.00 -4.42
211075_s_at 211075_s_at Z25521 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:Z25521.1 /DEF=H.sapiens integrin associated protein mRNA, complete CDS,. /FEA=mRNA /PROD=integrin associated protein /DB_XREF=gi:396704 /FL=gb:Z25521.1 Z25521 CD47 molecule CD47 961 NM_001025079 /// NM_001025080 /// NM_001777 /// NM_198793 /// XM_005247908 /// XM_005247909 /// XR_241521 /// XR_241522 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008228 // opsonization // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009617 // response to bacterium // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0070053 // thrombospondin receptor activity // inferred from physical interaction -288.70 387.50 -12.05 0.00 0.00 -4.42
209102_s_at 209102_s_at AF019214 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF019214.1 /DEF=Homo sapiens HMG box containing protein 1 mRNA, complete cds. /FEA=mRNA /PROD=HMG box containing protein 1 /DB_XREF=gi:2460168 /UG=Hs.10882 HMG-box containing protein 1 /FL=gb:AF019214.1 AF019214 HMG-box transcription factor 1 HBP1 26959 NM_001244262 /// NM_012257 /// XM_005250266 /// XM_005250267 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007050 // cell cycle arrest // non-traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0043268 // positive regulation of potassium ion transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -164.23 235.24 -12.03 0.00 0.00 -4.42
217106_x_at 217106_x_at AF091078 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF091078.1 /DEF=Homo sapiens clone 559 unknown mRNA, complete sequence. /FEA=mRNA /PROD=unknown /DB_XREF=gi:3859993 /UG=Hs.125819 putative dimethyladenosine transferase AF091078 DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae) DIMT1 27292 NM_014473 0000154 // rRNA modification // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016433 // rRNA (adenine) methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0052909 // 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity // inferred from electronic annotation 112.78 243.26 11.99 0.00 0.00 -4.42
205846_at 205846_at NM_002837 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002837.1 /DEF=Homo sapiens protein tyrosine phosphatase, receptor type, B (PTPRB), mRNA. /FEA=mRNA /GEN=PTPRB /PROD=protein tyrosine phosphatase, receptor type, B /DB_XREF=gi:4506304 /UG=Hs.123641 protein tyrosine phosphatase, receptor type, B /FL=gb:NM_002837.1 NM_002837 protein tyrosine phosphatase, receptor type, B PTPRB 5787 NM_001109754 /// NM_001206971 /// NM_001206972 /// NM_002837 /// XM_006719528 /// XM_006719529 /// XM_006719530 /// XR_245948 /// XR_245949 0001525 // angiogenesis // inferred from electronic annotation /// 0006470 // protein dephosphorylation // traceable author statement /// 0006796 // phosphate-containing compound metabolic process // traceable author statement /// 0016311 // dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation -282.25 300.40 -11.95 0.00 0.00 -4.42
214948_s_at 214948_s_at AL050136 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050136.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586L141 (from clone DKFZp586L141). /FEA=mRNA /DB_XREF=gi:4884346 /UG=Hs.140945 Homo sapiens mRNA; cDNA DKFZp586L141 (from clone DKFZp586L141) AL050136 TATA element modulatory factor 1 TMF1 7110 NM_007114 0001675 // acrosome assembly // inferred from electronic annotation /// 0001819 // positive regulation of cytokine production // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007286 // spermatid development // inferred from electronic annotation /// 0007289 // spermatid nucleus differentiation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0032275 // luteinizing hormone secretion // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0061136 // regulation of proteasomal protein catabolic process // inferred from sequence or structural similarity /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 2000845 // positive regulation of testosterone secretion // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 131.38 169.64 11.90 0.00 0.00 -4.42
203038_at 203038_at NM_002844 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002844.1 /DEF=Homo sapiens protein tyrosine phosphatase, receptor type, K (PTPRK), mRNA. /FEA=mRNA /GEN=PTPRK /PROD=protein tyrosine phosphatase, receptor type, K /DB_XREF=gi:4506316 /UG=Hs.79005 protein tyrosine phosphatase, receptor type, K /FL=gb:L77886.1 gb:NM_002844.1 NM_002844 protein tyrosine phosphatase, receptor type, K PTPRK 5796 NM_001135648 /// NM_001291981 /// NM_001291982 /// NM_001291983 /// NM_001291984 /// NM_002844 /// XM_005267082 /// XM_005267085 /// XM_005267086 /// XM_006715535 /// XM_006715536 /// XM_006715537 /// XM_006715538 /// XM_006715539 /// XM_006715540 /// XM_006715541 /// XM_006725019 /// XM_006725020 /// XM_006725021 /// XM_006725022 /// XM_006725023 /// XM_006725024 /// XM_006725025 /// XM_006725026 /// XM_006725027 0006470 // protein dephosphorylation // inferred from direct assay /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010839 // negative regulation of keratinocyte proliferation // inferred from direct assay /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0031175 // neuron projection development // inferred from electronic annotation /// 0034394 // protein localization to cell surface // inferred from direct assay /// 0034614 // cellular response to reactive oxygen species // inferred from direct assay /// 0034644 // cellular response to UV // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0048041 // focal adhesion assembly // inferred from mutant phenotype 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031256 // leading edge membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0045295 // gamma-catenin binding // inferred from physical interaction -723.20 840.45 -11.89 0.00 0.00 -4.42
205047_s_at 205047_s_at NM_001673 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001673.1 /DEF=Homo sapiens asparagine synthetase (ASNS), mRNA. /FEA=mRNA /GEN=ASNS /PROD=asparagine synthetase /DB_XREF=gi:4502258 /UG=Hs.75692 asparagine synthetase /FL=gb:M27396.1 gb:NM_001673.1 NM_001673 asparagine synthetase (glutamine-hydrolyzing) ASNS 440 NM_001178075 /// NM_001178076 /// NM_001178077 /// NM_001673 /// NM_133436 /// NM_183356 0001889 // liver development // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006529 // asparagine biosynthetic process // inferred by curator /// 0006529 // asparagine biosynthetic process // inferred from direct assay /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031427 // response to methotrexate // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032354 // response to follicle-stimulating hormone // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043200 // response to amino acid // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045931 // positive regulation of mitotic cell cycle // inferred from direct assay /// 0070981 // L-asparagine biosynthetic process // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // not recorded /// 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation -433.57 258.11 -11.86 0.00 0.00 -4.42
212473_s_at 212473_s_at BE965029 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE965029 /FEA=EST /DB_XREF=gi:11768976 /DB_XREF=est:601658812R1 /CLONE=IMAGE:3886131 /UG=Hs.198793 Homo sapiens cDNA: FLJ22463 fis, clone HRC10126 BE965029 microtubule associated monooxygenase, calponin and LIM domain containing 2 MICAL2 9645 NM_001282663 /// NM_001282664 /// NM_001282665 /// NM_001282666 /// NM_001282667 /// NM_001282668 /// NM_014632 /// XM_005253249 /// XM_005253251 /// XM_006718391 /// XM_006718392 /// XM_006718393 0001947 // heart looping // inferred from sequence or structural similarity /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0010735 // positive regulation of transcription via serum response element binding // inferred from mutant phenotype /// 0019417 // sulfur oxidation // inferred from direct assay /// 0019417 // sulfur oxidation // inferred from sequence or structural similarity /// 0030042 // actin filament depolymerization // inferred from direct assay /// 0030042 // actin filament depolymerization // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen // inferred from sequence or structural similarity /// 0043914 // NADPH:sulfur oxidoreductase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0071949 // FAD binding // inferred from sequence or structural similarity 338.62 707.44 11.84 0.00 0.00 -4.42
203380_x_at 203380_x_at NM_006925 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006925.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 5 (SFRS5), mRNA. /FEA=mRNA /GEN=SFRS5 /PROD=splicing factor, arginineserine-rich 5 /DB_XREF=gi:5902077 /UG=Hs.166975 splicing factor, arginineserine-rich 5 /FL=gb:U30827.1 gb:NM_006925.1 NM_006925 serine/arginine-rich splicing factor 5 SRSF5 6430 NM_001039465 /// NM_006925 /// XM_005267998 /// XM_005267999 /// XM_005268000 /// XM_005268001 /// XR_429326 /// XR_429327 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006376 // mRNA splice site selection // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0009611 // response to wounding // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // inferred from electronic annotation 240.05 174.97 11.83 0.00 0.00 -4.42
206028_s_at 206028_s_at NM_006343 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006343.1 /DEF=Homo sapiens c-mer proto-oncogene tyrosine kinase (MERTK), mRNA. /FEA=mRNA /GEN=MERTK /PROD=c-mer proto-oncogene tyrosine kinase /DB_XREF=gi:5453737 /UG=Hs.306178 c-mer proto-oncogene tyrosine kinase /FL=gb:U08023.1 gb:NM_006343.1 NM_006343 MER proto-oncogene, tyrosine kinase MERTK 10461 NM_006343 /// XM_005263565 /// XM_005263568 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0006909 // phagocytosis // inferred from mutant phenotype /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0030168 // platelet activation // inferred from electronic annotation /// 0032940 // secretion by cell // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0043277 // apoptotic cell clearance // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0051250 // negative regulation of lymphocyte activation // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060068 // vagina development // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016028 // rhabdomere // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 131.62 136.69 11.82 0.00 0.00 -4.42
221877_at 221877_at BF508835 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF508835 /FEA=EST /DB_XREF=gi:11592133 /DB_XREF=est:UI-H-BI4-aor-d-03-0-UI.s1 /CLONE=IMAGE:3085853 /UG=Hs.6217 Homo sapiens cDNA FLJ12521 fis, clone NT2RM2001840 BF508835 immunity-related GTPase family, Q IRGQ 126298 NM_001007561 /// XM_005258515 /// XM_005258516 135.75 82.20 11.74 0.00 0.00 -4.42
222088_s_at 222088_s_at AA778684 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA778684 /FEA=EST /DB_XREF=gi:2838015 /DB_XREF=est:af87g07.s1 /CLONE=1049052 /UG=Hs.7594 solute carrier family 2 (facilitated glucose transporter), member 3 AA778684 solute carrier family 2 (facilitated glucose transporter), member 14 /// solute carrier family 2 (facilitated glucose transporter), member 3 SLC2A14 /// SLC2A3 6515 /// 144195 NM_001286233 /// NM_001286234 /// NM_001286235 /// NM_001286236 /// NM_001286237 /// NM_006931 /// NM_153449 /// XM_005253315 /// XM_005253317 0005975 // carbohydrate metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0015758 // glucose transport // inferred from electronic annotation /// 0019852 // L-ascorbic acid metabolic process // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation -190.38 141.69 -11.73 0.00 0.00 -4.42
217938_s_at 217938_s_at NM_020122 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020122.1 /DEF=Homo sapiens potassium channel modulatory factor (DKFZP434L1021), mRNA. /FEA=mRNA /GEN=DKFZP434L1021 /PROD=potassium channel modulatory factor /DB_XREF=gi:10047127 /UG=Hs.5392 potassium channel modulatory factor /FL=gb:NM_020122.1 gb:BC000178.2 NM_020122 potassium channel modulatory factor 1 KCMF1 56888 NM_020122 /// XM_006712052 0008152 // metabolic process // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -257.33 556.24 -11.69 0.00 0.00 -4.42
200770_s_at 200770_s_at J03202 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J03202.1 /DEF=Human laminin B2 chain mRNA, complete cds. /FEA=mRNA /GEN=LAMB2 /DB_XREF=gi:186916 /UG=Hs.214982 laminin, gamma 1 (formerly LAMB2) /FL=gb:J03202.1 gb:NM_002293.2 J03202 laminin, gamma 1 (formerly LAMB2) LAMC1 3915 NM_002293 0006461 // protein complex assembly // inferred from direct assay /// 0007155 // cell adhesion // inferred from direct assay /// 0007411 // axon guidance // traceable author statement /// 0007492 // endoderm development // traceable author statement /// 0016477 // cell migration // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // inferred from mutant phenotype /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005605 // basal lamina // inferred from electronic annotation /// 0005606 // laminin-1 complex // non-traceable author statement /// 0005606 // laminin-1 complex // traceable author statement /// 0005615 // extracellular space // non-traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0043259 // laminin-10 complex // traceable author statement /// 0043260 // laminin-11 complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0043208 // glycosphingolipid binding // inferred from electronic annotation -185.60 345.38 -11.68 0.00 0.00 -4.42
210405_x_at 210405_x_at AF153687 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF153687.1 /DEF=Homo sapiens Fas-like protein precusor mRNA, complete cds. /FEA=mRNA /PROD=Fas-like protein precusor /DB_XREF=gi:8489094 /UG=Hs.51233 tumor necrosis factor receptor superfamily, member 10b /FL=gb:AF012535.1 gb:AF012628.1 gb:AF018657.1 gb:AF020501.1 gb:AF022386.1 gb:AF016268.1 gb:NM_003842.1 gb:AF192548.1 gb:AF153687.1 AF153687 tumor necrosis factor receptor superfamily, member 10b TNFRSF10B 8795 NM_003842 /// NM_147187 /// NR_027140 /// XM_006716409 0006915 // apoptotic process // non-traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007250 // activation of NF-kappaB-inducing kinase activity // non-traceable author statement /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0097190 // apoptotic signaling pathway // traceable author statement /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred by curator 0004872 // receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0045569 // TRAIL binding // non-traceable author statement -372.42 314.84 -11.65 0.00 0.00 -4.42
205644_s_at 205644_s_at NM_003096 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003096.1 /DEF=Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), mRNA. /FEA=mRNA /GEN=SNRPG /PROD=small nuclear ribonucleoprotein polypeptide G /DB_XREF=gi:4507132 /UG=Hs.77496 small nuclear ribonucleoprotein polypeptide G /FL=gb:BC000070.1 gb:NM_003096.1 NM_003096 small nuclear ribonucleoprotein polypeptide G SNRPG 6637 NM_003096 0000245 // spliceosomal complex assembly // non-traceable author statement /// 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008334 // histone mRNA metabolic process // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005683 // U7 snRNP // inferred from direct assay /// 0005685 // U1 snRNP // inferred from direct assay /// 0005687 // U4 snRNP // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // non-traceable author statement /// 0034709 // methylosome // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 234.43 700.49 11.62 0.00 0.00 -4.42
201652_at 201652_at NM_006837 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006837.1 /DEF=Homo sapiens COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 5 (COPS5), mRNA. /FEA=mRNA /GEN=COPS5 /PROD=COP9 (constitutive photomorphogenic,Arabidopsis, homolog) subunit 5 /DB_XREF=gi:5803045 /UG=Hs.198767 COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 5 /FL=gb:BC001187.1 gb:BC001859.1 gb:U65928.1 gb:U70734.1 gb:NM_006837.1 NM_006837 COP9 signalosome subunit 5 COPS5 10987 NM_006837 0000338 // protein deneddylation // inferred from mutant phenotype /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0010388 // cullin deneddylation // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046328 // regulation of JNK cascade // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 1990182 // exosomal secretion // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005852 // eukaryotic translation initiation factor 3 complex // traceable author statement /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003713 // transcription coactivator activity // traceable author statement /// 0003743 // translation initiation factor activity // traceable author statement /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 150.10 191.88 11.54 0.00 0.00 -4.42
204020_at 204020_at BF739943 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF739943 /FEA=EST /DB_XREF=gi:12066607 /DB_XREF=est:7o41b04.x1 /CLONE=IMAGE:3576534 /UG=Hs.29117 purine-rich element binding protein A /FL=gb:M96684.1 gb:NM_005859.1 BF739943 purine-rich element binding protein A PURA 5813 NM_005859 0006268 // DNA unwinding involved in DNA replication // inferred from direct assay /// 0006270 // DNA replication initiation // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation 0000784 // nuclear chromosome, telomeric region // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005662 // DNA replication factor A complex // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0000900 // translation repressor activity, nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003691 // double-stranded telomeric DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0032422 // purine-rich negative regulatory element binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation 105.85 115.67 11.52 0.00 0.00 -4.42
218095_s_at 218095_s_at NM_018475 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018475.1 /DEF=Homo sapiens uncharacterized hypothalamus protein HTMP (LOC55858), mRNA. /FEA=mRNA /GEN=LOC55858 /PROD=uncharacterized hypothalamus protein HTMP /DB_XREF=gi:8923860 /UG=Hs.236510 uncharacterized hypothalamus protein HTMP /FL=gb:BC003545.1 gb:AF220188.1 gb:NM_018475.1 gb:AF183409.1 NM_018475 transmembrane protein 165 TMEM165 55858 NM_018475 /// NR_073070 /// XR_427522 0006487 // protein N-linked glycosylation // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // inferred from genetic interaction /// 0032472 // Golgi calcium ion transport // inferred from direct assay /// 0035751 // regulation of lysosomal lumen pH // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0010008 // endosome membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 166.95 189.95 11.52 0.00 0.00 -4.42
212888_at 212888_at BG109746 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG109746 /FEA=EST /DB_XREF=gi:12603252 /DB_XREF=est:602280883F1 /CLONE=IMAGE:4368381 /UG=Hs.325625 Homo sapiens clone 23938 mRNA sequence BG109746 dicer 1, ribonuclease type III DICER1 23405 NM_001195573 /// NM_001271282 /// NM_001291628 /// NM_030621 /// NM_177438 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010070 // zygote asymmetric cell division // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010626 // negative regulation of Schwann cell proliferation // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0014040 // positive regulation of Schwann cell differentiation // inferred from sequence or structural similarity /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021675 // nerve development // inferred from sequence or structural similarity /// 0021889 // olfactory bulb interneuron differentiation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030422 // production of siRNA involved in RNA interference // inferred from direct assay /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from mutant phenotype /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031054 // pre-miRNA processing // inferred from direct assay /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0031643 // positive regulation of myelination // inferred from sequence or structural similarity /// 0032290 // peripheral nervous system myelin formation // inferred from sequence or structural similarity /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from sequence or structural similarity /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042487 // regulation of odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045069 // regulation of viral genome replication // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048536 // spleen development // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048713 // regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0055013 // cardiac muscle cell development // inferred from electronic annotation /// 0060119 // inner ear receptor cell development // inferred from electronic annotation /// 0060576 // intestinal epithelial cell development // inferred from electronic annotation /// 0070173 // regulation of enamel mineralization // inferred from electronic annotation /// 0071335 // hair follicle cell proliferation // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 2000630 // positive regulation of miRNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016442 // RISC complex // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004525 // ribonuclease III activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0035198 // miRNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 132.28 90.29 11.52 0.00 0.00 -4.42
202071_at 202071_at NM_002999 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002999.1 /DEF=Homo sapiens syndecan 4 (amphiglycan, ryudocan) (SDC4), mRNA. /FEA=mRNA /GEN=SDC4 /PROD=syndecan 4 (amphiglycan, ryudocan) /DB_XREF=gi:4506860 /UG=Hs.252189 syndecan 4 (amphiglycan, ryudocan) /FL=gb:NM_002999.1 NM_002999 syndecan 4 SDC4 6385 NM_002999 0001523 // retinoid metabolic process // traceable author statement /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043034 // costamere // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001968 // fibronectin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0070053 // thrombospondin receptor activity // inferred from mutant phenotype -557.22 452.09 -11.51 0.00 0.00 -4.42
217858_s_at 217858_s_at NM_016607 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016607.1 /DEF=Homo sapiens ALEX3 protein (ALEX3), mRNA. /FEA=mRNA /GEN=ALEX3 /PROD=ALEX3 protein /DB_XREF=gi:7705273 /UG=Hs.172788 ALEX3 protein /FL=gb:AB039669.1 gb:NM_016607.1 NM_016607 armadillo repeat containing, X-linked 3 ARMCX3 51566 NM_016607 /// NM_177947 /// NM_177948 /// XM_005262141 0034613 // cellular protein localization // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031307 // integral component of mitochondrial outer membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 119.70 165.45 11.51 0.00 0.00 -4.42
221534_at 221534_at AF073483 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF073483.1 /DEF=Homo sapiens p5326 mRNA, complete cds. /FEA=mRNA /PROD=p5326 /DB_XREF=gi:12002057 /UG=Hs.93678 Homo sapiens, clone IMAGE:3640823, mRNA, partial cds /FL=gb:AF073483.1 AF073483 chromosome 11 open reading frame 68 C11orf68 83638 NM_001135635 /// NM_031450 0044822 // poly(A) RNA binding // inferred from direct assay 126.00 93.45 11.50 0.00 0.00 -4.42
201987_at 201987_at AI984051 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI984051 /FEA=EST /DB_XREF=gi:5811270 /DB_XREF=est:wt52h03.x1 /CLONE=IMAGE:2511125 /UG=Hs.11861 thyroid hormone receptor-associated protein, 240 kDa subunit /FL=gb:AF117754.1 gb:NM_005121.1 AI984051 mediator complex subunit 13 MED13 9969 NM_005121 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030518 // intracellular steroid hormone receptor signaling pathway // inferred from direct assay /// 0030521 // androgen receptor signaling pathway // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016592 // mediator complex // inferred from direct assay 0001104 // RNA polymerase II transcription cofactor activity // inferred from direct assay /// 0003712 // transcription cofactor activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004872 // receptor activity // inferred from direct assay /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // non-traceable author statement /// 0042809 // vitamin D receptor binding // non-traceable author statement /// 0046966 // thyroid hormone receptor binding // inferred from direct assay 145.65 165.65 11.47 0.00 0.00 -4.42
204285_s_at 204285_s_at AI857639 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI857639 /FEA=EST /DB_XREF=gi:5511255 /DB_XREF=est:wk95g09.x1 /CLONE=IMAGE:2423200 /UG=Hs.96 phorbol-12-myristate-13-acetate-induced protein 1 /FL=gb:NM_021127.1 AI857639 phorbol-12-myristate-13-acetate-induced protein 1 PMAIP1 5366 NM_021127 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0009411 // response to UV // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010498 // proteasomal protein catabolic process // inferred from direct assay /// 0010907 // positive regulation of glucose metabolic process // inferred from direct assay /// 0010917 // negative regulation of mitochondrial membrane potential // inferred from sequence or structural similarity /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0042149 // cellular response to glucose starvation // inferred from mutant phenotype /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from electronic annotation /// 0043029 // T cell homeostasis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043331 // response to dsRNA // inferred from direct assay /// 0043517 // positive regulation of DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from direct assay /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype /// 0072593 // reactive oxygen species metabolic process // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from direct assay /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction -644.50 410.32 -11.47 0.00 0.00 -4.42
200815_s_at 200815_s_at L13386 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L13386.1 /DEF=Homo sapiens (clone 47) Miller-Dieker lissencephaly protein (LIS1) mRNA, complete cds. /FEA=mRNA /GEN=LIS1 /PROD=Miller-Dieker lissencephaly protein /DB_XREF=gi:349825 /UG=Hs.77318 platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) /FL=gb:L13385.1 gb:L13386.1 gb:NM_000430.2 L13386 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) PAFAH1B1 5048 NM_000430 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0000278 // mitotic cell cycle // traceable author statement /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001675 // acrosome assembly // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0008090 // retrograde axon cargo transport // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from mutant phenotype /// 0009306 // protein secretion // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0017145 // stem cell division // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // inferred from sequence or structural similarity /// 0021540 // corpus callosum morphogenesis // inferred from mutant phenotype /// 0021766 // hippocampus development // inferred from sequence or structural similarity /// 0021819 // layer formation in cerebral cortex // inferred from sequence or structural similarity /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from mutant phenotype /// 0032319 // regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0036035 // osteoclast development // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046469 // platelet activating factor metabolic process // inferred from sequence or structural similarity /// 0047496 // vesicle transport along microtubule // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from mutant phenotype /// 0050885 // neuromuscular process controlling balance // inferred from mutant phenotype /// 0051081 // nuclear envelope disassembly // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051660 // establishment of centrosome localization // inferred from electronic annotation 0000235 // astral microtubule // inferred from direct assay /// 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0031512 // motile primary cilium // inferred from sequence or structural similarity /// 0031513 // nonmotile primary cilium // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0034452 // dynactin binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043274 // phospholipase binding // inferred from sequence or structural similarity /// 0045502 // dynein binding // inferred from direct assay /// 0045505 // dynein intermediate chain binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from sequence or structural similarity -284.03 322.56 -11.42 0.00 0.00 -4.42
203810_at 203810_at BG252490 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG252490 /FEA=EST /DB_XREF=gi:12762406 /DB_XREF=est:602366225F1 /CLONE=IMAGE:4474279 /UG=Hs.41693 DnaJ (Hsp40) homolog, subfamily B, member 4 /FL=gb:U40992.2 gb:NM_007034.2 BG252490 DnaJ (Hsp40) homolog, subfamily B, member 4 DNAJB4 11080 NM_007034 /// XM_005270397 /// XM_006710308 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0009408 // response to heat // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from physical interaction 231.67 234.61 11.38 0.00 0.00 -4.42
221741_s_at 221741_s_at AL096828 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL096828 /DEF=Human DNA sequence from clone RP5-963E22 on chromosome 20 Contains the 3 end of a novel gene similar to NY-REN-2 Antigen, 5 CpG islands, ESTs, STSs and GSSs /FEA=mRNA_2 /DB_XREF=gi:9663381 /UG=Hs.11747 hypothetical protein FLJ20391 AL096828 YTH domain family, member 1 YTHDF1 54915 NM_017798 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 1990247 // N6-methyladenosine-containing RNA binding // inferred from direct assay 151.95 331.40 11.38 0.00 0.00 -4.42
210357_s_at 210357_s_at BC000669 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000669.1 /DEF=Homo sapiens, Similar to hypothetical protein, clone MGC:1010, mRNA, complete cds. /FEA=mRNA /PROD=Similar to hypothetical protein /DB_XREF=gi:12653766 /UG=Hs.92374 hypothetical protein /FL=gb:BC000669.1 BC000669 spermine oxidase SMOX 54498 NM_001270691 /// NM_175839 /// NM_175840 /// NM_175841 /// NM_175842 /// XM_006723578 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // traceable author statement /// 0006598 // polyamine catabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046208 // spermine catabolic process // inferred from direct assay /// 0046208 // spermine catabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046592 // polyamine oxidase activity // inferred from direct assay /// 0052894 // norspermine:oxygen oxidoreductase activity // inferred from electronic annotation /// 0052895 // N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity // inferred from electronic annotation /// 0052901 // spermine:oxygen oxidoreductase (spermidine-forming) activity // inferred from electronic annotation -133.18 115.76 -11.34 0.00 0.00 -4.42
213107_at 213107_at R59093 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:R59093 /FEA=EST /DB_XREF=gi:829788 /DB_XREF=est:yh03e12.s1 /CLONE=IMAGE:41943 /UG=Hs.170204 KIAA0551 protein /FL=gb:AF172264.1 R59093 TRAF2 and NCK interacting kinase TNIK 23043 NM_001161560 /// NM_001161561 /// NM_001161562 /// NM_001161563 /// NM_001161564 /// NM_001161565 /// NM_001161566 /// NM_015028 /// NR_027767 /// XM_006713555 0006468 // protein phosphorylation // inferred from direct assay /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007256 // activation of JNKK activity // inferred from direct assay /// 0007256 // activation of JNKK activity // inferred from mutant phenotype /// 0007399 // nervous system development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0055037 // recycling endosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 113.42 162.71 11.34 0.00 0.00 -4.42
220892_s_at 220892_s_at NM_021154 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021154.1 /DEF=Homo sapiens phosphoserine aminotransferase (PSA), mRNA. /FEA=mRNA /GEN=PSA /PROD=phosphoserine aminotransferase /DB_XREF=gi:10863954 /UG=Hs.286049 phosphoserine aminotransferase /FL=gb:NM_021154.1 gb:AF113132.1 NM_021154 phosphoserine aminotransferase 1 PSAT1 29968 NM_021154 /// NM_058179 0006564 // L-serine biosynthetic process // non-traceable author statement /// 0006564 // L-serine biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008615 // pyridoxine biosynthetic process // non-traceable author statement /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004648 // O-phospho-L-serine:2-oxoglutarate aminotransferase activity // non-traceable author statement /// 0004648 // O-phospho-L-serine:2-oxoglutarate aminotransferase activity // traceable author statement /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation -508.15 353.80 -11.33 0.00 0.00 -4.42
201631_s_at 201631_s_at NM_003897 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003897.1 /DEF=Homo sapiens immediate early response 3 (IER3), mRNA. /FEA=mRNA /GEN=IER3 /PROD=immediate early response 3 /DB_XREF=gi:4503328 /UG=Hs.76095 immediate early response 3 /FL=gb:BC000844.1 gb:BC005080.1 gb:AF083421.1 gb:NM_003897.1 NM_003897 immediate early response 3 IER3 8870 NM_003897 /// NM_052815 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0001562 // response to protozoan // inferred from electronic annotation /// 0003085 // negative regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0006282 // regulation of DNA repair // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007095 // mitotic G2 DNA damage checkpoint // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045820 // negative regulation of glycolytic process // inferred from electronic annotation /// 0046822 // regulation of nucleocytoplasmic transport // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 1901029 // negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway // inferred from electronic annotation /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from electronic annotation /// 2001020 // regulation of response to DNA damage stimulus // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -759.92 1182.51 -11.27 0.00 0.00 -4.42
221727_at 221727_at AA456973 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA456973 /FEA=EST /DB_XREF=gi:2179693 /DB_XREF=est:aa90g11.s1 /CLONE=IMAGE:838628 /UG=Hs.74861 activated RNA polymerase II transcription cofactor 4 AA456973 SUB1 homolog (S. cerevisiae) SUB1 10923 NM_006713 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 104.28 103.96 11.26 0.00 0.00 -4.42
201632_at 201632_at NM_001414 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001414.1 /DEF=Homo sapiens eukaryotic translation initiation factor 2B, subunit 1 (alpha, 26kD) (EIF2B1), mRNA. /FEA=mRNA /GEN=EIF2B1 /PROD=eukaryotic translation initiation factor 2B,subunit 1 (alpha, 26kD) /DB_XREF=gi:4503502 /UG=Hs.78592 eukaryotic translation initiation factor 2B, subunit 1 (alpha, 26kD) /FL=gb:NM_001414.1 NM_001414 eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa EIF2B1 1967 NM_001414 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // not recorded /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009408 // response to heat // traceable author statement /// 0009749 // response to glucose // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0014003 // oligodendrocyte development // inferred from mutant phenotype /// 0019509 // L-methionine salvage from methylthioadenosine // not recorded /// 0032057 // negative regulation of translational initiation in response to stress // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043434 // response to peptide hormone // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051716 // cellular response to stimulus // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0003743 // translation initiation factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0046523 // S-methyl-5-thioribose-1-phosphate isomerase activity // not recorded 122.93 142.19 11.25 0.00 0.00 -4.42
200969_at 200969_at BG107676 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG107676 /FEA=EST /DB_XREF=gi:12601522 /DB_XREF=est:602277844F1 /CLONE=IMAGE:4365370 /UG=Hs.76698 stress-associated endoplasmic reticulum protein 1; ribosome associated membrane protein 4 /FL=gb:AL136807.1 gb:AF136975.1 gb:AB022427.1 gb:NM_014445.1 BG107676 uncharacterized LOC101928061 /// stress-associated endoplasmic reticulum protein 1 LOC101928061 /// SERP1 27230 /// 101928061 NM_014445 /// XR_241595 /// XR_249518 /// XR_251476 0001501 // skeletal system development // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007009 // plasma membrane organization // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 92.50 206.32 11.20 0.00 0.00 -4.42
201132_at 201132_at NM_019597 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019597.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein H2 (H) (HNRPH2), mRNA. /FEA=mRNA /GEN=HNRPH2 /PROD=heterogeneous nuclear ribonucleoprotein H2 (H) /DB_XREF=gi:9624997 /UG=Hs.278857 heterogeneous nuclear ribonucleoprotein H2 (H) /FL=gb:NM_019597.1 NM_019597 heterogeneous nuclear ribonucleoprotein H2 (H') /// RPL36A-HNRNPH2 readthrough HNRNPH2 /// RPL36A-HNRNPH2 3188 /// 100529097 NM_001032393 /// NM_001199973 /// NM_001199974 /// NM_019597 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 114.00 175.03 11.19 0.00 0.00 -4.42
211985_s_at 211985_s_at AI653730 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI653730 /FEA=EST /DB_XREF=gi:4737709 /DB_XREF=est:wb36f12.x1 /CLONE=IMAGE:2307791 /UG=Hs.279009 matrix Gla protein AI653730 calmodulin 1 (phosphorylase kinase, delta) /// calmodulin 2 (phosphorylase kinase, delta) /// calmodulin 3 (phosphorylase kinase, delta) CALM1 /// CALM2 /// CALM3 801 /// 805 /// 808 NM_001166106 /// NM_001743 /// NM_005184 /// NM_006888 /// XM_006720258 0001975 // response to amphetamine // inferred from electronic annotation /// 0002027 // regulation of heart rate // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0005513 // detection of calcium ion // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030801 // positive regulation of cyclic nucleotide metabolic process // inferred from direct assay /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from electronic annotation /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred by curator 0000922 // spindle pole // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0030017 // sarcomere // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0031432 // titin binding // inferred from physical interaction /// 0031800 // type 3 metabotropic glutamate receptor binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0031997 // N-terminal myristoylation domain binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0072542 // protein phosphatase activator activity // inferred from direct assay 247.08 531.66 11.18 0.00 0.00 -4.42
205264_at 205264_at NM_012099 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012099.1 /DEF=Homo sapiens CD3-epsilon-associated protein; antisense to ERCC-1 (ASE-1), mRNA. /FEA=mRNA /GEN=ASE-1 /PROD=CD3-epsilon-associated protein; antisense toERCC-1 /DB_XREF=gi:6912245 /UG=Hs.211956 CD3-epsilon-associated protein; antisense to ERCC-1 /FL=gb:U86751.1 gb:AF017633.1 gb:NM_012099.1 NM_012099 CD3e molecule, epsilon associated protein CD3EAP 10849 NM_012099 /// XM_005258425 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0009303 // rRNA transcription // inferred from electronic annotation 0000120 // RNA polymerase I transcription factor complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005736 // DNA-directed RNA polymerase I complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 115.65 120.35 11.12 0.00 0.00 -4.42
217168_s_at 217168_s_at AF217990 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF217990.1 /DEF=Homo sapiens clone PP1722 unknown mRNA. /FEA=mRNA /PROD=unknown /DB_XREF=gi:10441910 /UG=Hs.146393 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 AF217990 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 HERPUD1 9709 NM_001010989 /// NM_001010990 /// NM_001272103 /// NM_014685 /// XM_006721352 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from expression pattern /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031396 // regulation of protein ubiquitination // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -588.73 700.11 -11.11 0.00 0.00 -4.42
221751_at 221751_at AL565516 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL565516 /FEA=EST /DB_XREF=gi:12916970 /DB_XREF=est:AL565516 /CLONE=CS0DF004YF08 (3 prime) /UG=Hs.6986 Human glucose transporter pseudogene AL565516 pantothenate kinase 3 PANK3 79646 NM_024594 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 205.00 193.95 11.11 0.00 0.00 -4.42
214683_s_at 214683_s_at AI251890 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI251890 /FEA=EST /DB_XREF=gi:3848419 /DB_XREF=est:qu78d12.x1 /CLONE=IMAGE:1978199 /UG=Hs.2083 CDC-like kinase1 AI251890 CDC-like kinase 1 CLK1 1195 NM_001024646 /// NM_001162407 /// NM_004071 /// NR_027855 /// NR_027856 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -114.62 105.21 -11.02 0.00 0.00 -4.42
213009_s_at 213009_s_at AK022701 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK022701.1 /DEF=Homo sapiens cDNA FLJ12639 fis, clone NT2RM4001938, highly similar to Homo sapiens mRNA for KIAA0898 protein. /FEA=mRNA /DB_XREF=gi:10434250 /UG=Hs.8164 Mulibrey nanism AK022701 tripartite motif containing 37 TRIM37 4591 NM_001005207 /// NM_015294 /// XM_005257385 /// XM_005257386 /// XM_005257387 /// XM_005257388 /// XM_005257389 /// XM_005257390 0016567 // protein ubiquitination // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0046600 // negative regulation of centriole replication // inferred from mutant phenotype /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0070842 // aggresome assembly // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016235 // aggresome // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005164 // tumor necrosis factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -246.35 397.70 -11.02 0.00 0.00 -4.42
200803_s_at 200803_s_at AF033095 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF033095.1 /DEF=Homo sapiens testis enhanced gene transcript protein (TEGT) mRNA, complete cds. /FEA=mRNA /GEN=TEGT /PROD=testis enhanced gene transcript protein /DB_XREF=gi:2645728 /UG=Hs.74637 testis enhanced gene transcript (BAX inhibitor 1) /FL=gb:BC000916.1 gb:AF033095.1 gb:NM_003217.1 AF033095 transmembrane BAX inhibitor motif containing 6 TMBIM6 7009 NM_001098576 /// NM_003217 /// XM_005269126 0006915 // apoptotic process // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -363.07 961.41 -11.00 0.00 0.00 -4.42
212928_at 212928_at AL050331 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050331 /DEF=Human DNA sequence from clone 486I3 on chromosome 6q22.1-22.3. Contains the part of a gene for a novel protein, the gene for KIAA0721 (NAP (Nucleosome Assembly Protein) domain containg protein), the TSPYL gene for TSPY-like (testis specific protei... /FEA=mRNA_1 /DB_XREF=gi:5668655 /UG=Hs.284141 KIAA0721 protein /FL=gb:NM_021648.1 AL050331 TSPY-like 4 TSPYL4 23270 NM_021648 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 195.30 169.75 10.99 0.00 0.00 -4.42
214447_at 214447_at NM_005238 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005238.1 /DEF=Homo sapiens v-ets avian erythroblastosis virus E26 oncogene homolog 1 (ETS1), mRNA. /FEA=CDS /GEN=ETS1 /PROD=v-ets avian erythroblastosis virus E26 oncogenehomolog 1 /DB_XREF=gi:4885218 /UG=Hs.248109 v-ets avian erythroblastosis virus E26 oncogene homolog 1 /FL=gb:J04101.1 gb:NM_005238.1 NM_005238 v-ets avian erythroblastosis virus E26 oncogene homolog 1 ETS1 2113 NM_001143820 /// NM_001162422 /// NM_005238 /// XM_005271428 0001666 // response to hypoxia // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006955 // immune response // traceable author statement /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009611 // response to wounding // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0010715 // regulation of extracellular matrix disassembly // inferred from electronic annotation /// 0021854 // hypothalamus development // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030262 // apoptotic nuclear changes // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030578 // PML body organization // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0034616 // response to laminar fluid shear stress // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from direct assay /// 0045648 // positive regulation of erythrocyte differentiation // inferred from direct assay /// 0045765 // regulation of angiogenesis // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045786 // negative regulation of cell cycle // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046677 // response to antibiotic // inferred from direct assay /// 0048870 // cell motility // inferred from mutant phenotype /// 0051272 // positive regulation of cellular component movement // inferred from mutant phenotype /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0060206 // estrous cycle phase // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0097194 // execution phase of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0045171 // intercellular bridge // inferred from direct assay 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // non-traceable author statement /// 0035035 // histone acetyltransferase binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -152.85 136.35 -10.98 0.00 0.00 -4.42
204131_s_at 204131_s_at N25732 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N25732 /FEA=EST /DB_XREF=gi:1140080 /DB_XREF=est:yx83c03.s1 /CLONE=IMAGE:268324 /UG=Hs.14845 forkhead box O3A /FL=gb:AF032886.1 gb:NM_001455.1 N25732 forkhead box O3 FOXO3 2309 NM_001455 /// NM_201559 /// XM_005266867 /// XM_005266868 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from electronic annotation /// 0001544 // initiation of primordial ovarian follicle growth // inferred from electronic annotation /// 0001547 // antral ovarian follicle growth // inferred from electronic annotation /// 0001556 // oocyte maturation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007389 // pattern specification process // not recorded /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009790 // embryo development // /// 0009888 // tissue development // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from sequence or structural similarity /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045648 // positive regulation of erythrocyte differentiation // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008301 // DNA binding, bending // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031490 // chromatin DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from direct assay -108.92 91.29 -10.97 0.00 0.00 -4.42
201736_s_at 201736_s_at BF000409 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF000409 /FEA=EST /DB_XREF=gi:10700684 /DB_XREF=est:7h27h07.x1 /CLONE=IMAGE:3317245 /UG=Hs.20141 similar to S. cerevisiae SSM4 /FL=gb:AF009301.1 gb:NM_005885.1 BF000409 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase MARCH6 10299 NM_001270660 /// NM_001270661 /// NM_005885 0016567 // protein ubiquitination // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0031624 // ubiquitin conjugating enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -178.43 333.31 -10.96 0.00 0.00 -4.42
200033_at 200033_at NM_004396 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004396.2 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 5 (RNA helicase, 68kD) (DDX5), mRNA. /FEA=mRNA /GEN=DDX5 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 5 /DB_XREF=gi:13514826 /UG=Hs.76053 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 5 (RNA helicase, 68kD) /FL=gb:NM_004396.2 NM_004396 DEAD (Asp-Glu-Ala-Asp) box helicase 5 /// microRNA 3064 /// microRNA 5047 DDX5 /// MIR3064 /// MIR5047 1655 /// 100616387 /// 100616408 NM_004396 /// NR_039891 /// NR_039969 /// XM_005257111 /// XM_006721738 /// XR_429871 /// XR_429872 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016049 // cell growth // non-traceable author statement /// 0033148 // positive regulation of intracellular estrogen receptor signaling pathway // inferred from direct assay /// 0043517 // positive regulation of DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation /// 0060765 // regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype /// 2001014 // regulation of skeletal muscle cell differentiation // inferred from sequence or structural similarity /// 2001141 // regulation of RNA biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // inferred from mutant phenotype /// 0003724 // RNA helicase activity // non-traceable author statement /// 0004004 // ATP-dependent RNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from direct assay /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from direct assay 547.55 1063.03 10.93 0.00 0.00 -4.42
203583_at 203583_at NM_014044 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014044.1 /DEF=Homo sapiens DKFZP564G0222 protein (DKFZP564G0222), mRNA. /FEA=mRNA /GEN=DKFZP564G0222 /PROD=DKFZP564G0222 protein /DB_XREF=gi:7661609 /UG=Hs.13370 DKFZP564G0222 protein /FL=gb:AF077038.1 gb:AL080115.1 gb:NM_014044.1 NM_014044 unc-50 homolog (C. elegans) UNC50 25972 NM_014044 /// XM_005263913 /// XM_006712403 /// XM_006712404 0006810 // transport // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation 110.80 172.15 10.92 0.00 0.00 -4.42
212977_at 212977_at AI817041 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI817041 /FEA=EST /DB_XREF=gi:5436120 /DB_XREF=est:wj76c06.x1 /CLONE=IMAGE:2408746 /UG=Hs.23016 G protein-coupled receptor AI817041 atypical chemokine receptor 3 ACKR3 57007 NM_001047841 /// NM_020311 /// XM_005246097 /// XM_005246098 /// XM_006712640 0001525 // angiogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031623 // receptor internalization // inferred from mutant phenotype /// 0070098 // chemokine-mediated signaling pathway // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004950 // chemokine receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0015026 // coreceptor activity // inferred from electronic annotation /// 0016494 // C-X-C chemokine receptor activity // inferred from mutant phenotype /// 0019958 // C-X-C chemokine binding // inferred from mutant phenotype -930.20 608.23 -10.89 0.00 0.00 -4.42
212455_at 212455_at N36997 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N36997 /FEA=EST /DB_XREF=gi:1158139 /DB_XREF=est:yy39g07.s1 /CLONE=IMAGE:273660 /UG=Hs.12797 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 16 N36997 YTH domain containing 1 YTHDC1 91746 NM_001031732 /// NM_133370 /// XM_005265706 /// XM_005265707 /// XM_005265708 /// XM_005275637 /// XM_005275638 /// XM_005275639 0006376 // mRNA splice site selection // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -338.80 598.55 -10.87 0.00 0.00 -4.42
200650_s_at 200650_s_at NM_005566 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005566.1 /DEF=Homo sapiens lactate dehydrogenase A (LDHA), mRNA. /FEA=mRNA /GEN=LDHA /PROD=LDHA /DB_XREF=gi:5031856 /UG=Hs.2795 lactate dehydrogenase A /FL=gb:BC001829.1 gb:NM_005566.1 NM_005566 lactate dehydrogenase A LDHA 3939 NM_001135239 /// NM_001165414 /// NM_001165415 /// NM_001165416 /// NM_005566 /// NR_028500 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006090 // pyruvate metabolic process // traceable author statement /// 0006096 // glycolytic process // non-traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004459 // L-lactate dehydrogenase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation -1196.57 2534.89 -10.81 0.00 0.00 -4.42
204748_at 204748_at NM_000963 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000963.1 /DEF=Homo sapiens prostaglandin-endoperoxide synthase 2 (prostaglandin GH synthase and cyclooxygenase) (PTGS2), mRNA. /FEA=mRNA /GEN=PTGS2 /PROD=prostaglandin-endoperoxide synthase 2(prostaglandin GH synthase and cyclooxygenase) /DB_XREF=gi:4506264 /UG=Hs.196384 prostaglandin-endoperoxide synthase 2 (prostaglandin GH synthase and cyclooxygenase) /FL=gb:M90100.1 gb:L15326.1 gb:NM_000963.1 NM_000963 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) PTGS2 5743 NM_000963 0001516 // prostaglandin biosynthetic process // inferred from sequence or structural similarity /// 0001516 // prostaglandin biosynthetic process // non-traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009314 // response to radiation // inferred from electronic annotation /// 0009750 // response to fructose // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010042 // response to manganese ion // inferred from electronic annotation /// 0010226 // response to lithium ion // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from sequence or structural similarity /// 0010942 // positive regulation of cell death // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0019371 // cyclooxygenase pathway // inferred from direct assay /// 0019371 // cyclooxygenase pathway // traceable author statement /// 0019372 // lipoxygenase pathway // traceable author statement /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030728 // ovulation // inferred from electronic annotation /// 0031394 // positive regulation of prostaglandin biosynthetic process // non-traceable author statement /// 0031622 // positive regulation of fever generation // inferred from sequence or structural similarity /// 0031915 // positive regulation of synaptic plasticity // inferred from electronic annotation /// 0032227 // negative regulation of synaptic transmission, dopaminergic // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0034644 // cellular response to UV // inferred from electronic annotation /// 0035633 // maintenance of blood-brain barrier // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042633 // hair cycle // inferred from electronic annotation /// 0042640 // anagen // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045986 // negative regulation of smooth muscle contraction // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // non-traceable author statement /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051926 // negative regulation of calcium ion transport // inferred from electronic annotation /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070542 // response to fatty acid // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071318 // cellular response to ATP // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0071636 // positive regulation of transforming growth factor beta production // inferred from sequence or structural similarity /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // inferred from sequence or structural similarity /// 0090271 // positive regulation of fibroblast growth factor production // inferred from sequence or structural similarity /// 0090336 // positive regulation of brown fat cell differentiation // inferred from sequence or structural similarity /// 0090362 // positive regulation of platelet-derived growth factor production // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0004601 // peroxidase activity // non-traceable author statement /// 0004666 // prostaglandin-endoperoxide synthase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050473 // arachidonate 15-lipoxygenase activity // traceable author statement /// 0051213 // dioxygenase activity // inferred from electronic annotation -987.77 584.24 -10.76 0.00 0.00 -4.42
202658_at 202658_at NM_003846 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003846.1 /DEF=Homo sapiens peroxisomal biogenesis factor 11B (PEX11B), mRNA. /FEA=mRNA /GEN=PEX11B /PROD=peroxisomal biogenesis factor 11B /DB_XREF=gi:4505718 /UG=Hs.83023 peroxisomal biogenesis factor 11B /FL=gb:AF093670.1 gb:AB018080.1 gb:NM_003846.1 NM_003846 peroxisomal biogenesis factor 11 beta PEX11B 8799 NM_001184795 /// NM_003846 /// NR_073491 /// NR_073492 /// NR_073493 0007031 // peroxisome organization // inferred from direct assay /// 0007031 // peroxisome organization // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0016559 // peroxisome fission // inferred from direct assay /// 0044375 // regulation of peroxisome size // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005779 // integral component of peroxisomal membrane // inferred from direct assay /// 0005779 // integral component of peroxisomal membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay 136.65 126.23 10.75 0.00 0.00 -4.42
202369_s_at 202369_s_at NM_012288 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012288.1 /DEF=Homo sapiens TRAM-like protein (KIAA0057), mRNA. /FEA=mRNA /GEN=KIAA0057 /PROD=TRAM-like protein /DB_XREF=gi:6912449 /UG=Hs.153954 TRAM-like protein /FL=gb:D31762.1 gb:NM_012288.1 NM_012288 translocation associated membrane protein 2 TRAM2 9697 NM_012288 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 376.92 428.66 10.72 0.00 0.00 -4.42
212218_s_at 212218_s_at AI954041 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI954041 /FEA=EST /DB_XREF=gi:5746351 /DB_XREF=est:wx78h04.x1 /CLONE=IMAGE:2549815 /UG=Hs.11050 F-box only protein 9 /FL=gb:NM_012347.1 AI954041 fatty acid synthase FASN 2194 NM_004104 0001649 // osteoblast differentiation // inferred from direct assay /// 0006084 // acetyl-CoA metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0015939 // pantothenate metabolic process // traceable author statement /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0031325 // positive regulation of cellular metabolic process // traceable author statement /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042587 // glycogen granule // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004312 // fatty acid synthase activity // traceable author statement /// 0004313 // [acyl-carrier-protein] S-acetyltransferase activity // inferred from electronic annotation /// 0004314 // [acyl-carrier-protein] S-malonyltransferase activity // inferred from electronic annotation /// 0004315 // 3-oxoacyl-[acyl-carrier-protein] synthase activity // inferred from electronic annotation /// 0004316 // 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity // inferred from electronic annotation /// 0004317 // 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity // inferred from electronic annotation /// 0004319 // enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity // inferred from electronic annotation /// 0004320 // oleoyl-[acyl-carrier-protein] hydrolase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016295 // myristoyl-[acyl-carrier-protein] hydrolase activity // inferred from electronic annotation /// 0016296 // palmitoyl-[acyl-carrier-protein] hydrolase activity // inferred from electronic annotation /// 0016297 // acyl-[acyl-carrier-protein] hydrolase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019171 // 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity // inferred from electronic annotation /// 0031177 // phosphopantetheine binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047117 // enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity // inferred from electronic annotation /// 0047451 // 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from electronic annotation 185.77 193.66 10.69 0.00 0.00 -4.42
203665_at 203665_at NM_002133 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002133.1 /DEF=Homo sapiens heme oxygenase (decycling) 1 (HMOX1), mRNA. /FEA=mRNA /GEN=HMOX1 /PROD=heme oxygenase (decyclizing) 1 /DB_XREF=gi:4504436 /UG=Hs.202833 heme oxygenase (decycling) 1 /FL=gb:NM_002133.1 NM_002133 heme oxygenase (decycling) 1 HMOX1 3162 NM_002133 0001525 // angiogenesis // traceable author statement /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // traceable author statement /// 0002246 // wound healing involved in inflammatory response // inferred from mutant phenotype /// 0002686 // negative regulation of leukocyte migration // traceable author statement /// 0006778 // porphyrin-containing compound metabolic process // traceable author statement /// 0006788 // heme oxidation // inferred from direct assay /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007588 // excretion // inferred by curator /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0010656 // negative regulation of muscle cell apoptotic process // inferred from electronic annotation /// 0014806 // smooth muscle hyperplasia // traceable author statement /// 0031670 // cellular response to nutrient // inferred from electronic annotation /// 0032764 // negative regulation of mast cell cytokine production // inferred from electronic annotation /// 0034101 // erythrocyte homeostasis // inferred from mutant phenotype /// 0034383 // low-density lipoprotein particle clearance // traceable author statement /// 0035094 // response to nicotine // inferred from direct assay /// 0035556 // intracellular signal transduction // traceable author statement /// 0042167 // heme catabolic process // inferred from direct assay /// 0042167 // heme catabolic process // traceable author statement /// 0042168 // heme metabolic process // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043305 // negative regulation of mast cell degranulation // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from sequence or structural similarity /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045080 // positive regulation of chemokine biosynthetic process // traceable author statement /// 0045765 // regulation of angiogenesis // traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045909 // positive regulation of vasodilation // inferred by curator /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050896 // response to stimulus // inferred from electronic annotation /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from direct assay /// 0055072 // iron ion homeostasis // inferred from direct assay /// 0055072 // iron ion homeostasis // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071243 // cellular response to arsenic-containing substance // inferred from electronic annotation /// 0071276 // cellular response to cadmium ion // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype 0005615 // extracellular space // traceable author statement /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004392 // heme oxygenase (decyclizing) activity // inferred from direct assay /// 0004392 // heme oxygenase (decyclizing) activity // inferred from mutant phenotype /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from sequence or structural similarity /// 0020037 // heme binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -1604.22 911.29 -10.68 0.00 0.00 -4.42
38340_at 38340_at AB014555 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB014555:Homo sapiens mRNA for KIAA0655 protein, partial cds /cds=(0,3253) /gb=AB014555 /gi=3327123 /ug=Hs.96731 /len=4457 AB014555 huntingtin interacting protein 1 related HIP1R 9026 NM_003959 /// XM_005253627 /// XM_005253628 /// XM_006719683 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from direct assay 141.30 280.23 10.68 0.00 0.00 -4.42
202402_s_at 202402_s_at NM_001751 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001751.1 /DEF=Homo sapiens cysteinyl-tRNA synthetase (CARS), mRNA. /FEA=mRNA /GEN=CARS /PROD=cysteinyl-tRNA synthetase /DB_XREF=gi:10835050 /UG=Hs.159604 cysteinyl-tRNA synthetase /FL=gb:NM_001751.1 gb:BC002880.1 gb:AF288206.1 gb:AF288207.1 NM_001751 cysteinyl-tRNA synthetase CARS 833 NM_001014437 /// NM_001014438 /// NM_001194997 /// NM_001751 /// NM_139273 /// NR_036542 /// XM_006718340 /// XM_006718341 /// XM_006725129 /// XM_006725130 /// XR_428857 /// XR_430701 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement 0000049 // tRNA binding // inferred from direct assay /// 0000049 // tRNA binding // inferred from mutant phenotype /// 0000049 // tRNA binding // non-traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from direct assay /// 0004817 // cysteine-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation -131.90 132.88 -10.65 0.00 0.00 -4.42
218943_s_at 218943_s_at NM_014314 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014314.1 /DEF=Homo sapiens RNA helicase (RIG-I), mRNA. /FEA=mRNA /GEN=RIG-I /PROD=RNA helicase /DB_XREF=gi:7657515 /UG=Hs.145612 RNA helicase /FL=gb:AF038963.1 gb:NM_014314.1 NM_014314 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 DDX58 23586 NM_014314 0002230 // positive regulation of defense response to virus by host // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009597 // detection of virus // inferred from direct assay /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from direct assay /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032727 // positive regulation of interferon-alpha production // inferred from direct assay /// 0032727 // positive regulation of interferon-alpha production // inferred from mutant phenotype /// 0032728 // positive regulation of interferon-beta production // inferred from direct assay /// 0032728 // positive regulation of interferon-beta production // inferred from mutant phenotype /// 0034344 // regulation of type III interferon production // traceable author statement /// 0039528 // cytoplasmic pattern recognition receptor signaling pathway in response to virus // traceable author statement /// 0039529 // RIG-I signaling pathway // inferred from mutant phenotype /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from direct assay /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0045087 // innate immune response // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred by curator /// 0051607 // defense response to virus // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // inferred from mutant phenotype /// 0003725 // double-stranded RNA binding // traceable author statement /// 0003727 // single-stranded RNA binding // inferred from mutant phenotype /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -93.68 79.56 -10.65 0.00 0.00 -4.42
209658_at 209658_at AF164598 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF164598.1 /DEF=Homo sapiens cell division control protein 16 (CDC16) mRNA, complete cds. /FEA=mRNA /GEN=CDC16 /PROD=cell division control protein 16 /DB_XREF=gi:5533374 /UG=Hs.1592 CDC16 (cell division cycle 16, S. cerevisiae, homolog) /FL=gb:AF164598.1 AF164598 cell division cycle 16 CDC16 8881 NM_001078645 /// NM_003903 /// XM_005266204 /// XM_005266206 /// XM_006719992 /// XM_006719993 /// XR_245358 /// XR_245359 /// XR_245360 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007088 // regulation of mitosis // traceable author statement /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 126.03 128.29 10.64 0.00 0.00 -4.42
201263_at 201263_at NM_003191 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003191.1 /DEF=Homo sapiens threonyl-tRNA synthetase (TARS), mRNA. /FEA=mRNA /GEN=TARS /PROD=threonyl-tRNA synthetase /DB_XREF=gi:4507366 /UG=Hs.84131 threonyl-tRNA synthetase /FL=gb:BC000517.1 gb:M63180.1 gb:NM_003191.1 NM_003191 threonyl-tRNA synthetase TARS 6897 NM_001258437 /// NM_001258438 /// NM_152295 /// NR_047676 /// NR_047677 /// NR_047678 0006412 // translation // non-traceable author statement /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006435 // threonyl-tRNA aminoacylation // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004829 // threonine-tRNA ligase activity // non-traceable author statement /// 0004829 // threonine-tRNA ligase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation /// 0042803 // protein homodimerization activity // non-traceable author statement -290.05 434.62 -10.62 0.00 0.00 -4.42
209723_at 209723_at BC002538 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002538.1 /DEF=Homo sapiens, serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 9, clone MGC:2131, mRNA, complete cds. /FEA=mRNA /PROD=serine (or cysteine) proteinase inhibitor, cladeB (ovalbumin), member 9 /DB_XREF=gi:12803428 /UG=Hs.104879 serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 9 /FL=gb:L40378.1 gb:BC002538.1 gb:U71364.1 gb:NM_004155.1 BC002538 serpin peptidase inhibitor, clade B (ovalbumin), member 9 SERPINB9 5272 NM_004155 /// XM_005249184 0002448 // mast cell mediated immunity // inferred from expression pattern /// 0006955 // immune response // inferred from direct assay /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0030162 // regulation of proteolysis // not recorded /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0071391 // cellular response to estrogen stimulus // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from mutant phenotype 247.23 471.34 10.60 0.00 0.00 -4.42
212286_at 212286_at AW572909 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW572909 /FEA=EST /DB_XREF=gi:7237642 /DB_XREF=est:hf17d03.x1 /CLONE=IMAGE:2932133 /UG=Hs.27973 KIAA0874 protein /FL=gb:AF317425.1 AW572909 ankyrin repeat domain 12 ANKRD12 23253 NM_001083625 /// NM_001204056 /// NM_015208 /// XM_005258092 /// XM_005258093 /// XM_005258094 /// XM_005258095 /// XM_005258096 /// XM_006722317 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -163.02 126.19 -10.58 0.00 0.00 -4.42
216268_s_at 216268_s_at U77914 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U77914.1 /DEF=Human soluble protein Jagged mRNA, partial cds. /FEA=mRNA /PROD=soluble protein Jagged /DB_XREF=gi:1684889 /UG=Hs.91143 jagged 1 (Alagille syndrome) U77914 jagged 1 JAG1 182 NM_000214 0001525 // angiogenesis // non-traceable author statement /// 0001709 // cell fate determination // non-traceable author statement /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002456 // T cell mediated immunity // inferred from mutant phenotype /// 0003184 // pulmonary valve morphogenesis // inferred from mutant phenotype /// 0003215 // cardiac right ventricle morphogenesis // inferred from sequence or structural similarity /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // non-traceable author statement /// 0007399 // nervous system development // non-traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0030097 // hemopoiesis // non-traceable author statement /// 0030216 // keratinocyte differentiation // non-traceable author statement /// 0030334 // regulation of cell migration // non-traceable author statement /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0035909 // aorta morphogenesis // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0045445 // myoblast differentiation // non-traceable author statement /// 0045446 // endothelial cell differentiation // non-traceable author statement /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045639 // positive regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from electronic annotation /// 0060411 // cardiac septum morphogenesis // inferred from sequence or structural similarity /// 0061156 // pulmonary artery morphogenesis // inferred from mutant phenotype /// 0061309 // cardiac neural crest cell development involved in outflow tract morphogenesis // inferred from sequence or structural similarity /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0061314 // Notch signaling involved in heart development // inferred from mutant phenotype /// 0061444 // endocardial cushion cell development // inferred from sequence or structural similarity /// 0072017 // distal tubule development // inferred from electronic annotation /// 0072070 // loop of Henle development // inferred from electronic annotation /// 0097150 // neuronal stem cell maintenance // inferred from expression pattern /// 2000737 // negative regulation of stem cell differentiation // inferred from mutant phenotype 0005576 // extracellular region // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation 0005112 // Notch binding // non-traceable author statement /// 0005198 // structural molecule activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // non-traceable author statement -754.02 580.84 -10.56 0.00 0.00 -4.42
201475_x_at 201475_x_at NM_004990 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004990.1 /DEF=Homo sapiens methionine-tRNA synthetase (MARS), mRNA. /FEA=mRNA /GEN=MARS /PROD=methionine-tRNA synthetase /DB_XREF=gi:4826825 /UG=Hs.279946 methionine-tRNA synthetase /FL=gb:BC002384.1 gb:NM_004990.1 gb:D84224.1 NM_004990 methionyl-tRNA synthetase /// microRNA 6758 MARS /// MIR6758 4141 /// 102465454 NM_004990 /// NR_106816 /// XM_006719398 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006431 // methionyl-tRNA aminoacylation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004825 // methionine-tRNA ligase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -516.93 553.74 -10.54 0.00 0.00 -4.42
201866_s_at 201866_s_at NM_000176 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000176.1 /DEF=Homo sapiens nuclear receptor subfamily 3, group C, member 1 (NR3C1), mRNA. /FEA=mRNA /GEN=NR3C1 /PROD=nuclear receptor subfamily 3, group C, member 1 /DB_XREF=gi:4504132 /UG=Hs.75772 nuclear receptor subfamily 3, group C, member 1 /FL=gb:M10901.1 gb:NM_000176.1 NM_000176 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) NR3C1 2908 NM_000176 /// NM_001018074 /// NM_001018075 /// NM_001018076 /// NM_001018077 /// NM_001020825 /// NM_001024094 /// NM_001204258 /// NM_001204259 /// NM_001204260 /// NM_001204261 /// NM_001204262 /// NM_001204263 /// NM_001204264 /// NM_001204265 /// XM_005268419 /// XM_005268420 /// XM_005268421 /// XM_005268422 /// XM_005268423 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0031946 // regulation of glucocorticoid biosynthetic process // inferred from electronic annotation /// 0042921 // glucocorticoid receptor signaling pathway // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0043402 // glucocorticoid mediated signaling pathway // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004883 // glucocorticoid receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -152.07 137.84 -10.52 0.00 0.00 -4.42
200802_at 200802_at NM_006513 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006513.1 /DEF=Homo sapiens seryl-tRNA synthetase (SARS), mRNA. /FEA=mRNA /GEN=SARS /PROD=seryl-tRNA synthetase /DB_XREF=gi:5730028 /UG=Hs.4888 seryl-tRNA synthetase /FL=gb:BC000716.1 gb:NM_006513.1 gb:D49914.1 NM_006513 seryl-tRNA synthetase SARS 6301 NM_006513 /// NR_034072 /// NR_034073 /// XM_006710813 0006412 // translation // traceable author statement /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation /// 0008033 // tRNA processing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0097056 // selenocysteinyl-tRNA(Sec) biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -533.75 745.42 -10.46 0.00 0.00 -4.42
205436_s_at 205436_s_at NM_002105 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002105.1 /DEF=Homo sapiens H2A histone family, member X (H2AFX), mRNA. /FEA=mRNA /GEN=H2AFX /PROD=H2A histone family, member X /DB_XREF=gi:4504252 /UG=Hs.147097 H2A histone family, member X /FL=gb:BC004915.1 gb:NM_002105.1 NM_002105 H2A histone family, member X H2AFX 3014 NM_002105 0000077 // DNA damage checkpoint // inferred from direct assay /// 0000724 // double-strand break repair via homologous recombination // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // non-traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006334 // nucleosome assembly // non-traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0010212 // response to ionizing radiation // non-traceable author statement /// 0045739 // positive regulation of DNA repair // non-traceable author statement 0000781 // chromosome, telomeric region // inferred from direct assay /// 0000785 // chromatin // inferred from electronic annotation /// 0000786 // nucleosome // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0001741 // XY body // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005657 // replication fork // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0035861 // site of double-strand break // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042393 // histone binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 321.07 338.71 10.42 0.00 0.00 -4.42
202234_s_at 202234_s_at BF511091 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF511091 /FEA=EST /DB_XREF=gi:11594389 /DB_XREF=est:UI-H-BI4-apn-c-05-0-UI.s1 /CLONE=IMAGE:3087753 /UG=Hs.75231 solute carrier family 16 (monocarboxylic acid transporters), member 1 /FL=gb:NM_003051.1 gb:L31801.1 BF511091 solute carrier family 16 (monocarboxylate transporter), member 1 SLC16A1 6566 NM_001166496 /// NM_003051 0006090 // pyruvate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015718 // monocarboxylic acid transport // traceable author statement /// 0015728 // mevalonate transport // traceable author statement /// 0035873 // lactate transmembrane transport // inferred from electronic annotation /// 0035879 // plasma membrane lactate transport // inferred from sequence or structural similarity /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008028 // monocarboxylic acid transmembrane transporter activity // traceable author statement /// 0015130 // mevalonate transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0097159 // organic cyclic compound binding // inferred from electronic annotation 102.50 144.05 10.42 0.00 0.00 -4.42
207431_s_at 207431_s_at NM_003676 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003676.1 /DEF=Homo sapiens degenerative spermatocyte (homolog Drosophila; lipid desaturase) (DEGS), mRNA. /FEA=mRNA /GEN=DEGS /PROD=degenerative spermatocyte /DB_XREF=gi:4505192 /UG=Hs.185973 degenerative spermatocyte (homolog Drosophila; lipid desaturase) /FL=gb:AF002668.1 gb:NM_003676.1 NM_003676 delta(4)-desaturase, sphingolipid 1 DEGS1 8560 NM_003676 /// NM_144780 /// XM_006711839 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation 179.90 170.15 10.42 0.00 0.00 -4.42
208975_s_at 208975_s_at L38951 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L38951.1 /DEF=Homo sapiens importin beta subunit mRNA, complete cds. /FEA=mRNA /PROD=importin beta subunit /DB_XREF=gi:893287 /UG=Hs.180446 karyopherin (importin) beta 1 /FL=gb:BC003572.1 gb:NM_002265.1 gb:L38951.1 L38951 karyopherin (importin) beta 1 KPNB1 3837 NM_001276453 /// NM_002265 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006610 // ribosomal protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071782 // endoplasmic reticulum tubular network // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 138.50 203.55 10.40 0.00 0.00 -4.42
204614_at 204614_at NM_002575 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002575.1 /DEF=Homo sapiens serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2 (SERPINB2), mRNA. /FEA=mRNA /GEN=SERPINB2 /PROD=serine (or cysteine) proteinase inhibitor, cladeB (ovalbumin), member 2 /DB_XREF=gi:4505594 /UG=Hs.75716 serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2 /FL=gb:J02685.1 gb:J03603.1 gb:M18082.1 gb:NM_002575.1 NM_002575 serpin peptidase inhibitor, clade B (ovalbumin), member 2 SERPINB2 5055 NM_001143818 /// NM_002575 0007596 // blood coagulation // traceable author statement /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0030162 // regulation of proteolysis // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042730 // fibrinolysis // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -347.52 402.96 -10.38 0.00 0.00 -4.42
202719_s_at 202719_s_at BC001451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001451.1 /DEF=Homo sapiens, testin, clone MGC:1146, mRNA, complete cds. /FEA=mRNA /PROD=testin /DB_XREF=gi:12655188 /UG=Hs.165986 testin /FL=gb:AF245356.1 gb:AF245357.1 gb:BC001451.1 gb:NM_015641.1 BC001451 testis derived transcript (3 LIM domains) TES 26136 NM_015641 /// NM_152829 /// XM_005250258 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0008270 // zinc ion binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -173.55 182.82 -10.38 0.00 0.00 -4.42
201279_s_at 201279_s_at BC003064 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003064.1 /DEF=Homo sapiens, disabled (Drosophila) homolog 2 (mitogen-responsive phosphoprotein), clone MGC:1764, mRNA, complete cds. /FEA=mRNA /PROD=disabled (Drosophila) homolog 2(mitogen-responsive phosphoprotein) /DB_XREF=gi:13111753 /UG=Hs.81988 disabled (Drosophila) homolog 2 (mitogen-responsive phosphoprotein) /FL=gb:U39050.1 gb:U53446.1 gb:BC003064.1 gb:NM_001343.1 BC003064 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) /// uncharacterized LOC101926921 DAB2 /// LOC101926921 1601 /// 101926921 NM_001244871 /// NM_001343 /// XR_241759 /// XR_249766 /// XR_251775 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006907 // pinocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007588 // excretion // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0032091 // negative regulation of protein binding // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein import into nucleus // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 2000096 // positive regulation of Wnt signaling pathway, planar cell polarity pathway // inferred from mutant phenotype /// 2000370 // positive regulation of clathrin-mediated endocytosis // inferred from mutant phenotype /// 2000643 // positive regulation of early endosome to late endosome transport // inferred from mutant phenotype /// 2001046 // positive regulation of integrin-mediated signaling pathway // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070022 // transforming growth factor beta receptor homodimeric complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0035612 // AP-2 adaptor complex binding // inferred from electronic annotation /// 0035615 // clathrin adaptor activity // inferred from mutant phenotype /// 0038024 // cargo receptor activity // inferred from mutant phenotype /// 0046332 // SMAD binding // inferred from direct assay 230.80 789.95 10.37 0.00 0.00 -4.42
212226_s_at 212226_s_at AA628586 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA628586 /FEA=EST /DB_XREF=gi:2540973 /DB_XREF=est:af39f12.s1 /CLONE=IMAGE:1034063 /UG=Hs.173717 Homo sapiens phosphatidic acid phosphatase type 2B (PPAP2B), mRNA AA628586 phosphatidic acid phosphatase type 2B PPAP2B 8613 NM_003713 /// NM_177414 0001568 // blood vessel development // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008354 // germ cell migration // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030111 // regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0034109 // homotypic cell-cell adhesion // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0044328 // canonical Wnt signaling pathway involved in positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0044329 // canonical Wnt signaling pathway involved in positive regulation of cell-cell adhesion // inferred from mutant phenotype /// 0044330 // canonical Wnt signaling pathway involved in positive regulation of wound healing // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005912 // adherens junction // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // traceable author statement /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // inferred from electronic annotation -228.28 226.49 -10.37 0.00 0.00 -4.42
200829_x_at 200829_x_at NM_003457 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003457.1 /DEF=Homo sapiens zinc finger protein 207 (ZNF207), mRNA. /FEA=mRNA /GEN=ZNF207 /PROD=zinc finger protein 207 /DB_XREF=gi:4508016 /UG=Hs.62112 zinc finger protein 207 /FL=gb:AF046001.1 gb:NM_003457.1 NM_003457 zinc finger protein 207 ZNF207 7756 NM_001032293 /// NM_001098507 /// NM_003457 /// XM_005258028 /// XM_005258029 /// XM_005258030 0000070 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // inferred from mutant phenotype /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from mutant phenotype /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051983 // regulation of chromosome segregation // inferred from mutant phenotype 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000776 // kinetochore // inferred from mutant phenotype /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0008201 // heparin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 279.98 580.26 10.35 0.00 0.00 -4.42
205379_at 205379_at NM_001236 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001236.2 /DEF=Homo sapiens carbonyl reductase 3 (CBR3), mRNA. /FEA=mRNA /GEN=CBR3 /PROD=carbonyl reductase 3 /DB_XREF=gi:7108334 /UG=Hs.154510 carbonyl reductase 3 /FL=gb:BC002812.1 gb:AB004854.1 gb:NM_001236.2 NM_001236 carbonyl reductase 3 CBR3 874 NM_001236 0008152 // metabolic process // inferred from electronic annotation /// 0042376 // phylloquinone catabolic process // inferred from electronic annotation /// 0050890 // cognition // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0000253 // 3-keto sterol reductase activity // inferred from electronic annotation /// 0004090 // carbonyl reductase (NADPH) activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from direct assay -187.48 145.74 -10.34 0.00 0.00 -4.42
209294_x_at 209294_x_at BC001281 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001281.1 /DEF=Homo sapiens, tumor necrosis factor receptor superfamily, member 10b, clone MGC:5144, mRNA, complete cds. /FEA=mRNA /PROD=tumor necrosis factor receptor superfamily,member 10b /DB_XREF=gi:12654874 /UG=Hs.51233 tumor necrosis factor receptor superfamily, member 10b /FL=gb:BC001281.1 gb:AF018658.1 gb:AF016849.1 gb:AF016266.1 BC001281 tumor necrosis factor receptor superfamily, member 10b TNFRSF10B 8795 NM_003842 /// NM_147187 /// NR_027140 /// XM_006716409 0006915 // apoptotic process // non-traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007250 // activation of NF-kappaB-inducing kinase activity // non-traceable author statement /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0097190 // apoptotic signaling pathway // traceable author statement /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred by curator 0004872 // receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0045569 // TRAIL binding // non-traceable author statement -415.78 386.19 -10.31 0.00 0.00 -4.42
218233_s_at 218233_s_at NM_017601 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017601.1 /DEF=Homo sapiens hypothetical protein DKFZp761H221 (DKFZp761H221), mRNA. /FEA=mRNA /GEN=DKFZp761H221 /PROD=hypothetical protein DKFZp761H221 /DB_XREF=gi:8922168 /UG=Hs.10702 hypothetical protein DKFZp761H221 /FL=gb:NM_017601.1 NM_017601 prickle homolog 4 (Drosophila) /// translocase of outer mitochondrial membrane 6 homolog (yeast) PRICKLE4 /// TOMM6 29964 /// 100188893 NM_001134493 /// NM_013397 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // non-traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 275.20 718.08 10.30 0.00 0.00 -4.42
203794_at 203794_at NM_014826 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014826.1 /DEF=Homo sapiens KIAA0451 gene product (KIAA0451), mRNA. /FEA=mRNA /GEN=KIAA0451 /PROD=KIAA0451 gene product /DB_XREF=gi:7662135 /UG=Hs.18586 KIAA0451 gene product /FL=gb:AB007920.1 gb:NM_014826.1 NM_014826 CDC42 binding protein kinase alpha (DMPK-like) CDC42BPA 8476 NM_003607 /// NM_014826 /// XM_005273317 /// XM_005273318 /// XM_005273320 /// XM_005273321 /// XM_005273322 /// XM_005273323 /// XM_005273324 /// XM_006711834 /// XM_006711835 /// XM_006711836 /// XM_006711837 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007097 // nuclear migration // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0031032 // actomyosin structure organization // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0042641 // actomyosin // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 133.58 177.94 10.29 0.00 0.00 -4.42
201331_s_at 201331_s_at BC004973 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004973.1 /DEF=Homo sapiens, signal transducer and activator of transcription 6, interleukin-4 induced, clone MGC:3649, mRNA, complete cds. /FEA=mRNA /PROD=signal transducer and activator of transcription6, interleukin-4 induced /DB_XREF=gi:13436385 /UG=Hs.181015 signal transducer and activator of transcription 6, interleukin-4 induced /FL=gb:BC004973.1 gb:NM_003153.1 gb:U16031.1 BC004973 signal transducer and activator of transcription 6, interleukin-4 induced STAT6 6778 NM_001178078 /// NM_001178079 /// NM_001178080 /// NM_001178081 /// NM_003153 /// NR_033659 /// XM_006719573 /// XM_006719574 /// XM_006719575 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0002296 // T-helper 1 cell lineage commitment // inferred from electronic annotation /// 0002829 // negative regulation of type 2 immune response // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0035771 // interleukin-4-mediated signaling pathway // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048295 // positive regulation of isotype switching to IgE isotypes // inferred from electronic annotation /// 0060443 // mammary gland morphogenesis // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 1902170 // cellular response to reactive nitrogen species // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0045121 // membrane raft // inferred from electronic annotation 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -99.17 262.11 -10.28 0.00 0.00 -4.42
200699_at 200699_at BE962456 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE962456 /FEA=EST /DB_XREF=gi:11765376 /DB_XREF=est:601655751R1 /CLONE=IMAGE:3846156 /UG=Hs.118778 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 /FL=gb:NM_006854.2 BE962456 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 KDELR2 11014 NM_001100603 /// NM_006854 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005046 // KDEL sequence binding // traceable author statement /// 0046923 // ER retention sequence binding // inferred from electronic annotation 208.77 481.21 10.28 0.00 0.00 -4.42
218618_s_at 218618_s_at NM_022763 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022763.1 /DEF=Homo sapiens hypothetical protein FLJ23399 (FLJ23399), mRNA. /FEA=mRNA /GEN=FLJ23399 /PROD=hypothetical protein FLJ23399 /DB_XREF=gi:12232434 /UG=Hs.299883 hypothetical protein FLJ23399 /FL=gb:NM_022763.1 NM_022763 fibronectin type III domain containing 3B /// uncharacterized LOC101928615 FNDC3B /// LOC101928615 64778 /// 101928615 NM_001135095 /// NM_022763 /// XR_241616 /// XR_249499 /// XR_251497 0045600 // positive regulation of fat cell differentiation // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -695.05 978.00 -10.27 0.00 0.00 -4.42
202181_at 202181_at NM_014734 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014734.1 /DEF=Homo sapiens KIAA0247 gene product (KIAA0247), mRNA. /FEA=mRNA /GEN=KIAA0247 /PROD=KIAA0247 gene product /DB_XREF=gi:7662019 /UG=Hs.82426 KIAA0247 gene product /FL=gb:D87434.1 gb:NM_014734.1 NM_014734 KIAA0247 KIAA0247 9766 NM_014734 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -137.53 178.99 -10.24 0.00 0.00 -4.42
218901_at 218901_at NM_020353 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020353.1 /DEF=Homo sapiens phospholipid scramblase 4 (LOC57088), mRNA. /FEA=mRNA /GEN=LOC57088 /PROD=phospholipid scramblase 4 /DB_XREF=gi:9966818 /UG=Hs.182538 phospholipid scramblase 4 /FL=gb:AF199023.1 gb:NM_020353.1 NM_020353 phospholipid scramblase 4 PLSCR4 57088 NM_001128304 /// NM_001128305 /// NM_001128306 /// NM_001177304 /// NM_020353 /// XM_005247654 /// XM_005247655 0007596 // blood coagulation // non-traceable author statement /// 0017121 // phospholipid scrambling // non-traceable author statement /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017128 // phospholipid scramblase activity // non-traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0042609 // CD4 receptor binding // inferred from physical interaction -130.65 252.70 -10.23 0.00 0.00 -4.42
200845_s_at 200845_s_at NM_004905 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004905.1 /DEF=Homo sapiens anti-oxidant protein 2 (non-selenium glutathione peroxidase, acidic calcium-independent phospholipase A2) (KIAA0106), mRNA. /FEA=mRNA /GEN=KIAA0106 /PROD=anti-oxidant protein 2 (non-selenium glutathioneperoxidase, acidic calcium-independent phospholipase A2) /DB_XREF=gi:4758637 /UG=Hs.120 anti-oxidant protein 2 (non-selenium glutathione peroxidase, acidic calcium-independent phospholipase A2) /FL=gb:D14662.1 gb:NM_004905.1 NM_004905 peroxiredoxin 6 PRDX6 9588 NM_004905 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016209 // antioxidant activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 126.07 610.54 10.22 0.00 0.00 -4.42
213450_s_at 213450_s_at AI659611 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI659611 /FEA=EST /DB_XREF=gi:4763181 /DB_XREF=est:tu06a12.x1 /CLONE=IMAGE:2250238 /UG=Hs.14155 KIAA0653 protein, B7-like protein AI659611 inducible T-cell co-stimulator ligand ICOSLG 23308 NM_001283050 /// NM_001283051 /// NM_001283052 /// NM_015259 /// XM_005261098 0002376 // immune system process // inferred from electronic annotation /// 0006952 // defense response // non-traceable author statement /// 0006972 // hyperosmotic response // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0042104 // positive regulation of activated T cell proliferation // traceable author statement /// 0042110 // T cell activation // non-traceable author statement /// 0042113 // B cell activation // inferred from electronic annotation /// 0045404 // positive regulation of interleukin-4 biosynthetic process // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -146.85 146.78 -10.22 0.00 0.00 -4.42
214436_at 214436_at AF176518 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF176518.1 /DEF=Homo sapiens leucine-rich repeat-containing F-box protein FBL2 mRNA, complete cds. /FEA=mRNA /PROD=F-box protein FBL2 /DB_XREF=gi:6063089 /UG=Hs.6092 f-box and leucine-rich repeat protein 2 /FL=gb:AF186273.1 gb:AF176518.1 gb:AF174589.1 AF176518 F-box and leucine-rich repeat protein 2 FBXL2 25827 NM_001171713 /// NM_012157 /// XM_005265014 /// XM_005265015 /// XM_005265016 /// XM_005265017 /// XR_427262 0006464 // cellular protein modification process // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006513 // protein monoubiquitination // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0016020 // membrane // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation 83.92 60.31 10.21 0.00 0.00 -4.42
208934_s_at 208934_s_at AF342815 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF342815.1 /DEF=Homo sapiens colorectal carcinoma-derived galectin-8 variant I mRNA, complete cds. /FEA=mRNA /PROD=colorectal carcinoma-derived galectin-8 variantI /DB_XREF=gi:13249298 /UG=Hs.4082 lectin, galactoside-binding, soluble, 8 (galectin 8) /FL=gb:AF342815.1 gb:L78132.1 gb:AF074000.1 gb:NM_006499.1 AF342815 lectin, galactoside-binding, soluble, 8 LGALS8 3964 NM_006499 /// NM_201543 /// NM_201544 /// NM_201545 0002317 // plasma cell differentiation // inferred from electronic annotation /// 0031295 // T cell costimulation // inferred from electronic annotation 0005615 // extracellular space // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation -120.62 154.89 -10.20 0.00 0.00 -4.42
204170_s_at 204170_s_at NM_001827 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001827.1 /DEF=Homo sapiens CDC28 protein kinase 2 (CKS2), mRNA. /FEA=mRNA /GEN=CKS2 /PROD=CDC28 protein kinase 2 /DB_XREF=gi:4502858 /UG=Hs.83758 CDC28 protein kinase 2 /FL=gb:NM_001827.1 NM_001827 CDC28 protein kinase regulatory subunit 2 CKS2 1164 NM_001827 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0007049 // cell cycle // non-traceable author statement /// 0007051 // spindle organization // non-traceable author statement /// 0007127 // meiosis I // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0016538 // cyclin-dependent protein serine/threonine kinase regulator activity // inferred from electronic annotation 213.12 365.46 10.18 0.00 0.00 -4.42
212101_at 212101_at AU154321 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU154321 /FEA=EST /DB_XREF=gi:11015842 /DB_XREF=est:AU154321 /CLONE=NT2RP4000774 /UG=Hs.301553 karyopherin alpha 6 (importin alpha 7) /FL=gb:AF060543.1 gb:NM_012316.1 AU154321 karyopherin alpha 6 (importin alpha 7) KPNA6 23633 NM_012316 /// XM_005270711 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 247.48 241.34 10.18 0.00 0.00 -4.42
203625_x_at 203625_x_at BG105365 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG105365 /FEA=EST /DB_XREF=gi:12599141 /DB_XREF=est:602312473F1 /CLONE=IMAGE:4422043 /UG=Hs.23348 S-phase kinase-associated protein 2 (p45) /FL=gb:NM_005983.1 gb:U33761.1 BG105365 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase SKP2 6502 NM_001243120 /// NM_005983 /// NM_032637 /// XM_006714487 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0033148 // positive regulation of intracellular estrogen receptor signaling pathway // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0071460 // cellular response to cell-matrix adhesion // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016235 // aggresome // inferred from direct assay /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 111.38 80.06 10.16 0.00 0.00 -4.42
207442_at 207442_at NM_000759 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000759.1 /DEF=Homo sapiens colony stimulating factor 3 (granulocyte) (CSF3), mRNA. /FEA=mRNA /GEN=CSF3 /PROD=colony stimulating factor 3 (granulocyte) /DB_XREF=gi:4503078 /UG=Hs.2233 colony stimulating factor 3 (granulocyte) /FL=gb:M17706.1 gb:NM_000759.1 NM_000759 colony stimulating factor 3 (granulocyte) CSF3 1440 NM_000759 /// NM_001178147 /// NM_172219 /// NM_172220 /// NR_033662 0006955 // immune response // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // non-traceable author statement /// 0030838 // positive regulation of actin filament polymerization // inferred from direct assay /// 0030851 // granulocyte differentiation // non-traceable author statement /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071345 // cellular response to cytokine stimulus // inferred from direct assay /// 1901215 // negative regulation of neuron death // inferred from electronic annotation /// 2000251 // positive regulation of actin cytoskeleton reorganization // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // non-traceable author statement /// 0005130 // granulocyte colony-stimulating factor receptor binding // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction -218.38 112.91 -10.15 0.00 0.00 -4.42
201197_at 201197_at NM_001634 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001634.3 /DEF=Homo sapiens S-adenosylmethionine decarboxylase 1 (AMD1), mRNA. /FEA=mRNA /GEN=AMD1 /PROD=S-adenosylmethionine decarboxylase 1 precursor /DB_XREF=gi:5209326 /UG=Hs.262476 S-adenosylmethionine decarboxylase 1 /FL=gb:BC000171.2 gb:M21154.1 gb:NM_001634.3 NM_001634 adenosylmethionine decarboxylase 1 AMD1 262 NM_001033059 /// NM_001287214 /// NM_001287215 /// NM_001287216 /// NM_001634 /// NR_109768 0006557 // S-adenosylmethioninamine biosynthetic process // inferred from electronic annotation /// 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0006597 // spermine biosynthetic process // inferred from electronic annotation /// 0008295 // spermidine biosynthetic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0004014 // adenosylmethionine decarboxylase activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 84.78 120.64 10.12 0.00 0.00 -4.42
201462_at 201462_at NM_014766 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014766.1 /DEF=Homo sapiens KIAA0193 gene product (KIAA0193), mRNA. /FEA=mRNA /GEN=KIAA0193 /PROD=KIAA0193 gene product /DB_XREF=gi:7661983 /UG=Hs.75137 KIAA0193 gene product /FL=gb:D83777.1 gb:NM_014766.1 NM_014766 secernin 1 SCRN1 9805 NM_001145513 /// NM_001145514 /// NM_001145515 /// NM_014766 /// XM_005249918 0006508 // proteolysis // inferred from electronic annotation /// 0006887 // exocytosis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0016805 // dipeptidase activity // inferred from electronic annotation 144.30 281.57 10.10 0.00 0.00 -4.42
221903_s_at 221903_s_at BE046443 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE046443 /FEA=EST /DB_XREF=gi:8363496 /DB_XREF=est:hn47d10.x2 /CLONE=IMAGE:3026803 /UG=Hs.18827 KIAA0849 protein BE046443 cylindromatosis (turban tumor syndrome) CYLD 1540 NM_001042355 /// NM_001042412 /// NM_015247 /// XM_005255812 /// XM_006721148 /// XM_006721149 /// XM_006721150 /// XM_006721151 /// XM_006721152 /// XR_429714 0002181 // cytoplasmic translation // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // inferred from mutant phenotype /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042347 // negative regulation of NF-kappaB import into nucleus // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0070266 // necroptotic process // not recorded /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070507 // regulation of microtubule cytoskeleton organization // inferred from mutant phenotype /// 0070536 // protein K63-linked deubiquitination // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001242 // regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0061578 // Lys63-specific deubiquitinase activity // inferred from direct assay /// 0070064 // proline-rich region binding // inferred from physical interaction -122.40 101.28 -10.10 0.00 0.00 -4.42
215495_s_at 215495_s_at AL117523 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL117523.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434H0350 (from clone DKFZp434H0350); partial cds. /FEA=mRNA /GEN=DKFZp434H0350 /PROD=hypothetical protein /DB_XREF=gi:5912039 /UG=Hs.173571 KIAA1053 protein AL117523 sterile alpha motif domain containing 4A SAMD4A 23034 NM_001161576 /// NM_001161577 /// NM_015589 0006417 // regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0030371 // translation repressor activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -165.88 110.49 -10.06 0.00 0.00 -4.42
210511_s_at 210511_s_at M13436 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M13436.1 /DEF=Human ovarian beta-A inhibin mRNA, complete cds. /FEA=mRNA /GEN=INHBA /DB_XREF=gi:186414 /UG=Hs.727 inhibin, beta A (activin A, activin AB alpha polypeptide) /FL=gb:M13436.1 M13436 inhibin, beta A INHBA 3624 NM_002192 0000082 // G1/S transition of mitotic cell cycle // inferred from direct assay /// 0001541 // ovarian follicle development // inferred from genetic interaction /// 0001541 // ovarian follicle development // non-traceable author statement /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from genetic interaction /// 0002244 // hematopoietic progenitor cell differentiation // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006952 // defense response // traceable author statement /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007399 // nervous system development // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008584 // male gonad development // inferred from genetic interaction /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0030154 // cell differentiation // traceable author statement /// 0030218 // erythrocyte differentiation // non-traceable author statement /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0032270 // positive regulation of cellular protein metabolic process // inferred from direct assay /// 0032924 // activin receptor signaling pathway // inferred from direct assay /// 0035987 // endodermal cell differentiation // inferred from direct assay /// 0040007 // growth // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // traceable author statement /// 0042476 // odontogenesis // inferred from genetic interaction /// 0042493 // response to drug // inferred from direct assay /// 0042541 // hemoglobin biosynthetic process // inferred from direct assay /// 0042701 // progesterone secretion // inferred from genetic interaction /// 0045077 // negative regulation of interferon-gamma biosynthetic process // traceable author statement /// 0045578 // negative regulation of B cell differentiation // traceable author statement /// 0045648 // positive regulation of erythrocyte differentiation // inferred from direct assay /// 0045650 // negative regulation of macrophage differentiation // traceable author statement /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046880 // regulation of follicle-stimulating hormone secretion // inferred from genetic interaction /// 0046881 // positive regulation of follicle-stimulating hormone secretion // traceable author statement /// 0046882 // negative regulation of follicle-stimulating hormone secretion // non-traceable author statement /// 0048333 // mesodermal cell differentiation // inferred from electronic annotation /// 0051799 // negative regulation of hair follicle development // inferred from direct assay /// 0060021 // palate development // inferred from genetic interaction /// 0060279 // positive regulation of ovulation // inferred from sequence or structural similarity /// 0061029 // eyelid development in camera-type eye // inferred from sequence or structural similarity /// 0071372 // cellular response to follicle-stimulating hormone stimulus // inferred from electronic annotation /// 0071397 // cellular response to cholesterol // inferred from electronic annotation /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0043509 // activin A complex // inferred from direct assay /// 0043512 // inhibin A complex // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from direct assay /// 0005179 // hormone activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // traceable author statement /// 0017046 // peptide hormone binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0070699 // type II activin receptor binding // inferred from physical interaction -363.58 254.59 -10.04 0.00 0.00 -4.42
202637_s_at 202637_s_at AI608725 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI608725 /FEA=EST /DB_XREF=gi:4617892 /DB_XREF=est:tw90b01.x1 /CLONE=IMAGE:2266921 /UG=Hs.168383 intercellular adhesion molecule 1 (CD54), human rhinovirus receptor /FL=gb:M24283.1 gb:J03132.1 gb:NM_000201.1 AI608725 intercellular adhesion molecule 1 ICAM1 3383 NM_000201 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001910 // regulation of leukocyte mediated cytotoxicity // traceable author statement /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0002291 // T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell // inferred from mutant phenotype /// 0002457 // T cell antigen processing and presentation // inferred from electronic annotation /// 0002693 // positive regulation of cellular extravasation // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from direct assay /// 0007157 // heterophilic cell-cell adhesion // traceable author statement /// 0007159 // leukocyte cell-cell adhesion // inferred from mutant phenotype /// 0007569 // cell aging // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0010477 // response to sulfur dioxide // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0022614 // membrane to membrane docking // inferred from expression pattern /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0034698 // response to gonadotropin // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0044406 // adhesion of symbiont to host // inferred from direct assay /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from electronic annotation /// 0046813 // receptor-mediated virion attachment to host cell // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050776 // regulation of immune response // traceable author statement /// 0050900 // leukocyte migration // inferred from expression pattern /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051926 // negative regulation of calcium ion transport // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0061028 // establishment of endothelial barrier // inferred from genetic interaction /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0071312 // cellular response to alkaloid // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071347 // cellular response to interleukin-1 // inferred from electronic annotation /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay 0001772 // immunological synapse // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005178 // integrin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation -2598.00 1415.55 -10.04 0.00 0.00 -4.42
214096_s_at 214096_s_at AW190316 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW190316 /FEA=EST /DB_XREF=gi:6464796 /DB_XREF=est:xl13g08.x1 /CLONE=IMAGE:2676158 /UG=Hs.2186 eukaryotic translation elongation factor 1 gamma AW190316 serine hydroxymethyltransferase 2 (mitochondrial) SHMT2 6472 NM_001166356 /// NM_001166357 /// NM_001166358 /// NM_001166359 /// NM_005412 /// NR_029415 /// NR_029416 /// NR_029417 /// NR_048562 0006544 // glycine metabolic process // inferred from electronic annotation /// 0006545 // glycine biosynthetic process // inferred from electronic annotation /// 0006563 // L-serine metabolic process // inferred from electronic annotation /// 0006564 // L-serine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0019264 // glycine biosynthetic process from serine // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0035999 // tetrahydrofolate interconversion // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003682 // chromatin binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004372 // glycine hydroxymethyltransferase activity // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008732 // L-allo-threonine aldolase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation -509.35 600.70 -10.03 0.00 0.00 -4.42
205599_at 205599_at NM_005658 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005658.1 /DEF=Homo sapiens TNF receptor-associated factor 1 (TRAF1), mRNA. /FEA=mRNA /GEN=TRAF1 /PROD=TNF receptor-associated factor 1 /DB_XREF=gi:5032192 /UG=Hs.2134 TNF receptor-associated factor 1 /FL=gb:NM_005658.1 gb:U19261.1 NM_005658 TNF receptor-associated factor 1 TRAF1 7185 NM_001190945 /// NM_001190947 /// NM_005658 0006461 // protein complex assembly // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from reviewed computational analysis /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 2001236 // regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0005737 // cytoplasm // traceable author statement 0005164 // tumor necrosis factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031996 // thioesterase binding // inferred from physical interaction -106.18 86.11 -9.98 0.00 0.00 -4.42
200011_s_at 200011_s_at NM_001659 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001659.1 /DEF=Homo sapiens ADP-ribosylation factor 3 (ARF3), mRNA. /FEA=mRNA /GEN=ARF3 /PROD=ADP-ribosylation factor 3 /DB_XREF=gi:4502202 /UG=Hs.119177 ADP-ribosylation factor 3 /FL=gb:M74491.1 gb:NM_001659.1 NM_001659 ADP-ribosylation factor 3 ARF3 377 NM_001659 /// XM_005268856 /// XM_006719391 0006184 // GTP catabolic process // traceable author statement /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation 173.50 325.52 9.98 0.00 0.00 -4.42
219181_at 219181_at NM_006033 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006033.1 /DEF=Homo sapiens lipase, endothelial (LIPG), mRNA. /FEA=mRNA /GEN=LIPG /PROD=endothelial lipase precursor /DB_XREF=gi:5174496 /UG=Hs.65370 lipase, endothelial /FL=gb:AF118767.1 gb:NM_006033.1 NM_006033 lipase, endothelial LIPG 9388 NM_006033 /// XM_005258390 0006629 // lipid metabolic process // traceable author statement /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // non-traceable author statement /// 0010983 // positive regulation of high-density lipoprotein particle clearance // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0032376 // positive regulation of cholesterol transport // inferred from direct assay /// 0034375 // high-density lipoprotein particle remodeling // inferred from mutant phenotype /// 0042632 // cholesterol homeostasis // inferred from mutant phenotype /// 0043691 // reverse cholesterol transport // inferred from mutant phenotype /// 0050746 // regulation of lipoprotein metabolic process // inferred from electronic annotation /// 0055091 // phospholipid homeostasis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004465 // lipoprotein lipase activity // inferred from electronic annotation /// 0004620 // phospholipase activity // inferred from direct assay /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008970 // phosphatidylcholine 1-acylhydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation -475.70 610.35 -9.97 0.00 0.00 -4.42
203917_at 203917_at NM_001338 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001338.1 /DEF=Homo sapiens coxsackie virus and adenovirus receptor (CXADR), mRNA. /FEA=mRNA /GEN=CXADR /PROD=coxsackie virus and adenovirus receptor /DB_XREF=gi:4503172 /UG=Hs.79187 coxsackie virus and adenovirus receptor /FL=gb:BC003684.1 gb:U90716.1 gb:NM_001338.1 NM_001338 coxsackie virus and adenovirus receptor CXADR 1525 NM_001207063 /// NM_001207064 /// NM_001207065 /// NM_001207066 /// NM_001338 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from direct assay /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0008354 // germ cell migration // inferred from sequence or structural similarity /// 0009615 // response to virus // inferred from electronic annotation /// 0010669 // epithelial structure maintenance // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0034109 // homotypic cell-cell adhesion // inferred from direct assay /// 0045216 // cell-cell junction organization // inferred from sequence or structural similarity /// 0046629 // gamma-delta T cell activation // inferred from sequence or structural similarity /// 0048739 // cardiac muscle fiber development // inferred from sequence or structural similarity /// 0050776 // regulation of immune response // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051607 // defense response to virus // inferred from direct assay /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0070633 // transepithelial transport // inferred from mutant phenotype /// 0086067 // AV node cell to bundle of His cell communication // inferred from sequence or structural similarity 0001669 // acrosomal vesicle // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0014704 // intercalated disc // inferred from direct assay /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016327 // apicolateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0030175 // filopodium // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0031594 // neuromuscular junction // inferred from direct assay /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from direct assay /// 0044297 // cell body // inferred from sequence or structural similarity /// 0045121 // membrane raft // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay /// 0050839 // cell adhesion molecule binding // inferred from physical interaction /// 0071253 // connexin binding // inferred from sequence or structural similarity 93.45 89.65 9.95 0.00 0.00 -4.42
200629_at 200629_at NM_004184 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004184.2 /DEF=Homo sapiens tryptophanyl-tRNA synthetase (WARS), mRNA. /FEA=mRNA /GEN=WARS /PROD=tryptophanyl-tRNA synthetase /DB_XREF=gi:7710155 /UG=Hs.82030 tryptophanyl-tRNA synthetase /FL=gb:M77804.1 gb:M61715.1 gb:NM_004184.2 NM_004184 tryptophanyl-tRNA synthetase WARS 7453 NM_004184 /// NM_173701 /// NM_213645 /// NM_213646 /// XM_005268044 /// XM_006720248 /// XM_006720249 0001525 // angiogenesis // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006436 // tryptophanyl-tRNA aminoacylation // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045765 // regulation of angiogenesis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // non-traceable author statement /// 0004830 // tryptophan-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -499.85 747.55 -9.91 0.00 0.00 -4.42
202847_at 202847_at NM_004563 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004563.1 /DEF=Homo sapiens phosphoenolpyruvate carboxykinase 2 (mitochondrial) (PCK2), mRNA. /FEA=mRNA /GEN=PCK2 /PROD=phosphoenolpyruvate carboxykinase 2(mitochondrial) /DB_XREF=gi:4758885 /UG=Hs.75812 phosphoenolpyruvate carboxykinase 2 (mitochondrial) /FL=gb:BC001454.1 gb:NM_004563.1 NM_004563 phosphoenolpyruvate carboxykinase 2 (mitochondrial) PCK2 5106 NM_001018073 /// NM_001291556 /// NM_004563 /// XM_005267726 /// XM_006720157 /// XM_006720158 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006090 // pyruvate metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // traceable author statement /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006116 // NADH oxidation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004611 // phosphoenolpyruvate carboxykinase activity // traceable author statement /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -160.05 137.18 -9.91 0.00 0.00 -4.42
208718_at 208718_at Z97056 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z97056 /DEF=Human DNA sequence from clone RP3-434P1 on chromosome 22 Contains the KCNJ4 gene for inwardly rectifying potassium channel J4 (hippocampal inward rectifier, HIR, HRK1, HIRK2, KIR2.3), the KDELR3 gene for KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulu... /FEA=mRNA_5 /DB_XREF=gi:2832593 /UG=Hs.6179 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 17 (72kD) /FL=gb:BC000595.1 gb:NM_006386.2 gb:U59321.1 Z97056 DEAD (Asp-Glu-Ala-Asp) box helicase 17 DDX17 10521 NM_001098504 /// NM_001098505 /// NM_006386 /// NM_030881 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0033148 // positive regulation of intracellular estrogen receptor signaling pathway // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0072358 // cardiovascular system development // inferred from electronic annotation /// 2001014 // regulation of skeletal muscle cell differentiation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003723 // RNA binding // traceable author statement /// 0003724 // RNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008186 // RNA-dependent ATPase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 781.65 989.55 9.90 0.00 0.00 -4.42
202220_at 202220_at NM_014949 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014949.1 /DEF=Homo sapiens KIAA0907 protein (KIAA0907), mRNA. /FEA=mRNA /GEN=KIAA0907 /PROD=KIAA0907 protein /DB_XREF=gi:7662371 /UG=Hs.24656 KIAA0907 protein /FL=gb:AB020714.1 gb:NM_014949.1 NM_014949 KIAA0907 KIAA0907 22889 NM_014949 0003723 // RNA binding // inferred from electronic annotation 111.18 125.74 9.90 0.00 0.00 -4.42
212036_s_at 212036_s_at AW152664 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW152664 /FEA=EST /DB_XREF=gi:6200564 /DB_XREF=est:xf77g02.x1 /CLONE=IMAGE:2624114 /UG=Hs.44499 pinin, desmosome associated protein AW152664 pinin, desmosome associated protein PNN 5411 NM_002687 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005882 // intermediate filament // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030057 // desmosome // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005198 // structural molecule activity // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 121.35 86.22 9.88 0.00 0.00 -4.42
202239_at 202239_at NM_006437 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006437.2 /DEF=Homo sapiens ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 (ADPRTL1), mRNA. /FEA=mRNA /GEN=ADPRTL1 /PROD=poly(ADP-ribosyl)transferase-like 1 /DB_XREF=gi:11496990 /UG=Hs.77225 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 /FL=gb:NM_006437.2 gb:AF057160.1 gb:AF158255.1 NM_006437 poly (ADP-ribose) polymerase family, member 4 PARP4 143 NM_006437 0006281 // DNA repair // non-traceable author statement /// 0006464 // cellular protein modification process // inferred from direct assay /// 0006471 // protein ADP-ribosylation // non-traceable author statement /// 0006810 // transport // non-traceable author statement /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // non-traceable author statement /// 0008219 // cell death // inferred from mutant phenotype /// 0042493 // response to drug // non-traceable author statement 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 0003950 // NAD+ ADP-ribosyltransferase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay 128.45 244.28 9.88 0.00 0.00 -4.42
202911_at 202911_at NM_000179 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000179.1 /DEF=Homo sapiens mutS (E. coli) homolog 6 (MSH6), mRNA. /FEA=mRNA /GEN=MSH6 /PROD=mutS (E. coli) homolog 6 /DB_XREF=gi:4504190 /UG=Hs.3248 mutS (E. coli) homolog 6 /FL=gb:U28946.1 gb:BC004246.1 gb:NM_000179.1 gb:U54777.2 NM_000179 mutS homolog 6 MSH6 2956 NM_000179 /// NM_001281492 /// NM_001281493 /// NM_001281494 /// XM_005264271 0000710 // meiotic mismatch repair // not recorded /// 0000710 // meiotic mismatch repair // inferred from sequence or structural similarity /// 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006281 // DNA repair // inferred from direct assay /// 0006298 // mismatch repair // inferred from direct assay /// 0006298 // mismatch repair // inferred from genetic interaction /// 0006298 // mismatch repair // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // not recorded /// 0008340 // determination of adult lifespan // inferred from sequence or structural similarity /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from sequence or structural similarity /// 0009411 // response to UV // not recorded /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016446 // somatic hypermutation of immunoglobulin genes // inferred from sequence or structural similarity /// 0016447 // somatic recombination of immunoglobulin gene segments // inferred from sequence or structural similarity /// 0043570 // maintenance of DNA repeat elements // inferred from mutant phenotype /// 0045190 // isotype switching // not recorded /// 0045190 // isotype switching // inferred from sequence or structural similarity /// 0045910 // negative regulation of DNA recombination // inferred from direct assay /// 0051096 // positive regulation of helicase activity // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // inferred from sequence or structural similarity 0000228 // nuclear chromosome // not recorded /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0032301 // MutSalpha complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000400 // four-way junction DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from direct assay /// 0030983 // mismatched DNA binding // inferred from direct assay /// 0032137 // guanine/thymine mispair binding // inferred from direct assay /// 0032142 // single guanine insertion binding // inferred from direct assay /// 0032143 // single thymine insertion binding // inferred from direct assay /// 0032357 // oxidized purine DNA binding // inferred from direct assay /// 0032405 // MutLalpha complex binding // inferred from direct assay /// 0035064 // methylated histone binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay 134.93 175.81 9.88 0.00 0.00 -4.42
218071_s_at 218071_s_at NM_014160 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014160.2 /DEF=Homo sapiens HSPC070 protein (HSPC070), mRNA. /FEA=mRNA /GEN=HSPC070 /PROD=HSPC070 protein /DB_XREF=gi:8850222 /UG=Hs.279474 HSPC070 protein /FL=gb:AF302084.1 gb:AF161555.2 gb:NM_014160.2 NM_014160 makorin ring finger protein 2 MKRN2 23609 NM_001271707 /// NM_014160 0016567 // protein ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 86.27 98.56 9.86 0.00 0.00 -4.42
216215_s_at 216215_s_at AL049748 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049748 /DEF=Human DNA sequence from clone RP1-41P2 on chromosome 22 Contains the 3 part of the RBM9 gene for RNA binding motif protein 9 and the 3 part of the gene for a novel protein similar to part of APOL (apolipoprotein L) and TNF-inducible protein CG12... /FEA=mRNA_2 /DB_XREF=gi:6572235 /UG=Hs.5011 RNA binding motif protein 9 AL049748 RNA binding protein, fox-1 homolog (C. elegans) 2 RBFOX2 23543 NM_001031695 /// NM_001082576 /// NM_001082577 /// NM_001082578 /// NM_001082579 /// NM_014309 /// XM_005261428 /// XM_005261429 /// XM_005261430 /// XM_005261431 /// XM_005261432 /// XM_005261433 /// XM_005261435 /// XM_005261437 /// XM_006724185 /// XM_006724186 /// XM_006724187 /// XM_006724188 /// XM_006724189 /// XM_006724190 /// XM_006724191 /// XM_006724192 /// XM_006724193 /// XM_006724194 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010724 // regulation of definitive erythrocyte differentiation // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0021942 // radial glia guided migration of Purkinje cell // inferred from electronic annotation /// 0030520 // intracellular estrogen receptor signaling pathway // inferred from direct assay /// 0042127 // regulation of cell proliferation // traceable author statement /// 0043484 // regulation of RNA splicing // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 207.35 231.38 9.84 0.00 0.00 -4.42
202892_at 202892_at NM_004661 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004661.1 /DEF=Homo sapiens CDC23 (cell division cycle 23, yeast, homolog) (CDC23), mRNA. /FEA=mRNA /GEN=CDC23 /PROD=cell division cycle 23, yeast homolog; CDC23 /DB_XREF=gi:4757947 /UG=Hs.153546 CDC23 (cell division cycle 23, yeast, homolog) /FL=gb:AF053977.1 gb:AB011472.1 gb:NM_004661.1 gb:AF191341.1 NM_004661 cell division cycle 23 CDC23 8697 NM_004661 0000080 // mitotic G1 phase // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007049 // cell cycle // traceable author statement /// 0007067 // mitotic nuclear division // inferred from direct assay /// 0007080 // mitotic metaphase plate congression // inferred from direct assay /// 0007091 // metaphase/anaphase transition of mitotic cell cycle // traceable author statement /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0007096 // regulation of exit from mitosis // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005622 // intracellular // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 82.10 91.90 9.84 0.00 0.00 -4.42
211113_s_at 211113_s_at U34919 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U34919.1 /DEF=Human white homolog (white) mRNA, complete cds. /FEA=mRNA /GEN=white /PROD=white homolog /DB_XREF=gi:1314276 /UG=Hs.10237 ATP-binding cassette, sub-family G (WHITE), member 1 /FL=gb:U34919.1 U34919 ATP-binding cassette, sub-family G (WHITE), member 1 ABCG1 9619 NM_004915 /// NM_016818 /// NM_207174 /// NM_207627 /// NM_207628 /// NM_207629 /// NM_207630 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from direct assay /// 0009720 // detection of hormone stimulus // non-traceable author statement /// 0010033 // response to organic substance // inferred from direct assay /// 0010745 // negative regulation of macrophage derived foam cell differentiation // traceable author statement /// 0010872 // regulation of cholesterol esterification // inferred from sequence or structural similarity /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // traceable author statement /// 0010888 // negative regulation of lipid storage // inferred from electronic annotation /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // inferred from mutant phenotype /// 0033344 // cholesterol efflux // inferred from direct assay /// 0033700 // phospholipid efflux // inferred from mutant phenotype /// 0033993 // response to lipid // inferred from direct assay /// 0034374 // low-density lipoprotein particle remodeling // inferred from sequence or structural similarity /// 0034375 // high-density lipoprotein particle remodeling // inferred from sequence or structural similarity /// 0034436 // glycoprotein transport // inferred from direct assay /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0042632 // cholesterol homeostasis // inferred from direct assay /// 0042987 // amyloid precursor protein catabolic process // inferred from direct assay /// 0043691 // reverse cholesterol transport // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from sequence or structural similarity /// 0055085 // transmembrane transport // traceable author statement /// 0055091 // phospholipid homeostasis // inferred from mutant phenotype /// 0055099 // response to high density lipoprotein particle // inferred from electronic annotation /// 1901998 // toxin transport // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred by curator /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred by curator /// 0005548 // phospholipid transporter activity // inferred from direct assay /// 0015485 // cholesterol binding // inferred by curator /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // inferred from direct assay /// 0017127 // cholesterol transporter activity // traceable author statement /// 0019534 // toxin transporter activity // inferred from direct assay /// 0034041 // sterol-transporting ATPase activity // inferred from direct assay /// 0034437 // glycoprotein transporter activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043531 // ADP binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // non-traceable author statement -105.28 92.59 -9.84 0.00 0.00 -4.42
220044_x_at 220044_x_at NM_016424 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016424.1 /DEF=Homo sapiens cisplatin resistance-associated overexpressed protein (LUC7A), mRNA. /FEA=mRNA /GEN=LUC7A /PROD=cisplatin resistance-associated overexpressedprotein /DB_XREF=gi:7706534 /UG=Hs.3688 cisplatin resistance-associated overexpressed protein /FL=gb:NM_016424.1 NM_016424 LUC7-like 3 (S. cerevisiae) LUC7L3 51747 NM_006107 /// NM_016424 /// XM_005257448 /// XM_005257449 /// XM_005257450 /// XM_005257451 /// XM_005257452 /// XM_005257454 /// XM_005257455 /// XM_006721943 /// XR_243663 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005685 // U1 snRNP // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 182.12 149.74 9.82 0.00 0.00 -4.42
201494_at 201494_at NM_005040 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005040.1 /DEF=Homo sapiens prolylcarboxypeptidase (angiotensinase C) (PRCP), mRNA. /FEA=mRNA /GEN=PRCP /PROD=prolylcarboxypeptidase (angiotensinase C) /DB_XREF=gi:4826939 /UG=Hs.75693 prolylcarboxypeptidase (angiotensinase C) /FL=gb:L13977.1 gb:NM_005040.1 NM_005040 prolylcarboxypeptidase (angiotensinase C) PRCP 5547 NM_005040 /// NM_199418 /// XM_005274093 0006508 // proteolysis // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0007597 // blood coagulation, intrinsic pathway // traceable author statement 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -442.18 1030.26 -9.79 0.00 0.00 -4.42
200666_s_at 200666_s_at NM_006145 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006145.1 /DEF=Homo sapiens heat shock 40kD protein 1 (HSPF1), mRNA. /FEA=mRNA /GEN=HSPF1 /PROD=heat shock 40kD protein 1 /DB_XREF=gi:5453689 /UG=Hs.82646 DnaJ (Hsp40) homolog, subfamily B, member 1 /FL=gb:BC002352.1 gb:NM_006145.1 gb:D49547.1 NM_006145 DnaJ (Hsp40) homolog, subfamily B, member 1 DNAJB1 3337 NM_006145 /// XM_006722733 /// XM_006722734 /// XM_006722735 /// XM_006722736 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0070389 // chaperone cofactor-dependent protein refolding // inferred from direct assay /// 0090084 // negative regulation of inclusion body assembly // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001671 // ATPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction /// 0051117 // ATPase binding // inferred from physical interaction 99.80 158.62 9.77 0.00 0.00 -4.42
823_at 823_at U84487 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank U84487 /FEATURE= /DEFINITION=HSU84487 Human CX3C chemokine precursor, mRNA, alternatively spliced, complete cds U84487 chemokine (C-X3-C motif) ligand 1 CX3CL1 6376 NM_002996 0006935 // chemotaxis // inferred from direct assay /// 0006952 // defense response // traceable author statement /// 0006955 // immune response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030595 // leukocyte chemotaxis // traceable author statement /// 0032914 // positive regulation of transforming growth factor beta1 production // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0048247 // lymphocyte chemotaxis // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from expression pattern /// 0050902 // leukocyte adhesive activation // traceable author statement /// 0051041 // positive regulation of calcium-independent cell-cell adhesion // inferred from direct assay /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // traceable author statement -141.23 98.21 -9.76 0.00 0.00 -4.42
220990_s_at 220990_s_at NM_030938 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030938.1 /DEF=Homo sapiens hypothetical protein DKFZp566I133 (DKFZP566I133), mRNA. /FEA=mRNA /GEN=DKFZP566I133 /PROD=hypothetical protein DKFZp566I133 /DB_XREF=gi:13569906 /FL=gb:NM_030938.1 NM_030938 microRNA 21 /// vacuole membrane protein 1 MIR21 /// VMP1 81671 /// 406991 NM_030938 /// NR_029493 0006914 // autophagy // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0010506 // regulation of autophagy // inferred from sequence or structural similarity /// 0016337 // single organismal cell-cell adhesion // inferred from mutant phenotype /// 0034329 // cell junction assembly // inferred from mutant phenotype 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // inferred from sequence or structural similarity /// 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 107.90 257.48 9.74 0.00 0.00 -4.42
209946_at 209946_at U58111 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U58111.1 /DEF=Human FLT4 ligand mRNA, complete cds. /FEA=mRNA /PROD=FLT4 ligand DHM /DB_XREF=gi:1373426 /UG=Hs.79141 vascular endothelial growth factor C /FL=gb:U43142.1 gb:U58111.1 gb:NM_005429.1 U58111 vascular endothelial growth factor C VEGFC 7424 NM_005429 0001525 // angiogenesis // inferred from electronic annotation /// 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006929 // substrate-dependent cell migration // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0031954 // positive regulation of protein autophosphorylation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050714 // positive regulation of protein secretion // inferred from electronic annotation /// 0050918 // positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060754 // positive regulation of mast cell chemotaxis // inferred from direct assay /// 1901492 // positive regulation of lymphangiogenesis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // inferred from direct assay /// 0043185 // vascular endothelial growth factor receptor 3 binding // inferred from electronic annotation -212.57 208.89 -9.68 0.00 0.00 -4.42
207543_s_at 207543_s_at NM_000917 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000917.1 /DEF=Homo sapiens procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I (P4HA1), mRNA. /FEA=mRNA /GEN=P4HA1 /PROD=procollagen-proline, 2-oxoglutarate4-dioxygenase (proline 4-hydroxylase), alpha polypeptideI /DB_XREF=gi:4505564 /UG=Hs.76768 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I /FL=gb:M24486.1 gb:NM_000917.1 NM_000917 prolyl 4-hydroxylase, alpha polypeptide I P4HA1 5033 NM_000917 /// NM_001017962 /// NM_001142595 /// NM_001142596 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from electronic annotation /// 0019511 // peptidyl-proline hydroxylation // inferred from electronic annotation /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005581 // collagen trimer // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -200.42 300.71 -9.67 0.00 0.00 -4.42
217492_s_at 217492_s_at AF023139 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF023139.1 /DEF=Homo sapiens multiple advanced cancers protein (MMAC1) pseudo mRNA, partial sequence. /FEA=mRNA /GEN=MMAC1 /DB_XREF=gi:2749973 /UG=Hs.278506 phosphatase and tensin homolog (mutated in multiple advanced cancers 1), pseudogene 1 AF023139 phosphatase and tensin homolog /// phosphatase and tensin homolog pseudogene 1 (functional) PTEN /// PTENP1 5728 /// 11191 NM_000314 /// NR_023917 /// XM_006717926 /// XM_006717927 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0002902 // regulation of B cell apoptotic process // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006915 // apoptotic process // inferred from sequence or structural similarity /// 0007092 // activation of mitotic anaphase-promoting complex activity // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007270 // neuron-neuron synaptic transmission // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from sequence or structural similarity /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0007613 // memory // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010975 // regulation of neuron projection development // inferred from sequence or structural similarity /// 0014067 // negative regulation of phosphatidylinositol 3-kinase signaling // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0021542 // dentate gyrus development // inferred from sequence or structural similarity /// 0021955 // central nervous system neuron axonogenesis // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031642 // negative regulation of myelination // inferred from electronic annotation /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0031658 // negative regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0032286 // central nervous system myelin maintenance // inferred from sequence or structural similarity /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032535 // regulation of cellular component size // inferred from sequence or structural similarity /// 0033032 // regulation of myeloid cell apoptotic process // inferred from electronic annotation /// 0033198 // response to ATP // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from sequence or structural similarity /// 0035176 // social behavior // inferred from sequence or structural similarity /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0042711 // maternal behavior // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from sequence or structural similarity /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045475 // locomotor rhythm // inferred from sequence or structural similarity /// 0045792 // negative regulation of cell size // inferred from sequence or structural similarity /// 0046621 // negative regulation of organ growth // inferred from sequence or structural similarity /// 0046685 // response to arsenic-containing substance // inferred from electronic annotation /// 0046855 // inositol phosphate dephosphorylation // inferred from direct assay /// 0046856 // phosphatidylinositol dephosphorylation // inferred from direct assay /// 0046856 // phosphatidylinositol dephosphorylation // inferred from mutant phenotype /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0048853 // forebrain morphogenesis // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from sequence or structural similarity /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050765 // negative regulation of phagocytosis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from mutant phenotype /// 0051898 // negative regulation of protein kinase B signaling // inferred from mutant phenotype /// 0060024 // rhythmic synaptic transmission // inferred from sequence or structural similarity /// 0060070 // canonical Wnt signaling pathway // inferred from direct assay /// 0060074 // synapse maturation // inferred from sequence or structural similarity /// 0060134 // prepulse inhibition // inferred from sequence or structural similarity /// 0060179 // male mating behavior // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060997 // dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0061002 // negative regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0090071 // negative regulation of ribosome biogenesis // inferred from electronic annotation /// 0090344 // negative regulation of cell aging // inferred from electronic annotation /// 0090394 // negative regulation of excitatory postsynaptic membrane potential // inferred from sequence or structural similarity /// 0097105 // presynaptic membrane assembly // inferred from sequence or structural similarity /// 0097107 // postsynaptic density assembly // inferred from sequence or structural similarity /// 2000060 // positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from direct assay /// 2000463 // positive regulation of excitatory postsynaptic membrane potential // inferred from sequence or structural similarity /// 2000808 // negative regulation of synaptic vesicle clustering // inferred from sequence or structural similarity /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0035749 // myelin sheath adaxonal region // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from direct assay /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from sequence or structural similarity /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004438 // phosphatidylinositol-3-phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0010997 // anaphase-promoting complex binding // inferred from physical interaction /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // inferred from direct assay /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0051717 // inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity // inferred from direct assay /// 0051717 // inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity // traceable author statement /// 0051800 // phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity // inferred from direct assay /// 0051800 // phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity // traceable author statement -134.92 177.39 -9.65 0.00 0.00 -4.42
201193_at 201193_at NM_005896 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005896.1 /DEF=Homo sapiens isocitrate dehydrogenase 1 (NADP+), soluble (IDH1), mRNA. /FEA=mRNA /GEN=IDH1 /PROD=isocitrate dehydrogenase 1 (NADP+), soluble /DB_XREF=gi:5174470 /UG=Hs.11223 isocitrate dehydrogenase 1 (NADP+), soluble /FL=gb:AF020038.1 gb:AF113917.1 gb:NM_005896.1 gb:AL136702.1 NM_005896 isocitrate dehydrogenase 1 (NADP+), soluble IDH1 3417 NM_001282386 /// NM_001282387 /// NM_005896 0006097 // glyoxylate cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // inferred from direct assay /// 0006103 // 2-oxoglutarate metabolic process // inferred from direct assay /// 0006103 // 2-oxoglutarate metabolic process // traceable author statement /// 0006740 // NADPH regeneration // traceable author statement /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0004450 // isocitrate dehydrogenase (NADP+) activity // not recorded /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 146.85 272.45 9.63 0.00 0.00 -4.42
217779_s_at 217779_s_at NM_017761 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017761.1 /DEF=Homo sapiens hypothetical protein FLJ20312 (FLJ20312), mRNA. /FEA=mRNA /GEN=FLJ20312 /PROD=hypothetical protein FLJ20312 /DB_XREF=gi:8923294 /UG=Hs.7862 hypothetical protein FLJ20312 /FL=gb:BC001959.1 gb:AF151042.1 gb:NM_017761.1 NM_017761 proline-rich nuclear receptor coactivator 2 PNRC2 55629 NM_017761 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from direct assay /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from sequence or structural similarity /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0021575 // hindbrain morphogenesis // inferred from electronic annotation /// 0021575 // hindbrain morphogenesis // inferred from sequence or structural similarity /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // inferred from sequence or structural similarity /// 0031087 // deadenylation-independent decapping of nuclear-transcribed mRNA // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032321 // positive regulation of Rho GTPase activity // inferred from mutant phenotype /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035024 // negative regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048041 // focal adhesion assembly // inferred from electronic annotation /// 0048041 // focal adhesion assembly // inferred from sequence or structural similarity /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051497 // negative regulation of stress fiber assembly // inferred from direct assay /// 1900119 // positive regulation of execution phase of apoptosis // inferred from direct assay 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0030675 // Rac GTPase activator activity // inferred from direct assay /// 0042169 // SH2 domain binding // inferred from physical interaction 260.00 351.05 9.62 0.00 0.00 -4.42
212641_at 212641_at AL023584 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL023584 /DEF=Human DNA sequence from clone 67K17 on chromosome 6q24.1-24.3. Contains the HIVEP2 (Schnurri-2) gene for HIV type 1 Enhancer-binding Protein 2, and a possible pseudogene in an intron of this gene. Contains STSs and GSSs and an AAAT repeat polymorp... /FEA=mRNA /DB_XREF=gi:3790154 /UG=Hs.75063 human immunodeficiency virus type I enhancer-binding protein 2 /FL=gb:NM_006734.1 AL023584 human immunodeficiency virus type I enhancer binding protein 2 HIVEP2 3097 NM_006734 /// XM_005266957 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -75.70 42.83 -9.62 0.00 0.00 -4.42
204337_at 204337_at AL514445 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL514445 /FEA=EST /DB_XREF=gi:12777939 /DB_XREF=est:AL514445 /CLONE=CL0BB010ZF08 (3 prime) /UG=Hs.227571 regulator of G-protein signalling 4 /FL=gb:NM_005613.2 gb:BC000737.1 AL514445 regulator of G-protein signaling 4 RGS4 5999 NM_001102445 /// NM_001113380 /// NM_001113381 /// NM_005613 0000188 // inactivation of MAPK activity // traceable author statement /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0001965 // G-protein alpha-subunit binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005516 // calmodulin binding // traceable author statement 246.20 338.05 9.61 0.00 0.00 -4.42
210426_x_at 210426_x_at U04897 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U04897.1 /DEF=Human orphan hormone nuclear receptor RORalpha1 mRNA, complete cds. /FEA=mRNA /PROD=RORalpha1 /DB_XREF=gi:451563 /UG=Hs.2156 RAR-related orphan receptor A /FL=gb:U04897.1 U04897 RAR-related orphan receptor A RORA 6095 NM_002943 /// NM_134260 /// NM_134261 /// NM_134262 /// XM_005254584 0001525 // angiogenesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006805 // xenobiotic metabolic process // inferred from sequence or structural similarity /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from mutant phenotype /// 0010906 // regulation of glucose metabolic process // inferred from sequence or structural similarity /// 0019218 // regulation of steroid metabolic process // inferred from sequence or structural similarity /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021930 // cerebellar granule cell precursor proliferation // inferred from sequence or structural similarity /// 0030522 // intracellular receptor signaling pathway // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0036315 // cellular response to sterol // inferred from direct assay /// 0036315 // cellular response to sterol // inferred from mutant phenotype /// 0042692 // muscle cell differentiation // inferred from mutant phenotype /// 0042753 // positive regulation of circadian rhythm // inferred from sequence or structural similarity /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046068 // cGMP metabolic process // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0060850 // regulation of transcription involved in cell fate commitment // inferred from sequence or structural similarity /// 0070328 // triglyceride homeostasis // inferred from mutant phenotype /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 0072539 // T-helper 17 cell differentiation // inferred from sequence or structural similarity /// 2000188 // regulation of cholesterol homeostasis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0001222 // transcription corepressor binding // inferred from physical interaction /// 0001223 // transcription coactivator binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008142 // oxysterol binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0098531 // direct ligand regulated sequence-specific DNA binding transcription factor activity // inferred from direct assay -86.30 76.70 -9.60 0.00 0.00 -4.42
202497_x_at 202497_x_at AI631159 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI631159 /FEA=EST /DB_XREF=gi:4682489 /DB_XREF=est:ts93d05.x1 /CLONE=IMAGE:2238825 /UG=Hs.7594 solute carrier family 2 (facilitated glucose transporter), member 3 /FL=gb:M20681.1 gb:NM_006931.1 AI631159 solute carrier family 2 (facilitated glucose transporter), member 3 SLC2A3 6515 NM_006931 0005975 // carbohydrate metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0019852 // L-ascorbic acid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation -282.73 149.51 -9.59 0.00 0.00 -4.42
200843_s_at 200843_s_at NM_004446 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004446.1 /DEF=Homo sapiens glutamyl-prolyl-tRNA synthetase (EPRS), mRNA. /FEA=mRNA /GEN=EPRS /PROD=glutamyl-prolyl tRNA synthetase /DB_XREF=gi:4758293 /UG=Hs.55921 glutamyl-prolyl-tRNA synthetase /FL=gb:NM_004446.1 NM_004446 glutamyl-prolyl-tRNA synthetase EPRS 2058 NM_004446 0006412 // translation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006424 // glutamyl-tRNA aminoacylation // inferred from electronic annotation /// 0006433 // prolyl-tRNA aminoacylation // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0043039 // tRNA aminoacylation // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // traceable author statement /// 0004827 // proline-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation /// 0035613 // RNA stem-loop binding // inferred from direct assay -171.93 298.91 -9.58 0.00 0.00 -4.42
201276_at 201276_at AF267863 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF267863.1 /DEF=Homo sapiens DC43 mRNA, complete cds. /FEA=mRNA /PROD=DC43 /DB_XREF=gi:12006052 /UG=Hs.77690 RAB5B, member RAS oncogene family /FL=gb:AF267863.1 gb:NM_002868.1 AF267863 RAB5B, member RAS oncogene family RAB5B 5869 NM_001252036 /// NM_001252037 /// NM_002868 /// XM_005269051 /// XM_005269052 /// XM_006719540 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0030742 // GTP-dependent protein binding // inferred from direct assay 128.63 135.01 9.57 0.00 0.00 -4.42
201146_at 201146_at NM_006164 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006164.1 /DEF=Homo sapiens nuclear factor (erythroid-derived 2)-like 2 (NFE2L2), mRNA. /FEA=mRNA /GEN=NFE2L2 /PROD=nuclear factor (erythroid-derived 2)-like 2 /DB_XREF=gi:5453775 /UG=Hs.155396 nuclear factor (erythroid-derived 2)-like 2 /FL=gb:NM_006164.1 NM_006164 nuclear factor, erythroid 2-like 2 NFE2L2 4780 NM_001145412 /// NM_001145413 /// NM_006164 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0010499 // proteasomal ubiquitin-independent protein catabolic process // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay /// 0030194 // positive regulation of blood coagulation // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0036003 // positive regulation of transcription from RNA polymerase II promoter in response to stress // inferred from mutant phenotype /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from mutant phenotype /// 0071356 // cellular response to tumor necrosis factor // inferred from mutant phenotype /// 0071499 // cellular response to laminar fluid shear stress // inferred from mutant phenotype /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype /// 2000121 // regulation of removal of superoxide radicals // inferred from electronic annotation /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from mutant phenotype /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -123.80 331.18 -9.56 0.00 0.00 -4.42
201325_s_at 201325_s_at NM_001423 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001423.1 /DEF=Homo sapiens epithelial membrane protein 1 (EMP1), mRNA. /FEA=mRNA /GEN=EMP1 /PROD=epithelial membrane protein 1 /DB_XREF=gi:4503558 /UG=Hs.79368 epithelial membrane protein 1 /FL=gb:U77085.1 gb:U43916.1 gb:NM_001423.1 NM_001423 epithelial membrane protein 1 EMP1 2012 NM_001423 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008544 // epidermis development // traceable author statement /// 0016049 // cell growth // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 288.58 370.71 9.56 0.00 0.00 -4.42
212660_at 212660_at AI735639 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI735639 /FEA=EST /DB_XREF=gi:5057163 /DB_XREF=est:at18h12.x1 /CLONE=IMAGE:2355527 /UG=Hs.9729 KIAA0239 protein AI735639 jade family PHD finger 2 JADE2 23338 NM_001289984 /// NM_001289985 /// NM_015288 /// XM_005271942 /// XM_005271943 /// XM_005271944 /// XM_005271945 /// XM_005271946 /// XM_005271947 /// XM_005271948 /// XM_005271949 /// XM_005271950 /// XM_005271951 0043966 // histone H3 acetylation // inferred from direct assay /// 0043981 // histone H4-K5 acetylation // inferred from direct assay /// 0043982 // histone H4-K8 acetylation // inferred from direct assay /// 0043983 // histone H4-K12 acetylation // inferred from direct assay /// 0043984 // histone H4-K16 acetylation // inferred from direct assay 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -126.32 180.64 -9.55 0.00 0.00 -4.42
209900_s_at 209900_s_at AL162079 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL162079.1 /DEF=Homo sapiens mRNA; cDNA DKFZp762B2310 (from clone DKFZp762B2310); complete cds. /FEA=mRNA /GEN=DKFZp762B2310 /PROD=hypothetical protein /DB_XREF=gi:7328161 /UG=Hs.75231 solute carrier family 16 (monocarboxylic acid transporters), member 1 /FL=gb:AL162079.1 AL162079 solute carrier family 16 (monocarboxylate transporter), member 1 SLC16A1 6566 NM_001166496 /// NM_003051 0006090 // pyruvate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015718 // monocarboxylic acid transport // traceable author statement /// 0015728 // mevalonate transport // traceable author statement /// 0035873 // lactate transmembrane transport // inferred from electronic annotation /// 0035879 // plasma membrane lactate transport // inferred from sequence or structural similarity /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008028 // monocarboxylic acid transmembrane transporter activity // traceable author statement /// 0015130 // mevalonate transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0097159 // organic cyclic compound binding // inferred from electronic annotation 103.70 163.43 9.55 0.00 0.00 -4.42
213027_at 213027_at AU146655 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU146655 /FEA=EST /DB_XREF=gi:11008176 /DB_XREF=est:AU146655 /CLONE=HEMBB1001133 /UG=Hs.288178 Homo sapiens cDNA FLJ11968 fis, clone HEMBB1001133 AU146655 Homo sapiens RNA, has-miR-mizuguchi-9, complete sequence. /// TROVE domain family, member 2 AK022030 /// TROVE2 6738 NM_001042369 /// NM_001042370 /// NM_001173524 /// NM_001173525 /// NM_004600 /// NR_033393 /// XM_006711495 /// XM_006711496 /// XM_006711497 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0030030 // cell projection organization // inferred from electronic annotation /// 0060271 // cilium morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 91.50 103.50 9.55 0.00 0.00 -4.42
218237_s_at 218237_s_at NM_030674 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030674.1 /DEF=Homo sapiens amino acid transporter system A1 (ATA1), mRNA. /FEA=mRNA /GEN=ATA1 /PROD=amino acid transporter system A1 /DB_XREF=gi:13492978 /UG=Hs.18272 amino acid transporter system A1 /FL=gb:AF271070.1 gb:NM_030674.1 NM_030674 solute carrier family 38, member 1 SLC38A1 81539 NM_001077484 /// NM_001278387 /// NM_001278388 /// NM_001278389 /// NM_001278390 /// NM_030674 0001504 // neurotransmitter uptake // traceable author statement /// 0003333 // amino acid transmembrane transport // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0006868 // glutamine transport // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0015804 // neutral amino acid transport // non-traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0030424 // axon // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005283 // sodium:amino acid symporter activity // non-traceable author statement /// 0015175 // neutral amino acid transmembrane transporter activity // non-traceable author statement /// 0015186 // L-glutamine transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation -426.63 440.49 -9.54 0.00 0.00 -4.42
203687_at 203687_at NM_002996 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002996.1 /DEF=Homo sapiens small inducible cytokine subfamily D (Cys-X3-Cys), member 1 (fractalkine, neurotactin) (SCYD1), mRNA. /FEA=mRNA /GEN=SCYD1 /PROD=small inducible cytokine subfamily D(Cys-X3-Cys), member 1 (fractalkine, neurotactin) /DB_XREF=gi:4506856 /UG=Hs.80420 small inducible cytokine subfamily D (Cys-X3-Cys), member 1 (fractalkine, neurotactin) /FL=gb:BC001163.1 gb:U84487.1 gb:U91835.1 gb:NM_002996.1 NM_002996 chemokine (C-X3-C motif) ligand 1 CX3CL1 6376 NM_002996 0006935 // chemotaxis // inferred from direct assay /// 0006952 // defense response // traceable author statement /// 0006955 // immune response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030595 // leukocyte chemotaxis // traceable author statement /// 0032914 // positive regulation of transforming growth factor beta1 production // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0048247 // lymphocyte chemotaxis // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from expression pattern /// 0050902 // leukocyte adhesive activation // traceable author statement /// 0051041 // positive regulation of calcium-independent cell-cell adhesion // inferred from direct assay /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // traceable author statement -86.15 61.02 -9.54 0.00 0.00 -4.42
209278_s_at 209278_s_at L27624 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L27624.1 /DEF=Homo sapiens tissue factor pathway inhibitor-2 mRNA, complete cds. /FEA=mRNA /PROD=tissue factor pathway inhibitor-2 /DB_XREF=gi:441149 /UG=Hs.295944 tissue factor pathway inhibitor 2 /FL=gb:BC005330.1 gb:L27624.1 gb:D29992.1 gb:NM_006528.1 L27624 tissue factor pathway inhibitor 2 TFPI2 7980 NM_001271003 /// NM_001271004 /// NM_006528 0006184 // GTP catabolic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007599 // hemostasis // inferred from electronic annotation /// 0007602 // phototransduction // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0097381 // photoreceptor disc membrane // traceable author statement 0003924 // GTPase activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 323.57 1091.06 9.54 0.00 0.00 -4.42
211678_s_at 211678_s_at AF090934 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF090934.1 /DEF=Homo sapiens clone HQ0518 PRO0518 mRNA, complete cds. /FEA=mRNA /PROD=PRO0518 /DB_XREF=gi:6690233 /FL=gb:AF090934.1 AF090934 ring finger protein 114 RNF114 55905 NM_018683 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0032274 // gonadotropin secretion // inferred from expression pattern /// 0032274 // gonadotropin secretion // inferred from mutant phenotype /// 0034337 // RNA folding // inferred from direct assay /// 0040019 // positive regulation of embryonic development // inferred from sequence or structural similarity /// 0044029 // hypomethylation of CpG island // inferred from sequence or structural similarity /// 0045746 // negative regulation of Notch signaling pathway // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048743 // positive regulation of skeletal muscle fiber development // inferred from sequence or structural similarity /// 2000279 // negative regulation of DNA biosynthetic process // inferred from direct assay 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 80.78 97.96 9.53 0.00 0.00 -4.42
219862_s_at 219862_s_at NM_012336 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012336.1 /DEF=Homo sapiens nuclear prelamin A recognition factor (NARF), mRNA. /FEA=mRNA /GEN=NARF /PROD=nuclear prelamin A recognition factor /DB_XREF=gi:6912523 /UG=Hs.256526 nuclear prelamin A recognition factor /FL=gb:AF128406.1 gb:NM_012336.1 NM_012336 nuclear prelamin A recognition factor NARF 26502 NM_001038618 /// NM_001083608 /// NM_012336 /// NM_031968 /// XM_005256340 /// XM_006722278 0005634 // nucleus // inferred from direct assay /// 0005638 // lamin filament // inferred from direct assay /// 0005652 // nuclear lamina // traceable author statement /// 0031981 // nuclear lumen // inferred from direct assay 0005521 // lamin binding // inferred from physical interaction -111.90 180.80 -9.52 0.00 0.00 -4.42
218150_at 218150_at NM_012097 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012097.1 /DEF=Homo sapiens ADP-ribosylation factor-like 5 (ARL5), mRNA. /FEA=mRNA /GEN=ARL5 /PROD=ADP-ribosylation factor-like 5 /DB_XREF=gi:6912243 /UG=Hs.42500 ADP-ribosylation factor-like 5 /FL=gb:BC001254.1 gb:AF100740.1 gb:NM_012097.1 NM_012097 ADP-ribosylation factor-like 5A /// uncharacterized LOC101929356 ARL5A /// LOC101929356 26225 /// 101929356 NM_001037174 /// NM_012097 /// NM_177985 /// XR_241333 /// XR_249228 /// XR_251200 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 203.93 367.59 9.50 0.00 0.00 -4.42
212534_at 212534_at AU144066 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU144066 /FEA=EST /DB_XREF=gi:11005587 /DB_XREF=est:AU144066 /CLONE=HEMBA1000798 /UG=Hs.285519 Homo sapiens cDNA FLJ11904 fis, clone HEMBB1000048 AU144066 zinc finger protein 24 ZNF24 7572 NM_006965 /// XM_005258341 /// XM_005258342 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0042552 // myelination // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // non-traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 108.47 140.74 9.49 0.00 0.00 -4.42
211974_x_at 211974_x_at AL513759 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL513759 /FEA=EST /DB_XREF=gi:12777253 /DB_XREF=est:AL513759 /CLONE=CL0BA008ZD02 (3 prime) /UG=Hs.278573 Homo sapiens similar to J KAPPA-RECOMBINATION SIGNAL BINDING PROTEIN (M. musculus) (LOC65437), mRNA AL513759 recombination signal binding protein for immunoglobulin kappa J region RBPJ 3516 NM_005349 /// NM_015874 /// NM_203283 /// NM_203284 /// XM_005248161 /// XM_006713962 /// XM_006713963 /// XM_006713964 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002437 // inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003157 // endocardium development // inferred from electronic annotation /// 0003160 // endocardium morphogenesis // inferred from sequence or structural similarity /// 0003198 // epithelial to mesenchymal transition involved in endocardial cushion formation // inferred from sequence or structural similarity /// 0003214 // cardiac left ventricle morphogenesis // inferred from sequence or structural similarity /// 0003222 // ventricular trabecula myocardium morphogenesis // inferred from sequence or structural similarity /// 0003256 // regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation // inferred from sequence or structural similarity /// 0006310 // DNA recombination // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006959 // humoral immune response // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // traceable author statement /// 0007221 // positive regulation of transcription of Notch receptor target // inferred from direct assay /// 0007507 // heart development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009912 // auditory receptor cell fate commitment // inferred from electronic annotation /// 0009957 // epidermal cell fate specification // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030279 // negative regulation of ossification // inferred from sequence or structural similarity /// 0030513 // positive regulation of BMP signaling pathway // inferred from sequence or structural similarity /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035912 // dorsal aorta morphogenesis // inferred from sequence or structural similarity /// 0036302 // atrioventricular canal development // inferred from sequence or structural similarity /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048733 // sebaceous gland development // inferred from electronic annotation /// 0048820 // hair follicle maturation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060486 // Clara cell differentiation // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from sequence or structural similarity /// 0060844 // arterial endothelial cell fate commitment // inferred from electronic annotation /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0072554 // blood vessel lumenization // inferred from sequence or structural similarity /// 0072602 // interleukin-4 secretion // inferred from electronic annotation /// 0097101 // blood vessel endothelial cell fate specification // inferred from sequence or structural similarity /// 1901186 // positive regulation of ERBB signaling pathway // inferred from sequence or structural similarity /// 1901189 // positive regulation of ephrin receptor signaling pathway // inferred from sequence or structural similarity /// 2000138 // positive regulation of cell proliferation involved in heart morphogenesis // inferred from sequence or structural similarity 0002193 // MAML1-RBP-Jkappa- ICN1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000150 // recombinase activity // non-traceable author statement /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from electronic annotation /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0000982 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation -153.60 314.00 -9.47 0.00 0.00 -4.42
209750_at 209750_at N32859 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N32859 /FEA=EST /DB_XREF=gi:1153258 /DB_XREF=est:yw88d02.s1 /CLONE=IMAGE:259299 /UG=Hs.37288 nuclear receptor subfamily 1, group D, member 2 /FL=gb:D16815.1 N32859 nuclear receptor subfamily 1, group D, member 2 NR1D2 9975 NM_001145425 /// NM_005126 /// NR_110524 /// XM_005265639 /// XM_006713451 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0019216 // regulation of lipid metabolic process // inferred from sequence or structural similarity /// 0030522 // intracellular receptor signaling pathway // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0055088 // lipid homeostasis // inferred from sequence or structural similarity /// 2000505 // regulation of energy homeostasis // inferred from sequence or structural similarity /// 2001014 // regulation of skeletal muscle cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0001046 // core promoter sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -106.88 98.29 -9.47 0.00 0.00 -4.42
217165_x_at 217165_x_at M10943 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:M10943 /DEF=Human metallothionein-If gene (hMT-If) /FEA=CDS /DB_XREF=gi:187540 /UG=Hs.203936 metallothionein 1F (functional) M10943 metallothionein 1F MT1F 4494 NM_005949 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005507 // copper ion binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046870 // cadmium ion binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -798.15 1093.35 -9.47 0.00 0.00 -4.42
209604_s_at 209604_s_at BC003070 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003070.1 /DEF=Homo sapiens, GATA-binding protein 3, clone MGC:2346, mRNA, complete cds. /FEA=mRNA /PROD=GATA-binding protein 3 /DB_XREF=gi:13111765 /UG=Hs.169946 GATA-binding protein 3 /FL=gb:BC003070.1 gb:M69106.1 gb:NM_002051.1 BC003070 GATA binding protein 3 GATA3 2625 NM_001002295 /// NM_002051 /// XM_005252442 /// XM_005252443 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001709 // cell fate determination // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from electronic annotation /// 0001775 // cell activation // inferred from electronic annotation /// 0001806 // type IV hypersensitivity // inferred from electronic annotation /// 0001819 // positive regulation of cytokine production // inferred from electronic annotation /// 0001822 // kidney development // inferred from mutant phenotype /// 0001823 // mesonephros development // inferred from sequence or structural similarity /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002572 // pro-T cell differentiation // inferred from electronic annotation /// 0003180 // aortic valve morphogenesis // inferred from sequence or structural similarity /// 0003215 // cardiac right ventricle morphogenesis // inferred from sequence or structural similarity /// 0003281 // ventricular septum development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006952 // defense response // traceable author statement /// 0006959 // humoral immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008584 // male gonad development // inferred from sequence or structural similarity /// 0009615 // response to virus // inferred from expression pattern /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from mutant phenotype /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred from sequence or structural similarity /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0031929 // TOR signaling // inferred from sequence or structural similarity /// 0032689 // negative regulation of interferon-gamma production // inferred from electronic annotation /// 0032703 // negative regulation of interleukin-2 production // inferred from electronic annotation /// 0032736 // positive regulation of interleukin-13 production // inferred from electronic annotation /// 0032753 // positive regulation of interleukin-4 production // inferred from sequence or structural similarity /// 0032754 // positive regulation of interleukin-5 production // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from direct assay /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035457 // cellular response to interferon-alpha // inferred from expression pattern /// 0035799 // ureter maturation // inferred from electronic annotation /// 0035898 // parathyroid hormone secretion // inferred from electronic annotation /// 0042035 // regulation of cytokine biosynthetic process // inferred from sequence or structural similarity /// 0042421 // norepinephrine biosynthetic process // inferred from sequence or structural similarity /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043370 // regulation of CD4-positive, alpha-beta T cell differentiation // inferred from electronic annotation /// 0043523 // regulation of neuron apoptotic process // inferred from electronic annotation /// 0043583 // ear development // inferred from mutant phenotype /// 0043627 // response to estrogen // inferred from expression pattern /// 0045061 // thymic T cell selection // inferred from electronic annotation /// 0045064 // T-helper 2 cell differentiation // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // inferred from sequence or structural similarity /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from mutant phenotype /// 0045786 // negative regulation of cell cycle // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048469 // cell maturation // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // inferred from sequence or structural similarity /// 0048538 // thymus development // inferred from electronic annotation /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from sequence or structural similarity /// 0048872 // homeostasis of number of cells // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0051569 // regulation of histone H3-K4 methylation // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0060017 // parathyroid gland development // inferred from electronic annotation /// 0060037 // pharyngeal system development // inferred from sequence or structural similarity /// 0060065 // uterus development // inferred from sequence or structural similarity /// 0060231 // mesenchymal to epithelial transition // inferred from direct assay /// 0060374 // mast cell differentiation // inferred from electronic annotation /// 0060676 // ureteric bud formation // inferred from sequence or structural similarity /// 0061085 // regulation of histone H3-K27 methylation // inferred from electronic annotation /// 0061290 // canonical Wnt signaling pathway involved in metanephric kidney development // inferred from sequence or structural similarity /// 0071345 // cellular response to cytokine stimulus // inferred from electronic annotation /// 0071353 // cellular response to interleukin-4 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071599 // otic vesicle development // inferred from electronic annotation /// 0071773 // cellular response to BMP stimulus // inferred from electronic annotation /// 0072001 // renal system development // inferred from electronic annotation /// 0072107 // positive regulation of ureteric bud formation // inferred from sequence or structural similarity /// 0072178 // nephric duct morphogenesis // inferred from sequence or structural similarity /// 0072179 // nephric duct formation // inferred from sequence or structural similarity /// 0072182 // regulation of nephron tubule epithelial cell differentiation // inferred from sequence or structural similarity /// 0072602 // interleukin-4 secretion // inferred from electronic annotation /// 0072643 // interferon-gamma secretion // inferred from electronic annotation /// 0072676 // lymphocyte migration // inferred from direct assay /// 2000114 // regulation of establishment of cell polarity // inferred from electronic annotation /// 2000146 // negative regulation of cell motility // inferred from mutant phenotype /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from mutant phenotype /// 2000607 // negative regulation of cell proliferation involved in mesonephros development // inferred from sequence or structural similarity /// 2000611 // positive regulation of thyroid hormone generation // inferred from mutant phenotype /// 2000664 // positive regulation of interleukin-5 secretion // inferred from direct assay /// 2000667 // positive regulation of interleukin-13 secretion // inferred from direct assay /// 2000667 // positive regulation of interleukin-13 secretion // inferred from mutant phenotype /// 2000679 // positive regulation of transcription regulatory region DNA binding // inferred from mutant phenotype /// 2000683 // regulation of cellular response to X-ray // inferred from mutant phenotype /// 2000703 // negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation // inferred from sequence or structural similarity /// 2000734 // negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation // inferred from sequence or structural similarity 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from direct assay /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0000987 // core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001046 // core promoter sequence-specific DNA binding // inferred from direct assay /// 0001071 // nucleic acid binding transcription factor activity // inferred from direct assay /// 0001071 // nucleic acid binding transcription factor activity // inferred from mutant phenotype /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from mutant phenotype /// 0001158 // enhancer sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005134 // interleukin-2 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from direct assay /// 0071837 // HMG box domain binding // inferred from physical interaction 140.05 216.65 9.47 0.00 0.00 -4.42
41644_at 41644_at AB018333 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB018333:Homo sapiens mRNA for KIAA0790 protein, partial cds /cds=(0,3961) /gb=AB018333 /gi=3882300 /ug=Hs.12002 /len=4469 AB018333 SAM and SH3 domain containing 1 SASH1 23328 NM_015278 /// XM_005266874 /// XM_005266875 /// XM_006715406 0000209 // protein polyubiquitination // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0031666 // positive regulation of lipopolysaccharide-mediated signaling pathway // inferred from mutant phenotype /// 0043507 // positive regulation of JUN kinase activity // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 1900044 // regulation of protein K63-linked ubiquitination // inferred from direct assay /// 1900745 // positive regulation of p38MAPK cascade // inferred from mutant phenotype /// 1901224 // positive regulation of NIK/NF-kappaB signaling // inferred from mutant phenotype /// 1902498 // regulation of protein autoubiquitination // inferred from direct assay 0043234 // protein complex // inferred from mutant phenotype 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from direct assay 130.27 388.81 9.47 0.00 0.00 -4.42
217873_at 217873_at NM_016289 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016289.1 /DEF=Homo sapiens MO25 protein (LOC51719), mRNA. /FEA=mRNA /GEN=LOC51719 /PROD=MO25 protein /DB_XREF=gi:7706480 /UG=Hs.6406 MO25 protein /FL=gb:AF113536.1 gb:NM_016289.1 NM_016289 calcium binding protein 39 CAB39 51719 NM_001130849 /// NM_001130850 /// NM_016289 0007050 // cell cycle arrest // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0023014 // signal transduction by phosphorylation // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0071476 // cellular hypotonic response // inferred by curator /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 1901017 // negative regulation of potassium ion transmembrane transporter activity // inferred by curator /// 1901380 // negative regulation of potassium ion transmembrane transport // inferred by curator /// 2000681 // negative regulation of rubidium ion transport // inferred by curator /// 2000687 // negative regulation of rubidium ion transmembrane transporter activity // inferred by curator 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from physical interaction /// 0030295 // protein kinase activator activity // inferred from direct assay /// 0043539 // protein serine/threonine kinase activator activity // inferred from direct assay -375.12 525.16 -9.44 0.00 0.00 -4.42
218249_at 218249_at NM_022494 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022494.1 /DEF=Homo sapiens hypothetical protein FLJ21952 (FLJ21952), mRNA. /FEA=mRNA /GEN=FLJ21952 /PROD=hypothetical protein FLJ21952 /DB_XREF=gi:11968052 /UG=Hs.22353 hypothetical protein FLJ21952 /FL=gb:NM_022494.1 NM_022494 zinc finger, DHHC-type containing 6 ZDHHC6 64429 NM_022494 /// XM_005270051 /// XM_005270052 /// XM_006717948 /// XM_006717949 0018345 // protein palmitoylation // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019706 // protein-cysteine S-palmitoyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 104.20 189.93 9.44 0.00 0.00 -4.42
203420_at 203420_at NM_016255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016255.1 /DEF=Homo sapiens Autosomal Highly Conserved Protein (AHCP), mRNA. /FEA=mRNA /GEN=AHCP /PROD=Autosomal Highly Conserved Protein /DB_XREF=gi:7705267 /UG=Hs.95260 Autosomal Highly Conserved Protein /FL=gb:AF097027.1 gb:NM_016255.1 NM_016255 family with sequence similarity 8, member A1 FAM8A1 51439 NM_016255 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 120.00 136.40 9.43 0.00 0.00 -4.42
220300_at 220300_at NM_017790 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017790.1 /DEF=Homo sapiens homolog of mouse C2PA (FLJ20370), mRNA. /FEA=mRNA /GEN=FLJ20370 /PROD=homolog of mouse C2PA /DB_XREF=gi:8923347 /UG=Hs.144840 homolog of mouse C2PA /FL=gb:NM_017790.1 NM_017790 regulator of G-protein signaling 3 RGS3 5998 NM_001276260 /// NM_001276261 /// NM_001276262 /// NM_001282922 /// NM_001282923 /// NM_017790 /// NM_130795 /// NM_134427 /// NM_144488 /// NM_144489 /// XM_006717219 /// XM_006717220 /// XM_006717221 /// XM_006717222 /// XM_006717223 /// XM_006717224 /// XM_006717225 /// XM_006717226 /// XM_006717227 /// XM_006717228 /// XM_006717229 /// XM_006717230 0000188 // inactivation of MAPK activity // traceable author statement /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // not recorded /// 0043547 // positive regulation of GTPase activity // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation -76.20 111.33 -9.42 0.00 0.00 -4.42
210538_s_at 210538_s_at U37546 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U37546.1 /DEF=Human IAP homolog C (MIHC) mRNA, complete cds. /FEA=mRNA /GEN=MIHC /PROD=MIHC /DB_XREF=gi:1145290 /UG=Hs.127799 baculoviral IAP repeat-containing 3 /FL=gb:U37546.1 U37546 baculoviral IAP repeat containing 3 BIRC3 330 NM_001165 /// NM_182962 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0034121 // regulation of toll-like receptor signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038061 // NIK/NF-kappaB signaling // traceable author statement /// 0039535 // regulation of RIG-I signaling pathway // traceable author statement /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045088 // regulation of innate immune response // traceable author statement /// 0050727 // regulation of inflammatory response // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0060544 // regulation of necroptotic process // inferred from mutant phenotype /// 0060546 // negative regulation of necroptotic process // inferred from electronic annotation /// 0070266 // necroptotic process // inferred from electronic annotation /// 0070424 // regulation of nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 2000116 // regulation of cysteine-type endopeptidase activity // traceable author statement /// 2000378 // negative regulation of reactive oxygen species metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -112.35 64.15 -9.41 0.00 0.00 -4.42
201491_at 201491_at NM_012111 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012111.1 /DEF=Homo sapiens chromosome 14 open reading frame 3 (C14ORF3), mRNA. /FEA=mRNA /GEN=C14ORF3 /PROD=chromosome 14 open reading frame 3 /DB_XREF=gi:6912279 /UG=Hs.204041 chromosome 14 open reading frame 3 /FL=gb:BC000321.1 gb:NM_012111.1 gb:AF164791.1 NM_012111 AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) AHSA1 10598 NM_012111 0006457 // protein folding // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0032781 // positive regulation of ATPase activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001671 // ATPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from direct assay 173.20 336.75 9.41 0.00 0.00 -4.42
208977_x_at 208977_x_at BC004188 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004188.1 /DEF=Homo sapiens, tubulin, beta, 2, clone MGC:2826, mRNA, complete cds. /FEA=mRNA /PROD=tubulin, beta, 2 /DB_XREF=gi:13278848 /UG=Hs.251653 tubulin, beta, 2 /FL=gb:BC002783.1 gb:BC002885.1 gb:BC001911.1 gb:BC004188.1 gb:NM_006088.1 BC004188 tubulin, beta 4B class IVb TUBB4B 10383 NM_006088 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0042267 // natural killer cell mediated cytotoxicity // non-traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // traceable author statement /// 0051082 // unfolded protein binding // non-traceable author statement 565.02 1229.41 9.38 0.00 0.00 -4.42
203545_at 203545_at NM_024079 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024079.1 /DEF=Homo sapiens hypothetical protein MGC2840 similar to a putative glucosyltransferase (MGC2840), mRNA. /FEA=mRNA /GEN=MGC2840 /PROD=hypothetical protein MGC2840 similar to aputative glucosyltransferase /DB_XREF=gi:13129069 /UG=Hs.155356 hypothetical protein MGC2840 similar to a putative glucosyltransferase /FL=gb:BC001133.1 gb:NM_024079.1 NM_024079 ALG8, alpha-1,3-glucosyltransferase ALG8 79053 NM_001007027 /// NM_001007028 /// NM_024079 /// XM_005274247 /// XR_428923 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // inferred from mutant phenotype /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0097502 // mannosylation // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000033 // alpha-1,3-mannosyltransferase activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 87.60 180.40 9.35 0.00 0.00 -4.42
218723_s_at 218723_s_at NM_014059 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014059.1 /DEF=Homo sapiens RGC32 protein (RGC32), mRNA. /FEA=mRNA /GEN=RGC32 /PROD=RGC32 protein /DB_XREF=gi:7662650 /UG=Hs.76640 RGC32 protein /FL=gb:AF036549.1 gb:NM_014059.1 NM_014059 regulator of cell cycle RGCC 28984 NM_014059 0001100 // negative regulation of exit from mitosis // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0003331 // positive regulation of extracellular matrix constituent secretion // inferred from direct assay /// 0006956 // complement activation // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from mutant phenotype /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0031659 // positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0032967 // positive regulation of collagen biosynthetic process // inferred from direct assay /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0050710 // negative regulation of cytokine secretion // inferred from mutant phenotype /// 0050715 // positive regulation of cytokine secretion // inferred from mutant phenotype /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0071158 // positive regulation of cell cycle arrest // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 0071850 // mitotic cell cycle arrest // inferred from direct assay /// 0072537 // fibroblast activation // inferred from sequence or structural similarity /// 0090272 // negative regulation of fibroblast growth factor production // inferred from direct assay /// 1901313 // positive regulation of gene expression involved in extracellular matrix organization // inferred from direct assay /// 1901991 // negative regulation of mitotic cell cycle phase transition // inferred from direct assay /// 2000048 // negative regulation of cell-cell adhesion mediated by cadherin // inferred from direct assay /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from direct assay /// 2000573 // positive regulation of DNA biosynthetic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0030295 // protein kinase activator activity // inferred from direct assay /// 0070412 // R-SMAD binding // inferred from physical interaction 226.22 304.69 9.33 0.00 0.00 -4.42
201919_at 201919_at AL049246 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049246.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564C053 (from clone DKFZp564C053). /FEA=mRNA /DB_XREF=gi:4499983 /UG=Hs.42484 hypothetical protein FLJ10618 /FL=gb:NM_018155.1 AL049246 solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 SLC25A36 55186 NM_001104647 /// NM_018155 /// XM_005247575 /// XM_006713685 0006810 // transport // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -190.00 355.98 -9.32 0.00 0.00 -4.42
210512_s_at 210512_s_at AF022375 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF022375.1 /DEF=Homo sapiens vascular endothelial growth factor mRNA, complete cds. /FEA=mRNA /PROD=vascular endothelial growth factor /DB_XREF=gi:3719220 /UG=Hs.73793 vascular endothelial growth factor /FL=gb:M32977.1 gb:AF022375.1 gb:NM_003376.1 gb:AB021221.1 gb:AF091352.1 AF022375 vascular endothelial growth factor A VEGFA 7422 NM_001025366 /// NM_001025367 /// NM_001025368 /// NM_001025369 /// NM_001025370 /// NM_001033756 /// NM_001171622 /// NM_001171623 /// NM_001171624 /// NM_001171625 /// NM_001171626 /// NM_001171627 /// NM_001171628 /// NM_001171629 /// NM_001171630 /// NM_001204384 /// NM_001204385 /// NM_001287044 /// NM_003376 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001525 // angiogenesis // inferred from direct assay /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // traceable author statement /// 0001666 // response to hypoxia // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001822 // kidney development // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001944 // vasculature development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0002052 // positive regulation of neuroblast proliferation // inferred from sequence or structural similarity /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0002092 // positive regulation of receptor internalization // inferred from direct assay /// 0002575 // basophil chemotaxis // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0002687 // positive regulation of leukocyte migration // traceable author statement /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003169 // coronary vein morphogenesis // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007498 // mesoderm development // inferred from sequence or structural similarity /// 0007595 // lactation // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008360 // regulation of cell shape // inferred from direct assay /// 0009409 // response to cold // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0016477 // cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from direct assay /// 0030225 // macrophage differentiation // inferred from direct assay /// 0030324 // lung development // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from sequence or structural similarity /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0031077 // post-embryonic camera-type eye development // inferred from sequence or structural similarity /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0032793 // positive regulation of CREB transcription factor activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0035148 // tube formation // inferred from direct assay /// 0035767 // endothelial cell chemotaxis // inferred from direct assay /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from direct assay /// 0036303 // lymph vessel morphogenesis // inferred from sequence or structural similarity /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from direct assay /// 0038091 // positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway // inferred from direct assay /// 0038190 // VEGF-activated neuropilin signaling pathway // inferred from sequence or structural similarity /// 0040007 // growth // inferred from sequence or structural similarity /// 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043069 // negative regulation of programmed cell death // inferred from electronic annotation /// 0043117 // positive regulation of vascular permeability // inferred from direct assay /// 0043129 // surfactant homeostasis // inferred from sequence or structural similarity /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0048255 // mRNA stabilization // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048469 // cell maturation // inferred from sequence or structural similarity /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from sequence or structural similarity /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // inferred from sequence or structural similarity /// 0048754 // branching morphogenesis of an epithelial tube // inferred from sequence or structural similarity /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0050679 // positive regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from direct assay /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // non-traceable author statement /// 0051272 // positive regulation of cellular component movement // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0060319 // primitive erythrocyte differentiation // inferred from sequence or structural similarity /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from sequence or structural similarity /// 0060754 // positive regulation of mast cell chemotaxis // inferred from direct assay /// 0060948 // cardiac vascular smooth muscle cell development // inferred from sequence or structural similarity /// 0060982 // coronary artery morphogenesis // inferred from sequence or structural similarity /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0061419 // positive regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement /// 0071542 // dopaminergic neuron differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 0090037 // positive regulation of protein kinase C signaling // inferred from direct assay /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0090259 // regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1900086 // positive regulation of peptidyl-tyrosine autophosphorylation // inferred from direct assay /// 1900745 // positive regulation of p38MAPK cascade // inferred from direct assay /// 1901492 // positive regulation of lymphangiogenesis // inferred from electronic annotation /// 1901727 // positive regulation of histone deacetylase activity // inferred from direct assay /// 1902336 // positive regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1902533 // positive regulation of intracellular signal transduction // inferred from direct assay /// 1902966 // positive regulation of protein localization to early endosome // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation 0001968 // fibronectin binding // inferred from direct assay /// 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005172 // vascular endothelial growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // inferred from mutant phenotype /// 0038191 // neuropilin binding // inferred from physical interaction /// 0042056 // chemoattractant activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043183 // vascular endothelial growth factor receptor 1 binding // inferred from physical interaction /// 0043184 // vascular endothelial growth factor receptor 2 binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048018 // receptor agonist activity // inferred from physical interaction /// 0050840 // extracellular matrix binding // inferred by curator -302.50 175.85 -9.30 0.00 0.00 -4.42
221786_at 221786_at BF197222 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF197222 /FEA=EST /DB_XREF=gi:11085906 /DB_XREF=est:7m88b07.x1 /CLONE=IMAGE:3561949 /UG=Hs.12342 Homo sapiens clone 24538 mRNA sequence BF197222 chromosome 6 open reading frame 120 C6orf120 387263 NM_001029863 0006915 // apoptotic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 99.20 118.83 9.29 0.00 0.00 -4.42
211559_s_at 211559_s_at L49506 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L49506.1 /DEF=Homo sapiens cyclin G2 mRNA, complete cds. /FEA=mRNA /PROD=cyclin G2 /DB_XREF=gi:1236234 /UG=Hs.79069 cyclin G2 /FL=gb:L49506.1 L49506 cyclin G2 CCNG2 901 NM_004354 0000075 // cell cycle checkpoint // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation -164.02 145.21 -9.29 0.00 0.00 -4.42
210616_s_at 210616_s_at AB020712 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB020712.1 /DEF=Homo sapiens mRNA for KIAA0905 protein, complete cds. /FEA=mRNA /GEN=KIAA0905 /PROD=KIAA0905 protein /DB_XREF=gi:4240298 /UG=Hs.70266 yeast Sec31p homolog /FL=gb:AB020712.1 AB020712 SEC31 homolog A (S. cerevisiae) SEC31A 22872 NM_001077206 /// NM_001077207 /// NM_001077208 /// NM_001191049 /// NM_014933 /// NM_016211 /// XM_005262847 /// XM_005262849 /// XM_005262850 /// XM_005262851 /// XM_005262852 /// XM_005262854 /// XM_006714141 /// XM_006714142 /// XM_006714143 /// XM_006714144 /// XM_006714145 /// XM_006714146 /// XM_006714147 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // non-traceable author statement /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0051592 // response to calcium ion // inferred from direct assay /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030120 // vesicle coat // inferred from direct assay /// 0030127 // COPII vesicle coat // non-traceable author statement /// 0030134 // ER to Golgi transport vesicle // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 107.75 533.73 9.28 0.00 0.00 -4.42
204298_s_at 204298_s_at NM_002317 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002317.1 /DEF=Homo sapiens lysyl oxidase (LOX), mRNA. /FEA=mRNA /GEN=LOX /PROD=lysyl oxidase /DB_XREF=gi:4505008 /UG=Hs.102267 lysyl oxidase /FL=gb:M94054.1 gb:AF039291.1 gb:NM_002317.1 NM_002317 lysyl oxidase LOX 4015 NM_001178102 /// NM_002317 0001568 // blood vessel development // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0048251 // elastic fiber assembly // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0004720 // protein-lysine 6-oxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -208.60 228.62 -9.27 0.00 0.00 -4.42
220450_at 220450_at NM_024914 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024914.1 /DEF=Homo sapiens hypothetical protein FLJ13262 (FLJ13262), mRNA. /FEA=mRNA /GEN=FLJ13262 /PROD=hypothetical protein FLJ13262 /DB_XREF=gi:13376379 /UG=Hs.255858 hypothetical protein FLJ13262 /FL=gb:NM_024914.1 NM_024914 87.67 71.51 9.23 0.00 0.00 -4.42
200958_s_at 200958_s_at NM_005625 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005625.1 /DEF=Homo sapiens syndecan binding protein (syntenin) (SDCBP), mRNA. /FEA=mRNA /GEN=SDCBP /PROD=syndecan binding protein (syntenin) /DB_XREF=gi:5032082 /UG=Hs.8180 syndecan binding protein (syntenin) /FL=gb:AF000652.1 gb:NM_005625.1 NM_005625 syndecan binding protein (syntenin) SDCBP 6386 NM_001007067 /// NM_001007068 /// NM_001007069 /// NM_001007070 /// NM_005625 /// XM_005251280 0006612 // protein targeting to membrane // non-traceable author statement /// 0006930 // substrate-dependent cell migration, cell extension // non-traceable author statement /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007268 // synaptic transmission // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0030036 // actin cytoskeleton organization // non-traceable author statement /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0046330 // positive regulation of JNK cascade // inferred by curator 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005895 // interleukin-5 receptor complex // inferred from sequence or structural similarity /// 0005912 // adherens junction // non-traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0001948 // glycoprotein binding // inferred from electronic annotation /// 0005109 // frizzled binding // inferred from physical interaction /// 0005137 // interleukin-5 receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // non-traceable author statement /// 0019838 // growth factor binding // inferred from electronic annotation /// 0042043 // neurexin family protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0045545 // syndecan binding // inferred from physical interaction /// 0045545 // syndecan binding // non-traceable author statement /// 0046875 // ephrin receptor binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation -595.70 1400.12 -9.23 0.00 0.00 -4.42
214175_x_at 214175_x_at AI254547 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI254547 /FEA=EST /DB_XREF=gi:3862072 /DB_XREF=est:qv48h06.x1 /CLONE=IMAGE:1984859 /UG=Hs.79691 LIM domain protein AI254547 PDZ and LIM domain 4 PDLIM4 8572 NM_001131027 /// NM_003687 /// XM_006714723 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -187.05 275.62 -9.20 0.00 0.00 -4.42
200754_x_at 200754_x_at NM_003016 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003016.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 2 (SFRS2), mRNA. /FEA=mRNA /GEN=SFRS2 /PROD=splicing factor, arginineserine-rich 2 /DB_XREF=gi:4506898 /UG=Hs.73965 splicing factor, arginineserine-rich 2 /FL=gb:BC000339.1 gb:BC001303.1 gb:M90104.1 gb:NM_003016.1 NM_003016 microRNA 636 /// serine/arginine-rich splicing factor 2 MIR636 /// SRSF2 6427 /// 693221 NM_001195427 /// NM_003016 /// NR_030366 /// NR_036608 /// XR_429913 /// XR_429914 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 2001141 // regulation of RNA biosynthetic process // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016605 // PML body // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 539.27 1251.46 9.19 0.00 0.00 -4.42
218066_at 218066_at NM_006598 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006598.1 /DEF=Homo sapiens solute carrier family 12 (potassiumchloride transporters), member 7 (SLC12A7), mRNA. /FEA=mRNA /GEN=SLC12A7 /PROD=solute carrier family 12 (potassiumchloridetransporters), member 7 /DB_XREF=gi:5730042 /UG=Hs.172613 solute carrier family 12 (potassiumchloride transporters), member 7 /FL=gb:AF105365.1 gb:NM_006598.1 NM_006598 solute carrier family 12 (potassium/chloride transporter), member 7 SLC12A7 10723 NM_006598 /// XM_005248231 /// XM_006725006 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // traceable author statement /// 0006884 // cell volume homeostasis // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 1902476 // chloride transmembrane transport // inferred from electronic annotation /// 1902476 // chloride transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015293 // symporter activity // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation /// 0015379 // potassium:chloride symporter activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction -242.65 361.82 -9.18 0.00 0.00 -4.42
200748_s_at 200748_s_at NM_002032 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002032.1 /DEF=Homo sapiens ferritin, heavy polypeptide 1 (FTH1), mRNA. /FEA=mRNA /GEN=FTH1 /PROD=ferritin, heavy polypeptide 1 /DB_XREF=gi:4503794 /UG=Hs.62954 ferritin, heavy polypeptide 1 /FL=gb:BC000857.1 gb:BC001399.1 gb:M11146.1 gb:M12937.1 gb:M97164.1 gb:NM_002032.1 gb:L20941.1 NM_002032 ferritin, heavy polypeptide 1 FTH1 2495 NM_002032 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006880 // intracellular sequestering of iron ion // inferred from direct assay /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006955 // immune response // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0048147 // negative regulation of fibroblast proliferation // inferred from direct assay /// 0055085 // transmembrane transport // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0008043 // intracellular ferritin complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004322 // ferroxidase activity // inferred from electronic annotation /// 0005506 // iron ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation -2106.23 2540.96 -9.17 0.00 0.00 -4.42
200945_s_at 200945_s_at NM_014933 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014933.1 /DEF=Homo sapiens yeast Sec31p homolog (KIAA0905), mRNA. /FEA=mRNA /GEN=KIAA0905 /PROD=yeast Sec31p homolog /DB_XREF=gi:7662369 /UG=Hs.70266 yeast Sec31p homolog /FL=gb:AB018359.1 gb:NM_014933.1 gb:AF139184.1 NM_014933 SEC31 homolog A (S. cerevisiae) SEC31A 22872 NM_001077206 /// NM_001077207 /// NM_001077208 /// NM_001191049 /// NM_014933 /// NM_016211 /// XM_005262847 /// XM_005262849 /// XM_005262850 /// XM_005262851 /// XM_005262852 /// XM_005262854 /// XM_006714141 /// XM_006714142 /// XM_006714143 /// XM_006714144 /// XM_006714145 /// XM_006714146 /// XM_006714147 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // non-traceable author statement /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0051592 // response to calcium ion // inferred from direct assay /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030120 // vesicle coat // inferred from direct assay /// 0030127 // COPII vesicle coat // non-traceable author statement /// 0030134 // ER to Golgi transport vesicle // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 233.03 966.49 9.16 0.00 0.00 -4.42
219449_s_at 219449_s_at NM_017866 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017866.1 /DEF=Homo sapiens hypothetical protein FLJ20533 (FLJ20533), mRNA. /FEA=mRNA /GEN=FLJ20533 /PROD=hypothetical protein FLJ20533 /DB_XREF=gi:8923499 /UG=Hs.106650 hypothetical protein FLJ20533 /FL=gb:BC002748.1 gb:NM_017866.1 NM_017866 transmembrane protein 70 TMEM70 54968 NM_001040613 /// NM_017866 /// NR_033334 0033615 // mitochondrial proton-transporting ATP synthase complex assembly // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032592 // integral component of mitochondrial membrane // inferred from direct assay 119.50 201.93 9.14 0.00 0.00 -4.42
202540_s_at 202540_s_at NM_000859 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000859.1 /DEF=Homo sapiens 3-hydroxy-3-methylglutaryl-Coenzyme A reductase (HMGCR), mRNA. /FEA=mRNA /GEN=HMGCR /PROD=3-hydroxy-3-methylglutaryl-Coenzyme A reductase /DB_XREF=gi:4557642 /UG=Hs.11899 3-hydroxy-3-methylglutaryl-Coenzyme A reductase /FL=gb:M11058.1 gb:NM_000859.1 NM_000859 3-hydroxy-3-methylglutaryl-CoA reductase HMGCR 3156 NM_000859 /// NM_001130996 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006743 // ubiquinone metabolic process // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0010664 // negative regulation of striated muscle cell apoptotic process // inferred from electronic annotation /// 0010666 // positive regulation of cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0015936 // coenzyme A metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045908 // negative regulation of vasodilation // inferred from electronic annotation /// 0048643 // positive regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0051262 // protein tetramerization // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061045 // negative regulation of wound healing // inferred from electronic annotation /// 0061179 // negative regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation 0005778 // peroxisomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004420 // hydroxymethylglutaryl-CoA reductase (NADPH) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008158 // hedgehog receptor activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042282 // hydroxymethylglutaryl-CoA reductase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from direct assay /// 0070402 // NADPH binding // inferred from direct assay 86.05 65.78 9.12 0.00 0.00 -4.42
218646_at 218646_at NM_017867 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017867.1 /DEF=Homo sapiens hypothetical protein FLJ20534 (FLJ20534), mRNA. /FEA=mRNA /GEN=FLJ20534 /PROD=hypothetical protein FLJ20534 /DB_XREF=gi:8923502 /UG=Hs.44344 hypothetical protein FLJ20534 /FL=gb:AL136673.1 gb:NM_017867.1 NM_017867 chromosome 4 open reading frame 27 C4orf27 54969 NM_017867 0005634 // nucleus // inferred from direct assay 101.18 162.54 9.11 0.00 0.00 -4.42
203640_at 203640_at BE328496 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE328496 /FEA=EST /DB_XREF=gi:9202272 /DB_XREF=est:hs98f09.x1 /CLONE=IMAGE:3145289 /UG=Hs.283609 hypothetical protein PRO2032 /FL=gb:AF116683.1 gb:NM_018615.1 BE328496 muscleblind-like splicing regulator 2 MBNL2 10150 NM_144778 /// NM_207304 /// XM_005254018 /// XM_005254019 /// XM_005254020 /// XM_005254021 /// XM_005254022 /// XM_006719912 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -397.97 442.79 -9.11 0.00 0.00 -4.42
221577_x_at 221577_x_at AF003934 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF003934.1 /DEF=Homo sapiens prostate differentiation factor mRNA, complete cds. /FEA=mRNA /PROD=prostate differentiation factor /DB_XREF=gi:2290971 /UG=Hs.296638 prostate differentiation factor /FL=gb:BC000529.1 gb:AB000584.1 gb:U88323.1 gb:AF003934.1 gb:AF019770.1 gb:NM_004864.1 AF003934 growth differentiation factor 15 GDF15 9518 NM_004864 0007165 // signal transduction // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation -787.70 835.95 -9.10 0.00 0.00 -4.42
202200_s_at 202200_s_at NM_003137 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003137.1 /DEF=Homo sapiens SFRS protein kinase 1 (SRPK1), mRNA. /FEA=mRNA /GEN=SRPK1 /PROD=SFRS protein kinase 1 /DB_XREF=gi:4507218 /UG=Hs.75761 SFRS protein kinase 1 /FL=gb:NM_003137.1 gb:U09564.1 NM_003137 SRSF protein kinase 1 SRPK1 6732 NM_003137 /// NR_034069 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007059 // chromosome segregation // inferred from direct assay /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035092 // sperm chromatin condensation // traceable author statement /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0045070 // positive regulation of viral genome replication // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045087 // innate immune response // inferred by curator /// 0048024 // regulation of mRNA splicing, via spliceosome // traceable author statement /// 0050684 // regulation of mRNA processing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 110.00 200.35 9.08 0.00 0.00 -4.42
201250_s_at 201250_s_at NM_006516 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006516.1 /DEF=Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 1 (SLC2A1), mRNA. /FEA=mRNA /GEN=SLC2A1 /PROD=solute carrier family 2 (facilitated glucosetransporter), member 1 /DB_XREF=gi:5730050 /UG=Hs.169902 solute carrier family 2 (facilitated glucose transporter), member 1 /FL=gb:K03195.1 gb:NM_006516.1 NM_006516 solute carrier family 2 (facilitated glucose transporter), member 1 SLC2A1 6513 NM_006516 0005975 // carbohydrate metabolic process // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006461 // protein complex assembly // inferred from direct assay /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0019852 // L-ascorbic acid metabolic process // traceable author statement /// 0042149 // cellular response to glucose starvation // inferred from electronic annotation /// 0042908 // xenobiotic transport // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0070837 // dehydroascorbic acid transport // inferred from electronic annotation 0001939 // female pronucleus // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0031982 // vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation /// 0033300 // dehydroascorbic acid transporter activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042910 // xenobiotic transporter activity // inferred from electronic annotation /// 0043621 // protein self-association // inferred from direct assay /// 0055056 // D-glucose transmembrane transporter activity // inferred from electronic annotation -226.42 301.49 -9.07 0.00 0.00 -4.42
209501_at 209501_at AL582414 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL582414 /FEA=EST /DB_XREF=gi:12950373 /DB_XREF=est:AL582414 /CLONE=CS0DL001YM17 (3 prime) /UG=Hs.75124 cerebellar degeneration-related protein (62kD) /FL=gb:D12981.1 AL582414 cerebellar degeneration-related protein 2, 62kDa /// cerebellar degeneration-related protein 2-like CDR2 /// LOC101060399 1039 /// 101060399 NM_001802 /// XM_005276502 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 115.85 225.82 9.06 0.00 0.00 -4.42
209101_at 209101_at M92934 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M92934.1 /DEF=Human connective tissue growth factor, complete cds. /FEA=mRNA /PROD=connective tissue growth factor /DB_XREF=gi:180923 /UG=Hs.75511 connective tissue growth factor /FL=gb:M92934.1 gb:NM_001901.1 M92934 connective tissue growth factor CTGF 1490 NM_001901 0001502 // cartilage condensation // inferred from electronic annotation /// 0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008544 // epidermis development // traceable author statement /// 0009611 // response to wounding // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0010260 // organ senescence // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0034059 // response to anoxia // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0035988 // chondrocyte proliferation // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045597 // positive regulation of cell differentiation // inferred from direct assay /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0050867 // positive regulation of cell activation // inferred from electronic annotation /// 0051385 // response to mineralocorticoid // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay /// 0060401 // cytosolic calcium ion transport // inferred from electronic annotation /// 0060452 // positive regulation of cardiac muscle contraction // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0070278 // extracellular matrix constituent secretion // inferred from electronic annotation /// 0070318 // positive regulation of G0 to G1 transition // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070542 // response to fatty acid // inferred from electronic annotation /// 0072593 // reactive oxygen species metabolic process // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0001968 // fibronectin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation 1079.40 2803.30 9.04 0.00 0.00 -4.42
203432_at 203432_at AW272611 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW272611 /FEA=EST /DB_XREF=gi:6659725 /DB_XREF=est:xu22h03.x1 /CLONE=IMAGE:2800949 /UG=Hs.11355 thymopoietin /FL=gb:NM_003276.1 gb:U09086.1 AW272611 thymopoietin TMPO 7112 NM_001032283 /// NM_001032284 /// NM_003276 /// XM_005269130 /// XM_005269132 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005635 // nuclear envelope // traceable author statement /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005521 // lamin binding // traceable author statement 128.48 120.51 9.03 0.00 0.00 -4.42
208813_at 208813_at BC000498 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000498.1 /DEF=Homo sapiens, glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1), clone MGC:8411, mRNA, complete cds. /FEA=mRNA /PROD=glutamic-oxaloacetic transaminase 1, soluble(aspartate aminotransferase 1) /DB_XREF=gi:12653452 /UG=Hs.597 glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) /FL=gb:BC000498.1 gb:M37400.1 gb:NM_002079.1 BC000498 glutamic-oxaloacetic transaminase 1, soluble GOT1 2805 NM_002079 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006114 // glycerol biosynthetic process // inferred from sequence or structural similarity /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006531 // aspartate metabolic process // inferred from sequence or structural similarity /// 0006532 // aspartate biosynthetic process // inferred from electronic annotation /// 0006533 // aspartate catabolic process // inferred from direct assay /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0006595 // polyamine metabolic process // traceable author statement /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0019509 // L-methionine salvage from methylthioadenosine // traceable author statement /// 0019550 // glutamate catabolic process to aspartate // inferred from electronic annotation /// 0019551 // glutamate catabolic process to 2-oxoglutarate // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043648 // dicarboxylic acid metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051384 // response to glucocorticoid // inferred from expression pattern /// 0055089 // fatty acid homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043679 // axon terminus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from direct assay /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from sequence or structural similarity /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // traceable author statement /// 0004609 // phosphatidylserine decarboxylase activity // inferred from electronic annotation /// 0008483 // transaminase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from electronic annotation /// 0047801 // L-cysteine:2-oxoglutarate aminotransferase activity // inferred from sequence or structural similarity /// 0080130 // L-phenylalanine:2-oxoglutarate aminotransferase activity // inferred from electronic annotation -118.27 152.31 -9.02 0.00 0.00 -4.42
205207_at 205207_at NM_000600 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000600.1 /DEF=Homo sapiens interleukin 6 (interferon, beta 2) (IL6), mRNA. /FEA=mRNA /GEN=IL6 /PROD=interleukin 6 (interferon, beta 2) /DB_XREF=gi:10834983 /UG=Hs.93913 interleukin 6 (interferon, beta 2) /FL=gb:NM_000600.1 gb:M14584.1 gb:M18403.1 gb:M29150.1 gb:M54894.1 NM_000600 interleukin 6 IL6 3569 NM_000600 /// XM_005249745 0001781 // neutrophil apoptotic process // inferred from direct assay /// 0002384 // hepatic immune response // inferred from direct assay /// 0002384 // hepatic immune response // traceable author statement /// 0002446 // neutrophil mediated immunity // inferred by curator /// 0002548 // monocyte chemotaxis // inferred by curator /// 0002675 // positive regulation of acute inflammatory response // inferred from direct assay /// 0002690 // positive regulation of leukocyte chemotaxis // inferred by curator /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006953 // acute-phase response // traceable author statement /// 0006954 // inflammatory response // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0006959 // humoral immune response // inferred by curator /// 0007568 // aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0010574 // regulation of vascular endothelial growth factor production // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010888 // negative regulation of lipid storage // non-traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016049 // cell growth // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0031000 // response to caffeine // inferred from electronic annotation /// 0031018 // endocrine pancreas development // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032494 // response to peptidoglycan // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // inferred from direct assay /// 0032722 // positive regulation of chemokine production // inferred from mutant phenotype /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0032868 // response to insulin // inferred from electronic annotation /// 0032966 // negative regulation of collagen biosynthetic process // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042110 // T cell activation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from direct assay /// 0042832 // defense response to protozoan // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043410 // positive regulation of MAPK cascade // inferred from direct assay /// 0045079 // negative regulation of chemokine biosynthetic process // inferred from sequence or structural similarity /// 0045188 // regulation of circadian sleep/wake cycle, non-REM sleep // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // non-traceable author statement /// 0045630 // positive regulation of T-helper 2 cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // traceable author statement /// 0045721 // negative regulation of gluconeogenesis // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // inferred by curator /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046427 // positive regulation of JAK-STAT cascade // inferred from direct assay /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046716 // muscle cell cellular homeostasis // inferred from electronic annotation /// 0046849 // bone remodeling // inferred from electronic annotation /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0048635 // negative regulation of muscle organ development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050710 // negative regulation of cytokine secretion // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050829 // defense response to Gram-negative bacterium // inferred from expression pattern /// 0050830 // defense response to Gram-positive bacterium // inferred from expression pattern /// 0050871 // positive regulation of B cell activation // inferred from direct assay /// 0051024 // positive regulation of immunoglobulin secretion // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051384 // response to glucocorticoid // inferred from direct assay /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0051971 // positive regulation of transmission of nerve impulse // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0070091 // glucagon secretion // inferred from sequence or structural similarity /// 0070102 // interleukin-6-mediated signaling pathway // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype /// 0072540 // T-helper 17 cell lineage commitment // inferred from sequence or structural similarity /// 1901215 // negative regulation of neuron death // inferred from electronic annotation /// 2000366 // positive regulation of STAT protein import into nucleus // inferred by curator /// 2000676 // positive regulation of type B pancreatic cell apoptotic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005896 // interleukin-6 receptor complex // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // non-traceable author statement /// 0005138 // interleukin-6 receptor binding // inferred from physical interaction /// 0005138 // interleukin-6 receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay -1309.88 738.66 -9.01 0.00 0.00 -4.42
205133_s_at 205133_s_at NM_002157 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002157.1 /DEF=Homo sapiens heat shock 10kD protein 1 (chaperonin 10) (HSPE1), mRNA. /FEA=mRNA /GEN=HSPE1 /PROD=heat shock 10kD protein 1 (chaperonin 10) /DB_XREF=gi:4504522 /UG=Hs.1197 heat shock 10kD protein 1 (chaperonin 10) /FL=gb:NM_002157.1 gb:U07550.1 NM_002157 heat shock 10kDa protein 1 HSPE1 3336 NM_002157 0001649 // osteoblast differentiation // inferred from direct assay /// 0006457 // protein folding // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // non-traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // non-traceable author statement /// 0051087 // chaperone binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from sequence or structural similarity 305.37 407.91 9.00 0.00 0.00 -4.42
202237_at 202237_at NM_006169 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006169.1 /DEF=Homo sapiens nicotinamide N-methyltransferase (NNMT), mRNA. /FEA=mRNA /GEN=NNMT /PROD=nicotinamide N-methyltransferase /DB_XREF=gi:5453789 /UG=Hs.76669 nicotinamide N-methyltransferase /FL=gb:BC000234.1 gb:U08021.1 gb:NM_006169.1 NM_006169 uncharacterized LOC101928916 /// nicotinamide N-methyltransferase LOC101928916 /// NNMT 4837 /// 101928916 NM_006169 /// XR_246479 /// XR_247717 /// XR_252975 0006805 // xenobiotic metabolic process // traceable author statement /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032259 // methylation // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0008112 // nicotinamide N-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -533.72 720.81 -9.00 0.00 0.00 -4.42
212714_at 212714_at AL050205 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050205.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586F1323 (from clone DKFZp586F1323). /FEA=mRNA /DB_XREF=gi:4884444 /UG=Hs.26613 Homo sapiens mRNA; cDNA DKFZp586F1323 (from clone DKFZp586F1323) AL050205 La ribonucleoprotein domain family, member 4 LARP4 113251 NM_001170803 /// NM_001170804 /// NM_001170808 /// NM_052879 /// NM_199188 /// NM_199190 /// NR_033200 /// XM_005268613 /// XM_006719215 /// XM_006719216 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype 0016020 // membrane // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 134.60 168.88 9.00 0.00 0.00 -4.42
202364_at 202364_at NM_005962 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005962.1 /DEF=Homo sapiens MAX-interacting protein 1 (MXI1), mRNA. /FEA=mRNA /GEN=MXI1 /PROD=MAX-interacting protein 1 /DB_XREF=gi:5174596 /UG=Hs.118630 MAX-interacting protein 1 /FL=gb:L07648.1 gb:NM_005962.1 gb:D63940.1 NM_005962 MAX interactor 1, dimerization protein MXI1 4601 NM_001008541 /// NM_005962 /// NM_130439 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0042994 // cytoplasmic sequestering of transcription factor // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation -211.52 189.94 -8.99 0.00 0.00 -4.42
219260_s_at 219260_s_at NM_015362 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015362.1 /DEF=Homo sapiens HSPC002 protein (HSPC002), mRNA. /FEA=mRNA /GEN=HSPC002 /PROD=HSPC002 protein /DB_XREF=gi:7661725 /UG=Hs.76907 HSPC002 protein /FL=gb:AF070658.1 gb:NM_015362.1 NM_015362 elongator acetyltransferase complex subunit 5 ELP5 23587 NM_015362 /// NM_203413 /// NM_203414 /// NM_203415 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0033588 // Elongator holoenzyme complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 89.30 141.43 8.99 0.00 0.00 -4.42
203068_at 203068_at NM_014851 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014851.1 /DEF=Homo sapiens KIAA0469 gene product (KIAA0469), mRNA. /FEA=mRNA /GEN=KIAA0469 /PROD=KIAA0469 gene product /DB_XREF=gi:7662139 /UG=Hs.7764 KIAA0469 gene product /FL=gb:AB007938.1 gb:NM_014851.1 NM_014851 kelch-like family member 21 KLHL21 9903 NM_014851 /// XM_005263542 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0035853 // chromosome passenger complex localization to spindle midzone // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005827 // polar microtubule // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation -87.88 59.19 -8.98 0.00 0.00 -4.42
213604_at 213604_at AW451236 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW451236 /FEA=EST /DB_XREF=gi:6992012 /DB_XREF=est:UI-H-BI3-alh-a-07-0-UI.s1 /CLONE=IMAGE:2736661 /UG=Hs.15535 Homo sapiens clone 24582 mRNA sequence AW451236 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) TCEB3 6924 NM_003198 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 125.50 191.15 8.98 0.00 0.00 -4.42
213682_at 213682_at AL036344 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL036344 /FEA=EST /DB_XREF=gi:5927743 /DB_XREF=est:DKFZp564A053_r1 /CLONE=DKFZp564A053 /UG=Hs.169329 DKFZP564A043 protein AL036344 nucleoporin 50kDa NUP50 10762 NM_007172 /// NM_153645 /// XM_005261312 /// XM_005261313 /// XM_005261314 /// XM_006724103 /// XM_006724104 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046907 // intracellular transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 90.55 208.42 8.98 0.00 0.00 -4.42
200931_s_at 200931_s_at NM_014000 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014000.1 /DEF=Homo sapiens vinculin (VCL), transcript variant meta-VCL, mRNA. /FEA=mRNA /GEN=VCL /PROD=VCL isoform meta-VCL /DB_XREF=gi:7669549 /UG=Hs.75350 vinculin /FL=gb:NM_014000.1 NM_014000 vinculin VCL 7414 NM_003373 /// NM_014000 /// XM_005270142 /// XM_005270143 0002009 // morphogenesis of an epithelium // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007160 // cell-matrix adhesion // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030032 // lamellipodium assembly // inferred from sequence or structural similarity /// 0030168 // platelet activation // traceable author statement /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // traceable author statement /// 0034333 // adherens junction assembly // inferred from mutant phenotype /// 0034394 // protein localization to cell surface // inferred from mutant phenotype /// 0043297 // apical junction assembly // inferred from mutant phenotype /// 0090136 // epithelial cell-cell adhesion // inferred from mutant phenotype 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0005912 // adherens junction // inferred from sequence or structural similarity /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0014704 // intercalated disc // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030055 // cell-substrate junction // non-traceable author statement /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043034 // costamere // inferred from direct assay /// 0043034 // costamere // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002162 // dystroglycan binding // inferred from physical interaction /// 0003779 // actin binding // inferred from direct assay /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from sequence or structural similarity /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from sequence or structural similarity 558.00 1366.60 8.97 0.00 0.00 -4.42
201329_s_at 201329_s_at NM_005239 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005239.1 /DEF=Homo sapiens v-ets avian erythroblastosis virus E26 oncogene homolog 2 (ETS2), mRNA. /FEA=mRNA /GEN=ETS2 /PROD=v-ets avian erythroblastosis virus E26 oncogenehomolog 2 /DB_XREF=gi:4885220 /UG=Hs.85146 v-ets avian erythroblastosis virus E26 oncogene homolog 2 /FL=gb:J04102.1 gb:NM_005239.1 NM_005239 v-ets avian erythroblastosis virus E26 oncogene homolog 2 ETS2 2114 NM_001256295 /// NM_005239 /// XM_005260935 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001501 // skeletal system development // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -134.53 191.59 -8.96 0.00 0.00 -4.42
210111_s_at 210111_s_at AF277175 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF277175.1 /DEF=Homo sapiens PNAS-138 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-138 /DB_XREF=gi:12751080 /UG=Hs.326790 Homo sapiens PNAS-138 mRNA, complete cds /FL=gb:AF277175.1 AF277175 kelch domain containing 10 KLHDC10 23008 NM_014997 /// XM_005250233 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 112.47 139.66 8.95 0.00 0.00 -4.42
206874_s_at 206874_s_at AL138761 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL138761 /DEF=Human DNA sequence from clone RP11-16H23 on chromosome 10. Contains the gene KIAA0204 (HSLK) for a protein kinase, the COL17A1 gene for collagen type XVII alpha 1 (BP180), ESTs and GSSs /FEA=mRNA_2 /DB_XREF=gi:8573811 /UG=Hs.105751 Ste20-related serinethreonine kinase /FL=gb:D86959.1 gb:NM_014720.1 AL138761 STE20-like kinase SLK 9748 NM_014720 /// XM_005270301 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay 84.77 91.71 8.93 0.00 0.00 -4.42
201032_at 201032_at NM_006698 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006698.1 /DEF=Homo sapiens bladder cancer associated protein (BLCAP), mRNA. /FEA=mRNA /GEN=BLCAP /PROD=bladder cancer associated protein /DB_XREF=gi:5729737 /UG=Hs.5300 bladder cancer associated protein /FL=gb:AF053470.1 gb:NM_006698.1 NM_006698 bladder cancer associated protein BLCAP 10904 NM_001167820 /// NM_001167821 /// NM_001167822 /// NM_001167823 /// NM_006698 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0030262 // apoptotic nuclear changes // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 198.53 252.19 8.92 0.00 0.00 -4.42
213019_at 213019_at AI123233 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI123233 /FEA=EST /DB_XREF=gi:3538999 /DB_XREF=est:qa47e04.x1 /CLONE=IMAGE:1689918 /UG=Hs.167496 RAN binding protein 6 AI123233 RAN binding protein 6 RANBP6 26953 NM_001243202 /// NM_001243203 /// NM_012416 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 83.55 86.35 8.92 0.00 0.00 -4.42
212070_at 212070_at AL554008 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL554008 /FEA=EST /DB_XREF=gi:12894377 /DB_XREF=est:AL554008 /CLONE=CS0DI079YN13 (5 prime) /UG=Hs.6527 G protein-coupled receptor 56 AL554008 G protein-coupled receptor 56 GPR56 9289 NM_001145770 /// NM_001145771 /// NM_001145772 /// NM_001145773 /// NM_001145774 /// NM_001290142 /// NM_001290143 /// NM_001290144 /// NM_005682 /// NM_201524 /// NM_201525 /// XM_005256237 /// XM_005256238 /// XM_005256239 /// XM_005256240 /// XM_005256241 /// XM_005256242 /// XM_005256243 /// XM_005256244 /// XM_005256245 /// XM_005256246 /// XM_005256247 /// XM_005256248 /// XM_005256249 /// XM_005256251 /// XM_005256252 /// XM_005256253 /// XM_005256254 /// XM_005256255 /// XM_006721338 /// XM_006721339 /// XM_006721340 /// XM_006721341 /// XM_006721342 /// XM_006721343 /// XM_006721344 /// XM_006721345 /// XM_006721346 /// XM_006721347 0001525 // angiogenesis // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from direct assay /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010573 // vascular endothelial growth factor production // inferred from direct assay /// 0021801 // cerebral cortex radial glia guided migration // inferred from sequence or structural similarity /// 0021819 // layer formation in cerebral cortex // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035025 // positive regulation of Rho protein signal transduction // inferred from sequence or structural similarity /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0070528 // protein kinase C signaling // inferred from direct assay /// 2001223 // negative regulation of neuron migration // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097451 // glial limiting end-foot // inferred from sequence or structural similarity 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0005518 // collagen binding // inferred from sequence or structural similarity /// 0050840 // extracellular matrix binding // inferred from sequence or structural similarity -186.27 370.71 -8.91 0.00 0.00 -4.42
209017_s_at 209017_s_at U02389 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U02389.1 /DEF=Human hLON ATP-dependent protease mRNA, nuclear gene encoding mitochondrial protein, complete cds. /FEA=mRNA /PROD=hLON ATP-dependent protease /DB_XREF=gi:639426 /UG=Hs.278614 protease, serine, 15 /FL=gb:BC000235.1 gb:NM_004793.1 gb:U02389.1 U02389 lon peptidase 1, mitochondrial LONP1 9361 NM_001276479 /// NM_001276480 /// NM_004793 /// NR_076392 0000002 // mitochondrial genome maintenance // non-traceable author statement /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006515 // misfolded or incompletely synthesized protein catabolic process // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0007568 // aging // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0010044 // response to aluminum ion // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0032042 // mitochondrial DNA metabolic process // non-traceable author statement /// 0034599 // cellular response to oxidative stress // inferred by curator /// 0034599 // cellular response to oxidative stress // inferred from direct assay /// 0043623 // cellular protein complex assembly // inferred from electronic annotation /// 0051131 // chaperone-mediated protein complex assembly // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from direct assay /// 0070407 // oxidation-dependent protein catabolic process // inferred from mutant phenotype /// 0090296 // regulation of mitochondrial DNA replication // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from mutant phenotype /// 0016020 // membrane // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0004176 // ATP-dependent peptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0043531 // ADP binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0051880 // G-quadruplex DNA binding // inferred from direct assay /// 0070182 // DNA polymerase binding // inferred from physical interaction /// 0070361 // mitochondrial light strand promoter anti-sense binding // inferred from direct assay /// 0070362 // mitochondrial heavy strand promoter anti-sense binding // inferred from direct assay /// 0070363 // mitochondrial light strand promoter sense binding // inferred from direct assay /// 0070364 // mitochondrial heavy strand promoter sense binding // inferred from direct assay -146.95 224.35 -8.91 0.00 0.00 -4.42
214789_x_at 214789_x_at AA524274 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA524274 /FEA=EST /DB_XREF=gi:2265202 /DB_XREF=est:ng34d08.s1 /CLONE=IMAGE:936687 /UG=Hs.155160 Splicing factor, arginineserine-rich, 46kD AA524274 serine/arginine-rich splicing factor 8 SRSF8 10929 NM_032102 /// NR_103726 /// XR_428967 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 104.75 254.28 8.91 0.00 0.00 -4.42
200961_at 200961_at NM_012248 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012248.1 /DEF=Homo sapiens selenophosphate synthetase 2 (SPS2), mRNA. /FEA=mRNA /GEN=SPS2 /PROD=selenophosphate synthetase 2 /DB_XREF=gi:7657612 /UG=Hs.118725 selenophosphate synthetase 2 /FL=gb:BC002381.1 gb:U43286.1 gb:NM_012248.1 NM_012248 selenophosphate synthetase 2 SEPHS2 22928 NM_012248 0008152 // metabolic process // inferred from electronic annotation /// 0016260 // selenocysteine biosynthetic process // non-traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // non-traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 92.67 150.64 8.87 0.00 0.00 -4.42
212725_s_at 212725_s_at N37081 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N37081 /FEA=EST /DB_XREF=gi:1158223 /DB_XREF=est:yy41f04.s1 /CLONE=IMAGE:273823 /UG=Hs.699 peptidylprolyl isomerase B (cyclophilin B) N37081 taurine up-regulated 1 (non-protein coding) TUG1 55000 NR_002323 /// NR_110492 /// NR_110493 149.20 276.10 8.86 0.00 0.00 -4.42
210338_s_at 210338_s_at AB034951 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB034951.1 /DEF=Homo sapiens HSC54 mRNA for heat shock cognate protein 54, complete cds. /FEA=mRNA /GEN=HSC54 /PROD=heat shock cognate protein 54 /DB_XREF=gi:11526572 /UG=Hs.180414 heat shock 70kD protein 8 /FL=gb:AB034951.1 AB034951 heat shock 70kDa protein 8 /// small nucleolar RNA, C/D box 14C /// small nucleolar RNA, C/D box 14D HSPA8 /// SNORD14C /// SNORD14D 3312 /// 85389 /// 85390 NM_006597 /// NM_153201 /// NR_001453 /// NR_001454 /// XM_006718831 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006457 // protein folding // non-traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042026 // protein refolding // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 1902904 // negative regulation of fibril organization // inferred from direct assay 0000974 // Prp19 complex // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0061202 // clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0042623 // ATPase activity, coupled // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay 1535.27 2211.99 8.85 0.00 0.00 -4.42
217992_s_at 217992_s_at NM_024329 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024329.1 /DEF=Homo sapiens hypothetical protein MGC4342 (MGC4342), mRNA. /FEA=mRNA /GEN=MGC4342 /PROD=hypothetical protein MGC4342 /DB_XREF=gi:13443015 /UG=Hs.301342 hypothetical protein MGC4342 /FL=gb:BC003033.1 gb:NM_024329.1 NM_024329 EF-hand domain family, member D2 EFHD2 79180 NM_024329 /// XM_005246000 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 127.52 167.79 8.84 0.00 0.00 -4.42
209355_s_at 209355_s_at AB000889 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB000889.1 /DEF=Homo sapiens mRNA for phosphatidic acid phosphatase 2b, complete cds. /FEA=mRNA /PROD=phosphatidic acid phosphatase 2b /DB_XREF=gi:2467299 /UG=Hs.331371 phosphatidic acid phosphatase type 2B /FL=gb:U79294.1 gb:AB000889.1 gb:AF017786.1 AB000889 phosphatidic acid phosphatase type 2B PPAP2B 8613 NM_003713 /// NM_177414 0001568 // blood vessel development // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008354 // germ cell migration // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030111 // regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0034109 // homotypic cell-cell adhesion // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0044328 // canonical Wnt signaling pathway involved in positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0044329 // canonical Wnt signaling pathway involved in positive regulation of cell-cell adhesion // inferred from mutant phenotype /// 0044330 // canonical Wnt signaling pathway involved in positive regulation of wound healing // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005912 // adherens junction // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // traceable author statement /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // inferred from electronic annotation -147.50 114.15 -8.84 0.00 0.00 -4.42
215313_x_at 215313_x_at AA573862 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA573862 /FEA=EST /DB_XREF=gi:2348377 /DB_XREF=est:nk08f01.s1 /CLONE=IMAGE:1012921 /UG=Hs.181244 major histocompatibility complex, class I, A AA573862 major histocompatibility complex, class I, A HLA-A 3105 NM_001242758 /// NM_002116 /// XM_005275331 /// XM_006725750 /// XM_006725751 /// XM_006725857 /// XM_006725858 /// XM_006725859 /// XM_006725946 /// XM_006726046 /// XM_006726047 /// XM_006726135 /// XM_006726136 /// XM_006726137 /// XR_430999 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0006955 // immune response // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016045 // detection of bacterium // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 2000568 // positive regulation of memory T cell activation // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005797 // Golgi medial cisterna // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070971 // endoplasmic reticulum exit site // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from direct assay /// 0030881 // beta-2-microglobulin binding // inferred from sequence or structural similarity /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0042608 // T cell receptor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046977 // TAP binding // inferred from direct assay -759.75 1612.00 -8.80 0.00 0.00 -4.42
209358_at 209358_at AF118094 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF118094.1 /DEF=Homo sapiens PRO2134 mRNA, complete cds. /FEA=mRNA /PROD=PRO2134 /DB_XREF=gi:6650833 /UG=Hs.83126 TATA box binding protein (TBP)-associated factor, RNA polymerase II, I, 28kD /FL=gb:D63705.1 gb:NM_005643.1 gb:AF118094.1 AF118094 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa TAF11 6882 NM_001270488 /// NM_005643 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred by curator /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred by curator /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0043923 // positive regulation by host of viral transcription // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042809 // vitamin D receptor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 88.47 98.76 8.78 0.00 0.00 -4.42
213029_at 213029_at BG478428 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG478428 /FEA=EST /DB_XREF=gi:13410807 /DB_XREF=est:602523839F1 /CLONE=IMAGE:4642353 /UG=Hs.326416 Homo sapiens mRNA; cDNA DKFZp564H1916 (from clone DKFZp564H1916) BG478428 nuclear factor I/B NFIB 4781 NM_001190737 /// NM_001190738 /// NM_001282787 /// NM_005596 /// XM_005251467 /// XM_005251468 /// XM_005251469 /// XM_005251470 /// XM_005251471 /// XM_006716773 /// XM_006716774 /// XM_006716775 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002062 // chondrocyte differentiation // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from sequence or structural similarity /// 0021740 // principal sensory nucleus of trigeminal nerve development // inferred from sequence or structural similarity /// 0021960 // anterior commissure morphogenesis // inferred from sequence or structural similarity /// 0030324 // lung development // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060486 // Clara cell differentiation // inferred from sequence or structural similarity /// 0060509 // Type I pneumocyte differentiation // inferred from sequence or structural similarity /// 0060510 // Type II pneumocyte differentiation // inferred from sequence or structural similarity /// 0061141 // lung ciliated cell differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 2000791 // negative regulation of mesenchymal cell proliferation involved in lung development // inferred from sequence or structural similarity /// 2000795 // negative regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0044300 // cerebellar mossy fiber // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 182.82 303.79 8.78 0.00 0.00 -4.42
212333_at 212333_at AL049943 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049943.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564F0522 (from clone DKFZp564F0522). /FEA=mRNA /GEN=DKFZp564F0522 /PROD=hypothetical protein /DB_XREF=gi:4884187 /UG=Hs.23060 DKFZP564F0522 protein AL049943 family with sequence similarity 98, member A FAM98A 25940 NM_015475 0044822 // poly(A) RNA binding // inferred from direct assay 238.05 228.95 8.77 0.00 0.00 -4.42
210229_s_at 210229_s_at M11734 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M11734.1 /DEF=Human granulocytemacrophage colony-stimulating factor mRNA, complete cds. /FEA=mRNA /GEN=CSF2 /DB_XREF=gi:181149 /UG=Hs.1349 colony stimulating factor 2 (granulocyte-macrophage) /FL=gb:M11734.1 gb:NM_000758.1 M11734 colony stimulating factor 2 (granulocyte-macrophage) CSF2 1437 NM_000758 0001892 // embryonic placenta development // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from direct assay /// 0032747 // positive regulation of interleukin-23 production // inferred from direct assay /// 0042045 // epithelial fluid transport // inferred from electronic annotation /// 0042116 // macrophage activation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from direct assay /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045918 // negative regulation of cytolysis // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071803 // positive regulation of podosome assembly // inferred from direct assay /// 0097028 // dendritic cell differentiation // inferred from direct assay /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005129 // granulocyte macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation -578.57 293.39 -8.77 0.00 0.00 -4.42
209001_s_at 209001_s_at BC005398 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005398.1 /DEF=Homo sapiens, clone MGC:12537, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:12537) /DB_XREF=gi:13529286 /UG=Hs.106909 DKFZP566D193 protein /FL=gb:BC005398.1 BC005398 anaphase promoting complex subunit 13 ANAPC13 25847 NM_001242374 /// NM_001242375 /// NM_015391 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // inferred from direct assay 254.35 606.42 8.76 0.00 0.00 -4.42
219778_at 219778_at NM_012082 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012082.2 /DEF=Homo sapiens Friend of GATA2 (FOG2), mRNA. /FEA=mRNA /GEN=FOG2 /PROD=Friend of GATA2 /DB_XREF=gi:10862688 /UG=Hs.106309 Friend of GATA2 /FL=gb:NM_012082.2 gb:AF119334.1 NM_012082 zinc finger protein, FOG family member 2 ZFPM2 23414 NM_012082 /// XM_005250850 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // inferred from mutant phenotype /// 0003221 // right ventricular cardiac muscle tissue morphogenesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // inferred from mutant phenotype /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 2000020 // positive regulation of male gonad development // inferred from electronic annotation /// 2000195 // negative regulation of female gonad development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0001071 // nucleic acid binding transcription factor activity // inferred from electronic annotation /// 0001105 // RNA polymerase II transcription coactivator activity // non-traceable author statement /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -280.45 223.00 -8.75 0.00 0.00 -4.42
209290_s_at 209290_s_at BC001283 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001283.1 /DEF=Homo sapiens, Similar to nuclear factor IB, clone MGC:5146, mRNA, complete cds. /FEA=mRNA /PROD=Similar to nuclear factor IB /DB_XREF=gi:12654878 /UG=Hs.33287 nuclear factor IB /FL=gb:BC001283.1 gb:U85193.1 gb:NM_005596.1 BC001283 nuclear factor I/B NFIB 4781 NM_001190737 /// NM_001190738 /// NM_001282787 /// NM_005596 /// XM_005251467 /// XM_005251468 /// XM_005251469 /// XM_005251470 /// XM_005251471 /// XM_006716773 /// XM_006716774 /// XM_006716775 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002062 // chondrocyte differentiation // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from sequence or structural similarity /// 0021740 // principal sensory nucleus of trigeminal nerve development // inferred from sequence or structural similarity /// 0021960 // anterior commissure morphogenesis // inferred from sequence or structural similarity /// 0030324 // lung development // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060486 // Clara cell differentiation // inferred from sequence or structural similarity /// 0060509 // Type I pneumocyte differentiation // inferred from sequence or structural similarity /// 0060510 // Type II pneumocyte differentiation // inferred from sequence or structural similarity /// 0061141 // lung ciliated cell differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 2000791 // negative regulation of mesenchymal cell proliferation involved in lung development // inferred from sequence or structural similarity /// 2000795 // negative regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0044300 // cerebellar mossy fiber // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 317.63 541.69 8.73 0.00 0.00 -4.42
203370_s_at 203370_s_at NM_005451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005451.2 /DEF=Homo sapiens enigma (LIM domain protein) (ENIGMA), mRNA. /FEA=mRNA /GEN=ENIGMA /PROD=enigma protein /DB_XREF=gi:11496884 /UG=Hs.102948 enigma (LIM domain protein) /FL=gb:NM_005451.2 gb:BC001093.1 gb:AF265209.1 NM_005451 PDZ and LIM domain 7 (enigma) PDLIM7 9260 NM_005451 /// NM_203352 /// NM_203353 /// NM_213636 /// NR_103804 /// XM_006714937 /// XM_006714938 /// XM_006714939 /// XM_006714940 /// XM_006714941 0001503 // ossification // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation 0001725 // stress fiber // inferred from electronic annotation /// 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 131.63 222.36 8.71 0.00 0.00 -4.42
212168_at 212168_at AL514547 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL514547 /FEA=EST /DB_XREF=gi:12778041 /DB_XREF=est:AL514547 /CLONE=CL0BB004ZC07 (3 prime) /UG=Hs.180895 putative brain nuclearly-targeted protein AL514547 RNA binding motif protein 12 RBM12 10137 NM_001198838 /// NM_001198840 /// NM_006047 /// NM_152838 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 189.78 168.44 8.71 0.00 0.00 -4.42
204744_s_at 204744_s_at NM_013417 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013417.1 /DEF=Homo sapiens isoleucine-tRNA synthetase (IARS), transcript variant long, mRNA. /FEA=mRNA /GEN=IARS /PROD=isoleucine-tRNA synthetase /DB_XREF=gi:7770071 /UG=Hs.172801 isoleucine-tRNA synthetase /FL=gb:U04953.1 gb:D28473.1 gb:NM_013417.1 NM_013417 isoleucyl-tRNA synthetase IARS 3376 NM_002161 /// NM_013417 /// NR_073446 0001649 // osteoblast differentiation // inferred from direct assay /// 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006428 // isoleucyl-tRNA aminoacylation // inferred from electronic annotation /// 0006450 // regulation of translational fidelity // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002161 // aminoacyl-tRNA editing activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004822 // isoleucine-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -327.08 842.31 -8.70 0.00 0.00 -4.42
210907_s_at 210907_s_at BC002506 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002506.1 /DEF=Homo sapiens, programmed cell death 10, clone MGC:1212, mRNA, complete cds. /FEA=mRNA /PROD=programmed cell death 10 /DB_XREF=gi:12803370 /UG=Hs.28866 programmed cell death 10 /FL=gb:BC002506.1 BC002506 programmed cell death 10 PDCD10 11235 NM_007217 /// NM_145859 /// NM_145860 /// XM_005247086 /// XM_005247087 /// XM_005247088 /// XM_006713485 0001525 // angiogenesis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction -189.30 726.08 -8.70 0.00 0.00 -4.42
218041_x_at 218041_x_at NM_018573 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018573.1 /DEF=Homo sapiens hypothetical protein PRO1068 (PRO1068), mRNA. /FEA=mRNA /GEN=PRO1068 /PROD=hypothetical protein PRO1068 /DB_XREF=gi:8924006 /UG=Hs.321158 hypothetical protein PRO1068 /FL=gb:AF116620.1 gb:NM_018573.1 NM_018573 solute carrier family 38, member 2 SLC38A2 54407 NM_018976 /// XM_005268983 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0014047 // glutamate secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation -857.77 1757.21 -8.70 0.00 0.00 -4.42
212944_at 212944_at AK024896 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024896.1 /DEF=Homo sapiens cDNA: FLJ21243 fis, clone COL01164. /FEA=mRNA /DB_XREF=gi:10437310 /UG=Hs.268016 Homo sapiens cDNA: FLJ21243 fis, clone COL01164 AK024896 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 SLC5A3 6526 NM_006933 0006020 // inositol metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0015798 // myo-inositol transport // traceable author statement /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0015935 // small ribosomal subunit // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005367 // myo-inositol:sodium symporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 76.83 72.56 8.70 0.00 0.00 -4.42
219041_s_at 219041_s_at NM_014374 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014374.1 /DEF=Homo sapiens zinc finger protein (AP4), mRNA. /FEA=mRNA /GEN=AP4 /PROD=zinc finger protein /DB_XREF=gi:7656889 /UG=Hs.90693 zinc finger protein /FL=gb:BC000363.1 gb:NM_014374.1 NM_014374 replication initiator 1 REPIN1 29803 NM_001099695 /// NM_001099696 /// NM_013400 /// NM_014374 /// XM_005249985 /// XM_006715947 /// XM_006715948 /// XM_006715949 /// XM_006715950 /// XM_006715951 /// XM_006715952 /// XM_006715953 0006260 // DNA replication // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0046839 // phospholipid dephosphorylation // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 2000191 // regulation of fatty acid transport // inferred from electronic annotation /// 2001273 // regulation of glucose import in response to insulin stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005664 // nuclear origin of replication recognition complex // traceable author statement /// 0005811 // lipid particle // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0022626 // cytosolic ribosome // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 86.42 136.94 8.70 0.00 0.00 -4.42
213857_s_at 213857_s_at BG230614 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG230614 /FEA=EST /DB_XREF=gi:12725656 /DB_XREF=est:naf41b12.x1 /CLONE=IMAGE:4143335 /UG=Hs.82685 CD47 antigen (Rh-related antigen, integrin-associated signal transducer) BG230614 CD47 molecule CD47 961 NM_001025079 /// NM_001025080 /// NM_001777 /// NM_198793 /// XM_005247908 /// XM_005247909 /// XR_241521 /// XR_241522 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008228 // opsonization // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009617 // response to bacterium // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0070053 // thrombospondin receptor activity // inferred from physical interaction -181.50 263.35 -8.69 0.00 0.00 -4.42
200905_x_at 200905_x_at NM_005516 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005516.1 /DEF=Homo sapiens major histocompatibility complex, class I, E (HLA-E), mRNA. /FEA=mRNA /GEN=HLA-E /PROD=major histocompatibility complex, class I, E /DB_XREF=gi:5031744 /UG=Hs.181392 major histocompatibility complex, class I, E /FL=gb:BC002578.1 gb:NM_005516.1 NM_005516 major histocompatibility complex, class I, E HLA-E 3133 NM_005516 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002476 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib // inferred from direct assay /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002717 // positive regulation of natural killer cell mediated immunity // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from direct assay /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay -378.35 767.77 -8.68 0.00 0.00 -4.42
201983_s_at 201983_s_at AW157070 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW157070 /FEA=EST /DB_XREF=gi:6228471 /DB_XREF=est:au91e07.x1 /CLONE=IMAGE:2783652 /UG=Hs.77432 epidermal growth factor receptor (avian erythroblastic leukemia viral (v-erb-b) oncogene homolog) /FL=gb:NM_005228.1 AW157070 epidermal growth factor receptor EGFR 1956 NM_005228 /// NM_201282 /// NM_201283 /// NM_201284 0000165 // MAPK cascade // non-traceable author statement /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001503 // ossification // non-traceable author statement /// 0001889 // liver development // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001942 // hair follicle development // inferred from electronic annotation /// 0005976 // polysaccharide metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // non-traceable author statement /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from direct assay /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008544 // epidermis development // inferred from electronic annotation /// 0010960 // magnesium ion homeostasis // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016101 // diterpenoid metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0019694 // alkanesulfonate metabolic process // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031659 // positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032930 // positive regulation of superoxide anion generation // inferred from electronic annotation /// 0033590 // response to cobalamin // inferred from electronic annotation /// 0033594 // response to hydroxyisoflavone // inferred from electronic annotation /// 0033993 // response to lipid // inferred from electronic annotation /// 0035413 // positive regulation of catenin import into nucleus // inferred from mutant phenotype /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from direct assay /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0042698 // ovulation cycle // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // inferred from electronic annotation /// 0043006 // activation of phospholipase A2 activity by calcium-mediated signaling // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043586 // tongue development // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045739 // positive regulation of DNA repair // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045909 // positive regulation of vasodilation // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048143 // astrocyte activation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048546 // digestive tract morphogenesis // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0050999 // regulation of nitric-oxide synthase activity // inferred from direct assay /// 0051205 // protein insertion into membrane // traceable author statement /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0060571 // morphogenesis of an epithelial fold // inferred from electronic annotation /// 0070141 // response to UV-A // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from sequence or structural similarity /// 0071392 // cellular response to estradiol stimulus // inferred from direct assay /// 0071549 // cellular response to dexamethasone stimulus // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // non-traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // traceable author statement /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070435 // Shc-EGFR complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // non-traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // non-traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from mutant phenotype /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from direct assay /// 0005006 // epidermal growth factor-activated receptor activity // inferred from direct assay /// 0005006 // epidermal growth factor-activated receptor activity // non-traceable author statement /// 0005102 // receptor binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0030235 // nitric-oxide synthase regulator activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048408 // epidermal growth factor binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay -81.00 78.67 -8.68 0.00 0.00 -4.43
206026_s_at 206026_s_at NM_007115 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007115.1 /DEF=Homo sapiens tumor necrosis factor, alpha-induced protein 6 (TNFAIP6), mRNA. /FEA=mRNA /GEN=TNFAIP6 /PROD=tumor necrosis factor, alpha-induced protein 6 /DB_XREF=gi:6005905 /UG=Hs.29352 tumor necrosis factor, alpha-induced protein 6 /FL=gb:NM_007115.1 NM_007115 tumor necrosis factor, alpha-induced protein 6 TNFAIP6 7130 NM_007115 0006954 // inflammatory response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement 0005540 // hyaluronic acid binding // inferred from electronic annotation -96.83 64.24 -8.67 0.00 0.00 -4.43
202307_s_at 202307_s_at NM_000593 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000593.2 /DEF=Homo sapiens ATP-binding cassette, sub-family B (MDRTAP), member 2 (ABCB2), mRNA. /FEA=mRNA /GEN=ABCB2 /PROD=ATP-binding cassette, sub-family B, member 2 /DB_XREF=gi:9665247 /UG=Hs.158164 ATP-binding cassette, sub-family B (MDRTAP), member 2 /FL=gb:L21204.1 gb:L21205.1 gb:L21206.1 gb:L21207.1 gb:L21208.1 gb:NM_000593.2 NM_000593 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) TAP1 6890 NM_000593 /// NM_001292022 0001916 // positive regulation of T cell mediated cytotoxicity // /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006952 // defense response // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019060 // intracellular transport of viral protein in host cell // inferred from mutant phenotype /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // inferred from mutant phenotype /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0046967 // cytosol to ER transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005829 // cytosol // non-traceable author statement /// 0005886 // plasma membrane // /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0042825 // TAP complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0015197 // peptide transporter activity // inferred from genetic interaction /// 0015197 // peptide transporter activity // inferred from mutant phenotype /// 0015421 // oligopeptide-transporting ATPase activity // /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0023029 // MHC class Ib protein binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // non-traceable author statement /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from direct assay /// 0046978 // TAP1 binding // inferred from sequence or structural similarity /// 0046979 // TAP2 binding // inferred from physical interaction /// 0046980 // tapasin binding // -77.50 75.60 -8.67 0.00 0.00 -4.43
212472_at 212472_at BE965029 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE965029 /FEA=EST /DB_XREF=gi:11768976 /DB_XREF=est:601658812R1 /CLONE=IMAGE:3886131 /UG=Hs.198793 Homo sapiens cDNA: FLJ22463 fis, clone HRC10126 BE965029 microtubule associated monooxygenase, calponin and LIM domain containing 2 MICAL2 9645 NM_001282663 /// NM_001282664 /// NM_001282665 /// NM_001282666 /// NM_001282667 /// NM_001282668 /// NM_014632 /// XM_005253249 /// XM_005253251 /// XM_006718391 /// XM_006718392 /// XM_006718393 0001947 // heart looping // inferred from sequence or structural similarity /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0010735 // positive regulation of transcription via serum response element binding // inferred from mutant phenotype /// 0019417 // sulfur oxidation // inferred from direct assay /// 0019417 // sulfur oxidation // inferred from sequence or structural similarity /// 0030042 // actin filament depolymerization // inferred from direct assay /// 0030042 // actin filament depolymerization // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen // inferred from sequence or structural similarity /// 0043914 // NADPH:sulfur oxidoreductase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0071949 // FAD binding // inferred from sequence or structural similarity 214.20 390.88 8.66 0.00 0.00 -4.43
209630_s_at 209630_s_at AL043967 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL043967 /FEA=EST /DB_XREF=gi:5432195 /DB_XREF=est:DKFZp434H1028_s1 /CLONE=DKFZp434H1028 /UG=Hs.27747 G protein-coupled receptor 37 (endothelin receptor type B-like) /FL=gb:U87460.1 AL043967 F-box and WD repeat domain containing 2 FBXW2 26190 NM_012164 /// XM_005251908 /// XM_005251910 /// XM_005251912 /// XM_005251913 /// XM_006717049 /// XM_006717050 /// XM_006717051 0006464 // cellular protein modification process // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0016567 // protein ubiquitination // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 71.12 74.94 8.66 0.00 0.00 -4.43
201054_at 201054_at BE966599 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE966599 /FEA=EST /DB_XREF=gi:11772191 /DB_XREF=est:601660283R1 /CLONE=IMAGE:3906044 /UG=Hs.77492 heterogeneous nuclear ribonucleoprotein A0 /FL=gb:BC001008.1 gb:NM_006805.1 gb:U23803.1 BE966599 heterogeneous nuclear ribonucleoprotein A0 HNRNPA0 10949 NM_006805 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from sequence or structural similarity /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from sequence or structural similarity /// 0070935 // 3'-UTR-mediated mRNA stabilization // traceable author statement 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0017091 // AU-rich element binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 273.62 406.71 8.64 0.00 0.00 -4.43
203738_at 203738_at AI421192 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI421192 /FEA=EST /DB_XREF=gi:4267123 /DB_XREF=est:tf24e12.x1 /CLONE=IMAGE:2097166 /UG=Hs.151046 hypothetical protein FLJ11193 /FL=gb:NM_018356.1 AI421192 chromosome 5 open reading frame 22 C5orf22 55322 NM_018356 /// XM_005248319 /// XM_006714479 /// XM_006714480 /// XR_241704 0008013 // beta-catenin binding // inferred from electronic annotation 67.50 139.82 8.62 0.00 0.00 -4.43
209373_at 209373_at BC003179 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003179.1 /DEF=Homo sapiens, clone MGC:4419, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:4419) /DB_XREF=gi:13112010 /UG=Hs.185055 BENE protein /FL=gb:BC003179.1 gb:NM_005434.1 BC003179 mal, T-cell differentiation protein-like MALL 7851 NM_005434 0042632 // cholesterol homeostasis // non-traceable author statement 0000139 // Golgi membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 233.15 281.02 8.60 0.00 0.00 -4.43
201918_at 201918_at AI927944 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI927944 /FEA=EST /DB_XREF=gi:5663908 /DB_XREF=est:wp03g05.x1 /CLONE=IMAGE:2463800 /UG=Hs.42484 hypothetical protein FLJ10618 /FL=gb:NM_018155.1 AI927944 solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 SLC25A36 55186 NM_001104647 /// NM_018155 /// XM_005247575 /// XM_006713685 0006810 // transport // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -199.15 247.55 -8.58 0.00 0.00 -4.43
202864_s_at 202864_s_at NM_003113 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003113.1 /DEF=Homo sapiens nuclear antigen Sp100 (SP100), mRNA. /FEA=mRNA /GEN=SP100 /PROD=nuclear antigen Sp100 /DB_XREF=gi:4507164 /UG=Hs.77617 nuclear antigen Sp100 /FL=gb:M60618.1 gb:NM_003113.1 NM_003113 SP100 nuclear antigen SP100 6672 NM_001080391 /// NM_001206701 /// NM_001206702 /// NM_001206703 /// NM_001206704 /// NM_003113 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000723 // telomere maintenance // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // inferred from direct assay /// 0010596 // negative regulation of endothelial cell migration // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0032526 // response to retinoic acid // inferred from direct assay /// 0032897 // negative regulation of viral transcription // inferred from direct assay /// 0034097 // response to cytokine // inferred from direct assay /// 0034340 // response to type I interferon // inferred from direct assay /// 0034340 // response to type I interferon // inferred from mutant phenotype /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0034341 // response to interferon-gamma // inferred from mutant phenotype /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0045765 // regulation of angiogenesis // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0046826 // negative regulation of protein export from nucleus // inferred from mutant phenotype /// 0048384 // retinoic acid receptor signaling pathway // inferred by curator /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051271 // negative regulation of cellular component movement // inferred from mutant phenotype /// 0060333 // interferon-gamma-mediated signaling pathway // inferred by curator /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // inferred by curator /// 1902041 // regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 1902044 // regulation of Fas signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0030870 // Mre11 complex // inferred from direct assay /// 0034399 // nuclear periphery // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from physical interaction -143.03 207.79 -8.57 0.00 0.00 -4.43
218163_at 218163_at NM_014060 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014060.1 /DEF=Homo sapiens MCT-1 protein (MCT-1), mRNA. /FEA=mRNA /GEN=MCT-1 /PROD=MCT-1 protein /DB_XREF=gi:7662501 /UG=Hs.102696 MCT-1 protein /FL=gb:BC001013.1 gb:AB034206.1 gb:NM_014060.1 NM_014060 malignant T cell amplified sequence 1 MCTS1 28985 NM_001137554 /// NM_014060 0001731 // formation of translation preinitiation complex // inferred from direct assay /// 0002192 // IRES-dependent translational initiation // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0032790 // ribosome disassembly // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation 126.83 283.56 8.57 0.00 0.00 -4.43
213175_s_at 213175_s_at AL049650 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049650 /DEF=Human DNA sequence from clone 734P14 on chromosome 20. Contains a KRAB box and C2H2 Zinc finger domain protein pseudogene, the gene for snRNP (small nuclear ribonucleoprotein particle) proteins B and B and the gene for a novel transglutaminase si... /FEA=mRNA_3 /DB_XREF=gi:5123801 /UG=Hs.83753 small nuclear ribonucleoprotein polypeptides B and B1 AL049650 small nuclear ribonucleoprotein polypeptides B and B1 SNRPB 6628 NM_003091 /// NM_198216 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008334 // histone mRNA metabolic process // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005683 // U7 snRNP // inferred from direct assay /// 0005685 // U1 snRNP // inferred from direct assay /// 0005687 // U4 snRNP // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005732 // small nucleolar ribonucleoprotein complex // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0034709 // methylosome // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0071208 // histone pre-mRNA DCP binding // inferred from electronic annotation -185.25 1072.20 -8.55 0.00 0.00 -4.43
213262_at 213262_at AI932370 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI932370 /FEA=EST /DB_XREF=gi:5671107 /DB_XREF=est:wd27e11.x1 /CLONE=IMAGE:2329388 /UG=Hs.159492 spastic ataxia of Charlevoix-Saguenay (sacsin) /FL=gb:NM_014363.1 AI932370 sacsin molecular chaperone SACS 26278 NM_001278055 /// NM_014363 /// XM_005266338 0006457 // protein folding // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0090084 // negative regulation of inclusion body assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0030424 // axon // traceable author statement /// 0030425 // dendrite // traceable author statement /// 0070852 // cell body fiber // traceable author statement 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from direct assay /// 0070628 // proteasome binding // inferred from physical interaction 139.30 231.45 8.53 0.00 0.00 -4.43
214974_x_at 214974_x_at AK026546 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026546.1 /DEF=Homo sapiens cDNA: FLJ22893 fis, clone KAT04792. /FEA=mRNA /DB_XREF=gi:10439427 /UG=Hs.287716 Homo sapiens cDNA: FLJ22893 fis, clone KAT04792 AK026546 chemokine (C-X-C motif) ligand 5 CXCL5 6374 NM_002994 0006935 // chemotaxis // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060326 // cell chemotaxis // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation -263.83 153.34 -8.53 0.00 0.00 -4.43
202047_s_at 202047_s_at AI458128 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI458128 /FEA=EST /DB_XREF=gi:4312134 /DB_XREF=est:tj64g03.x1 /CLONE=IMAGE:2146324 /UG=Hs.107374 chromobox homolog 6 /FL=gb:NM_014292.1 AI458128 chromobox homolog 6 CBX6 23466 NM_014292 /// XM_005261412 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0031519 // PcG protein complex // inferred from direct assay 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 124.33 134.16 8.52 0.00 0.00 -4.43
200826_at 200826_at NM_004597 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004597.3 /DEF=Homo sapiens small nuclear ribonucleoprotein D2 polypeptide (16.5kD) (SNRPD2), mRNA. /FEA=mRNA /GEN=SNRPD2 /PROD=small nuclear ribonucleoprotein D2 polypeptide(16.5kD) /DB_XREF=gi:7242206 /UG=Hs.53125 small nuclear ribonucleoprotein D2 polypeptide (16.5kD) /FL=gb:BC000486.1 gb:BC001930.1 gb:U15008.1 gb:NM_004597.3 NM_004597 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa SNRPD2 6633 NM_004597 /// NM_177542 /// XM_005259180 0000245 // spliceosomal complex assembly // traceable author statement /// 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005685 // U1 snRNP // inferred from direct assay /// 0005687 // U4 snRNP // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0034709 // methylosome // inferred from direct assay /// 0034715 // pICln-Sm protein complex // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 212.47 1097.56 8.51 0.00 0.00 -4.43
218026_at 218026_at NM_014019 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014019.1 /DEF=Homo sapiens HSPC009 protein (HSPC009), mRNA. /FEA=mRNA /GEN=HSPC009 /PROD=HSPC009 protein /DB_XREF=gi:7661731 /UG=Hs.16059 HSPC009 protein /FL=gb:BC002698.1 gb:AF070665.1 gb:NM_014019.1 NM_014019 cytochrome c oxidase assembly factor 3 COA3 28958 NM_001040431 0033617 // mitochondrial respiratory chain complex IV assembly // inferred from mutant phenotype /// 0070131 // positive regulation of mitochondrial translation // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031305 // integral component of mitochondrial inner membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 145.85 352.50 8.51 0.00 0.00 -4.43
201968_s_at 201968_s_at NM_002633 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002633.1 /DEF=Homo sapiens phosphoglucomutase 1 (PGM1), mRNA. /FEA=mRNA /GEN=PGM1 /PROD=phosphoglucomutase 1 /DB_XREF=gi:4505764 /UG=Hs.1869 phosphoglucomutase 1 /FL=gb:BC001756.1 gb:M83088.1 gb:NM_002633.1 NM_002633 phosphoglucomutase 1 PGM1 5236 NM_001172818 /// NM_001172819 /// NM_002633 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // not recorded /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // non-traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // traceable author statement /// 0019388 // galactose catabolic process // not recorded /// 0019388 // galactose catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // inferred from direct assay /// 0004614 // phosphoglucomutase activity // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -126.85 175.47 -8.51 0.00 0.00 -4.43
210014_x_at 210014_x_at AF023266 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF023266.1 /DEF=Homo sapiens NAD+-specific isocitrate dehydrogenase beta subunit isoform B mRNA, nuclear gene encoding mitochondrial product, complete cds. /FEA=mRNA /PROD=NAD+-specific isocitrate dehydrogenase betasubunit isoform B /DB_XREF=gi:4103447 /UG=Hs.155410 isocitrate dehydrogenase 3 (NAD+) beta /FL=gb:AF023266.1 AF023266 isocitrate dehydrogenase 3 (NAD+) beta IDH3B 3420 NM_001258384 /// NM_006899 /// NM_174855 /// NM_174856 /// XM_005260716 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006102 // isocitrate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006734 // NADH metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 107.95 270.15 8.50 0.00 0.00 -4.43
203925_at 203925_at NM_002061 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002061.1 /DEF=Homo sapiens glutamate-cysteine ligase, modifier subunit (GCLM), mRNA. /FEA=mRNA /GEN=GCLM /PROD=glutamate-cysteine ligase regulatory protein /DB_XREF=gi:4504010 /UG=Hs.89709 glutamate-cysteine ligase, modifier subunit /FL=gb:NM_002061.1 gb:L35546.1 NM_002061 glutamate-cysteine ligase, modifier subunit GCLM 2730 NM_002061 /// XM_005270754 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006534 // cysteine metabolic process // inferred from electronic annotation /// 0006536 // glutamate metabolic process // inferred from direct assay /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // inferred from direct assay /// 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // inferred from mutant phenotype /// 0006750 // glutathione biosynthetic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006979 // response to oxidative stress // inferred from direct assay /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0035229 // positive regulation of glutamate-cysteine ligase activity // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0050880 // regulation of blood vessel size // inferred from mutant phenotype /// 0051409 // response to nitrosative stress // inferred from electronic annotation /// 0051900 // regulation of mitochondrial depolarization // inferred from electronic annotation /// 1901687 // glutathione derivative biosynthetic process // traceable author statement /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0017109 // glutamate-cysteine ligase complex // inferred from electronic annotation 0004357 // glutamate-cysteine ligase activity // inferred from direct assay /// 0004357 // glutamate-cysteine ligase activity // inferred from mutant phenotype /// 0016874 // ligase activity // inferred from electronic annotation /// 0035226 // glutamate-cysteine ligase catalytic subunit binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -370.35 491.98 -8.50 0.00 0.00 -4.43
209716_at 209716_at M37435 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M37435.1 /DEF=Human macrophage-specific colony-stimulating factor (CSF-1) mRNA, complete cds. /FEA=mRNA /GEN=CSF1 /DB_XREF=gi:181134 /UG=Hs.173894 colony stimulating factor 1 (macrophage) /FL=gb:M37435.1 gb:M64592.1 M37435 colony stimulating factor 1 (macrophage) CSF1 1435 NM_000757 /// NM_172210 /// NM_172211 /// NM_172212 0001503 // ossification // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // inferred from sequence or structural similarity /// 0002158 // osteoclast proliferation // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0003006 // developmental process involved in reproduction // inferred from sequence or structural similarity /// 0006954 // inflammatory response // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010743 // regulation of macrophage derived foam cell differentiation // non-traceable author statement /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from direct assay /// 0030097 // hemopoiesis // non-traceable author statement /// 0030154 // cell differentiation // non-traceable author statement /// 0030225 // macrophage differentiation // traceable author statement /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030316 // osteoclast differentiation // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0032270 // positive regulation of cellular protein metabolic process // inferred from direct assay /// 0032946 // positive regulation of mononuclear cell proliferation // inferred from direct assay /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0042117 // monocyte activation // non-traceable author statement /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // inferred from direct assay /// 0045657 // positive regulation of monocyte differentiation // inferred from sequence or structural similarity /// 0045672 // positive regulation of osteoclast differentiation // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from sequence or structural similarity /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060611 // mammary gland fat development // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005125 // cytokine activity // inferred from direct assay /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from sequence or structural similarity /// 0005157 // macrophage colony-stimulating factor receptor binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // non-traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay -208.62 146.49 -8.50 0.00 0.00 -4.43
201170_s_at 201170_s_at NM_003670 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003670.1 /DEF=Homo sapiens basic helix-loop-helix domain containing, class B, 2 (BHLHB2), mRNA. /FEA=mRNA /GEN=BHLHB2 /PROD=differentiated embryo chondrocyte expressed gene1 /DB_XREF=gi:4503298 /UG=Hs.171825 basic helix-loop-helix domain containing, class B, 2 /FL=gb:AB004066.1 gb:NM_003670.1 NM_003670 basic helix-loop-helix family, member e40 BHLHE40 8553 NM_003670 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from direct assay /// 0043153 // entrainment of circadian clock by photoperiod // inferred from sequence or structural similarity /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from sequence or structural similarity /// 0001191 // RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0043426 // MRF binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from direct assay -311.95 366.80 -8.49 0.00 0.00 -4.43
213726_x_at 213726_x_at AA515698 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA515698 /FEA=EST /DB_XREF=gi:2255298 /DB_XREF=est:nf66f09.s1 /CLONE=IMAGE:924905 /UG=Hs.251653 tubulin, beta, 2 AA515698 tubulin, beta 4B class IVb TUBB4B 10383 NM_006088 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0042267 // natural killer cell mediated cytotoxicity // non-traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // traceable author statement /// 0051082 // unfolded protein binding // non-traceable author statement 701.42 1428.56 8.48 0.00 0.00 -4.43
205572_at 205572_at NM_001147 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001147.1 /DEF=Homo sapiens angiopoietin 2 (ANGPT2), mRNA. /FEA=mRNA /GEN=ANGPT2 /PROD=angiopoietin 2 /DB_XREF=gi:4557314 /UG=Hs.115181 angiopoietin 2 /FL=gb:AF004327.1 gb:NM_001147.1 gb:AB009865.1 NM_001147 angiopoietin 2 ANGPT2 285 NM_001118887 /// NM_001118888 /// NM_001147 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009314 // response to radiation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0010812 // negative regulation of cell-substrate adhesion // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0048014 // Tie signaling pathway // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0050928 // negative regulation of positive chemotaxis // inferred from direct assay /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0072012 // glomerulus vasculature development // inferred from sequence or structural similarity 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 91.38 162.01 8.48 0.00 0.00 -4.43
200895_s_at 200895_s_at NM_002014 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002014.1 /DEF=Homo sapiens FK506-binding protein 4 (59kD) (FKBP4), mRNA. /FEA=mRNA /GEN=FKBP4 /PROD=FK506-binding protein 4 (59kD) /DB_XREF=gi:4503728 /UG=Hs.848 FK506-binding protein 4 (59kD) /FL=gb:BC001786.1 gb:M88279.1 gb:NM_002014.1 NM_002014 FK506 binding protein 4, 59kDa FKBP4 2288 NM_002014 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0006463 // steroid hormone receptor complex assembly // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from sequence or structural similarity /// 0018208 // peptidyl-proline modification // /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0030850 // prostate gland development // inferred from electronic annotation /// 0031111 // negative regulation of microtubule polymerization or depolymerization // inferred from sequence or structural similarity /// 0031115 // negative regulation of microtubule polymerization // inferred from electronic annotation /// 0031503 // protein complex localization // inferred from electronic annotation /// 0046661 // male sex differentiation // inferred from electronic annotation /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // inferred from direct assay 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0044295 // axonal growth cone // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005528 // FK506 binding // not recorded /// 0005528 // FK506 binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // traceable author statement /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0032767 // copper-dependent protein binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048156 // tau protein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from electronic annotation 101.65 167.95 8.47 0.00 0.00 -4.43
209025_s_at 209025_s_at AF037448 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF037448.1 /DEF=Homo sapiens RRM RNA binding protein Gry-rbp (GRY-RBP) mRNA, complete cds. /FEA=mRNA /GEN=GRY-RBP /PROD=Gry-rbp /DB_XREF=gi:3037012 /UG=Hs.155489 NS1-associated protein 1 /FL=gb:AF037448.1 AF037448 synaptotagmin binding, cytoplasmic RNA interacting protein SYNCRIP 10492 NM_001159673 /// NM_001159674 /// NM_001159675 /// NM_001159676 /// NM_001159677 /// NM_001253771 /// NM_006372 /// XM_005248635 /// XM_005248636 /// XM_005248637 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity /// 0097452 // GAIT complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 176.63 374.44 8.44 0.00 0.00 -4.43
212215_at 212215_at AB007896 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB007896.1 /DEF=Homo sapiens KIAA0436 mRNA, partial cds. /FEA=mRNA /GEN=KIAA0436 /DB_XREF=gi:2662152 /UG=Hs.110 putative L-type neutral amino acid transporter AB007896 prolyl endopeptidase-like PREPL 9581 NM_001042385 /// NM_001042386 /// NM_001171603 /// NM_001171606 /// NM_001171613 /// NM_001171617 /// NM_006036 /// XM_005264653 /// XM_005264654 /// XM_005264655 /// XM_005264657 /// XM_005264658 /// XM_005264659 /// XM_005264660 /// XM_006712151 /// XM_006712152 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070008 // serine-type exopeptidase activity // inferred from electronic annotation 86.03 71.99 8.43 0.00 0.00 -4.43
200813_s_at 200813_s_at BE256969 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE256969 /FEA=EST /DB_XREF=gi:9127437 /DB_XREF=est:601112157F1 /CLONE=IMAGE:3352623 /UG=Hs.77318 platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) /FL=gb:L13385.1 gb:L13386.1 gb:NM_000430.2 BE256969 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) PAFAH1B1 5048 NM_000430 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0000278 // mitotic cell cycle // traceable author statement /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001675 // acrosome assembly // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0008090 // retrograde axon cargo transport // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from mutant phenotype /// 0009306 // protein secretion // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0017145 // stem cell division // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // inferred from sequence or structural similarity /// 0021540 // corpus callosum morphogenesis // inferred from mutant phenotype /// 0021766 // hippocampus development // inferred from sequence or structural similarity /// 0021819 // layer formation in cerebral cortex // inferred from sequence or structural similarity /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from mutant phenotype /// 0032319 // regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0036035 // osteoclast development // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046469 // platelet activating factor metabolic process // inferred from sequence or structural similarity /// 0047496 // vesicle transport along microtubule // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from mutant phenotype /// 0050885 // neuromuscular process controlling balance // inferred from mutant phenotype /// 0051081 // nuclear envelope disassembly // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051660 // establishment of centrosome localization // inferred from electronic annotation 0000235 // astral microtubule // inferred from direct assay /// 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0031512 // motile primary cilium // inferred from sequence or structural similarity /// 0031513 // nonmotile primary cilium // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0034452 // dynactin binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043274 // phospholipase binding // inferred from sequence or structural similarity /// 0045502 // dynein binding // inferred from direct assay /// 0045505 // dynein intermediate chain binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from sequence or structural similarity 85.92 183.26 8.42 0.00 0.00 -4.43
202770_s_at 202770_s_at NM_004354 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004354.1 /DEF=Homo sapiens cyclin G2 (CCNG2), mRNA. /FEA=mRNA /GEN=CCNG2 /PROD=cyclin G2 /DB_XREF=gi:4757935 /UG=Hs.79069 cyclin G2 /FL=gb:U47414.1 gb:NM_004354.1 NM_004354 cyclin G2 CCNG2 901 NM_004354 0000075 // cell cycle checkpoint // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation -147.00 115.30 -8.40 0.00 0.00 -4.43
210891_s_at 210891_s_at AF035737 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF035737.1 /DEF=Homo sapiens general transcription factor 2-I (GTF2I) mRNA, complete cds. /FEA=mRNA /GEN=GTF2I /PROD=general transcription factor 2-I; alternativesplice product /DB_XREF=gi:2827179 /UG=Hs.278589 general transcription factor II, i /FL=gb:AF035737.1 AF035737 general transcription factor IIi /// general transcription factor IIi, pseudogene 1 /// general transcription factor II, i, pseudogene GTF2I /// GTF2IP1 /// LOC100093631 2969 /// 2970 /// 100093631 NM_001163636 /// NM_001280800 /// NM_001518 /// NM_032999 /// NM_033000 /// NM_033001 /// NR_002206 /// NR_003580 /// XM_005250291 /// XM_005250296 /// XM_006715939 /// XM_006715940 /// XM_006715941 /// XM_006715942 /// XM_006715943 /// XM_006715944 /// XM_006715945 /// XM_006715946 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0051481 // negative regulation of cytosolic calcium ion concentration // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0051019 // mitogen-activated protein kinase binding // inferred from electronic annotation 275.92 336.44 8.38 0.00 0.00 -4.43
202133_at 202133_at BF674349 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF674349 /FEA=EST /DB_XREF=gi:11948244 /DB_XREF=est:602137094F1 /CLONE=IMAGE:4273679 /UG=Hs.24341 transcriptional co-activator with PDZ-binding motif (TAZ) /FL=gb:NM_015472.1 BF674349 WW domain containing transcription regulator 1 WWTR1 25937 NM_001168278 /// NM_001168280 /// NM_015472 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0017145 // stem cell division // inferred from direct assay /// 0032835 // glomerulus development // inferred from electronic annotation /// 0035329 // hippo signaling // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement /// 0035414 // negative regulation of catenin import into nucleus // inferred from mutant phenotype /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0060271 // cilium morphogenesis // inferred from electronic annotation /// 0060390 // regulation of SMAD protein import into nucleus // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation 324.18 600.96 8.36 0.00 0.00 -4.43
204326_x_at 204326_x_at NM_002450 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002450.1 /DEF=Homo sapiens metallothionein 1L (MT1L), mRNA. /FEA=mRNA /GEN=MT1L /PROD=metallothionein 1L /DB_XREF=gi:4505270 /UG=Hs.94360 metallothionein 1L /FL=gb:NM_002450.1 NM_002450 metallothionein 1X MT1X 4501 NM_005952 0010038 // response to metal ion // traceable author statement /// 0036018 // cellular response to erythropoietin // inferred from expression pattern /// 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // traceable author statement -390.75 724.20 -8.36 0.00 0.00 -4.43
53968_at 53968_at AI869988 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI869988:wl63e02.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2429594 /clone_end=3' /gb=AI869988 /gi=5543956 /ug=Hs.6259 /len=541 AI869988 integrator complex subunit 5 INTS5 80789 NM_030628 0016180 // snRNA processing // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032039 // integrator complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 74.10 92.22 8.36 0.00 0.00 -4.43
202766_s_at 202766_s_at NM_000138 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000138.1 /DEF=Homo sapiens fibrillin 1 (Marfan syndrome) (FBN1), mRNA. /FEA=mRNA /GEN=FBN1 /PROD=fibrillin 1 /DB_XREF=gi:4557590 /UG=Hs.750 fibrillin 1 (Marfan syndrome) /FL=gb:L13923.1 gb:NM_000138.1 NM_000138 fibrillin 1 FBN1 2200 NM_000138 0001501 // skeletal system development // inferred from mutant phenotype /// 0001822 // kidney development // inferred from electronic annotation /// 0007507 // heart development // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0035582 // sequestering of BMP in extracellular matrix // inferred from sequence or structural similarity /// 0035583 // sequestering of TGFbeta in extracellular matrix // inferred from sequence or structural similarity 0001527 // microfibril // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -189.42 359.79 -8.35 0.00 0.00 -4.43
202976_s_at 202976_s_at NM_014899 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014899.1 /DEF=Homo sapiens KIAA0878 protein (KIAA0878), mRNA. /FEA=mRNA /GEN=KIAA0878 /PROD=KIAA0878 protein /DB_XREF=gi:7662355 /UG=Hs.188006 KIAA0878 protein /FL=gb:AB020685.1 gb:NM_014899.1 NM_014899 Rho-related BTB domain containing 3 RHOBTB3 22836 NM_014899 0006200 // ATP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from physical interaction 91.72 111.61 8.35 0.00 0.00 -4.43
202126_at 202126_at AA156948 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA156948 /FEA=EST /DB_XREF=gi:1728563 /DB_XREF=est:zl19f02.s1 /CLONE=IMAGE:502395 /UG=Hs.198891 serinethreonine-protein kinase PRP4 homolog /FL=gb:U48736.1 gb:NM_003913.1 AA156948 pre-mRNA processing factor 4B PRPF4B 8899 NM_003913 /// NM_176800 /// XM_006715238 /// XR_241936 /// XR_241940 /// XR_241944 /// XR_241945 /// XR_241947 /// XR_241948 /// XR_241949 /// XR_427838 /// XR_427839 /// XR_427840 /// XR_427841 /// XR_427842 /// XR_427843 /// XR_427844 /// XR_427845 /// XR_427846 /// XR_427847 /// XR_427848 /// XR_427849 /// XR_427850 /// XR_427851 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 118.85 115.28 8.34 0.00 0.00 -4.43
200988_s_at 200988_s_at NM_005789 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005789.1 /DEF=Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), mRNA. /FEA=mRNA /GEN=PSME3 /PROD=proteasome (prosome, macropain) activatorsubunit 3 (PA28 gamma; Ki) /DB_XREF=gi:5031996 /UG=Hs.152978 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) /FL=gb:NM_005789.1 gb:U11292.1 NM_005789 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) PSME3 10197 NM_001267045 /// NM_005789 /// NM_176863 /// NR_049772 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010950 // positive regulation of endopeptidase activity // inferred from direct assay /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0061136 // regulation of proteasomal protein catabolic process // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008537 // proteasome activator complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0002039 // p53 binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0061133 // endopeptidase activator activity // inferred from direct assay /// 0097371 // MDM2/MDM4 family protein binding // inferred from direct assay 80.40 67.42 8.34 0.00 0.00 -4.43
202613_at 202613_at NM_001905 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001905.1 /DEF=Homo sapiens CTP synthase (CTPS), mRNA. /FEA=mRNA /GEN=CTPS /PROD=CTP synthase /DB_XREF=gi:4503132 /UG=Hs.251871 CTP synthase /FL=gb:NM_001905.1 NM_001905 CTP synthase 1 CTPS1 1503 NM_001905 /// XM_005270536 /// XM_006710390 /// XM_006710391 /// XR_426589 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from direct assay /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0042493 // response to drug // traceable author statement /// 0044210 // 'de novo' CTP biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003883 // CTP synthase activity // not recorded /// 0003883 // CTP synthase activity // inferred from direct assay /// 0003883 // CTP synthase activity // inferred from genetic interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 96.25 121.35 8.34 0.00 0.00 -4.43
201169_s_at 201169_s_at BG326045 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG326045 /FEA=EST /DB_XREF=gi:13132482 /DB_XREF=est:602424821F1 /CLONE=IMAGE:4562789 /UG=Hs.171825 basic helix-loop-helix domain containing, class B, 2 /FL=gb:AB004066.1 gb:NM_003670.1 BG326045 basic helix-loop-helix family, member e40 BHLHE40 8553 NM_003670 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from direct assay /// 0043153 // entrainment of circadian clock by photoperiod // inferred from sequence or structural similarity /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from sequence or structural similarity /// 0001191 // RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0043426 // MRF binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from direct assay -94.38 84.94 -8.32 0.00 0.00 -4.43
204521_at 204521_at NM_013300 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013300.1 /DEF=Homo sapiens protein predicted by clone 23733 (HSU79274), mRNA. /FEA=mRNA /GEN=HSU79274 /PROD=protein predicted by clone 23733 /DB_XREF=gi:9558740 /UG=Hs.150555 protein predicted by clone 23733 /FL=gb:U79274.1 gb:NM_013300.1 NM_013300 family with sequence similarity 216, member A FAM216A 29902 NM_013300 /// XM_005253875 66.60 102.38 8.30 0.00 0.00 -4.43
215171_s_at 215171_s_at AK023063 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023063.1 /DEF=Homo sapiens cDNA FLJ13001 fis, clone NT2RP3000341, highly similar to Homo sapiens mitochondrial inner membrane preprotein translocase Tim17a mRNA, nuclear gene encoding mitochondrial protein. /FEA=mRNA /DB_XREF=gi:10434808 /UG=Hs.20716 translocase of inner mitochondrial membrane 17 (yeast) homolog A AK023063 translocase of inner mitochondrial membrane 17 homolog A (yeast) TIMM17A 10440 NM_006335 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071806 // protein transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031305 // integral component of mitochondrial inner membrane // inferred from direct assay 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation 240.10 491.48 8.25 0.00 0.00 -4.43
212398_at 212398_at AI057093 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI057093 /FEA=EST /DB_XREF=gi:3330969 /DB_XREF=est:oz23e12.x1 /CLONE=IMAGE:1676206 /UG=Hs.263671 Homo sapiens mRNA; cDNA DKFZp434I0812 (from clone DKFZp434I0812); partial cds AI057093 radixin RDX 5962 NM_001260492 /// NM_001260493 /// NM_001260494 /// NM_001260495 /// NM_001260496 /// NM_002906 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from genetic interaction /// 0030033 // microvillus assembly // inferred from electronic annotation /// 0045176 // apical protein localization // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation /// 0061028 // establishment of endothelial barrier // inferred from genetic interaction 0001726 // ruffle // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030315 // T-tubule // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0032420 // stereocilium // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0051286 // cell tip // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -145.77 308.14 -8.23 0.00 0.00 -4.43
212787_at 212787_at AI952986 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI952986 /FEA=EST /DB_XREF=gi:5745296 /DB_XREF=est:wp98b10.x1 /CLONE=IMAGE:2469787 /UG=Hs.159471 ZAP3 protein AI952986 YLP motif containing 1 YLPM1 56252 NM_019589 /// XM_005267860 /// XR_245704 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0032204 // regulation of telomere maintenance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 116.80 199.83 8.23 0.00 0.00 -4.43
203045_at 203045_at NM_004148 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004148.1 /DEF=Homo sapiens ninjurin 1 (NINJ1), mRNA. /FEA=mRNA /GEN=NINJ1 /PROD=ninjurin 1 /DB_XREF=gi:4758809 /UG=Hs.11342 ninjurin 1 /FL=gb:BC004440.1 gb:U72661.1 gb:U91512.1 gb:NM_004148.1 NM_004148 ninjurin 1 NINJ1 4814 NM_004148 0007155 // cell adhesion // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0042246 // tissue regeneration // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -146.52 163.81 -8.22 0.00 0.00 -4.43
200816_s_at 200816_s_at NM_000430 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000430.2 /DEF=Homo sapiens platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) (PAFAH1B1), mRNA. /FEA=mRNA /GEN=PAFAH1B1 /PROD=platelet-activating factor acetylhydrolase,isoform Ib, alpha subunit (45kD) /DB_XREF=gi:6031206 /UG=Hs.77318 platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) /FL=gb:L13385.1 gb:L13386.1 gb:NM_000430.2 NM_000430 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) PAFAH1B1 5048 NM_000430 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0000278 // mitotic cell cycle // traceable author statement /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001675 // acrosome assembly // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0008090 // retrograde axon cargo transport // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from mutant phenotype /// 0009306 // protein secretion // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0017145 // stem cell division // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // inferred from sequence or structural similarity /// 0021540 // corpus callosum morphogenesis // inferred from mutant phenotype /// 0021766 // hippocampus development // inferred from sequence or structural similarity /// 0021819 // layer formation in cerebral cortex // inferred from sequence or structural similarity /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from mutant phenotype /// 0032319 // regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0036035 // osteoclast development // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046469 // platelet activating factor metabolic process // inferred from sequence or structural similarity /// 0047496 // vesicle transport along microtubule // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from mutant phenotype /// 0050885 // neuromuscular process controlling balance // inferred from mutant phenotype /// 0051081 // nuclear envelope disassembly // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051660 // establishment of centrosome localization // inferred from electronic annotation 0000235 // astral microtubule // inferred from direct assay /// 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0031512 // motile primary cilium // inferred from sequence or structural similarity /// 0031513 // nonmotile primary cilium // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0034452 // dynactin binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043274 // phospholipase binding // inferred from sequence or structural similarity /// 0045502 // dynein binding // inferred from direct assay /// 0045505 // dynein intermediate chain binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from sequence or structural similarity 236.30 308.20 8.22 0.00 0.00 -4.43
208712_at 208712_at M73554 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M73554.1 /DEF=Human bcl-1 mRNA, complete CDS. /FEA=mRNA /GEN=bcl-1 /PROD=bcl-1 /DB_XREF=gi:179364 /UG=Hs.82932 cyclin D1 (PRAD1: parathyroid adenomatosis 1) /FL=gb:BC000076.1 gb:M73554.1 M73554 cyclin D1 CCND1 595 NM_053056 /// XM_006718653 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // inferred from direct assay /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0000320 // re-entry into mitotic cell cycle // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0007595 // lactation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from direct assay /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031571 // mitotic G1 DNA damage checkpoint // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033601 // positive regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0070141 // response to UV-A // inferred from direct assay /// 0071157 // negative regulation of cell cycle arrest // inferred from direct assay /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 2000045 // regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from direct assay /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from direct assay 0003714 // transcription corepressor activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein serine/threonine kinase regulator activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0070064 // proline-rich region binding // inferred from direct assay 194.03 235.34 8.22 0.00 0.00 -4.43
206429_at 206429_at NM_005242 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005242.2 /DEF=Homo sapiens coagulation factor II (thrombin) receptor-like 1 (F2RL1), mRNA. /FEA=mRNA /GEN=F2RL1 /PROD=coagulation factor II (thrombin) receptor-like 1precursor /DB_XREF=gi:8051581 /UG=Hs.154299 coagulation factor II (thrombin) receptor-like 1 /FL=gb:U34038.1 gb:NM_005242.2 NM_005242 coagulation factor II (thrombin) receptor-like 1 F2RL1 2150 NM_005242 0002286 // T cell activation involved in immune response // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0002690 // positive regulation of leukocyte chemotaxis // inferred from direct assay /// 0002741 // positive regulation of cytokine secretion involved in immune response // inferred from direct assay /// 0003104 // positive regulation of glomerular filtration // inferred from sequence or structural similarity /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007596 // blood coagulation // inferred from electronic annotation /// 0010804 // negative regulation of tumor necrosis factor-mediated signaling pathway // inferred from direct assay /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from sequence or structural similarity /// 0030193 // regulation of blood coagulation // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0030836 // positive regulation of actin filament depolymerization // inferred from direct assay /// 0031274 // positive regulation of pseudopodium assembly // inferred from sequence or structural similarity /// 0032930 // positive regulation of superoxide anion generation // inferred from direct assay /// 0034137 // positive regulation of toll-like receptor 2 signaling pathway // inferred from mutant phenotype /// 0034140 // negative regulation of toll-like receptor 3 signaling pathway // inferred from mutant phenotype /// 0034141 // positive regulation of toll-like receptor 3 signaling pathway // inferred from mutant phenotype /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from direct assay /// 0035025 // positive regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035025 // positive regulation of Rho protein signal transduction // inferred from sequence or structural similarity /// 0035926 // chemokine (C-C motif) ligand 2 secretion // inferred from direct assay /// 0042119 // neutrophil activation // inferred from direct assay /// 0043122 // regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043311 // positive regulation of eosinophil degranulation // inferred from direct assay /// 0045087 // innate immune response // inferred from electronic annotation /// 0045909 // positive regulation of vasodilation // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046328 // regulation of JNK cascade // inferred from direct assay /// 0046329 // negative regulation of JNK cascade // inferred from direct assay /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0050702 // interleukin-1 beta secretion // inferred from direct assay /// 0050900 // leukocyte migration // inferred from direct assay /// 0050921 // positive regulation of chemotaxis // inferred from sequence or structural similarity /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0051607 // defense response to virus // inferred from direct assay /// 0060100 // positive regulation of phagocytosis, engulfment // inferred from direct assay /// 0061028 // establishment of endothelial barrier // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070493 // thrombin receptor signaling pathway // inferred from electronic annotation /// 0070661 // leukocyte proliferation // inferred from sequence or structural similarity /// 0070963 // positive regulation of neutrophil mediated killing of gram-negative bacterium // inferred from direct assay /// 0072608 // interleukin-10 secretion // inferred from direct assay /// 0072643 // interferon-gamma secretion // inferred from sequence or structural similarity /// 0090195 // chemokine secretion // inferred from direct assay /// 0090198 // negative regulation of chemokine secretion // inferred from direct assay /// 0097029 // mature dendritic cell differentiation // inferred from direct assay /// 0097029 // mature dendritic cell differentiation // inferred from sequence or structural similarity /// 1900135 // positive regulation of renin secretion into blood stream // inferred from sequence or structural similarity /// 2000484 // positive regulation of interleukin-8 secretion // inferred from direct assay /// 2000778 // positive regulation of interleukin-6 secretion // inferred from direct assay 0005794 // Golgi apparatus // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031143 // pseudopodium // inferred from sequence or structural similarity 0001965 // G-protein alpha-subunit binding // inferred from sequence or structural similarity /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0015057 // thrombin receptor activity // inferred from electronic annotation /// 0031681 // G-protein beta-subunit binding // inferred from sequence or structural similarity -301.97 300.59 -8.22 0.00 0.00 -4.43
202361_at 202361_at NM_004922 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004922.1 /DEF=Homo sapiens SEC24 (S. cerevisiae) related gene family, member C (SEC24C), mRNA. /FEA=mRNA /GEN=SEC24C /PROD=SEC24 (S. cerevisiae) related gene family,member C /DB_XREF=gi:4758633 /UG=Hs.81964 SEC24 (S. cerevisiae) related gene family, member C /FL=gb:NM_004922.1 gb:D38555.1 NM_004922 SEC24 family member C SEC24C 9632 NM_004922 /// NM_198597 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // non-traceable author statement /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030127 // COPII vesicle coat // non-traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation 107.78 177.96 8.21 0.00 0.00 -4.43
212828_at 212828_at AA191573 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA191573 /FEA=EST /DB_XREF=gi:1780272 /DB_XREF=est:zp81b09.s1 /CLONE=IMAGE:626585 /UG=Hs.61289 synaptojanin 2 AA191573 synaptojanin 2 SYNJ2 8871 NM_001178088 /// NM_003898 /// XM_005267197 /// XM_005267198 /// XM_005267199 /// XM_005267200 /// XM_006715591 /// XM_006715592 /// XR_245556 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046856 // phosphatidylinositol dephosphorylation // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042578 // phosphoric ester hydrolase activity // inferred from electronic annotation -333.90 500.03 -8.20 0.00 0.00 -4.43
221493_at 221493_at AL136629 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136629.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564D152 (from clone DKFZp564D152); complete cds. /FEA=mRNA /GEN=DKFZp564D152 /PROD=hypothetical protein /DB_XREF=gi:12052783 /UG=Hs.278479 TSPY-like /FL=gb:AL136629.1 AL136629 TSPY-like 1 TSPYL1 7259 NM_003309 0005975 // carbohydrate metabolic process // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // inferred from electronic annotation /// 0030208 // dermatan sulfate biosynthetic process // inferred from direct assay /// 0030208 // dermatan sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016853 // isomerase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0047757 // chondroitin-glucuronate 5-epimerase activity // inferred from direct assay /// 0047757 // chondroitin-glucuronate 5-epimerase activity // inferred from electronic annotation 163.02 233.86 8.20 0.00 0.00 -4.43
215101_s_at 215101_s_at BG166705 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG166705 /FEA=EST /DB_XREF=gi:12673408 /DB_XREF=est:602339217F1 /CLONE=IMAGE:4447013 /UG=Hs.89714 small inducible cytokine subfamily B (Cys-X-Cys), member 5 (epithelial-derived neutrophil-activating peptide 78) BG166705 chemokine (C-X-C motif) ligand 5 CXCL5 6374 NM_002994 0006935 // chemotaxis // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060326 // cell chemotaxis // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation -116.45 62.95 -8.20 0.00 0.00 -4.43
221479_s_at 221479_s_at AF060922 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF060922.1 /DEF=Homo sapiens clone 016a05 My020 protein mRNA, complete cds. /FEA=mRNA /PROD=My020 protein /DB_XREF=gi:12001981 /UG=Hs.132955 BCL2adenovirus E1B 19kD-interacting protein 3-like /FL=gb:AF060922.1 gb:AB004788.1 gb:AF067396.1 gb:NM_004331.1 gb:AL132665.1 AF060922 BCL2/adenovirus E1B 19kDa interacting protein 3-like BNIP3L 665 NM_004331 /// XM_005273617 0006915 // apoptotic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0035694 // mitochondrial protein catabolic process // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0051607 // defense response to virus // inferred from direct assay /// 0097345 // mitochondrial outer membrane permeabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0005521 // lamin binding // inferred from direct assay /// 0005521 // lamin binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay -284.07 473.89 -8.20 0.00 0.00 -4.43
213508_at 213508_at AA142942 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA142942 /FEA=EST /DB_XREF=gi:1712320 /DB_XREF=est:zl43c04.s1 /CLONE=IMAGE:504678 /UG=Hs.241507 ribosomal protein S6 AA142942 serine palmitoyltransferase, small subunit A SPTSSA 171546 NM_138288 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0017059 // serine C-palmitoyltransferase complex // inferred from direct assay 0004758 // serine C-palmitoyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 69.15 75.17 8.20 0.00 0.00 -4.43
209797_at 209797_at BC001027 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001027.1 /DEF=Homo sapiens, transmembrane protein 4, clone MGC:1545, mRNA, complete cds. /FEA=mRNA /PROD=transmembrane protein 4 /DB_XREF=gi:12654402 /UG=Hs.8752 transmembrane protein 4 /FL=gb:BC001027.1 gb:AF186113.1 BC001027 canopy FGF signaling regulator 2 CNPY2 10330 NM_001190991 /// NM_014255 0010629 // negative regulation of gene expression // inferred from sequence or structural similarity /// 0010988 // regulation of low-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0045716 // positive regulation of low-density lipoprotein particle receptor biosynthetic process // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction 72.38 98.24 8.20 0.00 0.00 -4.43
213476_x_at 213476_x_at AL565749 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL565749 /FEA=EST /DB_XREF=gi:12917434 /DB_XREF=est:AL565749 /CLONE=CS0DF007YJ03 (3 prime) /UG=Hs.159154 tubulin, beta, 4 AL565749 tubulin, beta 3 class III TUBB3 10381 NM_001197181 /// NM_006086 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // inferred from mutant phenotype /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 380.62 1041.46 8.20 0.00 0.00 -4.43
204779_s_at 204779_s_at NM_004502 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004502.1 /DEF=Homo sapiens homeo box B7 (HOXB7), mRNA. /FEA=mRNA /GEN=HOXB7 /PROD=homeo box B7 /DB_XREF=gi:4758551 /UG=Hs.819 homeo box B7 /FL=gb:M16937.1 gb:NM_004502.1 NM_004502 homeobox B7 HOXB7 3217 NM_004502 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0007275 // multicellular organismal development // non-traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 102.60 180.30 8.18 0.00 0.00 -4.43
214853_s_at 214853_s_at AI091079 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI091079 /FEA=EST /DB_XREF=gi:3430138 /DB_XREF=est:qa53e05.s1 /CLONE=IMAGE:1690496 /UG=Hs.81972 SHC (Src homology 2 domain-containing) transforming protein 1 AI091079 SHC (Src homology 2 domain containing) transforming protein 1 SHC1 6464 NM_001130040 /// NM_001130041 /// NM_001202859 /// NM_003029 /// NM_183001 /// XM_005245449 /// XM_005245450 /// XM_005245451 /// XM_005245452 0000165 // MAPK cascade // inferred from direct assay /// 0000187 // activation of MAPK activity // inferred from direct assay /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007176 // regulation of epidermal growth factor-activated receptor activity // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // non-traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from sequence or structural similarity /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050900 // leukocyte migration // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0070435 // Shc-EGFR complex // inferred from sequence or structural similarity 0004713 // protein tyrosine kinase activity // traceable author statement /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor activity // traceable author statement /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005159 // insulin-like growth factor receptor binding // inferred from physical interaction /// 0005168 // neurotrophin TRKA receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // traceable author statement /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from physical interaction 468.47 1088.16 8.17 0.00 0.00 -4.43
217725_x_at 217725_x_at NM_015640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015640.1 /DEF=Homo sapiens PAI-1 mRNA-binding protein (PAI-RBP1), mRNA. /FEA=mRNA /GEN=PAI-RBP1 /PROD=PAI-1 mRNA-binding protein /DB_XREF=gi:7661625 /UG=Hs.165998 PAI-1 mRNA-binding protein /FL=gb:AL080119.1 gb:NM_015640.1 NM_015640 SERPINE1 mRNA binding protein 1 SERBP1 26135 NM_001018067 /// NM_001018068 /// NM_001018069 /// NM_015640 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 168.20 606.45 8.16 0.00 0.00 -4.43
212322_at 212322_at BE999972 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE999972 /FEA=EST /DB_XREF=gi:10700248 /DB_XREF=est:7h15b02.x1 /CLONE=IMAGE:3316011 /UG=Hs.186613 sphingosine-1-phosphate lyase 1 /FL=gb:AF144638.1 BE999972 sphingosine-1-phosphate lyase 1 SGPL1 8879 NM_003901 /// XM_005270263 /// XM_006718052 /// XM_006718053 0001553 // luteinization // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006672 // ceramide metabolic process // inferred from direct assay /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0030149 // sphingolipid catabolic process // non-traceable author statement /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0097194 // execution phase of apoptosis // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // non-traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008117 // sphinganine-1-phosphate aldolase activity // inferred from direct assay /// 0008117 // sphinganine-1-phosphate aldolase activity // non-traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation -102.42 146.24 -8.15 0.00 0.00 -4.43
212075_s_at 212075_s_at AI161318 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI161318 /FEA=EST /DB_XREF=gi:3694562 /DB_XREF=est:qb66g02.x1 /CLONE=IMAGE:1705106 /UG=Hs.155140 casein kinase 2, alpha 1 polypeptide AI161318 casein kinase 2, alpha 1 polypeptide CSNK2A1 1457 NM_001895 /// NM_177559 /// NM_177560 /// XM_006723548 0000278 // mitotic cell cycle // traceable author statement /// 0001558 // regulation of cell growth // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // traceable author statement /// 0071174 // mitotic spindle checkpoint // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005956 // protein kinase CK2 complex // traceable author statement /// 0016580 // Sin3 complex // inferred from direct assay /// 0016581 // NuRD complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019888 // protein phosphatase regulator activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051879 // Hsp90 protein binding // traceable author statement -87.92 174.44 -8.13 0.00 0.00 -4.43
204615_x_at 204615_x_at NM_004508 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004508.1 /DEF=Homo sapiens isopentenyl-diphosphate delta isomerase (IDI1), mRNA. /FEA=mRNA /GEN=IDI1 /PROD=isopentenyl-diphosphate delta isomerase /DB_XREF=gi:4758583 /UG=Hs.76038 isopentenyl-diphosphate delta isomerase /FL=gb:NM_004508.1 NM_004508 isopentenyl-diphosphate delta isomerase 1 IDI1 3422 NM_004508 /// XM_005252445 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0035634 // response to stilbenoid // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0050992 // dimethylallyl diphosphate biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000287 // magnesium ion binding // inferred from direct assay /// 0004452 // isopentenyl-diphosphate delta-isomerase activity // inferred from direct assay /// 0004452 // isopentenyl-diphosphate delta-isomerase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 88.05 112.08 8.12 0.00 0.00 -4.43
209146_at 209146_at AV704962 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV704962 /FEA=EST /DB_XREF=gi:10722273 /DB_XREF=est:AV704962 /CLONE=ADBALE09 /UG=Hs.239926 sterol-C4-methyl oxidase-like /FL=gb:U60205.1 gb:U93162.1 gb:NM_006745.2 AV704962 methylsterol monooxygenase 1 MSMO1 6307 NM_001017369 /// NM_006745 /// XM_005263176 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008202 // steroid metabolic process // traceable author statement /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000254 // C-4 methylsterol oxidase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 203.62 158.11 8.12 0.00 0.00 -4.43
207626_s_at 207626_s_at NM_003046 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003046.1 /DEF=Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 (SLC7A2), mRNA. /FEA=mRNA /GEN=SLC7A2 /PROD=solute carrier family 7 (cationic amino acidtransporter, y+ system), member 2 /DB_XREF=gi:4507048 /UG=Hs.153985 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 /FL=gb:U76368.1 gb:NM_003046.1 NM_003046 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 SLC7A2 6542 NM_001008539 /// NM_001164771 /// NM_003046 /// XM_005273609 /// XM_005273610 /// XM_005273611 /// XM_005273612 /// XM_006716389 0002537 // nitric oxide production involved in inflammatory response // inferred from electronic annotation /// 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0015807 // L-amino acid transport // inferred from electronic annotation /// 0015809 // arginine transport // inferred from electronic annotation /// 0015819 // lysine transport // inferred from electronic annotation /// 0015822 // ornithine transport // inferred from electronic annotation /// 0042116 // macrophage activation // inferred from electronic annotation /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 1902475 // L-alpha-amino acid transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0000064 // L-ornithine transmembrane transporter activity // inferred from electronic annotation /// 0005289 // high affinity arginine transmembrane transporter activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015174 // basic amino acid transmembrane transporter activity // traceable author statement /// 0015179 // L-amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation /// 0015189 // L-lysine transmembrane transporter activity // inferred from electronic annotation -404.90 235.35 -8.11 0.00 0.00 -4.43
213419_at 213419_at U62325 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U62325.1 /DEF=Human FE65-like protein (hFE65L) mRNA, partial cds. /FEA=mRNA /GEN=hFE65L /PROD=FE65-like protein /DB_XREF=gi:1657751 /UG=Hs.324125 amyloid beta (A4) precursor protein-binding, family B, member 2 (Fe65-like) U62325 amyloid beta (A4) precursor protein-binding, family B, member 2 APBB2 323 NM_001166050 /// NM_001166051 /// NM_001166052 /// NM_001166053 /// NM_001166054 /// NM_004307 /// NM_173075 /// XM_005248101 /// XM_006714005 /// XM_006714006 /// XM_006714007 /// XM_006714008 /// XM_006714009 /// XM_006714010 /// XM_006714011 /// XM_006714012 0001764 // neuron migration // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007411 // axon guidance // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from sequence or structural similarity 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from sequence or structural similarity -93.87 127.79 -8.10 0.00 0.00 -4.43
201471_s_at 201471_s_at NM_003900 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003900.1 /DEF=Homo sapiens sequestosome 1 (SQSTM1), mRNA. /FEA=mRNA /GEN=SQSTM1 /PROD=sequestosome 1 /DB_XREF=gi:4505570 /UG=Hs.182248 sequestosome 1 /FL=gb:U41806.1 gb:BC003139.1 gb:U46751.1 gb:NM_003900.1 NM_003900 sequestosome 1 SQSTM1 8878 NM_001142298 /// NM_001142299 /// NM_003900 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006914 // autophagy // inferred from mutant phenotype /// 0006914 // autophagy // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0008104 // protein localization // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0016236 // macroautophagy // inferred from sequence or structural similarity /// 0016239 // positive regulation of macroautophagy // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043122 // regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0046578 // regulation of Ras protein signal transduction // non-traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016234 // inclusion body // inferred from direct assay /// 0016235 // aggresome // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004674 // protein serine/threonine kinase activity // non-traceable author statement /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0030971 // receptor tyrosine kinase binding // traceable author statement /// 0042169 // SH2 domain binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070530 // K63-linked polyubiquitin binding // inferred from electronic annotation -876.30 1023.15 -8.10 0.00 0.00 -4.43
202717_s_at 202717_s_at NM_003903 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003903.1 /DEF=Homo sapiens CDC16 (cell division cycle 16, S. cerevisiae, homolog) (CDC16), mRNA. /FEA=mRNA /GEN=CDC16 /PROD=CDC16 (cell division cycle 16, S. cerevisiae,homolog) /DB_XREF=gi:4502700 /UG=Hs.1592 CDC16 (cell division cycle 16, S. cerevisiae, homolog) /FL=gb:NM_003903.1 gb:U18291.1 NM_003903 cell division cycle 16 CDC16 8881 NM_001078645 /// NM_003903 /// XM_005266204 /// XM_005266206 /// XM_006719992 /// XM_006719993 /// XR_245358 /// XR_245359 /// XR_245360 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007088 // regulation of mitosis // traceable author statement /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 104.50 198.20 8.10 0.00 0.00 -4.43
208972_s_at 208972_s_at AL080089 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL080089.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564L2362 (from clone DKFZp564L2362); complete cds. /FEA=mRNA /GEN=DKFZp564L2362 /PROD=hypothetical protein /DB_XREF=gi:5262506 /UG=Hs.80986 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 /FL=gb:BC004963.1 gb:D13118.1 gb:AL080089.1 AL080089 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) ATP5G1 516 NM_001002027 /// NM_005175 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 87.90 185.05 8.09 0.00 0.00 -4.43
206618_at 206618_at NM_003855 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003855.1 /DEF=Homo sapiens interleukin 18 receptor 1 (IL18R1), mRNA. /FEA=mRNA /GEN=IL18R1 /PROD=interleukin 18 receptor 1 /DB_XREF=gi:4504654 /UG=Hs.159301 interleukin 18 receptor 1 /FL=gb:U43672.1 gb:NM_003855.1 NM_003855 interleukin 18 receptor 1 IL18R1 8809 NM_001282399 /// NM_003855 /// XM_005264039 /// XM_005264040 /// XM_006712823 0006955 // immune response // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0030101 // natural killer cell activation // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0035655 // interleukin-18-mediated signaling pathway // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0045063 // T-helper 1 cell differentiation // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042008 // interleukin-18 receptor activity // inferred from electronic annotation -149.35 86.30 -8.09 0.00 0.00 -4.43
209410_s_at 209410_s_at AF000017 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF000017.1 /DEF=Homo sapiens adapter protein (hGrb10zeta) mRNA, complete cds. /FEA=mRNA /GEN=hGrb10zeta /PROD=adapter protein /DB_XREF=gi:2130616 /UG=Hs.81875 growth factor receptor-bound protein 10 /FL=gb:D86962.1 gb:AF000017.1 AF000017 growth factor receptor-bound protein 10 GRB10 2887 NM_001001549 /// NM_001001550 /// NM_001001555 /// NM_005311 /// XM_005271760 /// XM_005271761 /// XM_005271765 /// XM_005271766 /// XM_005271767 /// XM_006715703 /// XM_006715704 /// XM_006715705 0007165 // signal transduction // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from direct assay /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0032868 // response to insulin // inferred from sequence or structural similarity /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from sequence or structural similarity /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from sequence or structural similarity /// 0046325 // negative regulation of glucose import // inferred from sequence or structural similarity /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation -82.70 162.70 -8.09 0.00 0.00 -4.43
206571_s_at 206571_s_at NM_004834 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004834.1 /DEF=Homo sapiens mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4), mRNA. /FEA=mRNA /GEN=MAP4K4 /PROD=mitogen-activated protein kinase kinase kinasekinase 4 /DB_XREF=gi:4758523 /UG=Hs.3628 mitogen-activated protein kinase kinase kinase kinase 4 /FL=gb:AF096300.1 gb:NM_004834.1 NM_004834 mitogen-activated protein kinase kinase kinase kinase 4 MAP4K4 9448 NM_001242559 /// NM_001242560 /// NM_004834 /// NM_145686 /// NM_145687 /// XM_005264044 /// XM_005264045 /// XM_005264046 /// XM_005264047 /// XM_005264048 /// XM_005264049 /// XM_005264050 /// XM_005264052 /// XM_005264053 /// XM_005264054 /// XM_005264055 /// XM_005264056 /// XM_005264057 /// XM_005264058 /// XM_005264059 /// XM_005264060 /// XM_005264061 /// XM_005264062 /// XM_005264063 /// XM_005264064 /// XM_005264065 /// XM_005264066 /// XM_005264068 /// XM_005264069 /// XM_005264071 /// XM_006712864 /// XM_006712865 /// XM_006712866 /// XM_006712867 /// XM_006712868 /// XM_006712869 0006468 // protein phosphorylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0046328 // regulation of JNK cascade // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -195.80 378.25 -8.07 0.00 0.00 -4.43
201433_s_at 201433_s_at NM_014754 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014754.1 /DEF=Homo sapiens phosphatidylserine synthase 1 (PTDSS1), mRNA. /FEA=mRNA /GEN=PTDSS1 /PROD=phosphatidylserine synthase 1 /DB_XREF=gi:7662646 /UG=Hs.77329 phosphatidylserine synthase 1 /FL=gb:BC004192.1 gb:BC004390.1 gb:D14694.1 gb:NM_014754.1 NM_014754 phosphatidylserine synthase 1 PTDSS1 9791 NM_001290225 /// NM_014754 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006659 // phosphatidylserine biosynthetic process // inferred from electronic annotation /// 0006659 // phosphatidylserine biosynthetic process // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016021 // integral component of membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation 186.45 402.05 8.06 0.00 0.00 -4.43
211071_s_at 211071_s_at BC006471 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006471.1 /DEF=Homo sapiens, ALL1-fused gene from chromosome 1q, clone MGC:4013, mRNA, complete cds. /FEA=mRNA /PROD=ALL1-fused gene from chromosome 1q /DB_XREF=gi:13623686 /FL=gb:BC006471.1 BC006471 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 MLLT11 10962 NM_006818 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051901 // positive regulation of mitochondrial depolarization // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097190 // apoptotic signaling pathway // inferred from electronic annotation /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay 0005622 // intracellular // inferred from direct assay 563.15 1224.90 8.06 0.00 0.00 -4.43
201849_at 201849_at NM_004052 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004052.2 /DEF=Homo sapiens BCL2adenovirus E1B 19kD-interacting protein 3 (BNIP3), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=BNIP3 /PROD=BCL2adenovirus E1B 19kD-interacting protein 3 /DB_XREF=gi:7669480 /UG=Hs.79428 BCL2adenovirus E1B 19kD-interacting protein 3 /FL=gb:AF002697.1 gb:U15174.1 gb:NM_004052.2 NM_004052 BCL2/adenovirus E1B 19kDa interacting protein 3 BNIP3 664 NM_004052 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0006309 // apoptotic DNA fragmentation // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006915 // apoptotic process // inferred from physical interaction /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008626 // granzyme-mediated apoptotic signaling pathway // inferred from direct assay /// 0010508 // positive regulation of autophagy // traceable author statement /// 0010637 // negative regulation of mitochondrial fusion // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0035694 // mitochondrial protein catabolic process // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043068 // positive regulation of programmed cell death // inferred from direct assay /// 0043243 // positive regulation of protein complex disassembly // inferred from direct assay /// 0043653 // mitochondrial fragmentation involved in apoptotic process // inferred from direct assay /// 0045837 // negative regulation of membrane potential // inferred from direct assay /// 0046902 // regulation of mitochondrial membrane permeability // inferred from direct assay /// 0048102 // autophagic cell death // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from sequence or structural similarity /// 0051607 // defense response to virus // inferred from direct assay /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071279 // cellular response to cobalt ion // inferred from mutant phenotype /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 0072593 // reactive oxygen species metabolic process // inferred from direct assay /// 0090141 // positive regulation of mitochondrial fission // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation /// 0097345 // mitochondrial outer membrane permeabilization // inferred from direct assay /// 1990144 // intrinsic apoptotic signaling pathway in response to hypoxia // inferred from mutant phenotype 0005634 // nucleus // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from direct assay /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0031307 // integral component of mitochondrial outer membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051020 // GTPase binding // inferred from physical interaction -541.30 465.98 -8.04 0.00 0.00 -4.43
203140_at 203140_at NM_001706 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001706.1 /DEF=Homo sapiens B-cell CLLlymphoma 6 (zinc finger protein 51) (BCL6), mRNA. /FEA=mRNA /GEN=BCL6 /PROD=B-cell CLLlymphoma 6 (zinc finger protein 51) /DB_XREF=gi:4502382 /UG=Hs.155024 B-cell CLLlymphoma 6 (zinc finger protein 51) /FL=gb:U00115.1 gb:NM_001706.1 NM_001706 B-cell CLL/lymphoma 6 BCL6 604 NM_001130845 /// NM_001134738 /// NM_001706 /// NM_138931 /// XM_005247694 0000060 // protein import into nucleus, translocation // inferred from genetic interaction /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001953 // negative regulation of cell-matrix adhesion // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002467 // germinal center formation // inferred from electronic annotation /// 0002634 // regulation of germinal center formation // non-traceable author statement /// 0002829 // negative regulation of type 2 immune response // inferred from electronic annotation /// 0002903 // negative regulation of B cell apoptotic process // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032764 // negative regulation of mast cell cytokine production // inferred from electronic annotation /// 0035024 // negative regulation of Rho protein signal transduction // inferred from electronic annotation /// 0042092 // type 2 immune response // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043380 // regulation of memory T cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045629 // negative regulation of T-helper 2 cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement /// 0048294 // negative regulation of isotype switching to IgE isotypes // inferred from electronic annotation /// 0048821 // erythrocyte development // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0050776 // regulation of immune response // non-traceable author statement /// 0051272 // positive regulation of cellular component movement // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005657 // replication fork // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -116.13 126.81 -8.04 0.00 0.00 -4.43
211564_s_at 211564_s_at BC003096 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003096.1 /DEF=Homo sapiens, Similar to LIM domain protein, clone MGC:1645, mRNA, complete cds. /FEA=mRNA /PROD=Similar to LIM domain protein /DB_XREF=gi:13111856 /UG=Hs.79691 LIM domain protein /FL=gb:BC003096.1 BC003096 PDZ and LIM domain 4 PDLIM4 8572 NM_001131027 /// NM_003687 /// XM_006714723 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -168.75 237.05 -8.03 0.00 0.00 -4.43
200644_at 200644_at NM_023009 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023009.1 /DEF=Homo sapiens macrophage myristoylated alanine-rich C kinase substrate (MACMARCKS), mRNA. /FEA=mRNA /GEN=MACMARCKS /PROD=macrophage myristoylated alanine-rich C kinasesubstrate /DB_XREF=gi:13491173 /UG=Hs.75061 macrophage myristoylated alanine-rich C kinase substrate /FL=gb:NM_023009.1 NM_023009 MARCKS-like 1 MARCKSL1 65108 NM_023009 /// NR_052852 0008284 // positive regulation of cell proliferation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation 297.40 1024.00 8.02 0.00 0.00 -4.43
210563_x_at 210563_x_at U97075 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U97075.1 /DEF=Homo sapiens FLICE-like inhibitory protein short form mRNA, complete cds. /FEA=mRNA /PROD=FLICE-like inhibitory protein short form /DB_XREF=gi:2253680 /UG=Hs.195175 CASP8 and FADD-like apoptosis regulator /FL=gb:U97075.1 U97075 CASP8 and FADD-like apoptosis regulator CFLAR 8837 NM_001127183 /// NM_001127184 /// NM_001202515 /// NM_001202516 /// NM_001202517 /// NM_001202518 /// NM_001202519 /// NM_003879 /// XM_005246935 /// XM_005246936 /// XM_005246937 /// XM_005246938 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0014732 // skeletal muscle atrophy // inferred from sequence or structural similarity /// 0014842 // regulation of satellite cell proliferation // inferred from sequence or structural similarity /// 0014866 // skeletal myofibril assembly // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043403 // skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0060544 // regulation of necroptotic process // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1901740 // negative regulation of myoblast fusion // inferred from sequence or structural similarity /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031264 // death-inducing signaling complex // inferred from direct assay /// 0031265 // CD95 death-inducing signaling complex // inferred from electronic annotation /// 0097342 // ripoptosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0035877 // death effector domain binding // not recorded -261.27 483.71 -8.01 0.00 0.00 -4.43
216236_s_at 216236_s_at AL110298 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL110298.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564K1672 (from clone DKFZp564K1672); partial cds. /FEA=mRNA /GEN=DKFZp564K1672 /PROD=hypothetical protein /DB_XREF=gi:5817258 /UG=Hs.7594 solute carrier family 2 (facilitated glucose transporter), member 3 AL110298 solute carrier family 2 (facilitated glucose transporter), member 14 /// solute carrier family 2 (facilitated glucose transporter), member 3 SLC2A14 /// SLC2A3 6515 /// 144195 NM_001286233 /// NM_001286234 /// NM_001286235 /// NM_001286236 /// NM_001286237 /// NM_006931 /// NM_153449 /// XM_005253315 /// XM_005253317 0005975 // carbohydrate metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0015758 // glucose transport // inferred from electronic annotation /// 0019852 // L-ascorbic acid metabolic process // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation -186.35 140.72 -8.00 0.00 0.00 -4.43
218065_s_at 218065_s_at NM_020644 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020644.1 /DEF=Homo sapiens chromosome 11 open reading frame 15 (C11ORF15), mRNA. /FEA=mRNA /GEN=C11ORF15 /PROD=chromosome 11 open reading frame 15 /DB_XREF=gi:11034854 /UG=Hs.121619 chromosome 11 open reading frame 15 /FL=gb:NM_020644.1 NM_020644 TMEM9 domain family, member B TMEM9B 56674 NM_001286094 /// NM_001286095 /// NM_020644 0007165 // signal transduction // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from mutant phenotype 113.03 242.16 7.99 0.00 0.00 -4.43
204087_s_at 204087_s_at NM_021095 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021095.1 /DEF=Homo sapiens solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (SLC5A6), mRNA. /FEA=mRNA /GEN=SLC5A6 /PROD=solute carrier family 5 (sodium-dependentvitamin transporter), member 6 /DB_XREF=gi:10863878 /UG=Hs.321579 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 /FL=gb:NM_021095.1 gb:AF069307.1 gb:AF081571.1 NM_021095 solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 SLC5A6 8884 NM_021095 /// NR_028323 /// XM_006712128 /// XM_006712129 /// XM_006712130 /// XM_006712131 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006768 // biotin metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0015878 // biotin transport // inferred from electronic annotation /// 0015887 // pantothenate transmembrane transport // inferred from electronic annotation /// 0015939 // pantothenate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008523 // sodium-dependent multivitamin transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 68.00 108.85 7.98 0.00 0.00 -4.43
212905_at 212905_at AI872408 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI872408 /FEA=EST /DB_XREF=gi:5546457 /DB_XREF=est:wm58f02.x1 /CLONE=IMAGE:2440155 /UG=Hs.21992 likely ortholog of mouse variant polyadenylation protein CSTF-64; KIAA0689 protein AI872408 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant CSTF2T 23283 NM_015235 0006397 // mRNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 63.65 58.40 7.98 0.00 0.00 -4.43
202727_s_at 202727_s_at NM_000416 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000416.1 /DEF=Homo sapiens interferon gamma receptor 1 (IFNGR1), mRNA. /FEA=mRNA /GEN=IFNGR1 /PROD=interferon gamma receptor 1 /DB_XREF=gi:4557879 /UG=Hs.180866 interferon gamma receptor 1 /FL=gb:BC005333.1 gb:J03143.1 gb:NM_000416.1 NM_000416 interferon gamma receptor 1 IFNGR1 3459 NM_000416 /// XM_006715470 /// XM_006715471 0007165 // signal transduction // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation 0004906 // interferon-gamma receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019955 // cytokine binding // inferred from electronic annotation -304.80 295.57 -7.97 0.00 0.00 -4.43
204358_s_at 204358_s_at AF169676 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF169676.1 /DEF=Homo sapiens leucine-rich repeat transmembrane protein FLRT2 (FLRT2) mRNA, complete cds. /FEA=mRNA /GEN=FLRT2 /PROD=leucine-rich repeat transmembrane protein FLRT2 /DB_XREF=gi:6808604 /UG=Hs.48998 fibronectin leucine rich transmembrane protein 2 /FL=gb:AB007865.1 gb:AF169676.1 gb:NM_013231.1 AF169676 fibronectin leucine rich transmembrane protein 2 /// uncharacterized LOC100506718 FLRT2 /// LOC100506718 23768 /// 100506718 NM_013231 /// XM_005267489 /// XM_005267490 /// XM_006720095 /// XR_111450 /// XR_172052 /// XR_248023 /// XR_248024 /// XR_248025 /// XR_424524 /// XR_424525 /// XR_424526 /// XR_424527 /// XR_429303 /// XR_429304 /// XR_429305 /// XR_429306 /// XR_429307 /// XR_429308 /// XR_429309 /// XR_433009 /// XR_433010 /// XR_433011 /// XR_433012 /// XR_433013 0007155 // cell adhesion // inferred from electronic annotation /// 0035556 // intracellular signal transduction // non-traceable author statement 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005057 // receptor signaling protein activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // non-traceable author statement -166.70 178.82 -7.97 0.00 0.00 -4.43
207375_s_at 207375_s_at NM_002189 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002189.1 /DEF=Homo sapiens interleukin 15 receptor, alpha (IL15RA), mRNA. /FEA=mRNA /GEN=IL15RA /PROD=interleukin 15 receptor, alpha /DB_XREF=gi:4504648 /UG=Hs.12503 interleukin 15 receptor, alpha /FL=gb:U31628.1 gb:NM_002189.1 NM_002189 interleukin 15 receptor, alpha IL15RA 3601 NM_001243539 /// NM_001256765 /// NM_002189 /// NM_172200 /// NR_046362 /// XM_006717441 /// XM_006717442 /// XM_006717443 /// XM_006717444 /// XM_006717445 /// XM_006717446 /// XM_006717447 0007165 // signal transduction // traceable author statement /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032825 // positive regulation of natural killer cell differentiation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0004871 // signal transducer activity // traceable author statement /// 0004896 // cytokine receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -82.62 102.81 -7.97 0.00 0.00 -4.43
212367_at 212367_at AI799061 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI799061 /FEA=EST /DB_XREF=gi:5364533 /DB_XREF=est:we98a10.x1 /CLONE=IMAGE:2349114 /UG=Hs.6048 FEM-1 (C.elegans) homolog b /FL=gb:AF178632.1 gb:NM_015322.1 gb:AF204883.1 AI799061 fem-1 homolog b (C. elegans) FEM1B 10116 NM_015322 /// XM_006720370 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0006915 // apoptotic process // non-traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051438 // regulation of ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060743 // epithelial cell maturation involved in prostate gland development // inferred from electronic annotation /// 1902041 // regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2000001 // regulation of DNA damage checkpoint // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005123 // death receptor binding // inferred from mutant phenotype /// 0005123 // death receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 84.85 65.70 7.97 0.00 0.00 -4.43
212222_at 212222_at AU143855 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU143855 /FEA=EST /DB_XREF=gi:11005376 /DB_XREF=est:AU143855 /CLONE=HEMBA1000210 /UG=Hs.112396 KIAA0077 protein AU143855 proteasome (prosome, macropain) activator subunit 4 PSME4 23198 NM_014614 /// XM_006711969 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010499 // proteasomal ubiquitin-independent protein catabolic process // inferred from sequence or structural similarity /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0035093 // spermatogenesis, exchange of chromosomal proteins // inferred from sequence or structural similarity /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 1990111 // spermatoproteasome complex // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from sequence or structural similarity /// 0070577 // lysine-acetylated histone binding // inferred from sequence or structural similarity 79.23 84.76 7.96 0.00 0.00 -4.43
205018_s_at 205018_s_at NM_005757 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005757.2 /DEF=Homo sapiens C3H-type zinc finger protein; similar to D. melanogaster muscleblind B protein (MBLL), mRNA. /FEA=mRNA /GEN=MBLL /PROD=C3H-type zinc finger protein /DB_XREF=gi:9665257 /UG=Hs.184340 C3H-type zinc finger protein; similar to D. melanogaster muscleblind B protein /FL=gb:AF061261.1 gb:NM_005757.2 NM_005757 muscleblind-like splicing regulator 2 MBNL2 10150 NM_144778 /// NM_207304 /// XM_005254018 /// XM_005254019 /// XM_005254020 /// XM_005254021 /// XM_005254022 /// XM_006719912 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -301.20 266.12 -7.96 0.00 0.00 -4.43
201778_s_at 201778_s_at NM_014774 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014774.1 /DEF=Homo sapiens KIAA0494 gene product (KIAA0494), mRNA. /FEA=mRNA /GEN=KIAA0494 /PROD=KIAA0494 gene product /DB_XREF=gi:7662159 /UG=Hs.62515 KIAA0494 gene product /FL=gb:BC002525.1 gb:AB007963.1 gb:NM_014774.1 NM_014774 EF-hand calcium binding domain 14 EFCAB14 9813 NM_014774 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 146.65 286.57 7.95 0.00 0.00 -4.43
213895_at 213895_at BF445047 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF445047 /FEA=EST /DB_XREF=gi:11510185 /DB_XREF=est:nad20g10.x1 /CLONE=IMAGE:3366330 /UG=Hs.79368 epithelial membrane protein 1 BF445047 epithelial membrane protein 1 EMP1 2012 NM_001423 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008544 // epidermis development // traceable author statement /// 0016049 // cell growth // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 85.30 68.55 7.95 0.00 0.00 -4.43
202365_at 202365_at BC004815 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004815.1 /DEF=Homo sapiens, clone MGC:5139, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:5139) /DB_XREF=gi:13435956 /UG=Hs.127610 acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain /FL=gb:BC004815.1 gb:M26393.1 gb:NM_000017.1 BC004815 unc-119 homolog B (C. elegans) UNC119B 84747 NM_001080533 /// NM_032661 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0042953 // lipoprotein transport // inferred from direct assay /// 0060271 // cilium morphogenesis // inferred from mutant phenotype 0005929 // cilium // inferred from electronic annotation /// 0035869 // ciliary transition zone // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from direct assay 94.55 91.78 7.94 0.00 0.00 -4.43
202710_at 202710_at BC000899 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000899.1 /DEF=Homo sapiens, Golgi vesicular membrane trafficking protein p18, clone MGC:5210, mRNA, complete cds. /FEA=mRNA /PROD=Golgi vesicular membrane trafficking proteinp18 /DB_XREF=gi:12654162 /UG=Hs.23103 Bet1 (S. cerevisiae) homolog /FL=gb:BC000899.1 gb:NM_005868.2 gb:AF007551.1 BC000899 Bet1 golgi vesicular membrane trafficking protein BET1 10282 NM_005868 /// XM_005250109 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048280 // vesicle fusion with Golgi apparatus // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031985 // Golgi cisterna // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from electronic annotation 127.12 195.11 7.94 0.00 0.00 -4.43
219013_at 219013_at NM_022087 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022087.1 /DEF=Homo sapiens hypothetical protein FLJ21634 (FLJ21634), mRNA. /FEA=mRNA /GEN=FLJ21634 /PROD=hypothetical protein FLJ21634 /DB_XREF=gi:11545800 /UG=Hs.97056 hypothetical protein FLJ21634 /FL=gb:NM_022087.1 NM_022087 polypeptide N-acetylgalactosaminyltransferase 11 GALNT11 63917 NM_022087 /// XM_006716082 /// XM_006716083 /// XM_006716084 0006486 // protein glycosylation // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007220 // Notch receptor processing // inferred from sequence or structural similarity /// 0007368 // determination of left/right symmetry // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008593 // regulation of Notch signaling pathway // inferred from sequence or structural similarity /// 0016266 // O-glycan processing // traceable author statement /// 0018243 // protein O-linked glycosylation via threonine // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0060271 // cilium morphogenesis // inferred from sequence or structural similarity /// 0061314 // Notch signaling involved in heart development // inferred from sequence or structural similarity 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0005112 // Notch binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 71.58 67.71 7.92 0.00 0.00 -4.43
204839_at 204839_at NM_015918 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015918.1 /DEF=Homo sapiens hypothetical protein (HSPC004), mRNA. /FEA=mRNA /GEN=HSPC004 /PROD=hypothetical protein /DB_XREF=gi:7705422 /UG=Hs.279913 hypothetical protein /FL=gb:AF070660.1 gb:AF117232.1 gb:NM_015918.1 NM_015918 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) POP5 51367 NM_015918 /// NM_198201 /// NM_198202 0008033 // tRNA processing // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005655 // nucleolar ribonuclease P complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 71.45 118.72 7.92 0.00 0.00 -4.43
202697_at 202697_at NM_007006 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007006.1 /DEF=Homo sapiens cleavage and polyadenylation specific factor 5, 25 kD subunit (CPSF5), mRNA. /FEA=mRNA /GEN=CPSF5 /PROD=cleavage and polyadenylation specific factor 5,25 kD subunit /DB_XREF=gi:5901925 /UG=Hs.9605 cleavage and polyadenylation specific factor 5, 25 kD subunit /FL=gb:BC001403.1 gb:NM_007006.1 NM_007006 nudix (nucleoside diphosphate linked moiety X)-type motif 21 NUDT21 11051 NM_007006 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006378 // mRNA polyadenylation // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from direct assay /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051262 // protein tetramerization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005849 // mRNA cleavage factor complex // inferred from direct assay /// 0042382 // paraspeckles // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017091 // AU-rich element binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -70.58 167.39 -7.90 0.00 0.00 -4.43
203274_at 203274_at NM_012151 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012151.2 /DEF=Homo sapiens coagulation factor VIII-associated (intronic transcript) (F8A), mRNA. /FEA=mRNA /GEN=F8A /PROD=coagulation factor VIII-associated protein /DB_XREF=gi:12056462 /UG=Hs.83363 coagulation factor VIII-associated (intronic transcript) /FL=gb:NM_012151.2 NM_012151 coagulation factor VIII-associated 1 /// coagulation factor VIII-associated 2 /// coagulation factor VIII-associated 3 F8A1 /// F8A2 /// F8A3 8263 /// 474383 /// 474384 NM_001007523 /// NM_001007524 /// NM_012151 0005634 // nucleus // inferred from direct assay 68.05 76.40 7.89 0.00 0.00 -4.43
208313_s_at 208313_s_at NM_004630 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004630.1 /DEF=Homo sapiens zinc finger protein 162 (ZNF162), mRNA. /FEA=mRNA /GEN=ZNF162 /PROD=zinc finger protein 162 /DB_XREF=gi:4759339 /UG=Hs.180677 zinc finger protein 162 /FL=gb:NM_004630.1 gb:D26120.1 NM_004630 splicing factor 1 SF1 7536 NM_001178030 /// NM_001178031 /// NM_004630 /// NM_201995 /// NM_201997 /// NM_201998 /// NR_033649 /// NR_033650 /// XM_006718681 /// XM_006718682 /// XM_006718683 /// XM_006718684 /// XM_006718685 0000245 // spliceosomal complex assembly // non-traceable author statement /// 0000389 // mRNA 3'-splice site recognition // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0022402 // cell cycle process // inferred from electronic annotation /// 0030238 // male sex determination // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005840 // ribosome // non-traceable author statement 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // non-traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 153.12 435.19 7.88 0.00 0.00 -4.43
221483_s_at 221483_s_at AF084555 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF084555.1 /DEF=Homo sapiens okadaic acid-inducible and cAMP-regulated phosphoprotein 19 (ARPP-19) mRNA, complete cds. /FEA=mRNA /GEN=ARPP-19 /PROD=okadaic acid-inducible and cAMP-regulatedphosphoprotein 19 /DB_XREF=gi:5813858 /UG=Hs.7351 cyclic AMP phosphoprotein, 19 kD /FL=gb:BC003418.1 gb:AF084555.1 AF084555 cAMP-regulated phosphoprotein, 19kDa ARPP19 10776 NM_006628 /// XM_005254132 /// XM_005254133 /// XM_005254134 /// XM_005254135 0000086 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from sequence or structural similarity /// 0045722 // positive regulation of gluconeogenesis // inferred from direct assay /// 0046326 // positive regulation of glucose import // non-traceable author statement /// 0050790 // regulation of catalytic activity // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0008601 // protein phosphatase type 2A regulator activity // inferred from sequence or structural similarity /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0019212 // phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0051721 // protein phosphatase 2A binding // inferred from sequence or structural similarity 401.80 600.38 7.87 0.00 0.00 -4.43
204657_s_at 204657_s_at NM_003028 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003028.1 /DEF=Homo sapiens SHB adaptor protein (a Src homology 2 protein) (SHB), mRNA. /FEA=mRNA /GEN=SHB /PROD=SHB adaptor protein (a Src homology 2 protein) /DB_XREF=gi:4506934 /UG=Hs.244542 SHB adaptor protein (a Src homology 2 protein) /FL=gb:NM_003028.1 NM_003028 Src homology 2 domain containing adaptor protein B SHB 6461 NM_003028 0001525 // angiogenesis // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // traceable author statement /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042100 // B cell proliferation // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 1900194 // negative regulation of oocyte maturation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -82.97 96.09 -7.86 0.00 0.00 -4.43
211527_x_at 211527_x_at M27281 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M27281.1 /DEF=Human vascular permeability factor mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:340300 /UG=Hs.73793 vascular endothelial growth factor /FL=gb:M27281.1 M27281 vascular endothelial growth factor A VEGFA 7422 NM_001025366 /// NM_001025367 /// NM_001025368 /// NM_001025369 /// NM_001025370 /// NM_001033756 /// NM_001171622 /// NM_001171623 /// NM_001171624 /// NM_001171625 /// NM_001171626 /// NM_001171627 /// NM_001171628 /// NM_001171629 /// NM_001171630 /// NM_001204384 /// NM_001204385 /// NM_001287044 /// NM_003376 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001525 // angiogenesis // inferred from direct assay /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // traceable author statement /// 0001666 // response to hypoxia // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001822 // kidney development // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001944 // vasculature development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0002052 // positive regulation of neuroblast proliferation // inferred from sequence or structural similarity /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0002092 // positive regulation of receptor internalization // inferred from direct assay /// 0002575 // basophil chemotaxis // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0002687 // positive regulation of leukocyte migration // traceable author statement /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003169 // coronary vein morphogenesis // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007498 // mesoderm development // inferred from sequence or structural similarity /// 0007595 // lactation // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008360 // regulation of cell shape // inferred from direct assay /// 0009409 // response to cold // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0016477 // cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from direct assay /// 0030225 // macrophage differentiation // inferred from direct assay /// 0030324 // lung development // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from sequence or structural similarity /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0031077 // post-embryonic camera-type eye development // inferred from sequence or structural similarity /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0032793 // positive regulation of CREB transcription factor activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0035148 // tube formation // inferred from direct assay /// 0035767 // endothelial cell chemotaxis // inferred from direct assay /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from direct assay /// 0036303 // lymph vessel morphogenesis // inferred from sequence or structural similarity /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from direct assay /// 0038091 // positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway // inferred from direct assay /// 0038190 // VEGF-activated neuropilin signaling pathway // inferred from sequence or structural similarity /// 0040007 // growth // inferred from sequence or structural similarity /// 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043069 // negative regulation of programmed cell death // inferred from electronic annotation /// 0043117 // positive regulation of vascular permeability // inferred from direct assay /// 0043129 // surfactant homeostasis // inferred from sequence or structural similarity /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0048255 // mRNA stabilization // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048469 // cell maturation // inferred from sequence or structural similarity /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from sequence or structural similarity /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // inferred from sequence or structural similarity /// 0048754 // branching morphogenesis of an epithelial tube // inferred from sequence or structural similarity /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0050679 // positive regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from direct assay /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // non-traceable author statement /// 0051272 // positive regulation of cellular component movement // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0060319 // primitive erythrocyte differentiation // inferred from sequence or structural similarity /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from sequence or structural similarity /// 0060754 // positive regulation of mast cell chemotaxis // inferred from direct assay /// 0060948 // cardiac vascular smooth muscle cell development // inferred from sequence or structural similarity /// 0060982 // coronary artery morphogenesis // inferred from sequence or structural similarity /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0061419 // positive regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement /// 0071542 // dopaminergic neuron differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 0090037 // positive regulation of protein kinase C signaling // inferred from direct assay /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0090259 // regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1900086 // positive regulation of peptidyl-tyrosine autophosphorylation // inferred from direct assay /// 1900745 // positive regulation of p38MAPK cascade // inferred from direct assay /// 1901492 // positive regulation of lymphangiogenesis // inferred from electronic annotation /// 1901727 // positive regulation of histone deacetylase activity // inferred from direct assay /// 1902336 // positive regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1902533 // positive regulation of intracellular signal transduction // inferred from direct assay /// 1902966 // positive regulation of protein localization to early endosome // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation 0001968 // fibronectin binding // inferred from direct assay /// 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005172 // vascular endothelial growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // inferred from mutant phenotype /// 0038191 // neuropilin binding // inferred from physical interaction /// 0042056 // chemoattractant activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043183 // vascular endothelial growth factor receptor 1 binding // inferred from physical interaction /// 0043184 // vascular endothelial growth factor receptor 2 binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048018 // receptor agonist activity // inferred from physical interaction /// 0050840 // extracellular matrix binding // inferred by curator -108.55 64.42 -7.85 0.00 0.00 -4.43
64488_at 64488_at AW003091 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AW003091:wr03d04.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2480455 /clone_end=3' /gb=AW003091 /gi=5849929 /ug=Hs.6217 /len=613 AW003091 immunity-related GTPase family, Q IRGQ 126298 NM_001007561 /// XM_005258515 /// XM_005258516 60.12 35.41 7.84 0.00 0.00 -4.43
218684_at 218684_at NM_018103 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018103.1 /DEF=Homo sapiens hypothetical protein FLJ10470 (FLJ10470), mRNA. /FEA=mRNA /GEN=FLJ10470 /PROD=hypothetical protein FLJ10470 /DB_XREF=gi:8922441 /UG=Hs.44672 hypothetical protein FLJ10470 /FL=gb:NM_018103.1 NM_018103 leucine rich repeat containing 8 family, member D LRRC8D 55144 NM_001134479 /// NM_018103 /// XM_005270991 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 98.55 174.90 7.84 0.00 0.00 -4.43
212859_x_at 212859_x_at BF217861 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF217861 /FEA=EST /DB_XREF=gi:11111447 /DB_XREF=est:601885414F1 /CLONE=IMAGE:4103955 /UG=Hs.74170 metallothionein 1E (functional) BF217861 metallothionein 1E MT1E 4493 NM_175617 /// XM_005255956 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005507 // copper ion binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046870 // cadmium ion binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -1177.60 2455.90 -7.83 0.00 0.00 -4.43
203044_at 203044_at NM_014918 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014918.1 /DEF=Homo sapiens KIAA0990 protein (KIAA0990), mRNA. /FEA=mRNA /GEN=KIAA0990 /PROD=KIAA0990 protein /DB_XREF=gi:7662433 /UG=Hs.110488 KIAA0990 protein /FL=gb:AB023207.1 gb:NM_014918.1 NM_014918 chondroitin sulfate synthase 1 CHSY1 22856 NM_014918 /// XM_006720435 0005975 // carbohydrate metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // inferred from direct assay /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0030279 // negative regulation of ossification // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047238 // glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0050510 // N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity // inferred from electronic annotation -112.12 279.66 -7.83 0.00 0.00 -4.43
201473_at 201473_at NM_002229 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002229.1 /DEF=Homo sapiens jun B proto-oncogene (JUNB), mRNA. /FEA=mRNA /GEN=JUNB /PROD=jun B proto-oncogene /DB_XREF=gi:4504808 /UG=Hs.198951 jun B proto-oncogene /FL=gb:BC004250.1 gb:NM_002229.1 NM_002229 jun B proto-oncogene JUNB 3726 NM_002229 0001570 // vasculogenesis // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007565 // female pregnancy // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0033687 // osteoblast proliferation // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0046697 // decidualization // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0000785 // chromatin // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -109.20 103.62 -7.83 0.00 0.00 -4.43
212973_at 212973_at AI692341 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI692341 /FEA=EST /DB_XREF=gi:4969681 /DB_XREF=est:wd85g04.x1 /CLONE=IMAGE:2338422 /UG=Hs.79886 ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) AI692341 ribose 5-phosphate isomerase A RPIA 22934 NM_144563 0005975 // carbohydrate metabolic process // traceable author statement /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004751 // ribose-5-phosphate isomerase activity // non-traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from electronic annotation 84.70 183.05 7.83 0.00 0.00 -4.43
201018_at 201018_at AL079283 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL079283.1 /DEF=Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 39515. /FEA=mRNA /DB_XREF=gi:5102744 /UG=Hs.4310 eukaryotic translation initiation factor 1A /FL=gb:BC000793.1 gb:L18960.1 gb:NM_001412.1 AL079283 eukaryotic translation initiation factor 1A, X-linked EIF1AX 1964 NM_001412 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 147.85 155.97 7.83 0.00 0.00 -4.43
200617_at 200617_at NM_014730 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014730.1 /DEF=Homo sapiens KIAA0152 gene product (KIAA0152), mRNA. /FEA=mRNA /GEN=KIAA0152 /PROD=KIAA0152 gene product /DB_XREF=gi:7661947 /UG=Hs.181418 KIAA0152 gene product /FL=gb:BC000371.1 gb:D63486.1 gb:NM_014730.1 NM_014730 malectin MLEC 9761 NM_014730 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0019899 // enzyme binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from sequence or structural similarity 139.00 210.72 7.83 0.00 0.00 -4.43
202258_s_at 202258_s_at U50532 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U50532.1 /DEF=Human BRCA2 region, mRNA sequence CG005. /FEA=mRNA /PROD=unknown /DB_XREF=gi:1531603 /UG=Hs.23518 hypothetical protein from BCRA2 region /FL=gb:NM_014887.1 U50532 NEDD4 binding protein 2-like 2 N4BP2L2 10443 NM_001278432 /// NM_014887 /// NM_033111 /// XM_005266218 /// XM_005266219 /// XM_005266220 /// XM_005266221 /// XM_005266222 /// XM_005266223 /// XM_005266224 /// XM_005266228 /// XM_006719754 /// XR_429211 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 1902035 // positive regulation of hematopoietic stem cell proliferation // inferred from mutant phenotype /// 1902037 // negative regulation of hematopoietic stem cell differentiation // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001106 // RNA polymerase II transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction 91.97 82.31 7.83 0.00 0.00 -4.43
217980_s_at 217980_s_at NM_017840 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017840.1 /DEF=Homo sapiens hypothetical protein FLJ20484 (FLJ20484), mRNA. /FEA=mRNA /GEN=FLJ20484 /PROD=hypothetical protein FLJ20484 /DB_XREF=gi:8923447 /UG=Hs.5080 hypothetical protein FLJ20484 /FL=gb:AF275806.1 gb:BC001040.1 gb:NM_017840.1 gb:AF183428.1 NM_017840 mitochondrial ribosomal protein L16 MRPL16 54948 NM_017840 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 115.65 199.00 7.81 0.00 0.00 -4.43
204135_at 204135_at NM_014890 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014890.1 /DEF=Homo sapiens downregulated in ovarian cancer 1 (DOC1), mRNA. /FEA=mRNA /GEN=DOC1 /PROD=downregulated in ovarian cancer 1 /DB_XREF=gi:7657036 /UG=Hs.15432 downregulated in ovarian cancer 1 /FL=gb:U53445.1 gb:NM_014890.1 NM_014890 filamin A interacting protein 1-like FILIP1L 11259 NM_001042459 /// NM_001282793 /// NM_001282794 /// NM_014890 /// NM_182909 /// XM_006713486 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016459 // myosin complex // non-traceable author statement -76.65 218.05 -7.81 0.00 0.00 -4.43
200708_at 200708_at NM_002080 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002080.1 /DEF=Homo sapiens glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=GOT2 /PROD=aspartate aminotransferase 2 precursor /DB_XREF=gi:4504068 /UG=Hs.170197 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) /FL=gb:BC000525.1 gb:M22632.1 gb:NM_002080.1 NM_002080 glutamic-oxaloacetic transaminase 2, mitochondrial GOT2 2806 NM_001286220 /// NM_002080 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006531 // aspartate metabolic process // inferred from sequence or structural similarity /// 0006532 // aspartate biosynthetic process // inferred from electronic annotation /// 0006533 // aspartate catabolic process // inferred from direct assay /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0015908 // fatty acid transport // inferred from expression pattern /// 0019470 // 4-hydroxyproline catabolic process // traceable author statement /// 0019550 // glutamate catabolic process to aspartate // inferred from electronic annotation /// 0019551 // glutamate catabolic process to 2-oxoglutarate // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045471 // response to ethanol // inferred from direct assay /// 0097052 // L-kynurenine metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // not recorded /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from direct assay /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from sequence or structural similarity /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016212 // kynurenine-oxoglutarate transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0080130 // L-phenylalanine:2-oxoglutarate aminotransferase activity // inferred from electronic annotation 297.45 665.65 7.81 0.00 0.00 -4.43
205474_at 205474_at NM_015986 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015986.1 /DEF=Homo sapiens cytokine receptor-like molecule 9 (CREME9), mRNA. /FEA=mRNA /GEN=CREME9 /PROD=cytokine receptor-like molecule 9 /DB_XREF=gi:7705331 /UG=Hs.7120 cytokine receptor-like molecule 9 /FL=gb:AF046059.1 gb:AF120151.1 gb:NM_015986.1 NM_015986 cytokine receptor-like factor 3 CRLF3 51379 NM_015986 /// NR_073118 /// XM_006721941 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046427 // positive regulation of JAK-STAT cascade // inferred from direct assay /// 0071158 // positive regulation of cell cycle arrest // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay 67.97 174.01 7.80 0.00 0.00 -4.43
204906_at 204906_at BC002363 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002363.1 /DEF=Homo sapiens, ribosomal protein S6 kinase, 90kD, polypeptide 2, clone MGC:8629, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein S6 kinase, 90kD, polypeptide2 /DB_XREF=gi:12803118 /UG=Hs.301664 ribosomal protein S6 kinase, 90kD, polypeptide 2 /FL=gb:NM_021135.1 gb:BC002363.1 BC002363 ribosomal protein S6 kinase, 90kDa, polypeptide 2 RPS6KA2 6196 NM_001006932 /// NM_021135 /// XM_005267092 /// XM_006715549 0001556 // oocyte maturation // inferred from electronic annotation /// 0002035 // brain renin-angiotensin system // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045835 // negative regulation of meiosis // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0060047 // heart contraction // inferred from electronic annotation /// 0070613 // regulation of protein processing // inferred from electronic annotation /// 0071322 // cellular response to carbohydrate stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004711 // ribosomal protein S6 kinase activity // inferred from electronic annotation /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -154.37 292.94 -7.79 0.00 0.00 -4.43
208845_at 208845_at BC002456 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002456.1 /DEF=Homo sapiens, voltage-dependent anion channel 3, clone MGC:1966, mRNA, complete cds. /FEA=mRNA /PROD=voltage-dependent anion channel 3 /DB_XREF=gi:12803280 /UG=Hs.7381 voltage-dependent anion channel 3 /FL=gb:BC002456.1 gb:U90943.1 gb:AF038962.1 gb:NM_005662.1 BC002456 voltage-dependent anion channel 3 VDAC3 7419 NM_001135694 /// NM_005662 /// XM_006716394 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0015853 // adenine transport // traceable author statement /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0046930 // pore complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0008308 // voltage-gated anion channel activity // traceable author statement /// 0015288 // porin activity // inferred from electronic annotation 200.60 743.23 7.79 0.00 0.00 -4.43
204286_s_at 204286_s_at NM_021127 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021127.1 /DEF=Homo sapiens phorbol-12-myristate-13-acetate-induced protein 1 (PMAIP1), mRNA. /FEA=mRNA /GEN=PMAIP1 /PROD=phorbol-12-myristate-13-acetate-induced protein1 /DB_XREF=gi:10863922 /UG=Hs.96 phorbol-12-myristate-13-acetate-induced protein 1 /FL=gb:NM_021127.1 NM_021127 phorbol-12-myristate-13-acetate-induced protein 1 PMAIP1 5366 NM_021127 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0009411 // response to UV // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010498 // proteasomal protein catabolic process // inferred from direct assay /// 0010907 // positive regulation of glucose metabolic process // inferred from direct assay /// 0010917 // negative regulation of mitochondrial membrane potential // inferred from sequence or structural similarity /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0042149 // cellular response to glucose starvation // inferred from mutant phenotype /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from electronic annotation /// 0043029 // T cell homeostasis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043331 // response to dsRNA // inferred from direct assay /// 0043517 // positive regulation of DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from direct assay /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype /// 0072593 // reactive oxygen species metabolic process // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from direct assay /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction -228.10 146.40 -7.78 0.00 0.00 -4.43
201862_s_at 201862_s_at NM_004735 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004735.1 /DEF=Homo sapiens leucine rich repeat (in FLII) interacting protein 1 (LRRFIP1), mRNA. /FEA=mRNA /GEN=LRRFIP1 /PROD=leucine rich repeat (in FLII) interactingprotein 1 /DB_XREF=gi:4758689 /UG=Hs.326159 leucine rich repeat (in FLII) interacting protein 1 /FL=gb:NM_004735.1 NM_004735 leucine rich repeat (in FLII) interacting protein 1 LRRFIP1 9208 NM_001137550 /// NM_001137551 /// NM_001137552 /// NM_001137553 /// NM_004735 /// XM_005246112 /// XM_005246113 /// XM_005246114 /// XM_005246115 /// XM_005246116 /// XM_005246117 /// XM_005246118 /// XM_005246119 /// XM_005246120 /// XM_005246121 /// XM_005246122 /// XM_005246123 /// XM_005246124 /// XM_005246125 /// XM_005246126 /// XM_005246127 /// XM_005246128 /// XM_005246129 /// XM_005246130 /// XM_005246131 /// XM_005246132 /// XM_005246133 /// XM_005246134 /// XM_005246135 /// XM_005246136 /// XM_005246137 /// XM_005246138 /// XM_005246139 /// XM_005246140 /// XM_005246141 /// XM_005246142 /// XM_006712840 /// XM_006712841 /// XM_006712842 /// XM_006712843 /// XM_006712844 /// XM_006712845 /// XM_006712846 /// XM_006712847 /// XM_006712848 /// XM_006712849 /// XM_006712850 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay -76.90 225.22 -7.78 0.00 0.00 -4.43
212902_at 212902_at BE645231 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE645231 /FEA=EST /DB_XREF=gi:9969542 /DB_XREF=est:7e66g08.x1 /CLONE=IMAGE:3287486 /UG=Hs.211612 SEC24 (S. cerevisiae) related gene family, member A BE645231 SEC24 family member A SEC24A 10802 NM_001252231 /// NM_021982 /// XM_005271854 /// XM_006714523 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030127 // COPII vesicle coat // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation -104.90 126.80 -7.77 0.00 0.00 -4.43
218133_s_at 218133_s_at NM_021824 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021824.1 /DEF=Homo sapiens NIF3 (Ngg1 interacting factor 3, S.pombe homolog)-like 1 (NIF3L1), mRNA. /FEA=mRNA /GEN=NIF3L1 /PROD=NIF3 (Ngg1 interacting factor 3, S.pombehomolog)-like 1 /DB_XREF=gi:11141898 /UG=Hs.21943 NIF3 (Ngg1 interacting factor 3, S.pombe homolog)-like 1 /FL=gb:AF182416.1 gb:NM_021824.1 gb:AF060513.1 gb:AB038949.1 NM_021824 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) NIF3L1 60491 NM_001136039 /// NM_001142355 /// NM_001142356 /// NM_021824 /// XM_005246742 /// XM_006712676 0035998 // 7,8-dihydroneopterin 3'-triphosphate biosynthetic process // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003934 // GTP cyclohydrolase I activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 77.23 62.16 7.77 0.00 0.00 -4.43
222216_s_at 222216_s_at AK026857 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026857.1 /DEF=Homo sapiens cDNA: FLJ23204 fis, clone ADSE00191. /FEA=mRNA /DB_XREF=gi:10439813 /UG=Hs.10026 ribosomal protein L17 isolog AK026857 mitochondrial ribosomal protein L17 MRPL17 63875 NM_022061 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction 83.73 169.69 7.76 0.00 0.00 -4.43
208766_s_at 208766_s_at BC001449 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001449.1 /DEF=Homo sapiens, heterogeneous nuclear ribonucleoprotein R, clone MGC:2039, mRNA, complete cds. /FEA=mRNA /PROD=heterogeneous nuclear ribonucleoprotein R /DB_XREF=gi:12655184 /UG=Hs.15265 heterogeneous nuclear ribonucleoprotein R /FL=gb:BC001449.1 gb:AF000364.1 gb:NM_005826.1 BC001449 heterogeneous nuclear ribonucleoprotein R HNRNPR 10236 NM_001102397 /// NM_001102398 /// NM_001102399 /// NM_005826 /// XM_005245711 /// XM_005245712 /// XM_005245713 /// XM_005245714 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // non-traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 282.97 670.14 7.75 0.00 0.00 -4.43
213203_at 213203_at AI633709 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI633709 /FEA=EST /DB_XREF=gi:4685039 /DB_XREF=est:th71f03.x1 /CLONE=IMAGE:2124125 /UG=Hs.30174 small nuclear RNA activating complex, polypeptide 5, 19kD AI633709 small nuclear RNA activating complex, polypeptide 5, 19kDa SNAPC5 10302 NM_006049 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006384 // transcription initiation from RNA polymerase III promoter // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 70.90 92.25 7.75 0.00 0.00 -4.43
212265_at 212265_at AL031781 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031781 /DEF=Human DNA sequence from clone 51J12 on chromosome 6q26-27. Contains the 3 part of the alternatively spliced gene for the human orthologs of mouse QKI-7 and QKI-7B (KH Domain RNA Binding proteins) and zebrafish ZKQ-1 (Quaking protein homolog). Con... /FEA=mRNA_1 /DB_XREF=gi:4038570 /UG=Hs.15020 homolog of mouse quaking QKI (KH domain RNA binding protein) /FL=gb:AF142419.1 gb:AF142422.1 AL031781 QKI, KH domain containing, RNA binding QKI 9444 NM_006775 /// NM_206853 /// NM_206854 /// NM_206855 /// XM_005267224 /// XR_245557 /// XR_427977 /// XR_427978 0001570 // vasculogenesis // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0042759 // long-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -149.32 705.14 -7.75 0.00 0.00 -4.43
205006_s_at 205006_s_at NM_004808 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004808.1 /DEF=Homo sapiens N-myristoyltransferase 2 (NMT2), mRNA. /FEA=mRNA /GEN=NMT2 /PROD=glycylpeptide N-tetradecanoyltransferase 2 /DB_XREF=gi:4758815 /UG=Hs.122647 N-myristoyltransferase 2 /FL=gb:AF043325.1 gb:NM_004808.1 NM_004808 N-myristoyltransferase 2 NMT2 9397 NM_004808 /// XM_005252642 /// XM_005252643 /// XM_006717539 0006499 // N-terminal protein myristoylation // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0009249 // protein lipoylation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0003824 // catalytic activity // traceable author statement /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 105.17 152.31 7.74 0.00 0.00 -4.43
210638_s_at 210638_s_at AF176704 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF176704.1 /DEF=Homo sapiens F-box protein FBX9 mRNA, complete cds. /FEA=mRNA /PROD=F-box protein FBX9 /DB_XREF=gi:6103646 /UG=Hs.11050 F-box only protein 9 /FL=gb:AF176704.1 AF176704 F-box protein 9 FBXO9 26268 NM_012347 /// NM_033480 /// NM_033481 /// XM_005248995 /// XM_005248996 /// XM_006715050 /// XM_006715051 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // non-traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0032006 // regulation of TOR signaling // inferred from mutant phenotype 0000151 // ubiquitin ligase complex // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 118.23 223.51 7.74 0.00 0.00 -4.43
211518_s_at 211518_s_at D30751 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D30751.1 /DEF=Human placenta mRNA for bone morphogenetic protein 4 (BMP-4), complete cds. /FEA=mRNA /GEN=BMP-4 /PROD=bone morphogenetic protein 4 /DB_XREF=gi:576934 /UG=Hs.68879 bone morphogenetic protein 4 /FL=gb:D30751.1 D30751 bone morphogenetic protein 4 BMP4 652 NM_001202 /// NM_130850 /// NM_130851 /// XM_005268015 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000186 // activation of MAPKK activity // inferred from direct assay /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0001656 // metanephros development // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from direct assay /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from direct assay /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001759 // organ induction // inferred from electronic annotation /// 0001822 // kidney development // inferred from mutant phenotype /// 0001823 // mesonephros development // inferred from expression pattern /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0001944 // vasculature development // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from sequence or structural similarity /// 0002043 // blood vessel endothelial cell proliferation involved in sprouting angiogenesis // inferred from direct assay /// 0002062 // chondrocyte differentiation // inferred from sequence or structural similarity /// 0002244 // hematopoietic progenitor cell differentiation // inferred from direct assay /// 0002320 // lymphoid progenitor cell differentiation // inferred from mutant phenotype /// 0003014 // renal system process // inferred from electronic annotation /// 0003130 // BMP signaling pathway involved in heart induction // inferred from mutant phenotype /// 0003139 // secondary heart field specification // inferred from mutant phenotype /// 0003197 // endocardial cushion development // traceable author statement /// 0003279 // cardiac septum development // traceable author statement /// 0003323 // type B pancreatic cell development // inferred from direct assay /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from direct assay /// 0007182 // common-partner SMAD protein phosphorylation // inferred from direct assay /// 0007224 // smoothened signaling pathway // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007500 // mesodermal cell fate determination // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009791 // post-embryonic development // inferred from direct assay /// 0009888 // tissue development // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0010159 // specification of organ position // inferred from electronic annotation /// 0010453 // regulation of cell fate commitment // inferred from direct assay /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0021537 // telencephalon development // inferred from direct assay /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021978 // telencephalon regionalization // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from direct assay /// 0030225 // macrophage differentiation // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030513 // positive regulation of BMP signaling pathway // inferred from sequence or structural similarity /// 0030900 // forebrain development // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0032331 // negative regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // inferred from direct assay /// 0033085 // negative regulation of T cell differentiation in thymus // inferred from mutant phenotype /// 0033088 // negative regulation of immature T cell proliferation in thymus // inferred from mutant phenotype /// 0034504 // protein localization to nucleus // inferred from direct assay /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035990 // tendon cell differentiation // inferred from sequence or structural similarity /// 0035993 // deltoid tuberosity development // inferred from sequence or structural similarity /// 0040007 // growth // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // inferred from direct assay /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042476 // odontogenesis // inferred from genetic interaction /// 0042487 // regulation of odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043401 // steroid hormone mediated signaling pathway // inferred from mutant phenotype /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045606 // positive regulation of epidermal cell differentiation // inferred from direct assay /// 0045662 // negative regulation of myoblast differentiation // inferred from direct assay /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045778 // positive regulation of ossification // inferred from direct assay /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045839 // negative regulation of mitosis // inferred from direct assay /// 0045843 // negative regulation of striated muscle tissue development // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048286 // lung alveolus development // inferred from direct assay /// 0048333 // mesodermal cell differentiation // inferred from electronic annotation /// 0048392 // intermediate mesodermal cell differentiation // inferred from direct assay /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048660 // regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // inferred from sequence or structural similarity /// 0048754 // branching morphogenesis of an epithelial tube // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050918 // positive chemotaxis // inferred from direct assay /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055020 // positive regulation of cardiac muscle fiber development // inferred from mutant phenotype /// 0060113 // inner ear receptor cell differentiation // inferred from electronic annotation /// 0060197 // cloacal septation // inferred from electronic annotation /// 0060235 // lens induction in camera-type eye // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060348 // bone development // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein import into nucleus // inferred from direct assay /// 0060393 // regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0060395 // SMAD protein signal transduction // inferred from direct assay /// 0060425 // lung morphogenesis // inferred from direct assay /// 0060429 // epithelium development // inferred from electronic annotation /// 0060433 // bronchus development // inferred from direct assay /// 0060438 // trachea development // inferred from direct assay /// 0060440 // trachea formation // inferred from electronic annotation /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from direct assay /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060502 // epithelial cell proliferation involved in lung morphogenesis // inferred from direct assay /// 0060503 // bud dilation involved in lung branching // inferred from direct assay /// 0060512 // prostate gland morphogenesis // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0060592 // mammary gland formation // inferred from electronic annotation /// 0060684 // epithelial-mesenchymal cell signaling // inferred from electronic annotation /// 0060686 // negative regulation of prostatic bud formation // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0061035 // regulation of cartilage development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // inferred from direct assay /// 0061047 // positive regulation of branching involved in lung morphogenesis // inferred from sequence or structural similarity /// 0061149 // BMP signaling pathway involved in ureter morphogenesis // inferred from sequence or structural similarity /// 0061151 // BMP signaling pathway involved in renal system segmentation // inferred from sequence or structural similarity /// 0061155 // pulmonary artery endothelial tube morphogenesis // inferred from direct assay /// 0070244 // negative regulation of thymocyte apoptotic process // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071893 // BMP signaling pathway involved in nephric duct formation // inferred from direct assay /// 0072001 // renal system development // inferred from expression pattern /// 0072015 // glomerular visceral epithelial cell development // inferred from electronic annotation /// 0072097 // negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway // inferred from direct assay /// 0072101 // specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway // inferred from direct assay /// 0072104 // glomerular capillary formation // inferred from sequence or structural similarity /// 0072125 // negative regulation of glomerular mesangial cell proliferation // inferred from direct assay /// 0072138 // mesenchymal cell proliferation involved in ureteric bud development // inferred from electronic annotation /// 0072161 // mesenchymal cell differentiation involved in kidney development // inferred from electronic annotation /// 0072192 // ureter epithelial cell differentiation // inferred from sequence or structural similarity /// 0072193 // ureter smooth muscle cell differentiation // inferred from sequence or structural similarity /// 0072198 // mesenchymal cell proliferation involved in ureter development // inferred from electronic annotation /// 0072200 // negative regulation of mesenchymal cell proliferation involved in ureter development // inferred from direct assay /// 0072205 // metanephric collecting duct development // inferred from sequence or structural similarity /// 0090184 // positive regulation of kidney development // inferred from direct assay /// 0090191 // negative regulation of branching involved in ureteric bud morphogenesis // inferred from direct assay /// 0090194 // negative regulation of glomerulus development // inferred from direct assay /// 2000005 // negative regulation of metanephric S-shaped body morphogenesis // inferred from direct assay /// 2000007 // negative regulation of metanephric comma-shaped body morphogenesis // inferred from direct assay /// 2000105 // positive regulation of DNA-dependent DNA replication // inferred from direct assay /// 2000137 // negative regulation of cell proliferation involved in heart morphogenesis // inferred from mutant phenotype /// 2001012 // mesenchymal cell differentiation involved in renal system development // inferred from electronic annotation 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from sequence or structural similarity 0005125 // cytokine activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0042056 // chemoattractant activity // inferred from direct assay /// 0070700 // BMP receptor binding // inferred from direct assay 145.80 150.90 7.74 0.00 0.00 -4.43
202279_at 202279_at NM_004894 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004894.1 /DEF=Homo sapiens chromosome 14 open reading frame 2 (C14ORF2), mRNA. /FEA=mRNA /GEN=C14ORF2 /PROD=chromosome 14 open reading frame 2 /DB_XREF=gi:4758939 /UG=Hs.109052 chromosome 14 open reading frame 2 /FL=gb:BC000429.1 gb:BC001944.1 gb:AF054175.1 gb:NM_004894.1 NM_004894 chromosome 14 open reading frame 2 C14orf2 9556 NM_001127393 /// NM_004894 0005739 // mitochondrion // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 122.78 291.31 7.73 0.00 0.00 -4.43
200828_s_at 200828_s_at BE871379 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE871379 /FEA=EST /DB_XREF=gi:10320155 /DB_XREF=est:601449306F1 /CLONE=IMAGE:3853200 /UG=Hs.62112 zinc finger protein 207 /FL=gb:AF046001.1 gb:NM_003457.1 BE871379 zinc finger protein 207 ZNF207 7756 NM_001032293 /// NM_001098507 /// NM_003457 /// XM_005258028 /// XM_005258029 /// XM_005258030 0000070 // mitotic sister chromatid segregation // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // inferred from mutant phenotype /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from mutant phenotype /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051983 // regulation of chromosome segregation // inferred from mutant phenotype 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000776 // kinetochore // inferred from mutant phenotype /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0008201 // heparin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 349.95 800.83 7.72 0.00 0.00 -4.43
201999_s_at 201999_s_at NM_006519 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006519.1 /DEF=Homo sapiens t-complex-associated-testis-expressed 1-like 1 (TCTEL1), mRNA. /FEA=mRNA /GEN=TCTEL1 /PROD=t-complex-associated-testis-expressed 1-like 1 /DB_XREF=gi:5730084 /UG=Hs.266940 t-complex-associated-testis-expressed 1-like 1 /FL=gb:U56255.1 gb:D50663.1 gb:NM_006519.1 NM_006519 dynein, light chain, Tctex-type 1 DYNLT1 6993 NM_001291602 /// NM_001291603 /// NM_006519 /// XM_005267117 0000132 // establishment of mitotic spindle orientation // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019060 // intracellular transport of viral protein in host cell // inferred from mutant phenotype /// 0032314 // regulation of Rac GTPase activity // inferred from electronic annotation /// 0046718 // viral entry into host cell // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // inferred from electronic annotation /// 0075521 // microtubule-dependent intracellular transport of viral material towards nucleus // inferred from electronic annotation /// 0075606 // transport of viral material towards nucleus // inferred from electronic annotation /// 0075733 // intracellular transport of virus // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 198.97 650.99 7.72 0.00 0.00 -4.43
217945_at 217945_at NM_025238 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025238.1 /DEF=Homo sapiens BTB (POZ) domain containing 1 (BTBD1), mRNA. /FEA=mRNA /GEN=BTBD1 /PROD=BTB (POZ) domain containing 1 /DB_XREF=gi:13376847 /UG=Hs.21332 BTB (POZ) domain containing 1 /FL=gb:AL136853.1 gb:AF257241.1 gb:NM_025238.1 gb:AF355402.1 NM_025238 BTB (POZ) domain containing 1 BTBD1 53339 NM_001011885 /// NM_025238 /// XM_006720573 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043393 // regulation of protein binding // non-traceable author statement 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 93.05 248.45 7.72 0.00 0.00 -4.43
213449_at 213449_at D31765 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D31765.1 /DEF=Human mRNA for KIAA0061 gene, partial cds. /FEA=mRNA /GEN=KIAA0061 /DB_XREF=gi:498155 /UG=Hs.170114 KIAA0061 protein D31765 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) POP1 10940 NM_001145860 /// NM_001145861 /// NM_015029 0001682 // tRNA 5'-leader removal // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0016078 // tRNA catabolic process // inferred from direct assay /// 0090501 // RNA phosphodiester bond hydrolysis // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation 0000172 // ribonuclease MRP complex // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005655 // nucleolar ribonuclease P complex // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation 0000171 // ribonuclease MRP activity // inferred from direct assay /// 0004526 // ribonuclease P activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 67.75 53.25 7.71 0.00 0.00 -4.43
204567_s_at 204567_s_at NM_004915 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004915.2 /DEF=Homo sapiens ATP-binding cassette, sub-family G (WHITE), member 1 (ABCG1), transcript variant 1, mRNA. /FEA=mRNA /GEN=ABCG1 /PROD=ATP-binding cassette sub-family G member 1isoform a /DB_XREF=gi:8051574 /UG=Hs.10237 ATP-binding cassette, sub-family G (WHITE), member 1 /FL=gb:NM_004915.2 NM_004915 ATP-binding cassette, sub-family G (WHITE), member 1 ABCG1 9619 NM_004915 /// NM_016818 /// NM_207174 /// NM_207627 /// NM_207628 /// NM_207629 /// NM_207630 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from direct assay /// 0009720 // detection of hormone stimulus // non-traceable author statement /// 0010033 // response to organic substance // inferred from direct assay /// 0010745 // negative regulation of macrophage derived foam cell differentiation // traceable author statement /// 0010872 // regulation of cholesterol esterification // inferred from sequence or structural similarity /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // traceable author statement /// 0010888 // negative regulation of lipid storage // inferred from electronic annotation /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // inferred from mutant phenotype /// 0033344 // cholesterol efflux // inferred from direct assay /// 0033700 // phospholipid efflux // inferred from mutant phenotype /// 0033993 // response to lipid // inferred from direct assay /// 0034374 // low-density lipoprotein particle remodeling // inferred from sequence or structural similarity /// 0034375 // high-density lipoprotein particle remodeling // inferred from sequence or structural similarity /// 0034436 // glycoprotein transport // inferred from direct assay /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0042632 // cholesterol homeostasis // inferred from direct assay /// 0042987 // amyloid precursor protein catabolic process // inferred from direct assay /// 0043691 // reverse cholesterol transport // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from sequence or structural similarity /// 0055085 // transmembrane transport // traceable author statement /// 0055091 // phospholipid homeostasis // inferred from mutant phenotype /// 0055099 // response to high density lipoprotein particle // inferred from electronic annotation /// 1901998 // toxin transport // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred by curator /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred by curator /// 0005548 // phospholipid transporter activity // inferred from direct assay /// 0015485 // cholesterol binding // inferred by curator /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // inferred from direct assay /// 0017127 // cholesterol transporter activity // traceable author statement /// 0019534 // toxin transporter activity // inferred from direct assay /// 0034041 // sterol-transporting ATPase activity // inferred from direct assay /// 0034437 // glycoprotein transporter activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043531 // ADP binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // non-traceable author statement -193.50 138.85 -7.71 0.00 0.00 -4.43
218307_at 218307_at NM_018346 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018346.1 /DEF=Homo sapiens hypothetical protein FLJ11164 (FLJ11164), mRNA. /FEA=mRNA /GEN=FLJ11164 /PROD=hypothetical protein FLJ11164 /DB_XREF=gi:8922910 /UG=Hs.8033 hypothetical protein FLJ11164 /FL=gb:NM_018346.1 NM_018346 radical S-adenosyl methionine domain containing 1 RSAD1 55316 NM_018346 0006779 // porphyrin-containing compound biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004109 // coproporphyrinogen oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 101.58 89.81 7.70 0.00 0.00 -4.43
200921_s_at 200921_s_at NM_001731 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001731.1 /DEF=Homo sapiens B-cell translocation gene 1, anti-proliferative (BTG1), mRNA. /FEA=mRNA /GEN=BTG1 /PROD=B-cell translocation protein 1 /DB_XREF=gi:4502472 /UG=Hs.77054 B-cell translocation gene 1, anti-proliferative /FL=gb:NM_001731.1 NM_001731 B-cell translocation gene 1, anti-proliferative BTG1 694 NM_001731 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0016477 // cell migration // non-traceable author statement /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0045603 // positive regulation of endothelial cell differentiation // inferred from mutant phenotype /// 0045663 // positive regulation of myoblast differentiation // inferred from direct assay /// 0045663 // positive regulation of myoblast differentiation // non-traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 2000271 // positive regulation of fibroblast apoptotic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from mutant phenotype 0003712 // transcription cofactor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0019900 // kinase binding // non-traceable author statement -375.83 483.81 -7.70 0.00 0.00 -4.43
201065_s_at 201065_s_at NM_001518 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001518.1 /DEF=Homo sapiens general transcription factor II, i (GTF2I), mRNA. /FEA=mRNA /GEN=GTF2I /PROD=general transcription factor II, i /DB_XREF=gi:4504202 /UG=Hs.278589 general transcription factor II, i /FL=gb:U77948.1 gb:AF015553.1 gb:AF038969.1 gb:NM_001518.1 NM_001518 general transcription factor IIi /// general transcription factor IIi, pseudogene 1 /// general transcription factor II, i, pseudogene GTF2I /// GTF2IP1 /// LOC100093631 2969 /// 2970 /// 100093631 NM_001163636 /// NM_001280800 /// NM_001518 /// NM_032999 /// NM_033000 /// NM_033001 /// NR_002206 /// NR_003580 /// XM_005250291 /// XM_005250296 /// XM_006715939 /// XM_006715940 /// XM_006715941 /// XM_006715942 /// XM_006715943 /// XM_006715944 /// XM_006715945 /// XM_006715946 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0051481 // negative regulation of cytosolic calcium ion concentration // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0051019 // mitogen-activated protein kinase binding // inferred from electronic annotation 166.62 311.39 7.68 0.00 0.00 -4.43
222369_at 222369_at AW971254 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW971254 /FEA=EST /DB_XREF=gi:8161099 /DB_XREF=est:EST383343 /UG=Hs.178433 ESTs AW971254 N(alpha)-acetyltransferase 40, NatD catalytic subunit NAA40 79829 NM_024771 /// XM_005274295 /// XM_005274296 /// XM_006718689 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 61.52 55.84 7.67 0.00 0.00 -4.43
202128_at 202128_at NM_014821 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014821.1 /DEF=Homo sapiens KIAA0317 gene product (KIAA0317), mRNA. /FEA=mRNA /GEN=KIAA0317 /PROD=KIAA0317 gene product /DB_XREF=gi:7662051 /UG=Hs.20126 KIAA0317 gene product /FL=gb:AB002315.1 gb:NM_014821.1 NM_014821 apoptosis resistant E3 ubiquitin protein ligase 1 AREL1 9870 NM_001039479 /// NM_014821 /// XM_005268244 /// XM_006720344 0006915 // apoptotic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // not recorded /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation 81.50 139.78 7.67 0.00 0.00 -4.43
209250_at 209250_at BC000961 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000961.2 /DEF=Homo sapiens, degenerative spermatocyte (homolog Drosophila; lipid desaturase), clone MGC:5079, mRNA, complete cds. /FEA=mRNA /PROD=degenerative spermatocyte (homolog Drosophila;lipid desaturase) /DB_XREF=gi:12803018 /UG=Hs.185973 degenerative spermatocyte (homolog Drosophila; lipid desaturase) /FL=gb:BC000961.2 BC000961 delta(4)-desaturase, sphingolipid 1 DEGS1 8560 NM_003676 /// NM_144780 /// XM_006711839 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation 131.95 150.20 7.67 0.00 0.00 -4.43
201703_s_at 201703_s_at NM_002714 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002714.1 /DEF=Homo sapiens protein phosphatase 1, regulatory subunit 10 (PPP1R10), mRNA. /FEA=mRNA /GEN=PPP1R10 /PROD=protein phosphatase 1, regulatory subunit 10 /DB_XREF=gi:4506008 /UG=Hs.106019 protein phosphatase 1, regulatory subunit 10 /FL=gb:NM_002714.1 NM_002714 protein phosphatase 1, regulatory subunit 10 PPP1R10 5514 NM_002714 /// NR_072994 /// XM_006715130 /// XM_006715131 /// XM_006715132 /// XM_006715133 /// XM_006725489 /// XM_006725490 /// XM_006725491 /// XM_006725492 /// XM_006725703 /// XM_006725704 /// XM_006725705 /// XM_006725706 /// XM_006725820 /// XM_006725821 /// XM_006725822 /// XM_006725823 /// XM_006725912 /// XM_006725913 /// XM_006725914 /// XM_006725915 /// XM_006726005 /// XM_006726006 /// XM_006726007 /// XM_006726008 /// XM_006726100 /// XM_006726101 /// XM_006726102 /// XM_006726103 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006606 // protein import into nucleus // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation 0000785 // chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -118.40 247.32 -7.66 0.00 0.00 -4.43
208774_at 208774_at AV700224 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV700224 /FEA=EST /DB_XREF=gi:10302195 /DB_XREF=est:AV700224 /CLONE=GKCARG01 /UG=Hs.75852 casein kinase 1, delta /FL=gb:BC003558.1 AV700224 casein kinase 1, delta CSNK1D 1453 NM_001893 /// NM_139062 /// NR_110578 /// XM_005256336 /// XM_005256337 /// XR_243518 /// XR_430027 /// XR_430028 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006281 // DNA repair // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0048511 // rhythmic process // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0050321 // tau-protein kinase activity // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from electronic annotation 192.22 132.36 7.66 0.00 0.00 -4.43
203512_at 203512_at NM_014408 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014408.1 /DEF=Homo sapiens similar to yeast BET3 (S. cerevisiae) (BET3), mRNA. /FEA=mRNA /GEN=BET3 /PROD=similar to yeast BET3 (S. cerevisiae) /DB_XREF=gi:7656925 /UG=Hs.288013 similar to yeast BET3 (S. cerevisiae) /FL=gb:AF041432.1 gb:NM_014408.1 NM_014408 trafficking protein particle complex 3 TRAPPC3 27095 NM_001270894 /// NM_001270895 /// NM_001270896 /// NM_001270897 /// NM_014408 /// NR_073097 /// NR_073098 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0030008 // TRAPP complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 91.33 129.69 7.65 0.00 0.00 -4.43
202271_at 202271_at AB007952 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB007952.1 /DEF=Homo sapiens mRNA for KIAA0483 protein, partial cds. /FEA=mRNA /GEN=KIAA0483 /PROD=KIAA0483 protein /DB_XREF=gi:3413925 /UG=Hs.64691 KIAA0483 protein /FL=gb:NM_015176.1 AB007952 F-box protein 28 FBXO28 23219 NM_001136115 /// NM_015176 /// NR_049764 0005515 // protein binding // inferred from electronic annotation 104.70 207.35 7.65 0.00 0.00 -4.43
212993_at 212993_at AA114166 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA114166 /FEA=EST /DB_XREF=gi:1668052 /DB_XREF=est:zn75c03.s1 /CLONE=IMAGE:564004 /UG=Hs.23964 sin3-associated polypeptide, 18kD AA114166 NACC family member 2, BEN and BTB (POZ) domain containing NACC2 138151 NM_144653 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010608 // posttranscriptional regulation of gene expression // inferred from mutant phenotype /// 0016575 // histone deacetylation // inferred from direct assay /// 0034629 // cellular protein complex localization // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 1900477 // negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 1902231 // positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from direct assay 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0016581 // NuRD complex // inferred from direct assay /// 0016604 // nuclear body // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001076 // RNA polymerase II transcription factor binding transcription factor activity // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0004407 // histone deacetylase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042826 // histone deacetylase binding // inferred from physical interaction 68.52 86.06 7.63 0.00 0.00 -4.43
211423_s_at 211423_s_at D85181 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D85181.1 /DEF=Homo sapiens mRNA for fungal sterol-C5-desaturase homolog, complete cds. /FEA=mRNA /PROD=fungal sterol-C5-desaturase homolog /DB_XREF=gi:1906795 /UG=Hs.288031 sterol-C5-desaturase (fungal ERG3, delta-5-desaturase)-like /FL=gb:D85181.1 D85181 sterol-C5-desaturase SC5D 6309 NM_001024956 /// NM_006918 0006629 // lipid metabolic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0033490 // cholesterol biosynthetic process via lathosterol // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000248 // C-5 sterol desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050046 // lathosterol oxidase activity // inferred from electronic annotation 149.03 157.26 7.62 0.00 0.00 -4.43
205335_s_at 205335_s_at NM_003135 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003135.1 /DEF=Homo sapiens signal recognition particle 19kD (SRP19), mRNA. /FEA=mRNA /GEN=SRP19 /PROD=signal recognition particle 19kD /DB_XREF=gi:4507212 /UG=Hs.2943 signal recognition particle 19kD /FL=gb:NM_003135.1 NM_003135 signal recognition particle 19kDa SRP19 6728 NM_001204193 /// NM_001204194 /// NM_001204196 /// NM_001204199 /// NM_003135 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0042493 // response to drug // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 92.60 317.40 7.61 0.00 0.00 -4.43
202769_at 202769_at AW134535 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW134535 /FEA=EST /DB_XREF=gi:6138088 /DB_XREF=est:UI-H-BI1-abv-g-06-0-UI.s1 /CLONE=IMAGE:2713163 /UG=Hs.79069 cyclin G2 /FL=gb:U47414.1 gb:NM_004354.1 AW134535 cyclin G2 CCNG2 901 NM_004354 0000075 // cell cycle checkpoint // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation -185.97 161.51 -7.60 0.00 0.00 -4.43
209378_s_at 209378_s_at AI478879 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI478879 /FEA=EST /DB_XREF=gi:4372047 /DB_XREF=est:tm25a06.x1 /CLONE=IMAGE:2157586 /UG=Hs.81897 KIAA1128 protein /FL=gb:AF241785.1 AI478879 coiled-coil serine-rich protein 2 CCSER2 54462 NM_001284240 /// NM_001284241 /// NM_001284242 /// NM_001284243 /// NM_018999 /// XM_005269905 /// XM_005269906 /// XM_005269908 /// XM_006717894 /// XM_006717895 0001578 // microtubule bundle formation // inferred from electronic annotation 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0008017 // microtubule binding // inferred from electronic annotation -97.47 113.81 -7.59 0.00 0.00 -4.43
201920_at 201920_at NM_005415 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005415.2 /DEF=Homo sapiens solute carrier family 20 (phosphate transporter), member 1 (SLC20A1), mRNA. /FEA=mRNA /GEN=SLC20A1 /PROD=solute carrier family 20 (phosphatetransporter), member 1 /DB_XREF=gi:7382462 /UG=Hs.78452 solute carrier family 20 (phosphate transporter), member 1 /FL=gb:L20859.1 gb:NM_005415.2 NM_005415 solute carrier family 20 (phosphate transporter), member 1 SLC20A1 6574 NM_005415 /// XM_005263743 /// XM_006712712 0006796 // phosphate-containing compound metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0035435 // phosphate ion transmembrane transport // inferred from electronic annotation /// 0035435 // phosphate ion transmembrane transport // traceable author statement /// 0035725 // sodium ion transmembrane transport // inferred from electronic annotation /// 0035725 // sodium ion transmembrane transport // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from mutant phenotype /// 0004872 // receptor activity // traceable author statement /// 0005315 // inorganic phosphate transmembrane transporter activity // inferred from electronic annotation /// 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from electronic annotation /// 0005436 // sodium:phosphate symporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 290.00 536.40 7.59 0.00 0.00 -4.43
201984_s_at 201984_s_at NM_005228 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005228.1 /DEF=Homo sapiens epidermal growth factor receptor (avian erythroblastic leukemia viral (v-erb-b) oncogene homolog) (EGFR), mRNA. /FEA=mRNA /GEN=EGFR /PROD=epidermal growth factor receptor (avianerythroblastic leukemia viral (v-erb-b) oncogene homolog) /DB_XREF=gi:4885198 /UG=Hs.77432 epidermal growth factor receptor (avian erythroblastic leukemia viral (v-erb-b) oncogene homolog) /FL=gb:NM_005228.1 NM_005228 epidermal growth factor receptor EGFR 1956 NM_005228 /// NM_201282 /// NM_201283 /// NM_201284 0000165 // MAPK cascade // non-traceable author statement /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001503 // ossification // non-traceable author statement /// 0001889 // liver development // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001942 // hair follicle development // inferred from electronic annotation /// 0005976 // polysaccharide metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // non-traceable author statement /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from direct assay /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008544 // epidermis development // inferred from electronic annotation /// 0010960 // magnesium ion homeostasis // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016101 // diterpenoid metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0019694 // alkanesulfonate metabolic process // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031659 // positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032930 // positive regulation of superoxide anion generation // inferred from electronic annotation /// 0033590 // response to cobalamin // inferred from electronic annotation /// 0033594 // response to hydroxyisoflavone // inferred from electronic annotation /// 0033993 // response to lipid // inferred from electronic annotation /// 0035413 // positive regulation of catenin import into nucleus // inferred from mutant phenotype /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from direct assay /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0042698 // ovulation cycle // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // inferred from electronic annotation /// 0043006 // activation of phospholipase A2 activity by calcium-mediated signaling // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043586 // tongue development // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045739 // positive regulation of DNA repair // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045909 // positive regulation of vasodilation // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048143 // astrocyte activation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048546 // digestive tract morphogenesis // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0050999 // regulation of nitric-oxide synthase activity // inferred from direct assay /// 0051205 // protein insertion into membrane // traceable author statement /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0060571 // morphogenesis of an epithelial fold // inferred from electronic annotation /// 0070141 // response to UV-A // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from sequence or structural similarity /// 0071392 // cellular response to estradiol stimulus // inferred from direct assay /// 0071549 // cellular response to dexamethasone stimulus // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // non-traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // traceable author statement /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070435 // Shc-EGFR complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // non-traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // non-traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from mutant phenotype /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from direct assay /// 0005006 // epidermal growth factor-activated receptor activity // inferred from direct assay /// 0005006 // epidermal growth factor-activated receptor activity // non-traceable author statement /// 0005102 // receptor binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0030235 // nitric-oxide synthase regulator activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048408 // epidermal growth factor binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay -72.65 88.67 -7.58 0.00 0.00 -4.43
202716_at 202716_at NM_002827 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002827.1 /DEF=Homo sapiens protein tyrosine phosphatase, non-receptor type 1 (PTPN1), mRNA. /FEA=mRNA /GEN=PTPN1 /PROD=protein tyrosine phosphatase, non-receptor type1 /DB_XREF=gi:4506288 /UG=Hs.155894 protein tyrosine phosphatase, non-receptor type 1 /FL=gb:M33689.1 gb:M31724.1 gb:NM_002827.1 NM_002827 protein tyrosine phosphatase, non-receptor type 1 PTPN1 5770 NM_001278618 /// NM_002827 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from mutant phenotype /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030100 // regulation of endocytosis // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from direct assay /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 0035791 // platelet-derived growth factor receptor-beta signaling pathway // inferred from mutant phenotype /// 0046626 // regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // non-traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060338 // regulation of type I interferon-mediated signaling pathway // traceable author statement /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // traceable author statement /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 1902202 // regulation of hepatocyte growth factor receptor signaling pathway // inferred from mutant phenotype /// 1990264 // peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity // inferred from sequence or structural similarity 0005769 // early endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0097443 // sorting endosome // inferred from sequence or structural similarity 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046875 // ephrin receptor binding // inferred from physical interaction 81.15 145.78 7.58 0.00 0.00 -4.43
203439_s_at 203439_s_at BC000658 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000658.1 /DEF=Homo sapiens, stanniocalcin 2, clone MGC:1881, mRNA, complete cds. /FEA=mRNA /PROD=stanniocalcin 2 /DB_XREF=gi:12653744 /UG=Hs.155223 stanniocalcin 2 /FL=gb:BC000658.1 gb:AF055460.1 gb:AB012664.1 gb:AF098462.1 gb:AF031036.1 gb:NM_003714.1 BC000658 stanniocalcin 2 STC2 8614 NM_003714 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007584 // response to nutrient // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 2001256 // regulation of store-operated calcium entry // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -224.38 209.46 -7.57 0.00 0.00 -4.43
217127_at 217127_at AL354872 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL354872 /DEF=Human DNA sequence from clone RP11-42O15 on chromosome 1. Contains ESTs, STSs, GSSs and a CpG island. Contains the CTH gene for two isoforms of cystathionase (cystathionine gamma-lyase) and a CHORD containing protein 1 (CHP1) pseudogene /FEA=mRNA_1 /DB_XREF=gi:9717070 /UG=Hs.19904 cystathionase (cystathionine gamma-lyase) AL354872 cystathionine gamma-lyase CTH 1491 NM_001190463 /// NM_001902 /// NM_153742 /// XM_005270509 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0000098 // sulfur amino acid catabolic process // traceable author statement /// 0006534 // cysteine metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0018272 // protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine // inferred from direct assay /// 0019344 // cysteine biosynthetic process // inferred from direct assay /// 0019344 // cysteine biosynthetic process // inferred from electronic annotation /// 0019346 // transsulfuration // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0044524 // protein sulfhydration // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from physical interaction /// 0070814 // hydrogen sulfide biosynthetic process // inferred from direct assay /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004123 // cystathionine gamma-lyase activity // inferred from direct assay /// 0004123 // cystathionine gamma-lyase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016846 // carbon-sulfur lyase activity // traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0044540 // L-cystine L-cysteine-lyase (deaminating) // inferred from mutant phenotype /// 0047982 // homocysteine desulfhydrase activity // traceable author statement /// 0080146 // L-cysteine desulfhydrase activity // traceable author statement -69.65 58.93 -7.57 0.00 0.00 -4.43
205005_s_at 205005_s_at AW293531 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW293531 /FEA=EST /DB_XREF=gi:6700167 /DB_XREF=est:UI-H-BI2-ahq-d-03-0-UI.s1 /CLONE=IMAGE:2727604 /UG=Hs.122647 N-myristoyltransferase 2 /FL=gb:AF043325.1 gb:NM_004808.1 AW293531 N-myristoyltransferase 2 NMT2 9397 NM_004808 /// XM_005252642 /// XM_005252643 /// XM_006717539 0006499 // N-terminal protein myristoylation // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0009249 // protein lipoylation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0003824 // catalytic activity // traceable author statement /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 124.77 209.84 7.57 0.00 0.00 -4.43
212508_at 212508_at AK024029 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024029.1 /DEF=Homo sapiens cDNA FLJ13967 fis, clone Y79AA1001402, weakly similar to Homo sapiens paraneoplastic cancer-testis-brain antigen (MA4) mRNA. /FEA=mRNA /DB_XREF=gi:10436287 /UG=Hs.24719 modulator of apoptosis 1 /FL=gb:AF305550.1 gb:NM_022151.1 AK024029 modulator of apoptosis 1 MOAP1 64112 NM_022151 0001844 // protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // inferred from direct assay /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype /// 0030262 // apoptotic nuclear changes // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0097190 // apoptotic signaling pathway // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 61.27 38.96 7.57 0.00 0.00 -4.43
220924_s_at 220924_s_at NM_018976 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018976.1 /DEF=Homo sapiens amino acid transporter 2 (KIAA1382), mRNA. /FEA=mRNA /GEN=KIAA1382 /PROD=amino acid transporter 2 /DB_XREF=gi:9506836 /UG=Hs.298275 amino acid transporter 2 /FL=gb:NM_018976.1 NM_018976 solute carrier family 38, member 2 SLC38A2 54407 NM_018976 /// XM_005268983 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0014047 // glutamate secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation -945.80 1723.42 -7.56 0.00 0.00 -4.43
201129_at 201129_at NM_006276 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006276.2 /DEF=Homo sapiens splicing factor, arginineserine-rich 7 (35kD) (SFRS7), mRNA. /FEA=mRNA /GEN=SFRS7 /PROD=splicing factor, arginineserine-rich 7 (35kD) /DB_XREF=gi:6857827 /UG=Hs.184167 splicing factor, arginineserine-rich 7 (35kD) /FL=gb:BC000997.2 gb:L22253.1 gb:NM_006276.2 NM_006276 serine/arginine-rich splicing factor 7 SRSF7 6432 NM_001031684 /// NM_001195446 /// NM_006276 /// XM_005264484 /// XM_005264485 /// XM_005264486 /// XR_426994 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 74.08 141.41 7.55 0.00 0.00 -4.43
203580_s_at 203580_s_at NM_003983 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003983.1 /DEF=Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 (SLC7A6), mRNA. /FEA=mRNA /GEN=SLC7A6 /PROD=solute carrier family 7 (cationic amino acidtransporter, y+ system), member 6 /DB_XREF=gi:4507052 /UG=Hs.10315 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 /FL=gb:D87432.1 gb:NM_003983.1 NM_003983 solute carrier family 7 (amino acid transporter light chain, y+L system), member 6 SLC7A6 9057 NM_001076785 /// NM_003983 /// XR_243433 /// XR_429735 /// XR_429736 /// XR_429737 /// XR_429738 /// XR_429739 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 129.00 132.28 7.55 0.00 0.00 -4.43
202670_at 202670_at AI571419 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI571419 /FEA=EST /DB_XREF=gi:4534793 /DB_XREF=est:tn45h10.x1 /CLONE=IMAGE:2170627 /UG=Hs.3446 mitogen-activated protein kinase kinase 1 /FL=gb:L05624.1 gb:NM_002755.1 AI571419 mitogen-activated protein kinase kinase 1 MAP2K1 5604 NM_002755 /// XM_005254541 /// XM_006720608 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0003056 // regulation of vascular smooth muscle contraction // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0032320 // positive regulation of Ras GTPase activity // inferred from electronic annotation /// 0032402 // melanosome transport // inferred from electronic annotation /// 0032872 // regulation of stress-activated MAPK cascade // traceable author statement /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0034111 // negative regulation of homotypic cell-cell adhesion // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0047496 // vesicle transport along microtubule // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048313 // Golgi inheritance // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048870 // cell motility // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0060711 // labyrinthine layer development // inferred from electronic annotation /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 0090170 // regulation of Golgi inheritance // traceable author statement /// 0090398 // cellular senescence // inferred from mutant phenotype /// 2000641 // regulation of early endosome to late endosome transport // traceable author statement 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005769 // early endosome // traceable author statement /// 0005770 // late endosome // traceable author statement /// 0005794 // Golgi apparatus // traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005816 // spindle pole body // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004708 // MAP kinase kinase activity // inferred from direct assay /// 0004712 // protein serine/threonine/tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004728 // receptor signaling protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017016 // Ras GTPase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation /// 0043539 // protein serine/threonine kinase activator activity // inferred from direct assay -266.03 403.01 -7.55 0.00 0.00 -4.43
218283_at 218283_at NM_016305 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016305.1 /DEF=Homo sapiens kiaa-iso protein (LOC51188), mRNA. /FEA=mRNA /GEN=LOC51188 /PROD=kiaa-iso protein /DB_XREF=gi:10047103 /UG=Hs.9774 kiaa-iso protein /FL=gb:NM_016305.1 gb:AF201950.1 NM_016305 synovial sarcoma translocation gene on chromosome 18-like 2 SS18L2 51188 NM_016305 83.40 111.22 7.54 0.00 0.00 -4.43
201616_s_at 201616_s_at AL577531 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL577531 /FEA=EST /DB_XREF=gi:12940753 /DB_XREF=est:AL577531 /CLONE=CS0DI087YP20 (3 prime) /UG=Hs.325474 caldesmon 1 /FL=gb:NM_004342.2 gb:M64110.1 AL577531 caldesmon 1 CALD1 800 NM_004342 /// NM_033138 /// NM_033139 /// NM_033140 /// NM_033157 /// XM_006716136 /// XM_006716137 /// XM_006716138 /// XM_006716139 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030478 // actin cap // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // traceable author statement /// 0017022 // myosin binding // inferred from electronic annotation -240.00 555.35 -7.53 0.00 0.00 -4.43
208726_s_at 208726_s_at BC000461 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000461.1 /DEF=Homo sapiens, eukaryotic translation initiation factor 2, subunit 2 (beta, 38kD ), clone MGC:8508, mRNA, complete cds. /FEA=mRNA /PROD=eukaryotic translation initiation factor 2,subunit 2 (beta, 38kD ) /DB_XREF=gi:12653382 /UG=Hs.12163 eukaryotic translation initiation factor 2, subunit 2 (beta, 38kD ) /FL=gb:BC000461.1 gb:BC000934.2 gb:M29536.1 gb:NM_003908.1 BC000461 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa EIF2S2 8894 NM_003908 /// XM_005260605 0001701 // in utero embryonic development // inferred from electronic annotation /// 0002176 // male germ cell proliferation // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0008584 // male gonad development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005850 // eukaryotic translation initiation factor 2 complex // traceable author statement 0003723 // RNA binding // traceable author statement /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -288.10 908.15 -7.53 0.00 0.00 -4.43
202975_s_at 202975_s_at N21138 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N21138 /FEA=EST /DB_XREF=gi:1126308 /DB_XREF=est:yx52h03.s1 /CLONE=IMAGE:265397 /UG=Hs.188006 KIAA0878 protein /FL=gb:AB020685.1 gb:NM_014899.1 N21138 Rho-related BTB domain containing 3 RHOBTB3 22836 NM_014899 0006200 // ATP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from physical interaction 125.25 161.75 7.53 0.00 0.00 -4.43
217955_at 217955_at NM_015367 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015367.1 /DEF=Homo sapiens MIL1 protein (MIL1), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=MIL1 /PROD=MIL1 protein /DB_XREF=gi:7662505 /UG=Hs.10267 MIL1 protein /FL=gb:AF325209.1 gb:AF146568.1 gb:NM_015367.1 NM_015367 BCL2-like 13 (apoptosis facilitator) BCL2L13 23786 NM_001270726 /// NM_001270727 /// NM_001270728 /// NM_001270729 /// NM_001270730 /// NM_001270731 /// NM_001270732 /// NM_001270733 /// NM_001270734 /// NM_001270735 /// NM_015367 /// NR_073068 /// NR_073069 /// XM_006724075 /// XM_006724076 /// XR_430391 0006915 // apoptotic process // non-traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // non-traceable author statement /// 0042981 // regulation of apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // non-traceable author statement -79.50 179.93 -7.51 0.00 0.00 -4.43
35617_at 35617_at U29725 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U29725:Human BMK1 alpha kinase mRNA, complete cds /cds=(221,2671) /gb=U29725 /gi=973306 /ug=Hs.3080 /len=2980 U29725 mitogen-activated protein kinase 7 MAPK7 5598 NM_002749 /// NM_139032 /// NM_139033 /// NM_139034 /// XM_005256719 /// XM_006721557 /// XM_006721558 /// XM_006721559 /// XM_006721560 0000165 // MAPK cascade // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // non-traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030821 // negative regulation of cAMP catabolic process // non-traceable author statement /// 0034115 // negative regulation of heterotypic cell-cell adhesion // inferred from genetic interaction /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0036003 // positive regulation of transcription from RNA polymerase II promoter in response to stress // inferred from mutant phenotype /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050728 // negative regulation of inflammatory response // traceable author statement /// 0051247 // positive regulation of protein metabolic process // inferred from genetic interaction /// 0051344 // negative regulation of cyclic-nucleotide phosphodiesterase activity // non-traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051534 // negative regulation of NFAT protein import into nucleus // inferred from electronic annotation /// 0060761 // negative regulation of response to cytokine stimulus // inferred from genetic interaction /// 0070301 // cellular response to hydrogen peroxide // inferred from mutant phenotype /// 0071363 // cellular response to growth factor stimulus // inferred from genetic interaction /// 0071499 // cellular response to laminar fluid shear stress // inferred from mutant phenotype /// 0071499 // cellular response to laminar fluid shear stress // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from direct assay /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from mutant phenotype /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from genetic interaction 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016605 // PML body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from physical interaction -82.25 122.83 -7.49 0.00 0.00 -4.43
209945_s_at 209945_s_at BC000251 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000251.1 /DEF=Homo sapiens, Similar to glycogen synthase kinase 3 beta, clone MGC:1736, mRNA, complete cds. /FEA=mRNA /PROD=Similar to glycogen synthase kinase 3 beta /DB_XREF=gi:12652980 /UG=Hs.78802 glycogen synthase kinase 3 beta /FL=gb:BC000251.1 BC000251 glycogen synthase kinase 3 beta GSK3B 2932 NM_001146156 /// NM_002093 /// XM_006713610 /// XM_006713611 0000320 // re-entry into mitotic cell cycle // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from mutant phenotype /// 0001954 // positive regulation of cell-matrix adhesion // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from direct assay /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006983 // ER overload response // inferred from direct assay /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007520 // myoblast fusion // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0010226 // response to lithium ion // inferred from electronic annotation /// 0010614 // negative regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0014902 // myotube differentiation // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0021766 // hippocampus development // inferred from mutant phenotype /// 0030010 // establishment of cell polarity // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031333 // negative regulation of protein complex assembly // inferred from mutant phenotype /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032092 // positive regulation of protein binding // inferred from sequence or structural similarity /// 0032855 // positive regulation of Rac GTPase activity // inferred from mutant phenotype /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0035372 // protein localization to microtubule // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0036016 // cellular response to interleukin-3 // inferred from sequence or structural similarity /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0044027 // hypermethylation of CpG island // inferred from electronic annotation /// 0044337 // canonical Wnt signaling pathway involved in positive regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045719 // negative regulation of glycogen biosynthetic process // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred by curator /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046827 // positive regulation of protein export from nucleus // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050774 // negative regulation of dendrite morphogenesis // inferred from electronic annotation /// 0051534 // negative regulation of NFAT protein import into nucleus // inferred from mutant phenotype /// 0060070 // canonical Wnt signaling pathway // inferred by curator /// 0060070 // canonical Wnt signaling pathway // inferred from direct assay /// 0071109 // superior temporal gyrus development // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // traceable author statement /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from sequence or structural similarity /// 1901030 // positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway // inferred from sequence or structural similarity /// 2000077 // negative regulation of type B pancreatic cell development // traceable author statement /// 2000466 // negative regulation of glycogen (starch) synthase activity // traceable author statement /// 2000738 // positive regulation of stem cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // inferred from direct assay /// 0030877 // beta-catenin destruction complex // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043227 // membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0002039 // p53 binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from direct assay /// 0016301 // kinase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0048156 // tau protein binding // inferred from electronic annotation /// 0050321 // tau-protein kinase activity // inferred from direct assay /// 0051059 // NF-kappaB binding // inferred from physical interaction -66.95 143.25 -7.49 0.00 0.00 -4.43
204602_at 204602_at NM_012242 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012242.1 /DEF=Homo sapiens dickkopf (Xenopus laevis) homolog 1 (DKK1), mRNA. /FEA=mRNA /GEN=DKK1 /PROD=dickkopf (Xenopus laevis) homolog 1 /DB_XREF=gi:7110718 /UG=Hs.40499 dickkopf (Xenopus laevis) homolog 1 /FL=gb:AF127563.1 gb:AF177394.1 gb:NM_012242.1 NM_012242 dickkopf WNT signaling pathway inhibitor 1 DKK1 22943 NM_012242 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0002090 // regulation of receptor internalization // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from direct assay /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0031333 // negative regulation of protein complex assembly // inferred from direct assay /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0042662 // negative regulation of mesodermal cell fate specification // inferred from direct assay /// 0042663 // regulation of endodermal cell fate specification // inferred from direct assay /// 0048642 // negative regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0060323 // head morphogenesis // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0090082 // positive regulation of heart induction by negative regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from genetic interaction /// 0090244 // Wnt signaling pathway involved in somitogenesis // inferred from electronic annotation /// 1900116 // extracellular negative regulation of signal transduction // inferred from direct assay /// 1901296 // negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment // inferred from direct assay /// 2000726 // negative regulation of cardiac muscle cell differentiation // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // traceable author statement /// 0048019 // receptor antagonist activity // inferred from direct assay /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay 408.73 617.11 7.49 0.00 0.00 -4.43
200623_s_at 200623_s_at NM_005184 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005184.1 /DEF=Homo sapiens calmodulin 3 (phosphorylase kinase, delta) (CALM3), mRNA. /FEA=mRNA /GEN=CALM3 /PROD=calmodulin 3 (phosphorylase kinase, delta) /DB_XREF=gi:4885108 /UG=Hs.141011 calmodulin 3 (phosphorylase kinase, delta) /FL=gb:BC005137.1 gb:J04046.1 gb:NM_005184.1 NM_005184 calmodulin 1 (phosphorylase kinase, delta) /// calmodulin 2 (phosphorylase kinase, delta) /// calmodulin 3 (phosphorylase kinase, delta) CALM1 /// CALM2 /// CALM3 801 /// 805 /// 808 NM_001166106 /// NM_001743 /// NM_005184 /// NM_006888 /// XM_006720258 0001975 // response to amphetamine // inferred from electronic annotation /// 0002027 // regulation of heart rate // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0005513 // detection of calcium ion // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030801 // positive regulation of cyclic nucleotide metabolic process // inferred from direct assay /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from electronic annotation /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred by curator 0000922 // spindle pole // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0030017 // sarcomere // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0031432 // titin binding // inferred from physical interaction /// 0031800 // type 3 metabotropic glutamate receptor binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0031997 // N-terminal myristoylation domain binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0072542 // protein phosphatase activator activity // inferred from direct assay 137.70 373.68 7.48 0.00 0.00 -4.43
219007_at 219007_at NM_024647 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024647.1 /DEF=Homo sapiens hypothetical protein FLJ13287 (FLJ13287), mRNA. /FEA=mRNA /GEN=FLJ13287 /PROD=hypothetical protein FLJ13287 /DB_XREF=gi:13375888 /UG=Hs.53263 hypothetical protein FLJ13287 /FL=gb:NM_024647.1 NM_024647 nucleoporin 43kDa NUP43 348995 NM_024647 /// NM_198887 /// NR_104456 /// XM_005266960 /// XM_005266961 /// XM_005266962 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0031080 // nuclear pore outer ring // inferred from direct assay /// 0031080 // nuclear pore outer ring // non-traceable author statement 0005515 // protein binding // inferred from physical interaction 96.42 84.34 7.48 0.00 0.00 -4.43
211984_at 211984_at AI653730 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI653730 /FEA=EST /DB_XREF=gi:4737709 /DB_XREF=est:wb36f12.x1 /CLONE=IMAGE:2307791 /UG=Hs.279009 matrix Gla protein AI653730 calmodulin 1 (phosphorylase kinase, delta) /// calmodulin 2 (phosphorylase kinase, delta) /// calmodulin 3 (phosphorylase kinase, delta) CALM1 /// CALM2 /// CALM3 801 /// 805 /// 808 NM_001166106 /// NM_001743 /// NM_005184 /// NM_006888 /// XM_006720258 0001975 // response to amphetamine // inferred from electronic annotation /// 0002027 // regulation of heart rate // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0005513 // detection of calcium ion // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030801 // positive regulation of cyclic nucleotide metabolic process // inferred from direct assay /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from electronic annotation /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred by curator 0000922 // spindle pole // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0030017 // sarcomere // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0031432 // titin binding // inferred from physical interaction /// 0031800 // type 3 metabotropic glutamate receptor binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0031997 // N-terminal myristoylation domain binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0072542 // protein phosphatase activator activity // inferred from direct assay 220.95 504.40 7.47 0.00 0.00 -4.43
200759_x_at 200759_x_at NM_003204 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003204.1 /DEF=Homo sapiens nuclear factor (erythroid-derived 2)-like 1 (NFE2L1), mRNA. /FEA=mRNA /GEN=NFE2L1 /PROD=transcription factor 11 (basic leucine zippertype) /DB_XREF=gi:4505378 /UG=Hs.83469 nuclear factor (erythroid-derived 2)-like 1 /FL=gb:NM_003204.1 gb:U08853.1 NM_003204 nuclear factor, erythroid 2-like 1 NFE2L1 4779 NM_003204 /// XM_005257410 /// XM_005257411 /// XM_005257412 /// XM_005257413 /// XM_005257415 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006783 // heme biosynthetic process // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -580.90 875.33 -7.47 0.00 0.00 -4.43
202531_at 202531_at NM_002198 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002198.1 /DEF=Homo sapiens interferon regulatory factor 1 (IRF1), mRNA. /FEA=mRNA /GEN=IRF1 /PROD=interferon regulatory factor 1 /DB_XREF=gi:4504720 /UG=Hs.80645 interferon regulatory factor 1 /FL=gb:NM_002198.1 NM_002198 interferon regulatory factor 1 IRF1 3659 NM_002198 /// XR_427711 0002376 // immune system process // inferred from electronic annotation /// 0002819 // regulation of adaptive immune response // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007596 // blood coagulation // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0032481 // positive regulation of type I interferon production // inferred from sequence or structural similarity /// 0032728 // positive regulation of interferon-beta production // inferred from mutant phenotype /// 0034124 // regulation of MyD88-dependent toll-like receptor signaling pathway // inferred from sequence or structural similarity /// 0035458 // cellular response to interferon-beta // inferred from direct assay /// 0043374 // CD8-positive, alpha-beta T cell differentiation // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045088 // regulation of innate immune response // traceable author statement /// 0045590 // negative regulation of regulatory T cell differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from direct assay /// 0051726 // regulation of cell cycle // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // inferred from sequence or structural similarity /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 2000564 // regulation of CD8-positive, alpha-beta T cell proliferation // inferred from sequence or structural similarity 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement 0000975 // regulatory region DNA binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -100.53 117.79 -7.47 0.00 0.00 -4.43
214179_s_at 214179_s_at H93013 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:H93013 /FEA=EST /DB_XREF=gi:1099341 /DB_XREF=est:yv07g07.s1 /CLONE=IMAGE:242076 /UG=Hs.83469 nuclear factor (erythroid-derived 2)-like 1 H93013 nuclear factor, erythroid 2-like 1 NFE2L1 4779 NM_003204 /// XM_005257410 /// XM_005257411 /// XM_005257412 /// XM_005257413 /// XM_005257415 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006783 // heme biosynthetic process // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -250.30 381.40 -7.47 0.00 0.00 -4.43
203460_s_at 203460_s_at NM_007318 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007318.1 /DEF=Homo sapiens presenilin 1 (Alzheimer disease 3) (PSEN1), transcript variant I-463, mRNA. /FEA=mRNA /GEN=PSEN1 /PROD=presenilin 1 isoform I-463 /DB_XREF=gi:7549812 /UG=Hs.3260 presenilin 1 (Alzheimer disease 3) /FL=gb:U40379.1 gb:L76517.1 gb:NM_007318.1 NM_007318 presenilin 1 PSEN1 5663 NM_000021 /// NM_007318 /// NM_007319 /// XM_005267864 /// XM_005267866 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0002244 // hematopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002286 // T cell activation involved in immune response // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007175 // negative regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007220 // Notch receptor processing // not recorded /// 0007220 // Notch receptor processing // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007611 // learning or memory // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0015871 // choline transport // inferred from electronic annotation /// 0016080 // synaptic vesicle targeting // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from mutant phenotype /// 0016485 // protein processing // inferred from direct assay /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021870 // Cajal-Retzius cell differentiation // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from direct assay /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from genetic interaction /// 0034205 // beta-amyloid formation // inferred from electronic annotation /// 0035282 // segmentation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0040011 // locomotion // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // inferred from direct assay /// 0042640 // anagen // inferred from electronic annotation /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0042987 // amyloid precursor protein catabolic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048538 // thymus development // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0050435 // beta-amyloid metabolic process // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from electronic annotation /// 0050820 // positive regulation of coagulation // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0051444 // negative regulation of ubiquitin-protein transferase activity // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // not recorded /// 0051604 // protein maturation // inferred from electronic annotation /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // /// 0060075 // regulation of resting membrane potential // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // inferred from mutant phenotype /// 2000059 // negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005765 // lysosomal membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005790 // smooth endoplasmic reticulum // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005938 // cell cortex // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // traceable author statement /// 0016324 // apical plasma membrane // not recorded /// 0030018 // Z disc // not recorded /// 0030424 // axon // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0031965 // nuclear membrane // inferred from direct assay /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // not recorded /// 0043227 // membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070765 // gamma-secretase complex // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0045296 // cadherin binding // not recorded -129.90 215.05 -7.46 0.00 0.00 -4.43
218361_at 218361_at NM_018178 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018178.1 /DEF=Homo sapiens hypothetical protein FLJ10687 (FLJ10687), mRNA. /FEA=mRNA /GEN=FLJ10687 /PROD=hypothetical protein FLJ10687 /DB_XREF=gi:8922588 /UG=Hs.29379 hypothetical protein FLJ10687 /FL=gb:NM_018178.1 NM_018178 golgi phosphoprotein 3-like GOLPH3L 55204 NM_018178 /// XM_006711428 0007030 // Golgi organization // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype 0000139 // Golgi membrane // inferred by curator /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred by curator 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0070273 // phosphatidylinositol-4-phosphate binding // inferred from direct assay -235.20 275.80 -7.46 0.00 0.00 -4.43
221539_at 221539_at AB044548 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB044548.1 /DEF=Homo sapiens POKcl.6 mRNA for eukaryotic translation initiation factor 4E binding protein 1, complete cds. /FEA=mRNA /GEN=POKcl.6 /PROD=eukaryotic translation initiation factor 4Ebinding protein 1 /DB_XREF=gi:11527778 /UG=Hs.71819 eukaryotic translation initiation factor 4E binding protein 1 /FL=gb:AB044548.1 gb:BC004459.1 gb:NM_004095.1 gb:L36055.1 AB044548 eukaryotic translation initiation factor 4E binding protein 1 EIF4EBP1 1978 NM_004095 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0002931 // response to ischemia // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0031333 // negative regulation of protein complex assembly // inferred from electronic annotation /// 0031929 // TOR signaling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0045947 // negative regulation of translational initiation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008190 // eukaryotic initiation factor 4E binding // inferred from electronic annotation /// 0030371 // translation repressor activity // inferred from direct assay /// 0031369 // translation initiation factor binding // inferred from electronic annotation -216.00 325.80 -7.46 0.00 0.00 -4.43
204488_at 204488_at NM_014908 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014908.1 /DEF=Homo sapiens KIAA1094 protein (KIAA1094), mRNA. /FEA=mRNA /GEN=KIAA1094 /PROD=KIAA1094 protein /DB_XREF=gi:7662481 /UG=Hs.161166 KIAA1094 protein /FL=gb:AB029017.1 gb:NM_014908.1 NM_014908 dolichol kinase DOLK 22845 NM_014908 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0006489 // dolichyl diphosphate biosynthetic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043048 // dolichyl monophosphate biosynthetic process // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay 0004168 // dolichol kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 56.18 80.04 7.45 0.00 0.00 -4.43
203102_s_at 203102_s_at NM_002408 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002408.2 /DEF=Homo sapiens mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT2), mRNA. /FEA=mRNA /GEN=MGAT2 /PROD=alpha-1,6-mannosyl-glycoproteinbeta-1,2-N-acetylglucosaminyltransferase /DB_XREF=gi:6031183 /UG=Hs.172195 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase /FL=gb:NM_002408.2 NM_002408 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase MGAT2 4247 NM_001015883 /// NM_002408 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // traceable author statement /// 0009311 // oligosaccharide metabolic process // traceable author statement /// 0009312 // oligosaccharide biosynthetic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0008455 // alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 152.77 284.76 7.45 0.00 0.00 -4.43
215947_s_at 215947_s_at AF090094 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF090094.1 /DEF=Homo sapiens clone IMAGE 172979. /FEA=mRNA /DB_XREF=gi:4063629 /UG=Hs.125078 ornithine decarboxylase antizyme 1 AF090094 family with sequence similarity 136, member A /// protein FAM136A-like FAM136A /// LOC100287852 84908 /// 100287852 NM_032822 /// XM_002342390 /// XM_003119906 /// XM_003960331 /// XM_005264620 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 86.77 138.41 7.44 0.00 0.00 -4.43
200593_s_at 200593_s_at BC003621 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003621.1 /DEF=Homo sapiens, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), clone MGC:1992, mRNA, complete cds. /FEA=mRNA /PROD=heterogeneous nuclear ribonucleoprotein U(scaffold attachment factor A) /DB_XREF=gi:13177672 /UG=Hs.103804 heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) /FL=gb:BC003367.1 gb:BC003621.1 gb:NM_004501.1 BC003621 heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) HNRNPU 3192 NM_004501 /// NM_031844 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 133.93 360.46 7.44 0.00 0.00 -4.43
203818_s_at 203818_s_at NM_006802 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006802.1 /DEF=Homo sapiens splicing factor 3a, subunit 3, 60kD (SF3A3), mRNA. /FEA=mRNA /GEN=SF3A3 /PROD=splicing factor 3a, subunit 3, 60kD /DB_XREF=gi:5803166 /UG=Hs.77897 splicing factor 3a, subunit 3, 60kD /FL=gb:BC002395.1 gb:U08815.1 gb:NM_006802.1 NM_006802 splicing factor 3a, subunit 3, 60kDa SF3A3 10946 NM_006802 /// XM_005270390 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000389 // mRNA 3'-splice site recognition // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from mutant phenotype /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 91.45 129.95 7.44 0.00 0.00 -4.43
221521_s_at 221521_s_at BC003186 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003186.1 /DEF=Homo sapiens, HSPC037 protein, clone MGC:673, mRNA, complete cds. /FEA=mRNA /PROD=HSPC037 protein /DB_XREF=gi:13112024 /UG=Hs.108196 HSPC037 protein /FL=gb:BC003186.1 gb:AF201939.1 BC003186 GINS complex subunit 2 (Psf2 homolog) GINS2 51659 NM_016095 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0005515 // protein binding // inferred from physical interaction 66.18 47.96 7.43 0.00 0.00 -4.43
218678_at 218678_at NM_024609 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024609.1 /DEF=Homo sapiens hypothetical protein FLJ21841 (FLJ21841), mRNA. /FEA=mRNA /GEN=FLJ21841 /PROD=hypothetical protein FLJ21841 /DB_XREF=gi:13375818 /UG=Hs.29076 hypothetical protein FLJ21841 /FL=gb:NM_024609.1 NM_024609 nestin NES 10763 NM_006617 0000086 // G2/M transition of mitotic cell cycle // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // non-traceable author statement /// 0007420 // brain development // inferred from sequence or structural similarity /// 0030844 // positive regulation of intermediate filament depolymerization // inferred from sequence or structural similarity /// 0031076 // embryonic camera-type eye development // inferred from sequence or structural similarity /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0048858 // cell projection morphogenesis // inferred from electronic annotation /// 0072089 // stem cell proliferation // inferred from mutant phenotype /// 2000179 // positive regulation of neural precursor cell proliferation // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005882 // intermediate filament // non-traceable author statement /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0019215 // intermediate filament binding // inferred from sequence or structural similarity 347.67 542.09 7.43 0.00 0.00 -4.43
206034_at 206034_at NM_002640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002640.1 /DEF=Homo sapiens serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8 (SERPINB8), mRNA. /FEA=mRNA /GEN=SERPINB8 /PROD=serine (or cysteine) proteinase inhibitor, cladeB (ovalbumin), member 8 /DB_XREF=gi:4505790 /UG=Hs.41726 serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8 /FL=gb:L40377.1 gb:NM_002640.1 NM_002640 serpin peptidase inhibitor, clade B (ovalbumin), member 8 SERPINB8 5271 NM_001031848 /// NM_001276490 /// NM_002640 /// NM_198833 /// XM_006722484 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0030162 // regulation of proteolysis // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -116.38 151.19 -7.42 0.00 0.00 -4.43
205446_s_at 205446_s_at NM_001880 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001880.1 /DEF=Homo sapiens activating transcription factor 2 (ATF2), mRNA. /FEA=mRNA /GEN=ATF2 /PROD=activating transcription factor 2 /DB_XREF=gi:4503032 /UG=Hs.198166 activating transcription factor 2 /FL=gb:NM_001880.1 NM_001880 activating transcription factor 2 ATF2 1386 NM_001256090 /// NM_001256091 /// NM_001256092 /// NM_001256093 /// NM_001256094 /// NM_001880 /// NR_045768 /// NR_045769 /// NR_045770 /// NR_045771 /// NR_045772 /// NR_045773 /// NR_045774 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred by curator /// 0006366 // transcription from RNA polymerase II promoter // inferred by curator /// 0006970 // response to osmotic stress // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0016573 // histone acetylation // inferred from direct assay /// 0016573 // histone acetylation // inferred from electronic annotation /// 0031573 // intra-S DNA damage checkpoint // inferred from mutant phenotype /// 0032915 // positive regulation of transforming growth factor beta2 production // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // traceable author statement /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0060612 // adipose tissue development // inferred from electronic annotation /// 1902110 // positive regulation of mitochondrial membrane permeability involved in apoptotic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0035861 // site of double-strand break // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from mutant phenotype /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001076 // RNA polymerase II transcription factor binding transcription factor activity // inferred by curator /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred by curator /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred by curator /// 0003713 // transcription coactivator activity // traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008140 // cAMP response element binding protein binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0035497 // cAMP response element binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -74.02 106.16 -7.41 0.00 0.00 -4.43
212602_at 212602_at AI806395 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI806395 /FEA=EST /DB_XREF=gi:5392961 /DB_XREF=est:wf27d05.x1 /CLONE=IMAGE:2356809 /UG=Hs.198135 KIAA0993 protein AI806395 WD repeat and FYVE domain containing 3 WDFY3 23001 NM_014991 /// NM_178583 /// NM_178585 /// XM_005262858 /// XM_006714151 /// XM_006714152 0008152 // metabolic process // inferred from electronic annotation /// 0016239 // positive regulation of macroautophagy // inferred from mutant phenotype /// 0035973 // aggrephagy // inferred from mutant phenotype 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005776 // autophagic vacuole // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016234 // inclusion body // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0019898 // extrinsic component of membrane // inferred from direct assay /// 0034274 // Atg12-Atg5-Atg16 complex // inferred from direct assay 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005545 // 1-phosphatidylinositol binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -156.78 209.71 -7.41 0.00 0.00 -4.43
210417_s_at 210417_s_at U81802 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U81802.1 /DEF=Human PtdIns 4-kinase (PI4Kb) mRNA, complete cds. /FEA=mRNA /GEN=PI4Kb /PROD=PtdIns 4-kinase /DB_XREF=gi:1894946 /UG=Hs.154846 phosphatidylinositol 4-kinase, catalytic, beta polypeptide /FL=gb:U81802.1 U81802 phosphatidylinositol 4-kinase, catalytic, beta PI4KB 5298 NM_001198773 /// NM_001198774 /// NM_001198775 /// NM_002651 /// XM_005245261 /// XM_005245262 /// XM_005245263 /// XM_005245264 /// XM_005245265 /// XM_006711385 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0048015 // phosphatidylinositol-mediated signaling // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005768 // endosome // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004430 // 1-phosphatidylinositol 4-kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 77.10 94.30 7.41 0.00 0.00 -4.43
212978_at 212978_at AU146004 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU146004 /FEA=EST /DB_XREF=gi:11007525 /DB_XREF=est:AU146004 /CLONE=HEMBA1006523 /UG=Hs.199243 KIAA0231 protein AU146004 leucine rich repeat containing 8 family, member B LRRC8B 23507 NM_001134476 /// NM_015350 /// XM_005270701 /// XM_005270702 /// XM_005270703 /// XM_005270704 /// XM_006710541 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 85.48 108.61 7.41 0.00 0.00 -4.43
212298_at 212298_at BE620457 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE620457 /FEA=EST /DB_XREF=gi:9891395 /DB_XREF=est:601483690F1 /CLONE=IMAGE:3886055 /UG=Hs.69285 neuropilin 1 /FL=gb:AF018956.1 gb:AF016050.1 gb:NM_003873.1 BE620457 neuropilin 1 NRP1 8829 NM_001024628 /// NM_001024629 /// NM_001244972 /// NM_001244973 /// NM_003873 /// NR_045259 /// XM_006717521 /// XM_006717522 /// XM_006717523 /// XM_006717524 /// XM_006717525 /// XM_006717526 0001525 // angiogenesis // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // traceable author statement /// 0002040 // sprouting angiogenesis // inferred from sequence or structural similarity /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // traceable author statement /// 0014911 // positive regulation of smooth muscle cell migration // traceable author statement /// 0016358 // dendrite development // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0021636 // trigeminal nerve morphogenesis // inferred from electronic annotation /// 0021675 // nerve development // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030517 // negative regulation of axon extension // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 0035729 // cellular response to hepatocyte growth factor stimulus // inferred from mutant phenotype /// 0035767 // endothelial cell chemotaxis // inferred from mutant phenotype /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from sequence or structural similarity /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from electronic annotation /// 0038190 // VEGF-activated neuropilin signaling pathway // inferred from sequence or structural similarity /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0048012 // hepatocyte growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048485 // sympathetic nervous system development // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048841 // regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0048846 // axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0050918 // positive chemotaxis // inferred from sequence or structural similarity /// 0060301 // positive regulation of cytokine activity // traceable author statement /// 0060385 // axonogenesis involved in innervation // inferred from sequence or structural similarity /// 0060627 // regulation of vesicle-mediated transport // traceable author statement /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // inferred from electronic annotation /// 0060978 // angiogenesis involved in coronary vascular morphogenesis // inferred from sequence or structural similarity /// 0061299 // retina vasculature morphogenesis in camera-type eye // inferred from sequence or structural similarity /// 0061549 // sympathetic ganglion development // inferred from sequence or structural similarity /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0071526 // semaphorin-plexin signaling pathway // non-traceable author statement /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 0090259 // regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 0097102 // endothelial tip cell fate specification // inferred from sequence or structural similarity /// 0097490 // sympathetic neuron projection extension // inferred from sequence or structural similarity /// 0097491 // sympathetic neuron projection guidance // inferred from sequence or structural similarity /// 1901166 // neural crest cell migration involved in autonomic nervous system development // inferred from sequence or structural similarity /// 1902285 // semaphorin-plexin signaling pathway involved in neuron projection guidance // inferred from sequence or structural similarity /// 1902336 // positive regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1902946 // protein localization to early endosome // inferred from sequence or structural similarity /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0002116 // semaphorin receptor complex // non-traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0005883 // neurofilament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043235 // receptor complex // traceable author statement /// 0097443 // sorting endosome // inferred from sequence or structural similarity 0005021 // vascular endothelial growth factor-activated receptor activity // inferred from sequence or structural similarity /// 0005021 // vascular endothelial growth factor-activated receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0015026 // coreceptor activity // traceable author statement /// 0017154 // semaphorin receptor activity // non-traceable author statement /// 0019838 // growth factor binding // inferred from physical interaction /// 0019838 // growth factor binding // traceable author statement /// 0019955 // cytokine binding // non-traceable author statement /// 0038085 // vascular endothelial growth factor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 154.98 568.51 7.40 0.00 0.00 -4.43
213405_at 213405_at N95443 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N95443 /FEA=EST /DB_XREF=gi:1267753 /DB_XREF=est:zb81c12.s1 /CLONE=IMAGE:310006 /UG=Hs.19180 Homo sapiens mRNA; cDNA DKFZp564E122 (from clone DKFZp564E122) N95443 RAB22A, member RAS oncogene family RAB22A 57403 NM_020673 /// XM_005260469 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay 65.52 72.36 7.39 0.00 0.00 -4.43
202567_at 202567_at NM_004175 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004175.1 /DEF=Homo sapiens small nuclear ribonucleoprotein D3 polypeptide (18kD) (SNRPD3), mRNA. /FEA=mRNA /GEN=SNRPD3 /PROD=small nuclear ribonucleoprotein D3 polypeptide(18kD) /DB_XREF=gi:4759159 /UG=Hs.1575 small nuclear ribonucleoprotein D3 polypeptide (18kD) /FL=gb:BC000457.1 gb:BC003150.1 gb:NM_004175.1 gb:U15009.1 NM_004175 small nuclear ribonucleoprotein D3 polypeptide 18kDa SNRPD3 6634 NM_001278656 /// NM_004175 /// NR_103819 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008334 // histone mRNA metabolic process // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005683 // U7 snRNP // inferred from direct assay /// 0005685 // U1 snRNP // inferred from direct assay /// 0005687 // U4 snRNP // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0034709 // methylosome // inferred from direct assay /// 0034715 // pICln-Sm protein complex // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0071208 // histone pre-mRNA DCP binding // inferred from sequence or structural similarity 172.50 548.88 7.37 0.00 0.00 -4.43
200684_s_at 200684_s_at AI819709 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI819709 /FEA=EST /DB_XREF=gi:5438788 /DB_XREF=est:wj77c07.x1 /CLONE=IMAGE:2408844 /UG=Hs.108104 ubiquitin-conjugating enzyme E2L 3 /FL=gb:NM_003347.1 AI819709 ubiquitin-conjugating enzyme E2L 3 UBE2L3 7332 NM_001256355 /// NM_001256356 /// NM_003347 /// NM_198157 /// NR_028436 /// NR_046082 0000209 // protein polyubiquitination // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0071383 // cellular response to steroid hormone stimulus // inferred from mutant phenotype /// 0071385 // cellular response to glucocorticoid stimulus // inferred from direct assay 0000151 // ubiquitin ligase complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 95.38 132.76 7.37 0.00 0.00 -4.43
218732_at 218732_at NM_016077 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016077.1 /DEF=Homo sapiens CGI-147 protein (LOC51651), mRNA. /FEA=mRNA /GEN=LOC51651 /PROD=CGI-147 protein /DB_XREF=gi:7706350 /UG=Hs.12677 CGI-147 protein /FL=gb:AF151905.1 gb:NM_016077.1 NM_016077 peptidyl-tRNA hydrolase 2 PTRH2 51651 NM_001015509 /// NM_016077 /// XM_005257447 0006915 // apoptotic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 2000210 // positive regulation of anoikis // inferred from mutant phenotype /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from mutant phenotype /// 0005829 // cytosol // inferred from mutant phenotype /// 0016020 // membrane // inferred from direct assay 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 98.05 162.33 7.37 0.00 0.00 -4.43
201288_at 201288_at NM_001175 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001175.1 /DEF=Homo sapiens Rho GDP dissociation inhibitor (GDI) beta (ARHGDIB), mRNA. /FEA=mRNA /GEN=ARHGDIB /PROD=Rho GDP dissociation inhibitor (GDI) beta /DB_XREF=gi:10835001 /UG=Hs.83656 Rho GDP dissociation inhibitor (GDI) beta /FL=gb:NM_001175.1 gb:L20688.1 NM_001175 Rho GDP dissociation inhibitor (GDI) beta ARHGDIB 397 NM_001175 0006928 // cellular component movement // traceable author statement /// 0006955 // immune response // traceable author statement /// 0007162 // negative regulation of cell adhesion // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0016023 // cytoplasmic membrane-bounded vesicle // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005094 // Rho GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation 306.32 1063.66 7.37 0.00 0.00 -4.43
202130_at 202130_at AA725102 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA725102 /FEA=EST /DB_XREF=gi:2742809 /DB_XREF=est:ai08h05.s1 /CLONE=1342233 /UG=Hs.209061 sudD (suppressor of bimD6, Aspergillus nidulans) homolog /FL=gb:AF013591.1 gb:NM_003831.1 AA725102 RIO kinase 3 RIOK3 8780 NM_003831 /// NM_145906 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007059 // chromosome segregation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation -333.33 457.76 -7.35 0.00 0.00 -4.43
209033_s_at 209033_s_at D86550 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D86550.1 /DEF=Human mRNA for serinethreonine protein kinase, complete cds. /FEA=mRNA /GEN=hMNB /PROD=serinethreonine protein kinase /DB_XREF=gi:1772437 /UG=Hs.75842 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A /FL=gb:D85759.1 gb:D86550.1 D86550 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A DYRK1A 1859 NM_001396 /// NM_101395 /// NM_130436 /// NM_130437 /// NM_130438 /// XM_005260931 /// XM_005260933 /// XM_006723976 /// XM_006723977 /// XM_006723978 /// XM_006723979 0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0007399 // nervous system development // traceable author statement /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // inferred from sequence or structural similarity /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0090312 // positive regulation of protein deacetylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from sequence or structural similarity /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0043621 // protein self-association // inferred from sequence or structural similarity /// 0048156 // tau protein binding // inferred from sequence or structural similarity -114.78 332.36 -7.35 0.00 0.00 -4.43
203947_at 203947_at NM_001326 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001326.1 /DEF=Homo sapiens cleavage stimulation factor, 3 pre-RNA, subunit 3, 77kD (CSTF3), mRNA. /FEA=mRNA /GEN=CSTF3 /PROD=cleavage stimulation factor subunit 3 /DB_XREF=gi:4557494 /UG=Hs.180034 cleavage stimulation factor, 3 pre-RNA, subunit 3, 77kD /FL=gb:NM_001326.1 gb:U15782.1 NM_001326 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa CSTF3 1479 NM_001033505 /// NM_001033506 /// NM_001326 /// XM_006718154 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006378 // mRNA polyadenylation // traceable author statement /// 0006379 // mRNA cleavage // traceable author statement /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -178.03 449.11 -7.35 0.00 0.00 -4.43
201204_s_at 201204_s_at AA706065 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA706065 /FEA=EST /DB_XREF=gi:2715983 /DB_XREF=est:zf44f12.s1 /CLONE=IMAGE:379823 /UG=Hs.98614 ribosome binding protein 1 (dog 180kD homolog) /FL=gb:AF006751.1 gb:NM_004587.1 AA706065 ribosome binding protein 1 RRBP1 6238 NM_001042576 /// NM_004587 0001649 // osteoblast differentiation // inferred from direct assay /// 0006412 // translation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005840 // ribosome // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 236.23 373.06 7.35 0.00 0.00 -4.43
211711_s_at 211711_s_at BC005821 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005821.1 /DEF=Homo sapiens, phosphatase and tensin homolog (mutated in multiple advanced cancers 1), clone MGC:11227, mRNA, complete cds. /FEA=mRNA /PROD=phosphatase and tensin homolog (mutated inmultiple advanced cancers 1) /DB_XREF=gi:13543309 /FL=gb:BC005821.1 BC005821 phosphatase and tensin homolog PTEN 5728 NM_000314 /// XM_006717926 /// XM_006717927 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0002902 // regulation of B cell apoptotic process // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006915 // apoptotic process // inferred from sequence or structural similarity /// 0007092 // activation of mitotic anaphase-promoting complex activity // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007270 // neuron-neuron synaptic transmission // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from sequence or structural similarity /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0007613 // memory // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010975 // regulation of neuron projection development // inferred from sequence or structural similarity /// 0014067 // negative regulation of phosphatidylinositol 3-kinase signaling // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0021542 // dentate gyrus development // inferred from sequence or structural similarity /// 0021955 // central nervous system neuron axonogenesis // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031642 // negative regulation of myelination // inferred from electronic annotation /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0031658 // negative regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0032286 // central nervous system myelin maintenance // inferred from sequence or structural similarity /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032535 // regulation of cellular component size // inferred from sequence or structural similarity /// 0033032 // regulation of myeloid cell apoptotic process // inferred from electronic annotation /// 0033198 // response to ATP // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from sequence or structural similarity /// 0035176 // social behavior // inferred from sequence or structural similarity /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0042711 // maternal behavior // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from sequence or structural similarity /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045475 // locomotor rhythm // inferred from sequence or structural similarity /// 0045792 // negative regulation of cell size // inferred from sequence or structural similarity /// 0046621 // negative regulation of organ growth // inferred from sequence or structural similarity /// 0046685 // response to arsenic-containing substance // inferred from electronic annotation /// 0046855 // inositol phosphate dephosphorylation // inferred from direct assay /// 0046856 // phosphatidylinositol dephosphorylation // inferred from direct assay /// 0046856 // phosphatidylinositol dephosphorylation // inferred from mutant phenotype /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0048853 // forebrain morphogenesis // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from sequence or structural similarity /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050765 // negative regulation of phagocytosis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from mutant phenotype /// 0051898 // negative regulation of protein kinase B signaling // inferred from mutant phenotype /// 0060024 // rhythmic synaptic transmission // inferred from sequence or structural similarity /// 0060070 // canonical Wnt signaling pathway // inferred from direct assay /// 0060074 // synapse maturation // inferred from sequence or structural similarity /// 0060134 // prepulse inhibition // inferred from sequence or structural similarity /// 0060179 // male mating behavior // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060997 // dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0061002 // negative regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0090071 // negative regulation of ribosome biogenesis // inferred from electronic annotation /// 0090344 // negative regulation of cell aging // inferred from electronic annotation /// 0090394 // negative regulation of excitatory postsynaptic membrane potential // inferred from sequence or structural similarity /// 0097105 // presynaptic membrane assembly // inferred from sequence or structural similarity /// 0097107 // postsynaptic density assembly // inferred from sequence or structural similarity /// 2000060 // positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from direct assay /// 2000463 // positive regulation of excitatory postsynaptic membrane potential // inferred from sequence or structural similarity /// 2000808 // negative regulation of synaptic vesicle clustering // inferred from sequence or structural similarity /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0035749 // myelin sheath adaxonal region // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from direct assay /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from sequence or structural similarity /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004438 // phosphatidylinositol-3-phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0010997 // anaphase-promoting complex binding // inferred from physical interaction /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // inferred from direct assay /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0051717 // inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity // inferred from direct assay /// 0051717 // inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity // traceable author statement /// 0051800 // phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity // inferred from direct assay /// 0051800 // phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity // traceable author statement -84.33 93.89 -7.34 0.00 0.00 -4.43
201906_s_at 201906_s_at NM_005808 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005808.1 /DEF=Homo sapiens HYA22 protein (HYA22), mRNA. /FEA=mRNA /GEN=HYA22 /PROD=HYA22 protein /DB_XREF=gi:5031774 /UG=Hs.147189 HYA22 protein /FL=gb:D88153.1 gb:NM_005808.1 NM_005808 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like CTDSPL 10217 NM_001008392 /// NM_005808 /// XM_006712922 /// XM_006712923 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 72.98 76.26 7.34 0.00 0.00 -4.43
201700_at 201700_at NM_001760 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001760.1 /DEF=Homo sapiens cyclin D3 (CCND3), mRNA. /FEA=mRNA /GEN=CCND3 /PROD=cyclin D3 /DB_XREF=gi:4502618 /UG=Hs.83173 cyclin D3 /FL=gb:M90814.1 gb:M92287.1 gb:NM_001760.1 NM_001760 cyclin D3 CCND3 896 NM_001136017 /// NM_001136125 /// NM_001136126 /// NM_001287427 /// NM_001287434 /// NM_001760 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction 138.20 236.65 7.33 0.00 0.00 -4.43
201313_at 201313_at NM_001975 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001975.1 /DEF=Homo sapiens enolase 2, (gamma, neuronal) (ENO2), mRNA. /FEA=mRNA /GEN=ENO2 /PROD=enolase 2, (gamma, neuronal) /DB_XREF=gi:5803010 /UG=Hs.146580 enolase 2, (gamma, neuronal) /FL=gb:BC002745.1 gb:NM_001975.1 gb:M22349.1 NM_001975 enolase 2 (gamma, neuronal) ENO2 2026 NM_001975 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000015 // phosphopyruvate hydratase complex // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004634 // phosphopyruvate hydratase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -78.10 56.77 -7.33 0.00 0.00 -4.43
200788_s_at 200788_s_at NM_003768 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003768.1 /DEF=Homo sapiens phosphoprotein enriched in astrocytes 15 (PEA15), mRNA. /FEA=mRNA /GEN=PEA15 /PROD=phosphoprotein enriched in astrocytes 15 /DB_XREF=gi:4505704 /UG=Hs.194673 phosphoprotein enriched in astrocytes 15 /FL=gb:BC002426.1 gb:NM_003768.1 NM_003768 phosphoprotein enriched in astrocytes 15 PEA15 8682 NM_003768 /// XM_005245564 /// XM_006711598 /// XM_006711599 0006810 // transport // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0046325 // negative regulation of glucose import // inferred from direct assay /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005875 // microtubule associated complex // non-traceable author statement 0005515 // protein binding // inferred from physical interaction 176.25 888.05 7.33 0.00 0.00 -4.43
200924_s_at 200924_s_at NM_002394 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002394.1 /DEF=Homo sapiens solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 (SLC3A2), mRNA. /FEA=mRNA /GEN=SLC3A2 /PROD=antigen identified by monoclonal antibodies 4F2,TRA1.10, TROP4, and T43 /DB_XREF=gi:4505140 /UG=Hs.79748 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 /FL=gb:BC001061.1 gb:J02769.1 gb:J03569.1 gb:NM_002394.1 gb:AB018010.1 NM_002394 solute carrier family 3 (amino acid transporter heavy chain), member 2 SLC3A2 6520 NM_001012661 /// NM_001012662 /// NM_001012663 /// NM_001012664 /// NM_001013251 /// NM_002394 /// NR_037193 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006816 // calcium ion transport // non-traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0015804 // neutral amino acid transport // inferred from electronic annotation /// 0015827 // tryptophan transport // inferred from sequence or structural similarity /// 0016049 // cell growth // non-traceable author statement /// 0035725 // sodium ion transmembrane transport // traceable author statement /// 0043330 // response to exogenous dsRNA // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060356 // leucine import // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005432 // calcium:sodium antiporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0043169 // cation binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -192.98 294.24 -7.33 0.00 0.00 -4.43
222199_s_at 222199_s_at AK001289 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001289.1 /DEF=Homo sapiens cDNA FLJ10427 fis, clone NT2RP1000348, weakly similar to REDUCED VIABILITY UPON STARVATION PROTEIN 161. /FEA=mRNA /DB_XREF=gi:7022450 /UG=Hs.68090 bridging integrator-3 AK001289 bridging integrator 3 BIN3 55909 NM_018688 /// XM_005273573 0000910 // cytokinesis // non-traceable author statement /// 0000917 // barrier septum assembly // inferred from electronic annotation /// 0007015 // actin filament organization // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0008104 // protein localization // inferred from mutant phenotype /// 0009826 // unidimensional cell growth // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008093 // cytoskeletal adaptor activity // non-traceable author statement 66.33 65.26 7.31 0.00 0.00 -4.43
207782_s_at 207782_s_at NM_007319 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007319.1 /DEF=Homo sapiens presenilin 1 (Alzheimer disease 3) (PSEN1), transcript variant I-374., mRNA. /FEA=mRNA /GEN=PSEN1 /PROD=presenilin 1 isoform I-374 /DB_XREF=gi:7549814 /UG=Hs.3260 presenilin 1 (Alzheimer disease 3) /FL=gb:U40380.1 gb:NM_007319.1 NM_007319 presenilin 1 PSEN1 5663 NM_000021 /// NM_007318 /// NM_007319 /// XM_005267864 /// XM_005267866 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0002244 // hematopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002286 // T cell activation involved in immune response // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007175 // negative regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007220 // Notch receptor processing // not recorded /// 0007220 // Notch receptor processing // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007611 // learning or memory // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0015871 // choline transport // inferred from electronic annotation /// 0016080 // synaptic vesicle targeting // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from mutant phenotype /// 0016485 // protein processing // inferred from direct assay /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021870 // Cajal-Retzius cell differentiation // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from direct assay /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from genetic interaction /// 0034205 // beta-amyloid formation // inferred from electronic annotation /// 0035282 // segmentation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0040011 // locomotion // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // inferred from direct assay /// 0042640 // anagen // inferred from electronic annotation /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0042987 // amyloid precursor protein catabolic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048538 // thymus development // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0050435 // beta-amyloid metabolic process // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from electronic annotation /// 0050820 // positive regulation of coagulation // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0051444 // negative regulation of ubiquitin-protein transferase activity // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // not recorded /// 0051604 // protein maturation // inferred from electronic annotation /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // /// 0060075 // regulation of resting membrane potential // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // inferred from mutant phenotype /// 2000059 // negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005765 // lysosomal membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005790 // smooth endoplasmic reticulum // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005938 // cell cortex // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // traceable author statement /// 0016324 // apical plasma membrane // not recorded /// 0030018 // Z disc // not recorded /// 0030424 // axon // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0031965 // nuclear membrane // inferred from direct assay /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // not recorded /// 0043227 // membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070765 // gamma-secretase complex // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0045296 // cadherin binding // not recorded -125.85 179.40 -7.31 0.00 0.00 -4.43
209486_at 209486_at BC004546 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004546.1 /DEF=Homo sapiens, disrupter of silencing 10, clone MGC:11290, mRNA, complete cds. /FEA=mRNA /PROD=disrupter of silencing 10 /DB_XREF=gi:13528698 /UG=Hs.322901 disrupter of silencing 10 /FL=gb:AL136590.1 gb:BC004546.1 gb:AF271212.1 gb:NM_020368.1 BC004546 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) UTP3 57050 NM_020368 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 77.85 102.08 7.31 0.00 0.00 -4.43
212751_at 212751_at BG290646 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG290646 /FEA=EST /DB_XREF=gi:13047817 /DB_XREF=est:602388931F1 /CLONE=IMAGE:4517935 /UG=Hs.75355 ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) BG290646 ubiquitin-conjugating enzyme E2N UBE2N 7334 NM_003348 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0000729 // DNA double-strand break processing // inferred from mutant phenotype /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006282 // regulation of DNA repair // traceable author statement /// 0006301 // postreplication repair // inferred from mutant phenotype /// 0006464 // cellular protein modification process // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0016567 // protein ubiquitination // traceable author statement /// 0016574 // histone ubiquitination // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031058 // positive regulation of histone modification // inferred from mutant phenotype /// 0033182 // regulation of histone ubiquitination // inferred from mutant phenotype /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045739 // positive regulation of DNA repair // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051443 // positive regulation of ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0031372 // UBC13-MMS2 complex // inferred from direct assay /// 0035370 // UBC13-UEV1A complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 89.80 196.93 7.31 0.00 0.00 -4.43
217781_s_at 217781_s_at NM_022473 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022473.1 /DEF=Homo sapiens zinc finger protein 106 (ZFP106), mRNA. /FEA=mRNA /GEN=ZFP106 /PROD=zinc finger protein 106 /DB_XREF=gi:11968022 /UG=Hs.15220 zinc finger protein 106 /FL=gb:AF205632.1 gb:NM_022473.1 NM_022473 zinc finger protein 106 ZNF106 64397 NM_001284306 /// NM_001284307 /// NM_022473 /// XM_005254591 /// XM_005254592 0008286 // insulin receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0001515 // opioid peptide activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 119.78 153.61 7.30 0.00 0.00 -4.43
218178_s_at 218178_s_at NM_020412 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020412.1 /DEF=Homo sapiens CHMP1.5 protein (CHMP1.5), mRNA. /FEA=mRNA /GEN=CHMP1.5 /PROD=CHMP1.5 protein /DB_XREF=gi:9966900 /UG=Hs.42733 CHMP1.5 protein /FL=gb:AF281064.1 gb:NM_020412.1 NM_020412 charged multivesicular body protein 1B CHMP1B 57132 NM_020412 0000910 // cytokinesis // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045184 // establishment of protein localization // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction -99.08 258.46 -7.29 0.00 0.00 -4.43
221699_s_at 221699_s_at AF334103 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF334103.1 /DEF=Homo sapiens nucleolar protein GU2 mRNA, complete cds. /FEA=mRNA /PROD=nucleolar protein GU2 /DB_XREF=gi:13540303 /FL=gb:AF334103.1 AF334103 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 DDX50 79009 NM_024045 /// XM_005270148 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -96.95 257.65 -7.29 0.00 0.00 -4.43
211977_at 211977_at AK024651 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024651.1 /DEF=Homo sapiens cDNA: FLJ20998 fis, clone CAE03125. /FEA=mRNA /DB_XREF=gi:10436978 /UG=Hs.6639 KIAA1624 protein AK024651 G protein-coupled receptor 107 GPR107 57720 NM_001136557 /// NM_001136558 /// NM_001287346 /// NM_020960 /// XM_006717196 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0019236 // response to pheromone // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -69.05 116.80 -7.29 0.00 0.00 -4.43
201619_at 201619_at NM_006793 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006793.1 /DEF=Homo sapiens peroxiredoxin 3 (PRDX3), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=PRDX3 /PROD=peroxiredoxin 3 /DB_XREF=gi:5802973 /UG=Hs.75454 peroxiredoxin 3 /FL=gb:BC002685.1 gb:NM_006793.1 gb:D49396.1 NM_006793 peroxiredoxin 3 PRDX3 10935 NM_006793 /// NM_014098 0001893 // maternal placenta development // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0018171 // peptidyl-cysteine oxidation // inferred from direct assay /// 0030099 // myeloid cell differentiation // inferred from sequence or structural similarity /// 0032496 // response to lipopolysaccharide // inferred from sequence or structural similarity /// 0033673 // negative regulation of kinase activity // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from direct assay /// 0034614 // cellular response to reactive oxygen species // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0042744 // hydrogen peroxide catabolic process // inferred from genetic interaction /// 0042744 // hydrogen peroxide catabolic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051881 // regulation of mitochondrial membrane potential // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0008385 // IkappaB kinase complex // inferred from physical interaction /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004601 // peroxidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008379 // thioredoxin peroxidase activity // inferred from direct assay /// 0008785 // alkyl hydroperoxide reductase activity // non-traceable author statement /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from mutant phenotype /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 159.98 488.34 7.28 0.00 0.00 -4.43
208990_s_at 208990_s_at AF132362 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF132362.1 /DEF=Homo sapiens hnRNP 2H9B mRNA, complete cds. /FEA=mRNA /PROD=hnRNP 2H9B /DB_XREF=gi:7739444 /UG=Hs.279681 heterogeneous nuclear ribonucleoprotein H3 (2H9) /FL=gb:AF132362.1 AF132362 heterogeneous nuclear ribonucleoprotein H3 (2H9) HNRNPH3 3189 NM_012207 /// NM_021644 /// XM_005269748 /// XM_005269749 /// XM_005269751 /// XM_005269752 /// XM_005269753 /// XM_005269754 /// XM_006717816 /// XM_006717817 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 93.90 248.95 7.28 0.00 0.00 -4.43
213052_at 213052_at BF246917 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF246917 /FEA=EST /DB_XREF=gi:11161763 /DB_XREF=est:601854275F1 /CLONE=IMAGE:4074234 /UG=Hs.289075 protein kinase, cAMP-dependent, regulatory, type II, alpha BF246917 protein kinase, cAMP-dependent, regulatory, type II, alpha PRKAR2A 5576 NM_004157 /// XM_005265313 /// XM_005265314 /// XM_005265315 /// XR_427280 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 2000480 // negative regulation of cAMP-dependent protein kinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // non-traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction 96.25 323.62 7.27 0.00 0.00 -4.43
212125_at 212125_at NM_002883 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_002883.1 /DEF=Homo sapiens Ran GTPase activating protein 1 (RANGAP1), mRNA. /FEA=CDS /GEN=RANGAP1 /PROD=Ran GTPase activating protein 1 /DB_XREF=gi:4506410 /UG=Hs.183800 Ran GTPase activating protein 1 /FL=gb:NM_002883.1 NM_002883 Ran GTPase activating protein 1 RANGAP1 5905 NM_001278651 /// NM_002883 /// XM_005261695 /// XM_005261696 /// XM_006724289 0000278 // mitotic cell cycle // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0032853 // positive regulation of Ran GTPase activity // inferred from electronic annotation /// 0032853 // positive regulation of Ran GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0046826 // negative regulation of protein export from nucleus // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005098 // Ran GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -186.48 283.21 -7.27 0.00 0.00 -4.43
210284_s_at 210284_s_at AF241230 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF241230.1 /DEF=Homo sapiens TAK1-binding protein 2 mRNA, complete cds. /FEA=mRNA /PROD=TAK1-binding protein 2 /DB_XREF=gi:7677465 /UG=Hs.109727 TAK1-binding protein 2; KIAA0733 protein /FL=gb:AF241230.1 AF241230 TGF-beta activated kinase 1/MAP3K7 binding protein 2 TAB2 23118 NM_001292034 /// NM_001292035 /// NM_015093 /// NM_145342 /// XM_006715403 0000187 // activation of MAPK activity // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007254 // JNK cascade // traceable author statement /// 0007507 // heart development // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0045087 // innate immune response // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070530 // K63-linked polyubiquitin binding // inferred from direct assay -156.45 216.72 -7.26 0.00 0.00 -4.43
201421_s_at 201421_s_at NM_024102 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024102.1 /DEF=Homo sapiens hypothetical protein MGC2722 (MGC2722), mRNA. /FEA=mRNA /GEN=MGC2722 /PROD=hypothetical protein MGC2722 /DB_XREF=gi:13129109 /UG=Hs.11039 hypothetical protein MGC2722 /FL=gb:BC001679.1 gb:NM_024102.1 NM_024102 WD repeat domain 77 WDR77 79084 NM_024102 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from genetic interaction /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from genetic interaction /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0034709 // methylosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from genetic interaction 77.90 98.05 7.26 0.00 0.00 -4.43
200862_at 200862_at NM_014762 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014762.1 /DEF=Homo sapiens seladin-1 (KIAA0018), mRNA. /FEA=mRNA /GEN=KIAA0018 /PROD=seladin-1 /DB_XREF=gi:13375617 /UG=Hs.75616 seladin-1 /FL=gb:AF261758.1 gb:BC004375.1 gb:NM_014762.1 NM_014762 24-dehydrocholesterol reductase DHCR24 1718 NM_014762 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // inferred from sequence or structural similarity /// 0006695 // cholesterol biosynthetic process // non-traceable author statement /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006915 // apoptotic process // non-traceable author statement /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007050 // cell cycle arrest // non-traceable author statement /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0009888 // tissue development // inferred from mutant phenotype /// 0016125 // sterol metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030539 // male genitalia development // inferred from electronic annotation /// 0031639 // plasminogen activation // inferred from electronic annotation /// 0042987 // amyloid precursor protein catabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043588 // skin development // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 1901214 // regulation of neuron death // non-traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // non-traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008762 // UDP-N-acetylmuramate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016614 // oxidoreductase activity, acting on CH-OH group of donors // inferred from electronic annotation /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0042605 // peptide antigen binding // inferred from physical interaction /// 0050614 // delta24-sterol reductase activity // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation 190.65 143.43 7.26 0.00 0.00 -4.43
213070_at 213070_at AV682436 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV682436 /FEA=EST /DB_XREF=gi:10284299 /DB_XREF=est:AV682436 /CLONE=GKBABE08 /UG=Hs.5848 Homo sapiens mRNA; cDNA DKFZp564L222 (from clone DKFZp564L222) AV682436 phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha PIK3C2A 5286 NM_002645 /// XM_005252977 /// XM_005252978 /// XM_005252979 /// XM_005252980 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006887 // exocytosis // traceable author statement /// 0006897 // endocytosis // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0014829 // vascular smooth muscle contraction // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0036092 // phosphatidylinositol-3-phosphate biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // inferred from electronic annotation /// 0048268 // clathrin coat assembly // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005942 // phosphatidylinositol 3-kinase complex // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035004 // phosphatidylinositol 3-kinase activity // traceable author statement /// 0035005 // 1-phosphatidylinositol-4-phosphate 3-kinase activity // traceable author statement /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation 126.90 305.75 7.25 0.00 0.00 -4.43
213005_s_at 213005_s_at D79994 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D79994.1 /DEF=Human mRNA for KIAA0172 gene, partial cds. /FEA=mRNA /GEN=KIAA0172 /DB_XREF=gi:1136403 /UG=Hs.77546 KIAA0172 protein D79994 KN motif and ankyrin repeat domains 1 KANK1 23189 NM_001256876 /// NM_001256877 /// NM_015158 /// NM_153186 /// XM_005251410 /// XM_005251411 /// XM_005251413 /// XM_005251414 /// XM_005251415 /// XM_005251416 /// XM_005251417 /// XM_005251418 /// XM_005251419 /// XM_006716743 /// XM_006716744 /// XM_006716745 /// XM_006716746 /// XM_006716747 /// XM_006716748 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from direct assay /// 0030177 // positive regulation of Wnt signaling pathway // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030837 // negative regulation of actin filament polymerization // inferred from direct assay /// 0035024 // negative regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035413 // positive regulation of catenin import into nucleus // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0090303 // positive regulation of wound healing // inferred from mutant phenotype /// 1900025 // negative regulation of substrate adhesion-dependent cell spreading // inferred from direct assay /// 1900028 // negative regulation of ruffle assembly // inferred from direct assay /// 2000114 // regulation of establishment of cell polarity // inferred from mutant phenotype /// 2000393 // negative regulation of lamellipodium morphogenesis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from direct assay -182.90 367.20 -7.25 0.00 0.00 -4.43
213064_at 213064_at N64802 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N64802 /FEA=EST /DB_XREF=gi:1212631 /DB_XREF=est:yz31b05.s1 /CLONE=IMAGE:284625 /UG=Hs.173684 Homo sapiens mRNA; cDNA DKFZp762G207 (from clone DKFZp762G207) N64802 zinc finger CCCH-type containing 14 ZC3H14 79882 NM_001160103 /// NM_001160104 /// NM_024824 /// NM_207660 /// NM_207661 /// NM_207662 /// XM_005268067 /// XM_005268068 /// XM_005268069 /// XM_005268070 /// XM_005268071 /// XM_005268073 /// XM_006720257 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 72.57 110.61 7.24 0.00 0.00 -4.43
210732_s_at 210732_s_at AF342816 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF342816.1 /DEF=Homo sapiens colorectal carcinoma-derived galectin-8 variant II mRNA, complete cds. /FEA=mRNA /PROD=colorectal carcinoma-derived galectin-8 variantII /DB_XREF=gi:13249300 /UG=Hs.4082 lectin, galactoside-binding, soluble, 8 (galectin 8) /FL=gb:AF342816.1 gb:AF074001.1 AF342816 lectin, galactoside-binding, soluble, 8 LGALS8 3964 NM_006499 /// NM_201543 /// NM_201544 /// NM_201545 0002317 // plasma cell differentiation // inferred from electronic annotation /// 0031295 // T cell costimulation // inferred from electronic annotation 0005615 // extracellular space // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation -78.75 89.72 -7.24 0.00 0.00 -4.43
211932_at 211932_at BF195526 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF195526 /FEA=EST /DB_XREF=gi:11082509 /DB_XREF=est:7n89c08.x1 /CLONE=IMAGE:3571599 /UG=Hs.249247 heterogeneous nuclear protein similar to rat helix destabilizing protein BF195526 heterogeneous nuclear ribonucleoprotein A3 HNRNPA3 220988 NM_194247 /// XM_005246380 /// XM_005246381 /// XM_005246382 /// XM_006712365 /// XR_427076 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 100.77 286.46 7.24 0.00 0.00 -4.43
200779_at 200779_at NM_001675 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001675.1 /DEF=Homo sapiens activating transcription factor 4 (tax-responsive enhancer element B67) (ATF4), mRNA. /FEA=mRNA /GEN=ATF4 /PROD=activating transcription factor 4 /DB_XREF=gi:4502264 /UG=Hs.181243 activating transcription factor 4 (tax-responsive enhancer element B67) /FL=gb:M86842.1 gb:NM_001675.1 NM_001675 activating transcription factor 4 ATF4 468 NM_001675 /// NM_182810 0006094 // gluconeogenesis // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0043267 // negative regulation of potassium ion transport // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from sequence or structural similarity /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from electronic annotation 0001046 // core promoter sequence-specific DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -339.10 888.67 -7.24 0.00 0.00 -4.43
218357_s_at 218357_s_at NM_012459 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012459.1 /DEF=Homo sapiens translocase of inner mitochondrial membrane 8 (yeast) homolog B (TIMM8B), mRNA. /FEA=mRNA /GEN=TIMM8B /PROD=translocase of inner mitochondrial membrane 8(yeast) homolog B /DB_XREF=gi:6912711 /UG=Hs.279915 translocase of inner mitochondrial membrane 8 (yeast) homolog B /FL=gb:AF150087.1 gb:AF152350.1 gb:NM_012459.1 NM_012459 translocase of inner mitochondrial membrane 8 homolog B (yeast) TIMM8B 26521 NM_012459 /// NR_028383 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0072321 // chaperone-mediated protein transport // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // traceable author statement 0008270 // zinc ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 216.98 577.86 7.23 0.00 0.00 -4.43
213184_at 213184_at N48361 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N48361 /FEA=EST /DB_XREF=gi:1189527 /DB_XREF=est:yy79g10.s1 /CLONE=IMAGE:279810 /UG=Hs.15787 Homo sapiens mRNA; cDNA DKFZp564O1016 (from clone DKFZp564O1016) N48361 SUMO1/sentrin specific peptidase 5 SENP5 205564 NM_152699 /// XM_005269310 /// XM_005269311 /// XM_005269312 0006508 // proteolysis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016925 // protein sumoylation // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 72.70 72.92 7.22 0.00 0.00 -4.43
208101_s_at 208101_s_at NM_030914 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030914.1 /DEF=Homo sapiens hypothetical protein MGC2668 (MGC2668), mRNA. /FEA=mRNA /GEN=MGC2668 /PROD=hypothetical protein MGC2668 /DB_XREF=gi:13569869 /FL=gb:NM_030914.1 NM_030914 ubiquitin related modifier 1 URM1 81605 NM_001135947 /// NM_001265582 /// NM_030914 /// NR_049743 0002098 // tRNA wobble uridine modification // inferred from mutant phenotype /// 0008033 // tRNA processing // inferred from electronic annotation /// 0032447 // protein urmylation // inferred from electronic annotation /// 0034227 // tRNA thio-modification // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred by curator /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016783 // sulfurtransferase activity // inferred from direct assay 72.33 135.79 7.22 0.00 0.00 -4.43
213086_s_at 213086_s_at BF341845 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF341845 /FEA=EST /DB_XREF=gi:11288369 /DB_XREF=est:602016378F1 /CLONE=IMAGE:4151970 /UG=Hs.84264 acidic protein rich in leucines BF341845 casein kinase 1, alpha 1 CSNK1A1 1452 NM_001025105 /// NM_001271741 /// NM_001271742 /// NM_001892 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -213.22 571.06 -7.21 0.00 0.00 -4.43
204243_at 204243_at NM_012421 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012421.1 /DEF=Homo sapiens rearranged L-myc fusion sequence (RLF), mRNA. /FEA=mRNA /GEN=RLF /PROD=rearranged L-myc fusion sequence /DB_XREF=gi:6912631 /UG=Hs.13321 rearranged L-myc fusion sequence /FL=gb:U22377.1 gb:NM_012421.1 NM_012421 rearranged L-myc fusion RLF 6018 NM_012421 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0009294 // DNA mediated transformation // non-traceable author statement /// 0015074 // DNA integration // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0051276 // chromosome organization // inferred from direct assay /// 0051276 // chromosome organization // non-traceable author statement 0005634 // nucleus // inferred by curator 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -141.37 166.79 -7.20 0.00 0.00 -4.43
201051_at 201051_at BE560202 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE560202 /FEA=EST /DB_XREF=gi:9803834 /DB_XREF=est:601347428F1 /CLONE=IMAGE:3688350 /UG=Hs.285013 putative human HLA class II associated protein I /FL=gb:U60823.1 gb:U73477.1 gb:AF025684.1 gb:NM_006305.1 BE560202 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A ANP32A 8125 NM_006305 /// XM_006720707 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 123.52 399.94 7.19 0.00 0.00 -4.43
201592_at 201592_at NM_003756 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003756.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 3 (gamma, 40kD) (EIF3S3), mRNA. /FEA=mRNA /GEN=EIF3S3 /PROD=eukaryotic translation initiation factor 3,subunit 3 (gamma, 40kD) /DB_XREF=gi:4503514 /UG=Hs.58189 eukaryotic translation initiation factor 3, subunit 3 (gamma, 40kD) /FL=gb:BC000386.1 gb:U54559.1 gb:NM_003756.1 NM_003756 eukaryotic translation initiation factor 3, subunit H EIF3H 8667 NM_003756 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -213.58 835.64 -7.18 0.00 0.00 -4.43
202720_at 202720_at NM_015641 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015641.1 /DEF=Homo sapiens testin (DKFZP586B2022), mRNA. /FEA=mRNA /GEN=DKFZP586B2022 /PROD=testin /DB_XREF=gi:7661665 /UG=Hs.165986 testin /FL=gb:AF245356.1 gb:AF245357.1 gb:BC001451.1 gb:NM_015641.1 NM_015641 testis derived transcript (3 LIM domains) TES 26136 NM_015641 /// NM_152829 /// XM_005250258 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0008270 // zinc ion binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -287.03 268.49 -7.18 0.00 0.00 -4.43
215933_s_at 215933_s_at Z21533 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z21533.1 /DEF=H.sapiens HEX gene encoding homeobox related protein. /FEA=mRNA /GEN=HEX /PROD=homeobox related protein /DB_XREF=gi:32068 /UG=Hs.118651 hematopoietically expressed homeobox Z21533 hematopoietically expressed homeobox HHEX 3087 NM_002729 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0007049 // cell cycle // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0009611 // response to wounding // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from sequence or structural similarity /// 0010621 // negative regulation of transcription by transcription factor localization // inferred by curator /// 0010944 // negative regulation of transcription by competitive promoter binding // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from sequence or structural similarity /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from mutant phenotype /// 0022027 // interkinetic nuclear migration // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred by curator /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0031016 // pancreas development // inferred from electronic annotation /// 0034504 // protein localization to nucleus // inferred from direct assay /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048729 // tissue morphogenesis // inferred from electronic annotation /// 0048853 // forebrain morphogenesis // inferred from electronic annotation /// 0060431 // primary lung bud formation // inferred from electronic annotation /// 0061009 // common bile duct development // inferred from electronic annotation /// 0061010 // gall bladder development // inferred from electronic annotation /// 0061011 // hepatic duct development // inferred from electronic annotation /// 0061017 // hepatoblast differentiation // inferred from electronic annotation /// 0070365 // hepatocyte differentiation // inferred from electronic annotation /// 0071103 // DNA conformation change // inferred from direct assay /// 0090009 // primitive streak formation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0032993 // protein-DNA complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008190 // eukaryotic initiation factor 4E binding // inferred from direct assay /// 0008301 // DNA binding, bending // inferred from direct assay /// 0017025 // TBP-class protein binding // traceable author statement /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // traceable author statement /// 0070491 // repressing transcription factor binding // inferred from direct assay /// 0071837 // HMG box domain binding // inferred from electronic annotation -178.07 478.66 -7.17 0.00 0.00 -4.43
204060_s_at 204060_s_at NM_005044 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005044.1 /DEF=Homo sapiens protein kinase, X-linked (PRKX), mRNA. /FEA=mRNA /GEN=PRKX /PROD=protein kinase, X-linked /DB_XREF=gi:4826947 /UG=Hs.147996 protein kinase, X-linked /FL=gb:NM_005044.1 NM_005044 protein kinase, X-linked /// protein kinase, Y-linked, pseudogene PRKX /// PRKY 5613 /// 5616 NM_002760 /// NM_005044 /// NR_028062 /// XM_005274560 /// XM_005274561 0001525 // angiogenesis // inferred from mutant phenotype /// 0001935 // endothelial cell proliferation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030099 // myeloid cell differentiation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from direct assay /// 0030334 // regulation of cell migration // inferred from direct assay /// 0031589 // cell-substrate adhesion // inferred from mutant phenotype /// 0043542 // endothelial cell migration // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0060562 // epithelial tube morphogenesis // inferred from direct assay /// 0060993 // kidney morphogenesis // inferred from direct assay /// 2000696 // regulation of epithelial cell differentiation involved in kidney development // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004691 // cAMP-dependent protein kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 88.03 113.06 7.17 0.00 0.00 -4.43
208671_at 208671_at AF164794 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF164794.1 /DEF=Homo sapiens Diff33 protein homolog mRNA, complete cds. /FEA=mRNA /PROD=Diff33 protein homolog /DB_XREF=gi:8895090 /UG=Hs.146668 KIAA1253 protein /FL=gb:AF164794.1 AF164794 serine incorporator 1 SERINC1 57515 NM_020755 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006658 // phosphatidylserine metabolic process // inferred from sequence or structural similarity /// 0006665 // sphingolipid metabolic process // inferred from sequence or structural similarity /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0015825 // L-serine transport // inferred from sequence or structural similarity /// 0051347 // positive regulation of transferase activity // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015194 // L-serine transmembrane transporter activity // inferred from sequence or structural similarity -179.80 378.15 -7.17 0.00 0.00 -4.43
210999_s_at 210999_s_at U66065 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U66065.1 /DEF=Human Grb10- and Grb-IR-related splice variant 1 mRNA, complete cds. /FEA=mRNA /PROD=Grb10- and Grb-IR-related splice variant 1 /DB_XREF=gi:1518100 /UG=Hs.81875 growth factor receptor-bound protein 10 /FL=gb:U66065.1 gb:U69276.1 gb:NM_005311.1 U66065 growth factor receptor-bound protein 10 GRB10 2887 NM_001001549 /// NM_001001550 /// NM_001001555 /// NM_005311 /// XM_005271760 /// XM_005271761 /// XM_005271765 /// XM_005271766 /// XM_005271767 /// XM_006715703 /// XM_006715704 /// XM_006715705 0007165 // signal transduction // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from direct assay /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0032868 // response to insulin // inferred from sequence or structural similarity /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from sequence or structural similarity /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from sequence or structural similarity /// 0046325 // negative regulation of glucose import // inferred from sequence or structural similarity /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation -174.70 290.25 -7.16 0.00 0.00 -4.43
221423_s_at 221423_s_at NM_030799 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030799.1 /DEF=Homo sapiens hypothetical protein AF140225 (AF140225), mRNA. /FEA=CDS /GEN=AF140225 /PROD=hypothetical protein AF140225 /DB_XREF=gi:13540583 /FL=gb:NM_030799.1 NM_030799 Yip1 domain family, member 5 YIPF5 81555 NM_001024947 /// NM_001271732 /// NM_030799 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0060628 // regulation of ER to Golgi vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030134 // ER to Golgi transport vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0042175 // nuclear outer membrane-endoplasmic reticulum membrane network // inferred from electronic annotation /// 0070971 // endoplasmic reticulum exit site // inferred from electronic annotation -203.62 317.64 -7.16 0.00 0.00 -4.43
205409_at 205409_at NM_005253 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005253.1 /DEF=Homo sapiens FOS-like antigen 2 (FOSL2), mRNA. /FEA=mRNA /GEN=FOSL2 /PROD=FOS-like antigen 2 /DB_XREF=gi:4885244 /UG=Hs.301612 FOS-like antigen 2 /FL=gb:NM_005253.1 NM_005253 FOS-like antigen 2 FOSL2 2355 NM_005253 /// XM_005264231 /// XM_006711976 /// XM_006711977 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008219 // cell death // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -72.80 55.35 -7.15 0.00 0.00 -4.43
211023_at 211023_at AL117618 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL117618.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564K0164 (from clone DKFZp564K0164); complete cds. /FEA=mRNA /GEN=DKFZp564K0164 /PROD=hypothetical protein /DB_XREF=gi:5912196 /UG=Hs.979 pyruvate dehydrogenase (lipoamide) beta /FL=gb:AL117618.1 AL117618 pyruvate dehydrogenase (lipoamide) beta PDHB 5162 NM_000925 /// NM_001173468 /// NR_033384 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006086 // acetyl-CoA biosynthetic process from pyruvate // inferred from direct assay /// 0006090 // pyruvate metabolic process // traceable author statement /// 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004738 // pyruvate dehydrogenase activity // inferred from direct assay /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation 198.18 300.44 7.15 0.00 0.00 -4.43
200887_s_at 200887_s_at NM_007315 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007315.1 /DEF=Homo sapiens signal transducer and activator of transcription 1, 91kD (STAT1), mRNA. /FEA=mRNA /GEN=STAT1 /PROD=signal transducer and activator of transcription1, 91kD /DB_XREF=gi:6274551 /UG=Hs.21486 signal transducer and activator of transcription 1, 91kD /FL=gb:M97935.1 gb:NM_007315.1 NM_007315 signal transducer and activator of transcription 1, 91kDa STAT1 6772 NM_007315 /// NM_139266 /// XM_006712718 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0003340 // negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006915 // apoptotic process // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from direct assay /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008015 // blood circulation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from direct assay /// 0034097 // response to cytokine // inferred from sequence or structural similarity /// 0034240 // negative regulation of macrophage fusion // inferred from electronic annotation /// 0035458 // cellular response to interferon-beta // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from sequence or structural similarity /// 0043542 // endothelial cell migration // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from sequence or structural similarity /// 0051591 // response to cAMP // inferred from sequence or structural similarity /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // inferred from direct assay /// 0060333 // interferon-gamma-mediated signaling pathway // inferred from sequence or structural similarity /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // inferred from sequence or structural similarity /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060338 // regulation of type I interferon-mediated signaling pathway // traceable author statement /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // traceable author statement /// 0061326 // renal tubule development // inferred from mutant phenotype /// 0072136 // metanephric mesenchymal cell proliferation involved in metanephros development // inferred from sequence or structural similarity /// 0072162 // metanephric mesenchymal cell differentiation // inferred from sequence or structural similarity /// 0072308 // negative regulation of metanephric nephron tubule epithelial cell differentiation // inferred from sequence or structural similarity 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030424 // axon // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000983 // RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0031730 // CCR5 chemokine receptor binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 173.00 219.22 7.15 0.00 0.00 -4.43
210869_s_at 210869_s_at M29277 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M29277.1 /DEF=Human isolate JuSo MUC18 glycoprotein mRNA (3 variant), complete cds. /FEA=mRNA /PROD=MUC18 glycoprotein /DB_XREF=gi:530047 /UG=Hs.211579 melanoma adhesion molecule /FL=gb:M29277.1 M29277 melanoma cell adhesion molecule /// microRNA 6756 MCAM /// MIR6756 4162 /// 102465453 NM_006500 /// NR_106814 /// XM_005271551 /// XM_005271552 /// XM_006718836 /// XM_006718837 /// XM_006718838 0003094 // glomerular filtration // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0061042 // vascular wound healing // inferred from expression pattern 0005886 // plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 480.15 1395.58 7.15 0.00 0.00 -4.43
204768_s_at 204768_s_at NM_004111 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004111.3 /DEF=Homo sapiens flap structure-specific endonuclease 1 (FEN1), mRNA. /FEA=mRNA /GEN=FEN1 /PROD=flap structure-specific endonuclease 1 /DB_XREF=gi:6325465 /UG=Hs.4756 flap structure-specific endonuclease 1 /FL=gb:BC000323.1 gb:NM_004111.3 NM_004111 flap structure-specific endonuclease 1 FEN1 2237 NM_004111 0000278 // mitotic cell cycle // traceable author statement /// 0000722 // telomere maintenance via recombination // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0000737 // DNA catabolic process, endonucleolytic // inferred from mutant phenotype /// 0000738 // DNA catabolic process, exonucleolytic // traceable author statement /// 0006260 // DNA replication // non-traceable author statement /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006281 // DNA repair // non-traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009650 // UV protection // traceable author statement /// 0032201 // telomere maintenance via semi-conservative replication // traceable author statement /// 0043137 // DNA replication, removal of RNA primer // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // traceable author statement /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from mutant phenotype /// 0003684 // damaged DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // traceable author statement /// 0004523 // RNA-DNA hybrid ribonuclease activity // inferred from direct assay /// 0004527 // exonuclease activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008309 // double-stranded DNA exodeoxyribonuclease activity // traceable author statement /// 0008409 // 5'-3' exonuclease activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0017108 // 5'-flap endonuclease activity // inferred from direct assay /// 0017108 // 5'-flap endonuclease activity // inferred from mutant phenotype /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048256 // flap endonuclease activity // inferred from electronic annotation 94.92 99.59 7.14 0.00 0.00 -4.43
203804_s_at 203804_s_at NM_006107 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006107.1 /DEF=Homo sapiens acid-inducible phosphoprotein (OA48-18), mRNA. /FEA=mRNA /GEN=OA48-18 /PROD=acid-inducible phosphoprotein /DB_XREF=gi:5174618 /UG=Hs.278670 acid-inducible phosphoprotein /FL=gb:AF069250.1 gb:NM_006107.1 NM_006107 LUC7-like 3 (S. cerevisiae) LUC7L3 51747 NM_006107 /// NM_016424 /// XM_005257448 /// XM_005257449 /// XM_005257450 /// XM_005257451 /// XM_005257452 /// XM_005257454 /// XM_005257455 /// XM_006721943 /// XR_243663 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005685 // U1 snRNP // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 208.60 190.05 7.13 0.00 0.00 -4.43
202687_s_at 202687_s_at U57059 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U57059.1 /DEF=Homo sapiens Apo-2 ligand mRNA, complete cds. /FEA=mRNA /PROD=Apo-2 ligand /DB_XREF=gi:1336207 /UG=Hs.83429 tumor necrosis factor (ligand) superfamily, member 10 /FL=gb:U37518.1 gb:U57059.1 gb:NM_003810.1 U57059 tumor necrosis factor (ligand) superfamily, member 10 TNFSF10 8743 NM_001190942 /// NM_001190943 /// NM_003810 /// NR_033994 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008584 // male gonad development // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032813 // tumor necrosis factor receptor superfamily binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -83.75 66.53 -7.13 0.00 0.00 -4.43
209669_s_at 209669_s_at BC003049 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003049.1 /DEF=Homo sapiens, Similar to DKFZP564M2423 protein, clone MGC:684, mRNA, complete cds. /FEA=mRNA /PROD=Similar to DKFZP564M2423 protein /DB_XREF=gi:12804376 /UG=Hs.324067 Homo sapiens, Similar to DKFZP564M2423 protein, clone MGC:684, mRNA, complete cds /FL=gb:BC003049.1 BC003049 SERPINE1 mRNA binding protein 1 SERBP1 26135 NM_001018067 /// NM_001018068 /// NM_001018069 /// NM_015640 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 124.05 415.40 7.13 0.00 0.00 -4.43
201225_s_at 201225_s_at NM_005839 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005839.1 /DEF=Homo sapiens SerArg-related nuclear matrix protein (plenty of prolines 101-like) (SRM160), mRNA. /FEA=mRNA /GEN=SRM160 /PROD=SerArg-related nuclear matrix protein (plentyof prolines 101-like) /DB_XREF=gi:5032118 /UG=Hs.18192 SerArg-related nuclear matrix protein (plenty of prolines 101-like) /FL=gb:AF048977.1 gb:NM_005839.1 NM_005839 serine/arginine repetitive matrix 1 SRRM1 10250 NM_005839 /// XM_005245717 /// XM_005245718 /// XM_005245719 /// XM_005245720 /// XM_005245721 /// XM_005245722 /// XR_241182 /// XR_241183 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 203.20 382.20 7.12 0.00 0.00 -4.43
201952_at 201952_at AA156721 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA156721 /FEA=EST /DB_XREF=gi:1728335 /DB_XREF=est:zl18b04.s1 /CLONE=IMAGE:502255 /UG=Hs.10247 activated leucocyte cell adhesion molecule /FL=gb:NM_001627.1 gb:L38608.1 AA156721 activated leukocyte cell adhesion molecule ALCAM 214 NM_001243280 /// NM_001243281 /// NM_001243283 /// NM_001627 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008045 // motor neuron axon guidance // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -278.55 711.58 -7.12 0.00 0.00 -4.43
202673_at 202673_at NM_003859 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003859.1 /DEF=Homo sapiens dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit (DPM1), mRNA. /FEA=mRNA /GEN=DPM1 /PROD=dolichyl-phosphate mannosyltransferasepolypeptide 1 /DB_XREF=gi:4503362 /UG=Hs.5085 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit /FL=gb:D86198.1 gb:NM_003859.1 NM_003859 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit DPM1 8813 NM_003859 /// XM_005260600 /// XM_005260601 /// XM_005260602 /// XR_244156 0006486 // protein glycosylation // inferred from electronic annotation /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0006501 // C-terminal protein lipidation // traceable author statement /// 0006506 // GPI anchor biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019348 // dolichol metabolic process // inferred from direct assay /// 0019673 // GDP-mannose metabolic process // inferred from electronic annotation /// 0035268 // protein mannosylation // inferred from direct assay /// 0035269 // protein O-linked mannosylation // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0033185 // dolichol-phosphate-mannose synthase complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from direct assay /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005537 // mannose binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043178 // alcohol binding // inferred from electronic annotation 181.28 279.66 7.11 0.00 0.00 -4.43
201709_s_at 201709_s_at NM_003634 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003634.1 /DEF=Homo sapiens NIPSNAP, C. elegans, homolog 1 (NIPSNAP1), mRNA. /FEA=mRNA /GEN=NIPSNAP1 /PROD=NIPSNAP, C. elegans, homolog 1 /DB_XREF=gi:4505398 /UG=Hs.173878 NIPSNAP, C. elegans, homolog 1 /FL=gb:BC002371.1 gb:NM_003634.1 NM_003634 nipsnap homolog 1 (C. elegans) NIPSNAP1 8508 NM_001202502 /// NM_003634 /// XM_005261789 0019233 // sensory perception of pain // inferred from electronic annotation 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0097060 // synaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0042165 // neurotransmitter binding // inferred from electronic annotation 88.10 247.53 7.10 0.00 0.00 -4.43
40148_at 40148_at U62325 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U62325:Human FE65-like protein (hFE65L) mRNA, partial cds /cds=(0,2194) /gb=U62325 /gi=1657751 /ug=Hs.15740 /len=2896 U62325 amyloid beta (A4) precursor protein-binding, family B, member 2 APBB2 323 NM_001166050 /// NM_001166051 /// NM_001166052 /// NM_001166053 /// NM_001166054 /// NM_004307 /// NM_173075 /// XM_005248101 /// XM_006714005 /// XM_006714006 /// XM_006714007 /// XM_006714008 /// XM_006714009 /// XM_006714010 /// XM_006714011 /// XM_006714012 0001764 // neuron migration // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007411 // axon guidance // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from sequence or structural similarity 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from sequence or structural similarity -89.20 110.25 -7.09 0.00 0.00 -4.43
201285_at 201285_at NM_013446 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013446.1 /DEF=Homo sapiens makorin, ring finger protein, 1 (MKRN1), mRNA. /FEA=mRNA /GEN=MKRN1 /PROD=makorin, ring finger protein, 1 /DB_XREF=gi:7305272 /UG=Hs.7838 makorin, ring finger protein, 1 /FL=gb:AL136812.1 gb:AF192784.1 gb:NM_013446.1 NM_013446 makorin ring finger protein 1 MKRN1 23608 NM_001145125 /// NM_001291663 /// NM_013446 /// NR_117084 0000209 // protein polyubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -126.82 285.04 -7.09 0.00 0.00 -4.43
202117_at 202117_at BG468434 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG468434 /FEA=EST /DB_XREF=gi:13400704 /DB_XREF=est:602510404F1 /CLONE=IMAGE:4644528 /UG=Hs.138860 Rho GTPase activating protein 1 /FL=gb:NM_004308.1 BG468434 Rho GTPase activating protein 1 ARHGAP1 392 NM_004308 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // traceable author statement /// 0009967 // positive regulation of signal transduction // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // non-traceable author statement /// 0032855 // positive regulation of Rac GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0001726 // ruffle // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // non-traceable author statement /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0030675 // Rac GTPase activator activity // inferred from electronic annotation 77.33 338.61 7.08 0.00 0.00 -4.43
214437_s_at 214437_s_at NM_005412 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005412.1 /DEF=Homo sapiens serine hydroxymethyltransferase 2 (mitochondrial) (SHMT2), mRNA. /FEA=CDS /GEN=SHMT2 /PROD=serine hydroxymethyltransferase 2(mitochondrial) /DB_XREF=gi:4885594 /UG=Hs.75069 serine hydroxymethyltransferase 2 (mitochondrial) /FL=gb:NM_005412.1 NM_005412 serine hydroxymethyltransferase 2 (mitochondrial) SHMT2 6472 NM_001166356 /// NM_001166357 /// NM_001166358 /// NM_001166359 /// NM_005412 /// NR_029415 /// NR_029416 /// NR_029417 /// NR_048562 0006544 // glycine metabolic process // inferred from electronic annotation /// 0006545 // glycine biosynthetic process // inferred from electronic annotation /// 0006563 // L-serine metabolic process // inferred from electronic annotation /// 0006564 // L-serine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0019264 // glycine biosynthetic process from serine // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0035999 // tetrahydrofolate interconversion // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003682 // chromatin binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004372 // glycine hydroxymethyltransferase activity // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008732 // L-allo-threonine aldolase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation -166.05 171.05 -7.08 0.00 0.00 -4.43
209386_at 209386_at AI346835 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI346835 /FEA=EST /DB_XREF=gi:4084041 /DB_XREF=est:qp58g11.x1 /CLONE=IMAGE:1927268 /UG=Hs.3337 transmembrane 4 superfamily member 1 /FL=gb:M90657.1 AI346835 transmembrane 4 L six family member 1 TM4SF1 4071 NM_014220 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 787.10 1777.58 7.06 0.00 0.00 -4.43
203303_at 203303_at NM_006520 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006520.1 /DEF=Homo sapiens t-complex-associated-testis-expressed 1-like (TCTE1L), mRNA. /FEA=mRNA /GEN=TCTE1L /PROD=t-complex-associated-testis-expressed 1-like /DB_XREF=gi:5730086 /UG=Hs.75307 t-complex-associated-testis-expressed 1-like /FL=gb:BC000968.2 gb:U02556.1 gb:NM_006520.1 NM_006520 dynein, light chain, Tctex-type 3 DYNLT3 6990 NM_006520 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 110.60 286.45 7.05 0.00 0.00 -4.43
203175_at 203175_at NM_001665 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001665.1 /DEF=Homo sapiens ras homolog gene family, member G (rho G) (ARHG), mRNA. /FEA=mRNA /GEN=ARHG /PROD=ras homolog gene family, member G (rho G) /DB_XREF=gi:4502218 /UG=Hs.75082 ras homolog gene family, member G (rho G) /FL=gb:NM_001665.1 NM_001665 ras homolog family member G RHOG 391 NM_001665 /// XM_005252916 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from direct assay /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // inferred from direct assay /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0032863 // activation of Rac GTPase activity // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0060326 // cell chemotaxis // inferred from mutant phenotype /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 114.60 306.90 7.04 0.00 0.00 -4.43
205070_at 205070_at NM_019071 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019071.1 /DEF=Homo sapiens inhibitor of growth family, member 3 (ING3), mRNA. /FEA=mRNA /GEN=ING3 /PROD=inhibitor of growth family, member 3 /DB_XREF=gi:9506658 /UG=Hs.143198 inhibitor of growth family, member 3 /FL=gb:AF074968.1 gb:AY007790.1 gb:NM_019071.1 NM_019071 inhibitor of growth family, member 3 ING3 54556 NM_019071 /// NM_198266 /// NM_198267 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043967 // histone H4 acetylation // inferred from direct assay /// 0043968 // histone H2A acetylation // inferred from direct assay 0000812 // Swr1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0032777 // Piccolo NuA4 histone acetyltransferase complex // inferred from direct assay /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -62.95 94.67 -7.04 0.00 0.00 -4.43
205798_at 205798_at NM_002185 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002185.1 /DEF=Homo sapiens interleukin 7 receptor (IL7R), mRNA. /FEA=mRNA /GEN=IL7R /PROD=interleukin 7 receptor /DB_XREF=gi:4504678 /UG=Hs.237868 interleukin 7 receptor /FL=gb:M29696.1 gb:NM_002185.1 NM_002185 interleukin 7 receptor IL7R 3575 NM_002185 /// NR_120485 /// XM_005248299 /// XM_005248300 0000018 // regulation of DNA recombination // traceable author statement /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002377 // immunoglobulin production // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0008361 // regulation of cell size // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016049 // cell growth // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0033089 // positive regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0038111 // interleukin-7-mediated signaling pathway // traceable author statement /// 0042100 // B cell proliferation // inferred from electronic annotation /// 0048535 // lymph node development // inferred from electronic annotation /// 0048872 // homeostasis of number of cells // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003823 // antigen binding // traceable author statement /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004917 // interleukin-7 receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -138.30 114.88 -7.04 0.00 0.00 -4.43
213129_s_at 213129_s_at AI970157 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI970157 /FEA=EST /DB_XREF=gi:5766983 /DB_XREF=est:wq89h08.x1 /CLONE=IMAGE:2479263 /UG=Hs.77631 glycine cleavage system protein H (aminomethyl carrier) AI970157 glycine cleavage system protein H (aminomethyl carrier) /// glycine cleavage system H protein, mitochondrial-like GCSH /// LOC101060817 2653 /// 101060817 NM_004483 /// NR_033249 /// XM_003960892 0006546 // glycine catabolic process // traceable author statement /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0032259 // methylation // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005960 // glycine cleavage complex // inferred from electronic annotation 0004047 // aminomethyltransferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation 122.57 194.99 7.03 0.00 0.00 -4.43
203076_s_at 203076_s_at U65019 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U65019.1 /DEF=Human MAD-related protein 2 (MADR2) mRNA, complete cds. /FEA=mRNA /GEN=MADR2 /PROD=MAD-related protein 2 /DB_XREF=gi:1575529 /UG=Hs.82483 MAD (mothers against decapentaplegic, Drosophila) homolog 2 /FL=gb:U59911.1 gb:U68018.1 gb:U65019.1 gb:AF027964.1 gb:NM_005901.1 U65019 SMAD family member 2 SMAD2 4087 NM_001003652 /// NM_001135937 /// NM_005901 /// XM_005258259 /// XM_006722451 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007182 // common-partner SMAD protein phosphorylation // inferred from direct assay /// 0007183 // SMAD protein complex assembly // inferred from direct assay /// 0007352 // zygotic specification of dorsal/ventral axis // inferred from mutant phenotype /// 0007369 // gastrulation // traceable author statement /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0023019 // signal transduction involved in regulation of gene expression // inferred from electronic annotation /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030513 // positive regulation of BMP signaling pathway // inferred from mutant phenotype /// 0031016 // pancreas development // inferred from electronic annotation /// 0031053 // primary miRNA processing // traceable author statement /// 0032924 // activin receptor signaling pathway // inferred from mutant phenotype /// 0035265 // organ growth // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from sequence or structural similarity /// 0038092 // nodal signaling pathway // inferred from mutant phenotype /// 0045165 // cell fate commitment // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048340 // paraxial mesoderm morphogenesis // inferred from sequence or structural similarity /// 0048589 // developmental growth // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0051098 // regulation of binding // inferred from sequence or structural similarity /// 0060021 // palate development // inferred from sequence or structural similarity /// 0060039 // pericardium development // inferred from electronic annotation /// 0070723 // response to cholesterol // inferred from direct assay /// 1900224 // positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0032444 // activin responsive factor complex // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0071141 // SMAD protein complex // inferred from direct assay /// 0071144 // SMAD2-SMAD3 protein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005160 // transforming growth factor beta receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019902 // phosphatase binding // inferred from physical interaction /// 0030618 // transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0033613 // activating transcription factor binding // inferred from physical interaction /// 0034713 // type I transforming growth factor beta receptor binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred by curator /// 0046332 // SMAD binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from physical interaction /// 0070411 // I-SMAD binding // inferred from physical interaction /// 0070412 // R-SMAD binding // inferred from physical interaction -146.38 288.56 -7.03 0.00 0.00 -4.43
202594_at 202594_at NM_015344 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015344.1 /DEF=Homo sapiens MY047 protein (MY047), mRNA. /FEA=mRNA /GEN=MY047 /PROD=MY047 protein /DB_XREF=gi:7662509 /UG=Hs.11000 leptin receptor overlapping transcript-like 1 /FL=gb:BC000642.1 gb:AF063605.1 gb:AF161461.1 gb:NM_015344.1 NM_015344 leptin receptor overlapping transcript-like 1 LEPROTL1 23484 NM_001128208 /// NM_015344 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 82.95 166.18 7.02 0.00 0.00 -4.43
218099_at 218099_at NM_018469 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018469.1 /DEF=Homo sapiens uncharacterized hypothalamus protein HT008 (HT008), mRNA. /FEA=mRNA /GEN=HT008 /PROD=uncharacterized hypothalamus protein HT008 /DB_XREF=gi:8923803 /UG=Hs.16206 uncharacterized hypothalamus protein HT008 /FL=gb:AF220182.1 gb:NM_018469.1 NM_018469 testis expressed 2 TEX2 55852 NM_001288732 /// NM_001288733 /// NM_018469 /// XM_005257507 0006665 // sphingolipid metabolic process // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0021859 // pyramidal neuron differentiation // inferred from electronic annotation 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0005543 // phospholipid binding // inferred from electronic annotation 87.00 103.17 7.01 0.00 0.00 -4.43
218541_s_at 218541_s_at NM_020130 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020130.1 /DEF=Homo sapiens chromosome 8 open reading frame 4 (C8ORF4), mRNA. /FEA=mRNA /GEN=C8ORF4 /PROD=chromosome 8 open reading frame 4 /DB_XREF=gi:9910147 /UG=Hs.283683 chromosome 8 open reading frame 4 /FL=gb:AF268037.1 gb:NM_020130.1 NM_020130 chromosome 8 open reading frame 4 C8orf4 56892 NM_020130 0006915 // apoptotic process // inferred from electronic annotation -86.93 70.06 -7.01 0.00 0.00 -4.43
205967_at 205967_at NM_003542 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003542.2 /DEF=Homo sapiens H4 histone family, member G (H4FG), mRNA. /FEA=mRNA /GEN=H4FG /PROD=H4 histone family, member G /DB_XREF=gi:5579465 /UG=Hs.46423 H4 histone family, member G /FL=gb:NM_003542.2 NM_003542 histone cluster 1, H4a /// histone cluster 1, H4b /// histone cluster 1, H4c /// histone cluster 1, H4d /// histone cluster 1, H4e /// histone cluster 1, H4f /// histone cluster 1, H4h /// histone cluster 1, H4i /// histone cluster 1, H4j /// histone cluster 1, H4k /// histone cluster 1, H4l /// histone cluster 2, H4a /// histone cluster 2, H4b /// histone cluster 4, H4 HIST1H4A /// HIST1H4B /// HIST1H4C /// HIST1H4D /// HIST1H4E /// HIST1H4F /// HIST1H4H /// HIST1H4I /// HIST1H4J /// HIST1H4K /// HIST1H4L /// HIST2H4A /// HIST2H4B /// HIST4H4 8294 /// 8359 /// 8360 /// 8361 /// 8362 /// 8363 /// 8364 /// 8365 /// 8366 /// 8367 /// 8368 /// 8370 /// 121504 /// 554313 NM_001034077 /// NM_003495 /// NM_003538 /// NM_003539 /// NM_003540 /// NM_003541 /// NM_003542 /// NM_003543 /// NM_003544 /// NM_003545 /// NM_003546 /// NM_003548 /// NM_021968 /// NM_175054 0000278 // mitotic cell cycle // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0006325 // chromatin organization // non-traceable author statement /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // traceable author statement /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006352 // DNA-templated transcription, initiation // inferred from electronic annotation /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0035574 // histone H4-K20 demethylation // traceable author statement /// 0045653 // negative regulation of megakaryocyte differentiation // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0035575 // histone demethylase activity (H4-K20 specific) // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -107.57 228.96 -7.01 0.00 0.00 -4.43
209377_s_at 209377_s_at AF274949 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF274949.1 /DEF=Homo sapiens PNAS-24 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-24 /DB_XREF=gi:12751062 /UG=Hs.77558 thyroid hormone receptor interactor 7 /FL=gb:AF274949.1 AF274949 high mobility group nucleosomal binding domain 3 HMGN3 9324 NM_001201362 /// NM_001201363 /// NM_004242 /// NM_138730 /// XM_005248768 /// XM_005248769 /// XM_006715604 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0061178 // regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // non-traceable author statement 338.45 610.73 7.00 0.00 0.00 -4.43
218627_at 218627_at NM_018370 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018370.1 /DEF=Homo sapiens hypothetical protein FLJ11259 (FLJ11259), mRNA. /FEA=mRNA /GEN=FLJ11259 /PROD=hypothetical protein FLJ11259 /DB_XREF=gi:8922957 /UG=Hs.184465 hypothetical protein FLJ11259 /FL=gb:NM_018370.1 NM_018370 DNA-damage regulated autophagy modulator 1 DRAM1 55332 NM_018370 /// XM_005269004 /// XM_005269005 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0030262 // apoptotic nuclear changes // inferred from direct assay /// 0097194 // execution phase of apoptosis // inferred by curator 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -140.68 273.49 -7.00 0.00 0.00 -4.43
211727_s_at 211727_s_at BC005895 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005895.1 /DEF=Homo sapiens, COX11 (yeast) homolog, cytochrome c oxidase assembly protein, clone MGC:14469, mRNA, complete cds. /FEA=mRNA /PROD=COX11 (yeast) homolog, cytochrome c oxidaseassembly protein /DB_XREF=gi:13543474 /FL=gb:BC005895.1 BC005895 cytochrome c oxidase assembly homolog 11 (yeast) COX11 1353 NM_001162861 /// NM_001162862 /// NM_004375 /// NR_027941 /// NR_027942 /// XM_006721704 /// XM_006721705 0007585 // respiratory gaseous exchange // traceable author statement /// 0008535 // respiratory chain complex IV assembly // traceable author statement /// 0033132 // negative regulation of glucokinase activity // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement 98.50 149.60 7.00 0.00 0.00 -4.43
207941_s_at 207941_s_at NM_004902 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004902.1 /DEF=Homo sapiens splicing factor (CC1.3) (CC1.3), mRNA. /FEA=mRNA /GEN=CC1.3 /PROD=splicing factor (CC1.3) /DB_XREF=gi:4757925 /UG=Hs.145696 splicing factor (CC1.3) /FL=gb:L10910.1 gb:NM_004902.1 NM_004902 RNA binding motif protein 39 RBM39 9584 NM_001242599 /// NM_001242600 /// NM_004902 /// NM_184234 /// NM_184237 /// NM_184241 /// NM_184244 /// NR_040722 /// NR_040723 /// NR_040724 /// XM_006723890 /// XM_006723891 /// XM_006723892 /// XM_006723893 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 125.57 350.99 6.99 0.00 0.00 -4.43
201818_at 201818_at NM_024830 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024830.1 /DEF=Homo sapiens hypothetical protein FLJ12443 (FLJ12443), mRNA. /FEA=mRNA /GEN=FLJ12443 /PROD=hypothetical protein FLJ12443 /DB_XREF=gi:13376233 /UG=Hs.179882 hypothetical protein FLJ12443 /FL=gb:NM_024830.1 NM_024830 lysophosphatidylcholine acyltransferase 1 LPCAT1 79888 NM_024830 /// XM_005248373 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006654 // phosphatidic acid biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from sequence or structural similarity /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0036148 // phosphatidylglycerol acyl-chain remodeling // traceable author statement /// 0036151 // phosphatidylcholine acyl-chain remodeling // inferred from direct assay /// 0036151 // phosphatidylcholine acyl-chain remodeling // traceable author statement /// 0043129 // surfactant homeostasis // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 2001246 // negative regulation of phosphatidylcholine biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047159 // 1-alkenylglycerophosphocholine O-acyltransferase activity // inferred from electronic annotation /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // inferred from direct assay /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // inferred from sequence or structural similarity /// 0047191 // 1-alkylglycerophosphocholine O-acyltransferase activity // inferred from electronic annotation /// 0047192 // 1-alkylglycerophosphocholine O-acetyltransferase activity // inferred from electronic annotation 75.60 84.05 6.99 0.00 0.00 -4.43
209218_at 209218_at AF098865 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF098865.1 /DEF=Homo sapiens squalene epoxidase (ERG1) mRNA, complete cds. /FEA=mRNA /GEN=ERG1 /PROD=squalene epoxidase /DB_XREF=gi:4204674 /UG=Hs.71465 squalene epoxidase /FL=gb:D78130.1 gb:AF098865.1 gb:NM_003129.2 AF098865 squalene epoxidase SQLE 6713 NM_003129 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006725 // cellular aromatic compound metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // non-traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // non-traceable author statement 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004506 // squalene monooxygenase activity // non-traceable author statement /// 0004506 // squalene monooxygenase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation 240.80 276.27 6.99 0.00 0.00 -4.43
206138_s_at 206138_s_at NM_002651 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002651.1 /DEF=Homo sapiens phosphatidylinositol 4-kinase, catalytic, beta polypeptide (PIK4CB), mRNA. /FEA=mRNA /GEN=PIK4CB /PROD=phosphatidylinositol 4-kinase, catalytic, betapolypeptide /DB_XREF=gi:4505808 /UG=Hs.154846 phosphatidylinositol 4-kinase, catalytic, beta polypeptide /FL=gb:AB005910.1 gb:NM_002651.1 NM_002651 phosphatidylinositol 4-kinase, catalytic, beta PI4KB 5298 NM_001198773 /// NM_001198774 /// NM_001198775 /// NM_002651 /// XM_005245261 /// XM_005245262 /// XM_005245263 /// XM_005245264 /// XM_005245265 /// XM_006711385 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0048015 // phosphatidylinositol-mediated signaling // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005768 // endosome // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004430 // 1-phosphatidylinositol 4-kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 113.10 142.10 6.99 0.00 0.00 -4.43
206855_s_at 206855_s_at NM_003773 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003773.1 /DEF=Homo sapiens hyaluronoglucosaminidase 2 (HYAL2), mRNA. /FEA=mRNA /GEN=HYAL2 /PROD=hyaluronoglucosaminidase 2 /DB_XREF=gi:4504550 /UG=Hs.76873 hyaluronoglucosaminidase 2 /FL=gb:U09577.1 gb:NM_003773.1 NM_003773 hyaluronoglucosaminidase 2 HYAL2 8692 NM_003773 /// NM_033158 /// XM_005265524 /// XM_005265525 0000302 // response to reactive oxygen species // inferred from direct assay /// 0001822 // kidney development // inferred from sequence or structural similarity /// 0002244 // hematopoietic progenitor cell differentiation // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009615 // response to virus // inferred from direct assay /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0010764 // negative regulation of fibroblast migration // inferred from direct assay /// 0019064 // fusion of virus membrane with host plasma membrane // inferred from direct assay /// 0019087 // transformation of host cell by virus // inferred from direct assay /// 0019087 // transformation of host cell by virus // inferred from sequence or structural similarity /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // inferred from direct assay /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0035810 // positive regulation of urine volume // inferred from sequence or structural similarity /// 0042117 // monocyte activation // inferred from direct assay /// 0042307 // positive regulation of protein import into nucleus // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0046677 // response to antibiotic // inferred from expression pattern /// 0046718 // viral entry into host cell // inferred from sequence or structural similarity /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from direct assay /// 0051216 // cartilage development // inferred from expression pattern /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling // inferred from direct assay /// 0060586 // multicellular organismal iron ion homeostasis // inferred from electronic annotation /// 0061099 // negative regulation of protein tyrosine kinase activity // inferred from direct assay /// 0070295 // renal water absorption // inferred from sequence or structural similarity /// 0071347 // cellular response to interleukin-1 // inferred from direct assay /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071493 // cellular response to UV-B // inferred from direct assay /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from direct assay /// 2000484 // positive regulation of interleukin-8 secretion // inferred from direct assay /// 2000778 // positive regulation of interleukin-6 secretion // inferred from direct assay /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005902 // microvillus // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from direct assay /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0031362 // anchored component of external side of plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0046658 // anchored component of plasma membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001618 // virus receptor activity // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004415 // hyalurononglucosaminidase activity // inferred from direct assay /// 0004415 // hyalurononglucosaminidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005540 // hyaluronic acid binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030294 // receptor signaling protein tyrosine kinase inhibitor activity // inferred from direct assay /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0033906 // hyaluronoglucuronidase activity // inferred from direct assay /// 0050431 // transforming growth factor beta binding // inferred from sequence or structural similarity 221.47 433.11 6.99 0.00 0.00 -4.43
212048_s_at 212048_s_at AW245400 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW245400 /FEA=EST /DB_XREF=gi:6588393 /DB_XREF=est:2822751.3prime /CLONE=IMAGE:2822751 /UG=Hs.239307 tyrosyl-tRNA synthetase AW245400 tyrosyl-tRNA synthetase YARS 8565 NM_003680 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006437 // tyrosyl-tRNA aminoacylation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005615 // extracellular space // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004831 // tyrosine-tRNA ligase activity // traceable author statement /// 0004871 // signal transducer activity // non-traceable author statement /// 0005153 // interleukin-8 receptor binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -403.00 581.27 -6.98 0.00 0.00 -4.43
213094_at 213094_at AL033377 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL033377 /DEF=Human DNA sequence from clone 287G14 on chromosome 6q23.1-24.3. Contains a novel seven transmembrane domain protein gene, and an exon similar to parts of BMP and Tolloid genes. Contains ESTs, an STS and GSSs /FEA=mRNA_3 /DB_XREF=gi:4826462 /UG=Hs.44197 hypothetical protein DKFZp564D0462 AL033377 G protein-coupled receptor 126 GPR126 57211 NM_001032394 /// NM_001032395 /// NM_020455 /// NM_198569 /// XM_005267061 /// XM_006715516 /// XM_006715517 /// XM_006715518 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 149.78 236.39 6.98 0.00 0.00 -4.43
33304_at 33304_at U88964 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U88964:Human HEM45 mRNA, complete cds /cds=(37,582) /gb=U88964 /gi=2062679 /ug=Hs.183487 /len=701 U88964 interferon stimulated exonuclease gene 20kDa ISG20 3669 NM_002201 /// XM_005254899 /// XM_005254900 /// XM_006720488 /// XM_006720489 /// XM_006720490 0000738 // DNA catabolic process, exonucleolytic // inferred from direct assay /// 0002376 // immune system process // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006401 // RNA catabolic process // inferred from direct assay /// 0008283 // cell proliferation // traceable author statement /// 0009615 // response to virus // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0045071 // negative regulation of viral genome replication // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from mutant phenotype /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from direct assay /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0000175 // 3'-5'-exoribonuclease activity // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from mutant phenotype /// 0008310 // single-stranded DNA 3'-5' exodeoxyribonuclease activity // inferred from direct assay /// 0008859 // exoribonuclease II activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030619 // U1 snRNA binding // inferred from direct assay /// 0030620 // U2 snRNA binding // inferred from direct assay /// 0034511 // U3 snoRNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -72.43 77.54 -6.97 0.00 0.00 -4.43
201889_at 201889_at NM_014888 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014888.1 /DEF=Homo sapiens predicted osteoblast protein (GS3786), mRNA. /FEA=mRNA /GEN=GS3786 /PROD=predicted osteoblast protein /DB_XREF=gi:7661713 /UG=Hs.29882 predicted osteoblast protein /FL=gb:D87120.1 gb:NM_014888.1 NM_014888 family with sequence similarity 3, member C FAM3C 10447 NM_001040020 /// NM_014888 0007275 // multicellular organismal development // inferred from electronic annotation 0005576 // extracellular region // non-traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005125 // cytokine activity // non-traceable author statement 153.33 213.39 6.97 0.00 0.00 -4.43
220987_s_at 220987_s_at NM_030952 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030952.1 /DEF=Homo sapiens hypothetical protein DKFZp434J037 (DKFZP434J037), mRNA. /FEA=mRNA /GEN=DKFZP434J037 /PROD=hypothetical protein DKFZp434J037 /DB_XREF=gi:13569921 /FL=gb:NM_030952.1 NM_030952 A kinase (PRKA) interacting protein 1 /// NUAK family, SNF1-like kinase, 2 AKIP1 /// NUAK2 56672 /// 81788 NM_001206645 /// NM_001206646 /// NM_001206647 /// NM_001206648 /// NM_020642 /// NM_030952 /// NM_182901 /// NR_045417 /// NR_045418 /// XM_005245515 /// XM_006718264 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -88.67 87.86 -6.96 0.00 0.00 -4.43
218330_s_at 218330_s_at NM_018162 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018162.1 /DEF=Homo sapiens hypothetical protein FLJ10633 (FLJ10633), mRNA. /FEA=mRNA /GEN=FLJ10633 /PROD=hypothetical protein FLJ10633 /DB_XREF=gi:9506612 /UG=Hs.23467 hypothetical protein FLJ10633 /FL=gb:NM_018162.1 NM_018162 neuron navigator 2 NAV2 89797 NM_001111018 /// NM_001111019 /// NM_001244963 /// NM_145117 /// NM_182964 /// XM_005253214 /// XM_006718364 /// XM_006718365 /// XM_006718366 /// XM_006718367 /// XM_006718368 /// XM_006718369 0003025 // regulation of systemic arterial blood pressure by baroreceptor feedback // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0021554 // optic nerve development // inferred from electronic annotation /// 0021563 // glossopharyngeal nerve development // inferred from electronic annotation /// 0021564 // vagus nerve development // inferred from electronic annotation 0005614 // interstitial matrix // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation -276.80 305.45 -6.96 0.00 0.00 -4.43
201194_at 201194_at NM_003009 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003009.1 /DEF=Homo sapiens selenoprotein W, 1 (SEPW1), mRNA. /FEA=mRNA /GEN=SEPW1 /PROD=selenoprotein W, 1 /DB_XREF=gi:4506886 /UG=Hs.14231 selenoprotein W, 1 /FL=gb:U67171.1 gb:AF015283.1 gb:NM_003009.1 NM_003009 selenoprotein W, 1 SEPW1 6415 NM_003009 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008430 // selenium binding // inferred from electronic annotation /// 0016209 // antioxidant activity // inferred from electronic annotation 110.10 262.18 6.96 0.00 0.00 -4.43
217798_at 217798_at AI123426 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI123426 /FEA=EST /DB_XREF=gi:3539192 /DB_XREF=est:qa49c09.x1 /CLONE=IMAGE:1690096 /UG=Hs.239720 CCR4-NOT transcription complex, subunit 2 /FL=gb:AF113226.1 gb:AF180473.1 gb:NM_014515.1 AI123426 CCR4-NOT transcription complex, subunit 2 CNOT2 4848 NM_001199302 /// NM_001199303 /// NM_014515 /// NR_037615 /// XM_006719429 /// XM_006719430 /// XM_006719431 /// XM_006719432 /// XM_006719433 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010606 // positive regulation of cytoplasmic mRNA processing body assembly // inferred from mutant phenotype /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0033147 // negative regulation of intracellular estrogen receptor signaling pathway // inferred from mutant phenotype /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from mutant phenotype /// 2000036 // regulation of stem cell maintenance // inferred from mutant phenotype 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030014 // CCR4-NOT complex // inferred from direct assay 0001104 // RNA polymerase II transcription cofactor activity // traceable author statement /// 0001226 // RNA polymerase II transcription corepressor binding // inferred from direct assay /// 0004535 // poly(A)-specific ribonuclease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction -96.93 258.36 -6.95 0.00 0.00 -4.43
203723_at 203723_at NM_002221 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002221.1 /DEF=Homo sapiens inositol 1,4,5-trisphosphate 3-kinase B (ITPKB), mRNA. /FEA=mRNA /GEN=ITPKB /PROD=1D-myo-inositol-trisphosphate 3-kinase B /DB_XREF=gi:4504790 /UG=Hs.78877 inositol 1,4,5-trisphosphate 3-kinase B /FL=gb:NM_002221.1 NM_002221 inositol-trisphosphate 3-kinase B ITPKB 3707 NM_002221 /// XM_005273120 0000165 // MAPK cascade // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045061 // thymic T cell selection // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol-1,4,5-trisphosphate 3-kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -106.43 162.44 -6.95 0.00 0.00 -4.43
217739_s_at 217739_s_at NM_005746 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005746.1 /DEF=Homo sapiens pre-B-cell colony-enhancing factor (PBEF), mRNA. /FEA=mRNA /GEN=PBEF /PROD=pre-B-cell colony-enhancing factor /DB_XREF=gi:5031976 /UG=Hs.239138 pre-B-cell colony-enhancing factor /FL=gb:U02020.1 gb:NM_005746.1 NM_005746 nicotinamide phosphoribosyltransferase NAMPT 10135 NM_005746 /// NM_182790 /// XM_005250100 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006769 // nicotinamide metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // inferred from direct assay /// 0060612 // adipose tissue development // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0047280 // nicotinamide phosphoribosyltransferase activity // inferred from electronic annotation -205.62 463.79 -6.94 0.00 0.00 -4.43
208841_s_at 208841_s_at AB014560 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB014560.1 /DEF=Homo sapiens mRNA for KIAA0660 protein, complete cds. /FEA=mRNA /GEN=KIAA0660 /PROD=KIAA0660 protein /DB_XREF=gi:3327133 /UG=Hs.6727 Ras-GTPase activating protein SH3 domain-binding protein 2 /FL=gb:AB014560.1 AB014560 GTPase activating protein (SH3 domain) binding protein 2 G3BP2 9908 NM_012297 /// NM_203504 /// NM_203505 /// XM_005263382 /// XM_005263383 /// XM_005263384 /// XM_005263385 /// XM_005263386 0006810 // transport // inferred from electronic annotation /// 0007253 // cytoplasmic sequestering of NF-kappaB // non-traceable author statement /// 0007265 // Ras protein signal transduction // non-traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0030159 // receptor signaling complex scaffold activity // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 134.55 388.43 6.93 0.00 0.00 -4.43
200755_s_at 200755_s_at BF939365 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF939365 /FEA=EST /DB_XREF=gi:12356685 /DB_XREF=est:nad87h04.x1 /CLONE=IMAGE:3410551 /UG=Hs.7753 calumenin /FL=gb:U67280.1 gb:AF013759.1 gb:NM_001219.2 BF939365 calumenin CALU 813 NM_001130674 /// NM_001199671 /// NM_001199672 /// NM_001199673 /// NM_001199674 /// NM_001219 /// NR_074086 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 201.03 326.91 6.93 0.00 0.00 -4.43
204905_s_at 204905_s_at NM_004280 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004280.1 /DEF=Homo sapiens eukaryotic translation elongation factor 1 epsilon 1 (EEF1E1), mRNA. /FEA=mRNA /GEN=EEF1E1 /PROD=eukaryotic translation elongation factor 1epsilon 1 /DB_XREF=gi:4758861 /UG=Hs.298581 eukaryotic translation elongation factor 1 epsilon 1 /FL=gb:BC005291.1 gb:AB011079.1 gb:AF054186.1 gb:NM_004280.1 NM_004280 eukaryotic translation elongation factor 1 epsilon 1 EEF1E1 9521 NM_001135650 /// NM_004280 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from sequence or structural similarity /// 0043517 // positive regulation of DNA damage response, signal transduction by p53 class mediator // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 103.13 236.09 6.93 0.00 0.00 -4.43
208763_s_at 208763_s_at AL110191 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL110191.1 /DEF=Homo sapiens mRNA; cDNA DKFZp566A093 (from clone DKFZp566A093); complete cds. /FEA=mRNA /GEN=DKFZp566A093 /PROD=hypothetical protein /DB_XREF=gi:5817105 /UG=Hs.75450 delta sleep inducing peptide, immunoreactor /FL=gb:AF228339.1 gb:AF153603.1 gb:AL110191.1 gb:AF183393.1 AL110191 TSC22 domain family, member 3 TSC22D3 1831 NM_001015881 /// NM_004089 /// NM_198057 /// XM_005262098 /// XM_005262099 /// XM_005262100 /// XM_005262101 /// XM_005262102 /// XM_005262103 /// XM_006724629 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0007589 // body fluid secretion // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0048642 // negative regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0070236 // negative regulation of activation-induced cell death of T cells // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043426 // MRF binding // inferred from electronic annotation -114.27 139.44 -6.93 0.00 0.00 -4.43
204033_at 204033_at NM_004237 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004237.1 /DEF=Homo sapiens thyroid hormone receptor interactor 13 (TRIP13), mRNA. /FEA=mRNA /GEN=TRIP13 /PROD=thyroid hormone receptor interactor 13 /DB_XREF=gi:11321606 /UG=Hs.6566 thyroid hormone receptor interactor 13 /FL=gb:NM_004237.1 gb:BC000404.1 gb:U96131.1 NM_004237 thyroid hormone receptor interactor 13 TRIP13 9319 NM_001166260 /// NM_004237 /// XM_005248388 0001556 // oocyte maturation // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from sequence or structural similarity /// 0007131 // reciprocal meiotic recombination // inferred from sequence or structural similarity /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007144 // female meiosis I // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007286 // spermatid development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0048477 // oogenesis // inferred from sequence or structural similarity /// 2001141 // regulation of RNA biosynthetic process // traceable author statement 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // non-traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 85.53 142.61 6.92 0.00 0.00 -4.43
202539_s_at 202539_s_at AL518627 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL518627 /FEA=EST /DB_XREF=gi:12782120 /DB_XREF=est:AL518627 /CLONE=CS0DA009YG15 (3 prime) /UG=Hs.11899 3-hydroxy-3-methylglutaryl-Coenzyme A reductase /FL=gb:M11058.1 gb:NM_000859.1 AL518627 3-hydroxy-3-methylglutaryl-CoA reductase HMGCR 3156 NM_000859 /// NM_001130996 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006743 // ubiquinone metabolic process // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0010664 // negative regulation of striated muscle cell apoptotic process // inferred from electronic annotation /// 0010666 // positive regulation of cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0015936 // coenzyme A metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045908 // negative regulation of vasodilation // inferred from electronic annotation /// 0048643 // positive regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0051262 // protein tetramerization // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061045 // negative regulation of wound healing // inferred from electronic annotation /// 0061179 // negative regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation 0005778 // peroxisomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004420 // hydroxymethylglutaryl-CoA reductase (NADPH) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008158 // hedgehog receptor activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042282 // hydroxymethylglutaryl-CoA reductase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from direct assay /// 0070402 // NADPH binding // inferred from direct assay 79.20 84.33 6.92 0.00 0.00 -4.43
204331_s_at 204331_s_at NM_021107 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021107.1 /DEF=Homo sapiens mitochondrial ribosomal protein S12 (MRPS12), mRNA. /FEA=mRNA /GEN=MRPS12 /PROD=mitochondrial ribosomal protein S12 /DB_XREF=gi:11056055 /UG=Hs.9964 mitochondrial ribosomal protein S12 /FL=gb:NM_021107.1 NM_021107 mitochondrial ribosomal protein S12 MRPS12 6183 NM_021107 /// NM_033362 /// NM_033363 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 69.20 209.53 6.91 0.00 0.00 -4.43
208405_s_at 208405_s_at NM_006016 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006016.1 /DEF=Homo sapiens CD164 antigen, sialomucin (CD164), mRNA. /FEA=mRNA /GEN=CD164 /PROD=CD164 antigen, sialomucin /DB_XREF=gi:5174406 /UG=Hs.43910 CD164 antigen, sialomucin /FL=gb:D14043.1 gb:NM_006016.1 NM_006016 CD164 molecule, sialomucin CD164 8763 NM_001142401 /// NM_001142402 /// NM_001142403 /// NM_001142404 /// NM_006016 0006955 // immune response // traceable author statement /// 0007155 // cell adhesion // inferred from direct assay /// 0007157 // heterophilic cell-cell adhesion // inferred from direct assay /// 0007162 // negative regulation of cell adhesion // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0007517 // muscle organ development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // non-traceable author statement /// 0030097 // hemopoiesis // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 300.80 520.20 6.91 0.00 0.00 -4.43
209897_s_at 209897_s_at AF055585 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF055585.1 /DEF=Homo sapiens neurogenic extracellular slit protein Slit2 mRNA, complete cds. /FEA=mRNA /PROD=neurogenic extracellular slit protein Slit2 /DB_XREF=gi:4151204 /UG=Hs.29802 slit (Drosophila) homolog 2 /FL=gb:AF055585.1 gb:AF133270.1 AF055585 slit homolog 2 (Drosophila) SLIT2 9353 NM_001289135 /// NM_001289136 /// NM_004787 /// XM_005248211 /// XM_005248214 /// XM_006713986 0001656 // metanephros development // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from mutant phenotype /// 0002689 // negative regulation of leukocyte chemotaxis // inferred from direct assay /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay /// 0007411 // axon guidance // traceable author statement /// 0008045 // motor neuron axon guidance // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010593 // negative regulation of lamellipodium assembly // inferred from direct assay /// 0010596 // negative regulation of endothelial cell migration // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // inferred from direct assay /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0021772 // olfactory bulb development // inferred from electronic annotation /// 0021834 // chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration // inferred from direct assay /// 0021836 // chemorepulsion involved in postnatal olfactory bulb interneuron migration // inferred from direct assay /// 0021972 // corticospinal neuron axon guidance through spinal cord // inferred from mutant phenotype /// 0022029 // telencephalon cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030837 // negative regulation of actin filament polymerization // inferred from direct assay /// 0031290 // retinal ganglion cell axon guidance // inferred from direct assay /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033563 // dorsal/ventral axon guidance // inferred from electronic annotation /// 0035385 // Roundabout signaling pathway // inferred by curator /// 0035385 // Roundabout signaling pathway // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0043116 // negative regulation of vascular permeability // inferred from direct assay /// 0048754 // branching morphogenesis of an epithelial tube // inferred from direct assay /// 0048754 // branching morphogenesis of an epithelial tube // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048846 // axon extension involved in axon guidance // inferred from direct assay /// 0050772 // positive regulation of axonogenesis // traceable author statement /// 0050919 // negative chemotaxis // inferred from direct assay /// 0050919 // negative chemotaxis // inferred from mutant phenotype /// 0050929 // induction of negative chemotaxis // inferred from direct assay /// 0051058 // negative regulation of small GTPase mediated signal transduction // inferred from direct assay /// 0051414 // response to cortisol // inferred from expression pattern /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0061364 // apoptotic process involved in luteolysis // inferred from expression pattern /// 0070100 // negative regulation of chemokine-mediated signaling pathway // inferred from mutant phenotype /// 0071504 // cellular response to heparin // inferred from direct assay /// 0071672 // negative regulation of smooth muscle cell chemotaxis // inferred from direct assay /// 0071676 // negative regulation of mononuclear cell migration // inferred from direct assay /// 0090024 // negative regulation of neutrophil chemotaxis // inferred from direct assay /// 0090027 // negative regulation of monocyte chemotaxis // inferred from sequence or structural similarity /// 0090260 // negative regulation of retinal ganglion cell axon guidance // inferred from direct assay /// 0090288 // negative regulation of cellular response to growth factor stimulus // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005095 // GTPase inhibitor activity // inferred from direct assay /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043237 // laminin-1 binding // inferred from direct assay /// 0043394 // proteoglycan binding // inferred from physical interaction /// 0045499 // chemorepellent activity // inferred from electronic annotation /// 0048495 // Roundabout binding // inferred from physical interaction -69.62 129.41 -6.91 0.00 0.00 -4.43
211937_at 211937_at NM_001417 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_001417.1 /DEF=Homo sapiens eukaryotic translation initiation factor 4B (EIF4B), mRNA. /FEA=CDS /GEN=EIF4B /PROD=eukaryotic translation initiation factor 4B /DB_XREF=gi:4503532 /UG=Hs.93379 eukaryotic translation initiation factor 4B /FL=gb:NM_001417.1 NM_001417 eukaryotic translation initiation factor 4B EIF4B 1975 NM_001417 /// NM_018507 /// XM_005268709 /// XM_006719274 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016281 // eukaryotic translation initiation factor 4F complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -445.77 877.49 -6.91 0.00 0.00 -4.43
202286_s_at 202286_s_at J04152 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:J04152 /DEF=Human gastrointestinal tumor-associated antigen GA733-1 protein gene, complete cds, clone 05516 /FEA=mRNA /DB_XREF=gi:182893 /UG=Hs.23582 tumor-associated calcium signal transducer 2 /FL=gb:NM_002353.1 J04152 tumor-associated calcium signal transducer 2 TACSTD2 4070 NM_002353 0000320 // re-entry into mitotic cell cycle // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007595 // lactation // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010633 // negative regulation of epithelial cell migration // inferred from sequence or structural similarity /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032026 // response to magnesium ion // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033601 // positive regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051497 // negative regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation /// 0060675 // ureteric bud morphogenesis // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0090191 // negative regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 1900025 // negative regulation of substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 1900028 // negative regulation of ruffle assembly // inferred from sequence or structural similarity /// 2000045 // regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 2000146 // negative regulation of cell motility // inferred from sequence or structural similarity /// 2000738 // positive regulation of stem cell differentiation // inferred from electronic annotation 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein serine/threonine kinase regulator activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation 168.25 253.97 6.90 0.00 0.00 -4.43
209822_s_at 209822_s_at L22431 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L22431.1 /DEF=Human very low density lipoprotein receptor, complete cds. /FEA=mRNA /PROD=very low density lipoprotein receptor /DB_XREF=gi:437386 /UG=Hs.73729 very low density lipoprotein receptor /FL=gb:D16493.1 gb:L22431.1 gb:NM_003383.1 L22431 very low density lipoprotein receptor VLDLR 7436 NM_001018056 /// NM_003383 /// XM_006716864 /// XM_006716865 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0007613 // memory // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0021517 // ventral spinal cord development // inferred from electronic annotation /// 0034436 // glycoprotein transport // inferred from direct assay /// 0034447 // very-low-density lipoprotein particle clearance // inferred from direct assay /// 0038026 // reelin-mediated signaling pathway // inferred from sequence or structural similarity /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 1900006 // positive regulation of dendrite development // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0005041 // low-density lipoprotein receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030229 // very-low-density lipoprotein particle receptor activity // inferred from direct assay /// 0034185 // apolipoprotein binding // inferred from direct assay /// 0034185 // apolipoprotein binding // inferred from sequence or structural similarity /// 0034189 // very-low-density lipoprotein particle binding // inferred from direct assay /// 0034437 // glycoprotein transporter activity // inferred from direct assay /// 0038025 // reelin receptor activity // inferred from sequence or structural similarity /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -57.28 54.94 -6.90 0.00 0.00 -4.43
204386_s_at 204386_s_at BF303597 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF303597 /FEA=EST /DB_XREF=gi:11250218 /DB_XREF=est:601886230F2 /CLONE=IMAGE:4120446 /UG=Hs.182695 hypothetical protein MGC3243 /FL=gb:BC000002.1 gb:NM_024026.1 BF303597 mitochondrial ribosomal protein L57 MRPL57 78988 NM_024026 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 133.50 409.02 6.90 0.00 0.00 -4.43
55872_at 55872_at AI493119 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI493119:qz49h07.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2030269 /clone_end=3' /gb=AI493119 /gi=4394122 /ug=Hs.158654 /len=456 AI493119 zinc finger protein 512B ZNF512B 57473 NM_020713 /// XM_005260226 /// XR_430305 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 172.25 139.38 6.89 0.00 0.00 -4.43
203753_at 203753_at NM_003199 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003199.1 /DEF=Homo sapiens transcription factor 4 (TCF4), mRNA. /FEA=mRNA /GEN=TCF4 /PROD=transcription factor 4, isoform b /DB_XREF=gi:4507398 /UG=Hs.326198 transcription factor 4 /FL=gb:M74719.1 gb:NM_003199.1 NM_003199 transcription factor 4 TCF4 6925 NM_001083962 /// NM_001243226 /// NM_001243227 /// NM_001243228 /// NM_001243230 /// NM_001243231 /// NM_001243232 /// NM_001243233 /// NM_001243234 /// NM_001243235 /// NM_001243236 /// NM_003199 /// XM_005266739 /// XM_005266741 /// XM_005266743 /// XM_005266744 /// XM_005266745 /// XM_005266746 /// XM_005266747 /// XM_005266749 /// XM_005266750 /// XM_005266752 /// XM_005266754 /// XM_005266755 /// XM_005266761 /// XM_006722529 /// XM_006722530 /// XM_006722531 /// XM_006722532 /// XM_006722533 /// XM_006722534 /// XM_006722535 /// XM_006722536 /// XM_006722537 /// XM_006722538 /// XM_006722539 /// XM_006722540 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0065004 // protein-DNA complex assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001011 // sequence-specific DNA binding RNA polymerase recruiting transcription factor activity // inferred from sequence or structural similarity /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from sequence or structural similarity /// 0001087 // TFIIB-class binding transcription factor activity // inferred from sequence or structural similarity /// 0001093 // TFIIB-class transcription factor binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity -107.32 345.59 -6.88 0.00 0.00 -4.43
210513_s_at 210513_s_at AF091352 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF091352.1 /DEF=Homo sapiens vascular permeability factor 148 mRNA, complete cds. /FEA=mRNA /PROD=vascular permeability factor 148 /DB_XREF=gi:5901560 /UG=Hs.73793 vascular endothelial growth factor /FL=gb:M32977.1 gb:AF022375.1 gb:NM_003376.1 gb:AB021221.1 gb:AF091352.1 AF091352 vascular endothelial growth factor A VEGFA 7422 NM_001025366 /// NM_001025367 /// NM_001025368 /// NM_001025369 /// NM_001025370 /// NM_001033756 /// NM_001171622 /// NM_001171623 /// NM_001171624 /// NM_001171625 /// NM_001171626 /// NM_001171627 /// NM_001171628 /// NM_001171629 /// NM_001171630 /// NM_001204384 /// NM_001204385 /// NM_001287044 /// NM_003376 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001525 // angiogenesis // inferred from direct assay /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // traceable author statement /// 0001666 // response to hypoxia // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001822 // kidney development // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001944 // vasculature development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0002052 // positive regulation of neuroblast proliferation // inferred from sequence or structural similarity /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0002092 // positive regulation of receptor internalization // inferred from direct assay /// 0002575 // basophil chemotaxis // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0002687 // positive regulation of leukocyte migration // traceable author statement /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003169 // coronary vein morphogenesis // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007498 // mesoderm development // inferred from sequence or structural similarity /// 0007595 // lactation // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008360 // regulation of cell shape // inferred from direct assay /// 0009409 // response to cold // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0016477 // cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from direct assay /// 0030225 // macrophage differentiation // inferred from direct assay /// 0030324 // lung development // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from sequence or structural similarity /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0031077 // post-embryonic camera-type eye development // inferred from sequence or structural similarity /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0032793 // positive regulation of CREB transcription factor activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0035148 // tube formation // inferred from direct assay /// 0035767 // endothelial cell chemotaxis // inferred from direct assay /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from direct assay /// 0036303 // lymph vessel morphogenesis // inferred from sequence or structural similarity /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from direct assay /// 0038091 // positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway // inferred from direct assay /// 0038190 // VEGF-activated neuropilin signaling pathway // inferred from sequence or structural similarity /// 0040007 // growth // inferred from sequence or structural similarity /// 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043069 // negative regulation of programmed cell death // inferred from electronic annotation /// 0043117 // positive regulation of vascular permeability // inferred from direct assay /// 0043129 // surfactant homeostasis // inferred from sequence or structural similarity /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0048255 // mRNA stabilization // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048469 // cell maturation // inferred from sequence or structural similarity /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from sequence or structural similarity /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // inferred from sequence or structural similarity /// 0048754 // branching morphogenesis of an epithelial tube // inferred from sequence or structural similarity /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0050679 // positive regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from direct assay /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // inferred from direct assay /// 0050930 // induction of positive chemotaxis // non-traceable author statement /// 0051272 // positive regulation of cellular component movement // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0060319 // primitive erythrocyte differentiation // inferred from sequence or structural similarity /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from sequence or structural similarity /// 0060754 // positive regulation of mast cell chemotaxis // inferred from direct assay /// 0060948 // cardiac vascular smooth muscle cell development // inferred from sequence or structural similarity /// 0060982 // coronary artery morphogenesis // inferred from sequence or structural similarity /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0061419 // positive regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement /// 0071542 // dopaminergic neuron differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 0090037 // positive regulation of protein kinase C signaling // inferred from direct assay /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0090259 // regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1900086 // positive regulation of peptidyl-tyrosine autophosphorylation // inferred from direct assay /// 1900745 // positive regulation of p38MAPK cascade // inferred from direct assay /// 1901492 // positive regulation of lymphangiogenesis // inferred from electronic annotation /// 1901727 // positive regulation of histone deacetylase activity // inferred from direct assay /// 1902336 // positive regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1902533 // positive regulation of intracellular signal transduction // inferred from direct assay /// 1902966 // positive regulation of protein localization to early endosome // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation 0001968 // fibronectin binding // inferred from direct assay /// 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005172 // vascular endothelial growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // inferred from mutant phenotype /// 0038191 // neuropilin binding // inferred from physical interaction /// 0042056 // chemoattractant activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043183 // vascular endothelial growth factor receptor 1 binding // inferred from physical interaction /// 0043184 // vascular endothelial growth factor receptor 2 binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048018 // receptor agonist activity // inferred from physical interaction /// 0050840 // extracellular matrix binding // inferred by curator -113.85 106.58 -6.86 0.00 0.00 -4.44
208370_s_at 208370_s_at NM_004414 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004414.2 /DEF=Homo sapiens Down syndrome critical region gene 1 (DSCR1), mRNA. /FEA=mRNA /GEN=DSCR1 /PROD=Down syndrome critical region protein 1 /DB_XREF=gi:7657042 /UG=Hs.184222 Down syndrome critical region gene 1 /FL=gb:U28833.2 gb:NM_004414.2 NM_004414 regulator of calcineurin 1 RCAN1 1827 NM_001285389 /// NM_001285391 /// NM_001285392 /// NM_001285393 /// NM_004414 /// NM_203417 /// NM_203418 /// XM_005260929 /// XM_005260930 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007417 // central nervous system development // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008015 // blood circulation // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0051151 // negative regulation of smooth muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction -186.22 219.74 -6.86 0.00 0.00 -4.44
219634_at 219634_at NM_018413 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018413.1 /DEF=Homo sapiens chondroitin 4-sulfotransferase (C4ST), mRNA. /FEA=mRNA /GEN=C4ST /PROD=chondroitin 4-sulfotransferase /DB_XREF=gi:8923757 /UG=Hs.287402 chondroitin 4-sulfotransferase /FL=gb:AB042326.1 gb:NM_018413.1 gb:AF239820.1 NM_018413 carbohydrate (chondroitin 4) sulfotransferase 11 CHST11 50515 NM_001173982 /// NM_018413 0002063 // chondrocyte development // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // inferred from direct assay /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0033037 // polysaccharide localization // inferred from electronic annotation /// 0036342 // post-anal tail morphogenesis // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048589 // developmental growth // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0001537 // N-acetylgalactosamine 4-O-sulfotransferase activity // inferred from direct assay /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047756 // chondroitin 4-sulfotransferase activity // inferred from direct assay /// 0050659 // N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity // inferred from electronic annotation -58.20 81.85 -6.86 0.00 0.00 -4.44
212288_at 212288_at AB011126 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011126.1 /DEF=Homo sapiens mRNA for KIAA0554 protein, partial cds. /FEA=mRNA /GEN=KIAA0554 /PROD=KIAA0554 protein /DB_XREF=gi:3043631 /UG=Hs.301763 KIAA0554 protein AB011126 formin binding protein 1 FNBP1 23048 NM_015033 /// XM_005251815 /// XM_005251816 /// XM_005251817 /// XM_005251818 /// XM_005251819 /// XM_005251820 /// XM_005251821 /// XM_005251822 /// XM_005251823 /// XM_005251824 /// XM_005251825 /// XM_005251826 /// XM_005251827 /// XM_005251828 /// XM_005251829 /// XM_005251830 /// XM_005251831 /// XM_005251832 /// XM_005251833 /// XM_005251834 /// XM_006717016 /// XM_006717017 0006412 // translation // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction -213.70 217.00 -6.86 0.00 0.00 -4.44
209744_x_at 209744_x_at AB056663 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB056663.2 /DEF=Homo sapiens mRNA for ubiquitin protein ligase Itch, complete cds. /FEA=mRNA /GEN=Itch /PROD=ubiquitin protein ligase Itch /DB_XREF=gi:13442821 /UG=Hs.98074 atrophin-1 interacting protein 4 /FL=gb:AB056663.2 AB056663 itchy E3 ubiquitin protein ligase ITCH 83737 NM_001257137 /// NM_001257138 /// NM_031483 /// XM_005260570 /// XM_006723881 /// XM_006723882 /// XR_244153 /// XR_430315 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0001558 // regulation of cell growth // non-traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002669 // positive regulation of T cell anergy // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0035519 // protein K29-linked ubiquitination // inferred from direct assay /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from sequence or structural similarity /// 0046642 // negative regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046718 // viral entry into host cell // traceable author statement /// 0050687 // negative regulation of defense response to virus // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from electronic annotation /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0090085 // regulation of protein deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0043021 // ribonucleoprotein complex binding // inferred from physical interaction /// 0045236 // CXCR chemokine receptor binding // inferred from physical interaction -124.43 193.66 -6.86 0.00 0.00 -4.44
213035_at 213035_at AI081194 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI081194 /FEA=EST /DB_XREF=gi:3417986 /DB_XREF=est:ox76a08.x1 /CLONE=IMAGE:1662230 /UG=Hs.32556 KIAA0379 protein AI081194 ankyrin repeat domain 28 ANKRD28 23243 NM_001195098 /// NM_001195099 /// NM_015199 /// XM_005264996 /// XM_005264997 /// XM_005264998 /// XM_006713074 /// XM_006713075 /// XM_006713076 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 60.52 64.59 6.85 0.00 0.00 -4.44
213038_at 213038_at AL031602 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031602 /DEF=Human DNA sequence from clone RP5-1174N9 on chromosome 1p34.1-35.3. Contains the gene for a novel protein with IBR domain, a (pseudo?) gene for a novel protein similar to MT1E (metallothionein 1E (functional)), ESTs, STSs, GSSs and two putative Cp... /FEA=mRNA_2 /DB_XREF=gi:6729581 /UG=Hs.64239 Human DNA sequence from clone RP5-1174N9 on chromosome 1p34.1-35.3. Contains the gene for a novel protein with IBR domain, a (pseudo?) gene for a novel protein similar to MT1E (metallothionein 1E (functional)), ESTs, STSs, GSSs and two putative CpG island AL031602 ring finger protein 19B RNF19B 127544 NM_001127361 /// NM_153341 /// XM_005270460 /// XM_006710356 /// XM_006710357 /// XM_006710358 0002376 // immune system process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042267 // natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0072643 // interferon-gamma secretion // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0044194 // cytolytic granule // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -74.80 110.22 -6.85 0.00 0.00 -4.44
212429_s_at 212429_s_at AW194657 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW194657 /FEA=EST /DB_XREF=gi:6473537 /DB_XREF=est:xb28b12.x1 /CLONE=IMAGE:2577599 /UG=Hs.75782 general transcription factor IIIC, polypeptide 2 (beta subunit, 110kD) AW194657 general transcription factor IIIC, polypeptide 2, beta 110kDa GTF3C2 2976 NM_001035521 /// NM_001521 /// XM_005264272 /// XM_005264273 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006383 // transcription from RNA polymerase III promoter // inferred from direct assay /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0042791 // 5S class rRNA transcription from RNA polymerase III type 1 promoter // inferred by curator /// 0042797 // tRNA transcription from RNA polymerase III promoter // inferred by curator 0000127 // transcription factor TFIIIC complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 74.90 156.38 6.85 0.00 0.00 -4.44
208873_s_at 208873_s_at BC000232 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000232.1 /DEF=Homo sapiens, Similar to deleted in polyposis 1, clone MGC:2267, mRNA, complete cds. /FEA=mRNA /PROD=Similar to deleted in polyposis 1 /DB_XREF=gi:12652946 /UG=Hs.178112 DNA segment, single copy probe LNS-CAILNS-CAII (deleted in polyposis /FL=gb:BC000232.1 BC000232 receptor accessory protein 5 REEP5 7905 NM_005669 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 89.55 170.47 6.85 0.00 0.00 -4.44
202541_at 202541_at BF589679 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF589679 /FEA=EST /DB_XREF=gi:11682003 /DB_XREF=est:naa08b05.x1 /CLONE=IMAGE:3253977 /UG=Hs.146401 small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating) /FL=gb:NM_004757.1 gb:U10117.1 BF589679 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 AIMP1 9255 NM_001142415 /// NM_001142416 /// NM_004757 0001525 // angiogenesis // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007267 // cell-cell signaling // inferred from direct assay /// 0009611 // response to wounding // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0050900 // leukocyte migration // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from direct assay /// 0030133 // transport vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000049 // tRNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay 69.35 78.05 6.83 0.00 0.00 -4.44
219485_s_at 219485_s_at NM_002814 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002814.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 (PSMD10), mRNA. /FEA=mRNA /GEN=PSMD10 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 10 /DB_XREF=gi:4506216 /UG=Hs.7756 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 /FL=gb:AB009619.1 gb:D83197.1 gb:NM_002814.1 NM_002814 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 PSMD10 5716 NM_002814 /// NM_170750 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031398 // positive regulation of protein ubiquitination // inferred from mutant phenotype /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043409 // negative regulation of MAPK cascade // inferred from mutant phenotype /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045737 // positive regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070682 // proteasome regulatory particle assembly // inferred from mutant phenotype /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // traceable author statement /// 0008540 // proteasome regulatory particle, base subcomplex // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction 187.90 386.93 6.82 0.00 0.00 -4.44
213932_x_at 213932_x_at AI923492 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI923492 /FEA=EST /DB_XREF=gi:5659456 /DB_XREF=est:wn86a02.x1 /CLONE=IMAGE:2452682 /UG=Hs.181244 major histocompatibility complex, class I, A AI923492 major histocompatibility complex, class I, A HLA-A 3105 NM_001242758 /// NM_002116 /// XM_005275331 /// XM_006725750 /// XM_006725751 /// XM_006725857 /// XM_006725858 /// XM_006725859 /// XM_006725946 /// XM_006726046 /// XM_006726047 /// XM_006726135 /// XM_006726136 /// XM_006726137 /// XR_430999 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0006955 // immune response // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016045 // detection of bacterium // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 2000568 // positive regulation of memory T cell activation // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005797 // Golgi medial cisterna // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070971 // endoplasmic reticulum exit site // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from direct assay /// 0030881 // beta-2-microglobulin binding // inferred from sequence or structural similarity /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0042608 // T cell receptor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046977 // TAP binding // inferred from direct assay -499.97 1632.74 -6.82 0.00 0.00 -4.44
201930_at 201930_at NM_005915 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005915.2 /DEF=Homo sapiens minichromosome maintenance deficient (mis5, S. pombe) 6 (MCM6), mRNA. /FEA=mRNA /GEN=MCM6 /PROD=minichromosome maintenance deficient (mis5, S.pombe) 6 /DB_XREF=gi:7427518 /UG=Hs.155462 minichromosome maintenance deficient (mis5, S. pombe) 6 /FL=gb:U46838.1 gb:D84557.1 gb:NM_005915.2 NM_005915 minichromosome maintenance complex component 6 MCM6 4175 NM_005915 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // non-traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006268 // DNA unwinding involved in DNA replication // inferred from electronic annotation /// 0006270 // DNA replication initiation // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0015979 // photosynthesis // inferred from electronic annotation /// 0015995 // chlorophyll biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0042555 // MCM complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016851 // magnesium chelatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 143.53 204.91 6.82 0.00 0.00 -4.44
200628_s_at 200628_s_at M61715 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M61715.1 /DEF=Human tryptophanyl-tRNA synthetase (WRS) mRNA, complete cds. /FEA=mRNA /GEN=WARS /PROD=transfer RNA-Trp synthetase /DB_XREF=gi:340367 /UG=Hs.82030 tryptophanyl-tRNA synthetase /FL=gb:M77804.1 gb:M61715.1 gb:NM_004184.2 M61715 tryptophanyl-tRNA synthetase WARS 7453 NM_004184 /// NM_173701 /// NM_213645 /// NM_213646 /// XM_005268044 /// XM_006720248 /// XM_006720249 0001525 // angiogenesis // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006436 // tryptophanyl-tRNA aminoacylation // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045765 // regulation of angiogenesis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // non-traceable author statement /// 0004830 // tryptophan-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -122.43 404.31 -6.82 0.00 0.00 -4.44
212192_at 212192_at AI718937 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI718937 /FEA=EST /DB_XREF=gi:5036193 /DB_XREF=est:as50b04.x1 /CLONE=IMAGE:2320591 /UG=Hs.109438 Homo sapiens clone 24775 mRNA sequence AI718937 potassium channel tetramerization domain containing 12 KCTD12 115207 NM_138444 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 415.00 665.45 6.81 0.00 0.00 -4.44
200901_s_at 200901_s_at NM_002355 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002355.2 /DEF=Homo sapiens mannose-6-phosphate receptor (cation dependent) (M6PR), mRNA. /FEA=mRNA /GEN=M6PR /PROD=cation-dependent mannose-6-phosphate receptorprecursor /DB_XREF=gi:10947032 /UG=Hs.75709 mannose-6-phosphate receptor (cation dependent) /FL=gb:NM_002355.2 gb:M16985.1 NM_002355 mannose-6-phosphate receptor (cation dependent) /// polyhomeotic homolog 1 (Drosophila) M6PR /// PHC1 1911 /// 4074 NM_001207024 /// NM_002355 /// NM_004426 /// XM_005253334 /// XM_005253336 /// XM_005253376 0006810 // transport // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // traceable author statement /// 0015761 // mannose transport // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from direct assay /// 0071300 // cellular response to retinoic acid // inferred from electronic annotation 0000323 // lytic vacuole // inferred from electronic annotation /// 0001739 // sex chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005770 // late endosome // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from direct assay /// 0035102 // PRC1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015578 // mannose transmembrane transporter activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 83.22 171.86 6.80 0.00 0.00 -4.44
206052_s_at 206052_s_at NM_006527 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006527.1 /DEF=Homo sapiens Hairpin binding protein, histone (HBP), mRNA. /FEA=mRNA /GEN=HBP /PROD=Hairpin binding protein, histone /DB_XREF=gi:5729861 /UG=Hs.75257 stem-loop (histone) binding protein /FL=gb:U75679.1 gb:NM_006527.1 NM_006527 stem-loop binding protein SLBP 7884 NM_006527 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006398 // histone mRNA 3'-end processing // inferred from sequence or structural similarity /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008334 // histone mRNA metabolic process // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0033260 // nuclear cell cycle DNA replication // inferred from mutant phenotype /// 0051028 // mRNA transport // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // traceable author statement /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0071207 // histone pre-mRNA stem-loop binding // inferred from sequence or structural similarity /// 0071208 // histone pre-mRNA DCP binding // inferred from sequence or structural similarity 101.60 235.78 6.80 0.00 0.00 -4.44
201555_at 201555_at NM_002388 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002388.2 /DEF=Homo sapiens minichromosome maintenance deficient (S. cerevisiae) 3 (MCM3), mRNA. /FEA=mRNA /GEN=MCM3 /PROD=minichromosome maintenance deficient (S.cerevisiae) 3 /DB_XREF=gi:6631094 /UG=Hs.179565 minichromosome maintenance deficient (S. cerevisiae) 3 /FL=gb:BC001626.1 gb:NM_002388.2 gb:D38073.1 NM_002388 minichromosome maintenance complex component 3 MCM3 4172 NM_001270472 /// NM_002388 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006270 // DNA replication initiation // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0015979 // photosynthesis // inferred from electronic annotation /// 0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005658 // alpha DNA polymerase:primase complex // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0042555 // MCM complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016851 // magnesium chelatase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 116.12 178.71 6.80 0.00 0.00 -4.44
200970_s_at 200970_s_at AL136807 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136807.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434L1621 (from clone DKFZp434L1621); complete cds. /FEA=mRNA /GEN=DKFZp434L1621 /PROD=hypothetical protein /DB_XREF=gi:12053124 /UG=Hs.76698 stress-associated endoplasmic reticulum protein 1; ribosome associated membrane protein 4 /FL=gb:AL136807.1 gb:AF136975.1 gb:AB022427.1 gb:NM_014445.1 AL136807 stress-associated endoplasmic reticulum protein 1 SERP1 27230 NM_014445 0001501 // skeletal system development // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007009 // plasma membrane organization // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 130.20 316.12 6.78 0.00 0.00 -4.44
210002_at 210002_at D87811 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D87811.1 /DEF=Homo sapiens mRNA for GATA-6, complete cds. /FEA=mRNA /PROD=GATA-6 /DB_XREF=gi:2506075 /UG=Hs.50924 GATA-binding protein 6 /FL=gb:U66075.1 gb:D87811.1 gb:NM_005257.1 D87811 GATA binding protein 6 GATA6 2627 NM_005257 /// XM_005258248 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // inferred from mutant phenotype /// 0003309 // type B pancreatic cell differentiation // inferred from electronic annotation /// 0003310 // pancreatic A cell differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007493 // endodermal cell fate determination // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008584 // male gonad development // inferred from expression pattern /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0014898 // cardiac muscle hypertrophy in response to stress // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0031016 // pancreas development // inferred from electronic annotation /// 0032911 // negative regulation of transforming growth factor beta1 production // inferred from mutant phenotype /// 0032912 // negative regulation of transforming growth factor beta2 production // inferred from mutant phenotype /// 0035239 // tube morphogenesis // inferred from electronic annotation /// 0035987 // endodermal cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048645 // organ formation // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // inferred from mutant phenotype /// 0051891 // positive regulation of cardioblast differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060486 // Clara cell differentiation // inferred from electronic annotation /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // inferred from direct assay /// 0060947 // cardiac vascular smooth muscle cell differentiation // inferred from mutant phenotype /// 0070848 // response to growth factor // inferred from direct assay /// 0071158 // positive regulation of cell cycle arrest // inferred from direct assay /// 0071371 // cellular response to gonadotropin stimulus // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071773 // cellular response to BMP stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -89.17 92.81 -6.77 0.00 0.00 -4.44
206976_s_at 206976_s_at NM_006644 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006644.1 /DEF=Homo sapiens heat shock 105kD (HSP105B), mRNA. /FEA=mRNA /GEN=HSP105B /PROD=heat shock 105kD /DB_XREF=gi:5729878 /UG=Hs.36927 heat shock 105kD /FL=gb:AB003333.1 gb:NM_006644.1 NM_006644 heat shock 105kDa/110kDa protein 1 HSPH1 10808 NM_001286503 /// NM_001286504 /// NM_001286505 /// NM_006644 /// XM_005266236 /// XM_006719757 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0045345 // positive regulation of MHC class I biosynthetic process // traceable author statement /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051135 // positive regulation of NK T cell activation // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // inferred from electronic annotation 184.22 295.44 6.76 0.00 0.00 -4.44
212783_at 212783_at AI538172 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI538172 /FEA=EST /DB_XREF=gi:4452307 /DB_XREF=est:ti75f08.x1 /CLONE=IMAGE:2137863 /UG=Hs.91065 hypothetical protein DKFZp761B2423 AI538172 retinoblastoma binding protein 6 RBBP6 5930 NM_006910 /// NM_018703 /// NM_032626 /// XM_005255461 /// XM_005255462 0001701 // in utero embryonic development // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0061053 // somite development // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -69.58 131.01 -6.76 0.00 0.00 -4.44
213500_at 213500_at AI307760 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI307760 /FEA=EST /DB_XREF=gi:4002364 /DB_XREF=est:tb24g09.x1 /CLONE=IMAGE:2055328 /UG=Hs.14074 Homo sapiens clone 24627 mRNA sequence AI307760 64.05 41.88 6.75 0.00 0.00 -4.44
205097_at 205097_at AI025519 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI025519 /FEA=EST /DB_XREF=gi:3241132 /DB_XREF=est:ov75c04.x1 /CLONE=IMAGE:1643142 /UG=Hs.29981 solute carrier family 26 (sulfate transporter), member 2 /FL=gb:NM_000112.1 gb:U14528.1 AI025519 solute carrier family 26 (anion exchanger), member 2 SLC26A2 1836 NM_000112 0001503 // ossification // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0008272 // sulfate transport // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0050428 // 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 1902358 // sulfate transmembrane transport // inferred from electronic annotation /// 1902358 // sulfate transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation /// 0015116 // sulfate transmembrane transporter activity // traceable author statement 85.00 97.28 6.75 0.00 0.00 -4.44
200953_s_at 200953_s_at NM_001759 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001759.1 /DEF=Homo sapiens cyclin D2 (CCND2), mRNA. /FEA=mRNA /GEN=CCND2 /PROD=cyclin D2 /DB_XREF=gi:4502616 /UG=Hs.75586 cyclin D2 /FL=gb:M90813.1 gb:D13639.1 gb:NM_001759.1 NM_001759 cyclin D2 CCND2 894 NM_001759 /// XM_005253813 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from direct assay /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction 107.63 141.44 6.74 0.00 0.00 -4.44
212365_at 212365_at BF215996 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF215996 /FEA=EST /DB_XREF=gi:11109582 /DB_XREF=est:601881549F1 /CLONE=IMAGE:4093740 /UG=Hs.121576 Homo sapiens cDNA FLJ20153 fis, clone COL08656, highly similar to AJ001381 Homo sapiens incomplete cDNA for a mutated allele BF215996 myosin IB MYO1B 4430 NM_001130158 /// NM_001161819 /// NM_012223 /// XM_005246569 /// XM_005246572 /// XM_005246575 /// XM_005246577 /// XM_006712536 /// XM_006712537 0006892 // post-Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0007015 // actin filament organization // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from sequence or structural similarity /// 0030048 // actin filament-based movement // inferred from sequence or structural similarity /// 0051017 // actin filament bundle assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from direct assay /// 0005884 // actin filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005903 // brush border // inferred from sequence or structural similarity /// 0010008 // endosome membrane // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0030175 // filopodium // inferred from sequence or structural similarity /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from sequence or structural similarity 0000146 // microfilament motor activity // inferred from mutant phenotype /// 0000146 // microfilament motor activity // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from sequence or structural similarity /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from mutant phenotype -110.43 212.46 -6.73 0.00 0.00 -4.44
212170_at 212170_at BF447705 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF447705 /FEA=EST /DB_XREF=gi:11512843 /DB_XREF=est:7q94d07.x1 /CLONE=IMAGE:3706021 /UG=Hs.180895 putative brain nuclearly-targeted protein BF447705 RNA binding motif protein 12 RBM12 10137 NM_001198838 /// NM_001198840 /// NM_006047 /// NM_152838 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 56.88 35.69 6.72 0.00 0.00 -4.44
214051_at 214051_at BF677486 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF677486 /FEA=EST /DB_XREF=gi:11951381 /DB_XREF=est:602085745F1 /CLONE=IMAGE:4249834 /UG=Hs.56145 thymosin, beta, identified in neuroblastoma cells BF677486 thymosin beta 15a /// thymosin beta 15B TMSB15A /// TMSB15B 11013 /// 286527 NM_021992 /// NM_194324 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0042989 // sequestering of actin monomers // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 78.20 144.35 6.72 0.00 0.00 -4.44
209285_s_at 209285_s_at N38985 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N38985 /FEA=EST /DB_XREF=gi:1162192 /DB_XREF=est:yv21f02.s1 /CLONE=IMAGE:243387 /UG=Hs.23440 KIAA1105 protein /FL=gb:AF180425.2 N38985 family with sequence similarity 208, member A FAM208A 23272 NM_001112736 /// NM_015224 /// XM_005264999 /// XM_006713077 /// XM_006713078 0044822 // poly(A) RNA binding // inferred from direct assay 57.23 52.29 6.72 0.00 0.00 -4.44
212909_at 212909_at AL567376 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL567376 /FEA=EST /DB_XREF=gi:12920672 /DB_XREF=est:AL567376 /CLONE=CS0DF024YO04 (3 prime) /UG=Hs.85339 G protein-coupled receptor 39 AL567376 LY6/PLAUR domain containing 1 LYPD1 116372 NM_001077427 /// NM_144586 /// XM_005263583 /// XM_005263584 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation 233.65 358.57 6.71 0.00 0.00 -4.44
218512_at 218512_at NM_018256 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018256.1 /DEF=Homo sapiens hypothetical protein FLJ10881 (FLJ10881), mRNA. /FEA=mRNA /GEN=FLJ10881 /PROD=hypothetical protein FLJ10881 /DB_XREF=gi:8922736 /UG=Hs.73291 hypothetical protein FLJ10881 /FL=gb:AF242546.1 gb:NM_018256.1 NM_018256 WD repeat domain 12 WDR12 55759 NM_018256 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from mutant phenotype /// 0000466 // maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from mutant phenotype /// 0006364 // rRNA processing // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042273 // ribosomal large subunit biogenesis // inferred by curator 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0030687 // preribosome, large subunit precursor // inferred from direct assay /// 0070545 // PeBoW complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0043021 // ribonucleoprotein complex binding // inferred from electronic annotation 84.68 264.91 6.71 0.00 0.00 -4.44
202021_x_at 202021_x_at AF083441 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF083441.1 /DEF=Homo sapiens SUI1 isolog mRNA, complete cds. /FEA=mRNA /PROD=SUI1 isolog /DB_XREF=gi:5813822 /UG=Hs.150580 putative translation initiation factor /FL=gb:BC005118.1 gb:AF100737.1 gb:L26247.1 gb:NM_005801.1 gb:AF083441.1 AF083441 eukaryotic translation initiation factor 1 EIF1 10209 NM_005801 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // traceable author statement /// 0006950 // response to stress // non-traceable author statement /// 0009048 // dosage compensation by inactivation of X chromosome // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement 0003743 // translation initiation factor activity // non-traceable author statement /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -903.92 2204.24 -6.70 0.00 0.00 -4.44
202129_s_at 202129_s_at AW006290 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW006290 /FEA=EST /DB_XREF=gi:5855068 /DB_XREF=est:wq69f11.x1 /CLONE=IMAGE:2476557 /UG=Hs.209061 sudD (suppressor of bimD6, Aspergillus nidulans) homolog /FL=gb:AF013591.1 gb:NM_003831.1 AW006290 RIO kinase 3 RIOK3 8780 NM_003831 /// NM_145906 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007059 // chromosome segregation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation -122.55 155.55 -6.70 0.00 0.00 -4.44
212987_at 212987_at AL031178 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031178 /DEF=Human DNA sequence from clone 341E18 on chromosome 6p11.2-12.3. Contains a SerineThreonine Protein Kinase gene (presumptive isolog of a Rat gene) and a novel alternatively spliced gene. Contains a putative CpG island, ESTs and GSSs /FEA=mRNA_2 /DB_XREF=gi:3550040 /UG=Hs.11050 F-box only protein 9 AL031178 F-box protein 9 FBXO9 26268 NM_012347 /// NM_033480 /// NM_033481 /// XM_005248995 /// XM_005248996 /// XM_006715050 /// XM_006715051 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // non-traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0032006 // regulation of TOR signaling // inferred from mutant phenotype 0000151 // ubiquitin ligase complex // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 91.03 164.61 6.70 0.00 0.00 -4.44
221765_at 221765_at AI378044 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI378044 /FEA=EST /DB_XREF=gi:4187897 /DB_XREF=est:te67h09.x1 /CLONE=IMAGE:2091809 /UG=Hs.23703 ESTs AI378044 UDP-glucose ceramide glucosyltransferase UGCG 7357 NM_003358 /// XM_005252186 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006679 // glucosylceramide biosynthetic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0006688 // glycosphingolipid biosynthetic process // traceable author statement /// 0008544 // epidermis development // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0008120 // ceramide glucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -113.78 143.26 -6.70 0.00 0.00 -4.44
221825_at 221825_at AU151793 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU151793 /FEA=EST /DB_XREF=gi:11013314 /DB_XREF=est:AU151793 /CLONE=NT2RP2006115 /UG=Hs.157078 Homo sapiens cDNA FLJ12793 fis, clone NT2RP2002033 AU151793 angel homolog 2 (Drosophila) ANGEL2 90806 NM_144567 /// XM_005273344 /// XM_005273345 /// XM_005273346 /// XM_005273347 /// XM_005273349 /// XM_006711616 /// XR_247045 64.20 88.30 6.69 0.00 0.00 -4.44
201662_s_at 201662_s_at D89053 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D89053.1 /DEF=Homo sapiens mRNA for Acyl-CoA synthetase 3, complete cds. /FEA=mRNA /PROD=Acyl-CoA synthetase 3 /DB_XREF=gi:4165017 /UG=Hs.268012 fatty-acid-Coenzyme A ligase, long-chain 3 /FL=gb:NM_004457.2 gb:D89053.1 gb:AF116690.1 D89053 acyl-CoA synthetase long-chain family member 3 ACSL3 2181 NM_004457 /// NM_203372 0001676 // long-chain fatty acid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0034379 // very-low-density lipoprotein particle assembly // inferred from mutant phenotype /// 0042998 // positive regulation of Golgi to plasma membrane protein transport // inferred from mutant phenotype /// 0044539 // long-chain fatty acid import // inferred from direct assay /// 0051047 // positive regulation of secretion // inferred from mutant phenotype /// 2001247 // positive regulation of phosphatidylcholine biosynthetic process // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction -252.15 356.73 -6.69 0.00 0.00 -4.44
201637_s_at 201637_s_at NM_005087 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005087.1 /DEF=Homo sapiens fragile X mental retardation, autosomal homolog 1 (FXR1), mRNA. /FEA=mRNA /GEN=FXR1 /PROD=fragile X mental retardation-related protein 1 /DB_XREF=gi:4826735 /UG=Hs.82712 fragile X mental retardation, autosomal homolog 1 /FL=gb:NM_005087.1 gb:U25165.1 NM_005087 fragile X mental retardation, autosomal homolog 1 FXR1 8087 NM_001013438 /// NM_001013439 /// NM_005087 /// XM_005247813 /// XM_005247814 /// XM_005247815 /// XM_005247816 /// XM_006713775 0006915 // apoptotic process // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005844 // polysome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043034 // costamere // inferred from electronic annotation 0002151 // G-quadruplex RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -170.30 431.10 -6.69 0.00 0.00 -4.44
217870_s_at 217870_s_at NM_016308 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016308.1 /DEF=Homo sapiens UMP-CMP kinase (LOC51727), mRNA. /FEA=mRNA /GEN=LOC51727 /PROD=UMP-CMP kinase /DB_XREF=gi:7706496 /UG=Hs.11463 UMP-CMP kinase /FL=gb:AF259961.1 gb:AF110643.1 gb:AF112216.1 gb:AF070416.1 gb:NM_016308.1 NM_016308 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic CMPK1 51727 NM_001136140 /// NM_016308 /// NR_046394 /// NR_046395 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006165 // nucleoside diphosphate phosphorylation // inferred from direct assay /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006222 // UMP biosynthetic process // traceable author statement /// 0006225 // UDP biosynthetic process // inferred from electronic annotation /// 0006227 // dUDP biosynthetic process // inferred from electronic annotation /// 0006240 // dCDP biosynthetic process // inferred from electronic annotation /// 0009142 // nucleoside triphosphate biosynthetic process // inferred from direct assay /// 0009220 // pyrimidine ribonucleotide biosynthetic process // traceable author statement /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018963 // phthalate metabolic process // inferred from electronic annotation /// 0022602 // ovulation cycle process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046705 // CDP biosynthetic process // inferred from electronic annotation /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // non-traceable author statement /// 0005763 // mitochondrial small ribosomal subunit // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0004127 // cytidylate kinase activity // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from direct assay /// 0004849 // uridine kinase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0009041 // uridylate kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase-containing compound kinase activity // inferred from electronic annotation /// 0033862 // UMP kinase activity // inferred from electronic annotation 111.30 421.40 6.68 0.00 0.00 -4.44
213552_at 213552_at W87398 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W87398 /FEA=EST /DB_XREF=gi:1401453 /DB_XREF=est:zh66h10.s1 /CLONE=IMAGE:417091 /UG=Hs.183006 KIAA0836 protein W87398 glucuronic acid epimerase GLCE 26035 NM_015554 /// XM_005254298 /// XM_005254299 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from direct assay /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from sequence or structural similarity /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030210 // heparin biosynthetic process // inferred from electronic annotation /// 0030210 // heparin biosynthetic process // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016853 // isomerase activity // inferred from electronic annotation /// 0016857 // racemase and epimerase activity, acting on carbohydrates and derivatives // inferred from sequence or structural similarity /// 0047464 // heparosan-N-sulfate-glucuronate 5-epimerase activity // inferred from mutant phenotype /// 0050379 // UDP-glucuronate 5'-epimerase activity // inferred from direct assay 119.65 179.30 6.68 0.00 0.00 -4.44
208848_at 208848_at M30471 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M30471.1 /DEF=Human class III alcohol dehydrogenase (ADH5) chi subunit mRNA, complete cds. /FEA=mRNA /GEN=ADH5 /PROD=alcohol dehydrogenase 3 /DB_XREF=gi:178133 /UG=Hs.78989 alcohol dehydrogenase 5 (class III), chi polypeptide /FL=gb:NM_000671.2 gb:M29872.1 gb:M30471.1 M30471 alcohol dehydrogenase 5 (class III), chi polypeptide ADH5 128 NM_000671 0001523 // retinoid metabolic process // inferred from electronic annotation /// 0003016 // respiratory system process // inferred from electronic annotation /// 0006068 // ethanol catabolic process // inferred from electronic annotation /// 0006069 // ethanol oxidation // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0018119 // peptidyl-cysteine S-nitrosylation // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0045777 // positive regulation of blood pressure // inferred from electronic annotation /// 0046294 // formaldehyde catabolic process // inferred from electronic annotation /// 0051409 // response to nitrosative stress // inferred from electronic annotation /// 0051775 // response to redox state // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004022 // alcohol dehydrogenase (NAD) activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018467 // formaldehyde dehydrogenase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051903 // S-(hydroxymethyl)glutathione dehydrogenase activity // traceable author statement 70.40 122.92 6.68 0.00 0.00 -4.44
203288_at 203288_at NM_014686 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014686.1 /DEF=Homo sapiens KIAA0355 gene product (KIAA0355), mRNA. /FEA=mRNA /GEN=KIAA0355 /PROD=KIAA0355 gene product /DB_XREF=gi:7662075 /UG=Hs.186840 KIAA0355 gene product /FL=gb:AB002353.1 gb:NM_014686.1 NM_014686 KIAA0355 KIAA0355 9710 NM_014686 /// XM_005259444 93.90 190.78 6.67 0.00 0.00 -4.44
212130_x_at 212130_x_at AL537707 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL537707 /FEA=EST /DB_XREF=gi:12801200 /DB_XREF=est:AL537707 /CLONE=CS0DF026YP17 (5 prime) /UG=Hs.150580 putative translation initiation factor AL537707 eukaryotic translation initiation factor 1 EIF1 10209 NM_005801 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // traceable author statement /// 0006950 // response to stress // non-traceable author statement /// 0009048 // dosage compensation by inactivation of X chromosome // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement 0003743 // translation initiation factor activity // non-traceable author statement /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -871.68 2309.16 -6.67 0.00 0.00 -4.44
216061_x_at 216061_x_at AU150748 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU150748 /FEA=EST /DB_XREF=gi:11012269 /DB_XREF=est:AU150748 /CLONE=NT2RP2003517 /UG=Hs.1976 platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) AU150748 platelet-derived growth factor beta polypeptide PDGFB 5155 NM_002608 /// NM_033016 0001568 // blood vessel development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0002548 // monocyte chemotaxis // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0003104 // positive regulation of glomerular filtration // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006929 // substrate-dependent cell migration // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009611 // response to wounding // inferred from direct assay /// 0009611 // response to wounding // non-traceable author statement /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010512 // negative regulation of phosphatidylinositol biosynthetic process // inferred from direct assay /// 0010544 // negative regulation of platelet activation // inferred from direct assay /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // inferred from direct assay /// 0016049 // cell growth // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030031 // cell projection assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from mutant phenotype /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0032148 // activation of protein kinase B activity // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0035793 // positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway // inferred from direct assay /// 0038001 // paracrine signaling // inferred from sequence or structural similarity /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from mutant phenotype /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // inferred from direct assay /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045737 // positive regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from direct assay /// 0050921 // positive regulation of chemotaxis // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from direct assay /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071363 // cellular response to growth factor stimulus // inferred from direct assay /// 0071506 // cellular response to mycophenolic acid // inferred from sequence or structural similarity /// 0072126 // positive regulation of glomerular mesangial cell proliferation // inferred from direct assay /// 0072255 // metanephric glomerular mesangial cell development // inferred from sequence or structural similarity /// 0072262 // metanephric glomerular mesangial cell proliferation involved in metanephros development // inferred from electronic annotation /// 0072264 // metanephric glomerular endothelium development // inferred from electronic annotation /// 0072593 // reactive oxygen species metabolic process // inferred from mutant phenotype /// 0090280 // positive regulation of calcium ion import // inferred from direct assay /// 1900127 // positive regulation of hyaluronan biosynthetic process // inferred from direct assay /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from direct assay /// 2000573 // positive regulation of DNA biosynthetic process // inferred from direct assay /// 2000591 // positive regulation of metanephric mesenchymal cell migration // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement 0005161 // platelet-derived growth factor receptor binding // inferred from direct assay /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005161 // platelet-derived growth factor receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0008083 // growth factor activity // inferred from direct assay /// 0016176 // superoxide-generating NADPH oxidase activator activity // inferred from direct assay /// 0042056 // chemoattractant activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0048407 // platelet-derived growth factor binding // inferred from physical interaction 102.05 167.45 6.67 0.00 0.00 -4.44
213573_at 213573_at AA861608 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA861608 /FEA=EST /DB_XREF=gi:2953748 /DB_XREF=est:ak34e01.s1 /CLONE=IMAGE:1407864 /UG=Hs.180446 karyopherin (importin) beta 1 AA861608 karyopherin (importin) beta 1 KPNB1 3837 NM_001276453 /// NM_002265 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006610 // ribosomal protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071782 // endoplasmic reticulum tubular network // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 93.70 182.85 6.67 0.00 0.00 -4.44
200058_s_at 200058_s_at BC001417 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001417.1 /DEF=Homo sapiens, Similar to U5 snRNP-specific protein, 200 kDa (DEXH RNA helicase family), clone MGC:2580, mRNA, complete cds. /FEA=mRNA /PROD=Similar to U5 snRNP-specific protein, 200 kDa(DEXH RNA helicase family) /DB_XREF=gi:12655128 /UG=Hs.246112 KIAA0788 protein /FL=gb:BC001417.1 gb:AF119874.1 BC001417 U5 small nuclear ribonucleoprotein 200 kDa helicase-like /// small nuclear ribonucleoprotein 200kDa (U5) LOC101929240 /// SNRNP200 23020 /// 101929240 NM_014014 /// XR_243770 /// XR_253745 /// XR_424859 0000354 // cis assembly of pre-catalytic spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005682 // U5 snRNP // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 85.20 327.65 6.66 0.00 0.00 -4.44
209651_at 209651_at BC001830 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001830.1 /DEF=Homo sapiens, Similar to transforming growth factor beta 1 induced transcript 1, clone MGC:4078, mRNA, complete cds. /FEA=mRNA /PROD=Similar to transforming growth factor beta 1induced transcript 1 /DB_XREF=gi:12804778 /UG=Hs.25511 transforming growth factor beta 1 induced transcript 1 /FL=gb:BC001830.1 gb:AF116343.1 gb:NM_015927.1 BC001830 transforming growth factor beta 1 induced transcript 1 TGFB1I1 7041 NM_001042454 /// NM_001164719 /// NM_015927 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009408 // response to heat // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0030579 // ubiquitin-dependent SMAD protein catabolic process // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048495 // Roundabout binding // inferred from physical interaction /// 0050681 // androgen receptor binding // inferred from physical interaction /// 0050681 // androgen receptor binding // non-traceable author statement /// 0070411 // I-SMAD binding // inferred from physical interaction 96.85 325.75 6.65 0.00 0.00 -4.44
218042_at 218042_at NM_016129 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016129.1 /DEF=Homo sapiens COP9 complex subunit 4 (LOC51138), mRNA. /FEA=mRNA /GEN=LOC51138 /PROD=COP9 complex subunit 4 /DB_XREF=gi:7705844 /UG=Hs.6671 COP9 complex subunit 4 /FL=gb:BC004302.1 gb:AF100757.1 gb:NM_016129.1 NM_016129 COP9 signalosome subunit 4 COPS4 51138 NM_001258006 /// NM_016129 0000338 // protein deneddylation // inferred from mutant phenotype /// 0010388 // cullin deneddylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 119.90 351.52 6.65 0.00 0.00 -4.44
209409_at 209409_at D86962 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D86962.1 /DEF=Human mRNA for KIAA0207 gene, complete cds. /FEA=mRNA /GEN=KIAA0207 /DB_XREF=gi:1503997 /UG=Hs.81875 growth factor receptor-bound protein 10 /FL=gb:D86962.1 gb:AF000017.1 D86962 growth factor receptor-bound protein 10 GRB10 2887 NM_001001549 /// NM_001001550 /// NM_001001555 /// NM_005311 /// XM_005271760 /// XM_005271761 /// XM_005271765 /// XM_005271766 /// XM_005271767 /// XM_006715703 /// XM_006715704 /// XM_006715705 0007165 // signal transduction // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from direct assay /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0032868 // response to insulin // inferred from sequence or structural similarity /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from sequence or structural similarity /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from sequence or structural similarity /// 0046325 // negative regulation of glucose import // inferred from sequence or structural similarity /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction -236.35 692.32 -6.64 0.00 0.00 -4.44
212457_at 212457_at AL161985 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL161985.1 /DEF=Homo sapiens mRNA; cDNA DKFZp761J1810 (from clone DKFZp761J1810). /FEA=mRNA /DB_XREF=gi:7328121 /UG=Hs.274184 transcription factor binding to IGHM enhancer 3 AL161985 transcription factor binding to IGHM enhancer 3 TFE3 7030 NM_001282142 /// NM_006521 /// XM_006724549 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006959 // humoral immune response // inferred from sequence or structural similarity /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0044212 // transcription regulatory region DNA binding // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from electronic annotation -66.38 158.84 -6.64 0.00 0.00 -4.44
208654_s_at 208654_s_at BF669455 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF669455 /FEA=EST /DB_XREF=gi:11943350 /DB_XREF=est:602120159F1 /CLONE=IMAGE:4277366 /UG=Hs.43910 CD164 antigen, sialomucin /FL=gb:AF299341.1 gb:AF299343.1 gb:AF263279.1 BF669455 CD164 molecule, sialomucin CD164 8763 NM_001142401 /// NM_001142402 /// NM_001142403 /// NM_001142404 /// NM_006016 0006955 // immune response // traceable author statement /// 0007155 // cell adhesion // inferred from direct assay /// 0007157 // heterophilic cell-cell adhesion // inferred from direct assay /// 0007162 // negative regulation of cell adhesion // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0007517 // muscle organ development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // non-traceable author statement /// 0030097 // hemopoiesis // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 200.20 371.95 6.63 0.00 0.00 -4.44
213629_x_at 213629_x_at BF246115 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF246115 /FEA=EST /DB_XREF=gi:11160133 /DB_XREF=est:601854068F1 /CLONE=IMAGE:4073921 /UG=Hs.8765 RNA helicase-related protein BF246115 metallothionein 1F MT1F 4494 NM_005949 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005507 // copper ion binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046870 // cadmium ion binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -179.45 313.90 -6.63 0.00 0.00 -4.44
203438_at 203438_at AI435828 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI435828 /FEA=EST /DB_XREF=gi:4305913 /DB_XREF=est:th79e05.x1 /CLONE=IMAGE:2124896 /UG=Hs.155223 stanniocalcin 2 /FL=gb:BC000658.1 gb:AF055460.1 gb:AB012664.1 gb:AF098462.1 gb:AF031036.1 gb:NM_003714.1 AI435828 stanniocalcin 2 STC2 8614 NM_003714 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007584 // response to nutrient // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 2001256 // regulation of store-operated calcium entry // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -147.40 120.05 -6.62 0.00 0.00 -4.44
209034_at 209034_at AF279899 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF279899.1 /DEF=Homo sapiens PNAS-145 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-145 /DB_XREF=gi:12751123 /UG=Hs.75969 proline-rich protein with nuclear targeting signal /FL=gb:AF279899.1 gb:U03105.1 gb:NM_006813.1 AF279899 proline-rich nuclear receptor coactivator 1 PNRC1 10957 NM_006813 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -277.45 229.47 -6.61 0.00 0.00 -4.44
200769_s_at 200769_s_at NM_005911 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005911.1 /DEF=Homo sapiens methionine adenosyltransferase II, alpha (MAT2A), mRNA. /FEA=mRNA /GEN=MAT2A /PROD=methionine adenosyltransferase II, alpha /DB_XREF=gi:5174528 /UG=Hs.77502 methionine adenosyltransferase II, alpha /FL=gb:BC001686.1 gb:BC001854.1 gb:NM_005911.1 NM_005911 methionine adenosyltransferase II, alpha MAT2A 4144 NM_005911 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from direct assay /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0032259 // methylation // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0048269 // methionine adenosyltransferase complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004478 // methionine adenosyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 161.48 155.84 6.61 0.00 0.00 -4.44
213554_s_at 213554_s_at AI928407 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI928407 /FEA=EST /DB_XREF=gi:5664371 /DB_XREF=est:wo96h09.x1 /CLONE=IMAGE:2463233 /UG=Hs.283690 hypothetical protein AI928407 CDV3 homolog (mouse) CDV3 55573 NM_001134422 /// NM_001134423 /// NM_001282762 /// NM_001282763 /// NM_001282764 /// NM_001282765 /// NM_017548 /// XM_005247588 /// XM_005247589 /// XM_005247590 /// XM_005247591 /// XM_005247592 /// XM_005247594 0008283 // cell proliferation // non-traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay -153.60 158.88 -6.60 0.00 0.00 -4.44
205055_at 205055_at NM_002208 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002208.3 /DEF=Homo sapiens integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) (ITGAE), mRNA. /FEA=mRNA /GEN=ITGAE /PROD=integrin, alpha E (antigen CD103, human mucosallymphocyte antigen 1; alpha polypeptide) /DB_XREF=gi:6007850 /UG=Hs.851 integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) /FL=gb:L25851.2 gb:NM_002208.3 NM_002208 integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) ITGAE 3682 NM_002208 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 122.62 321.79 6.60 0.00 0.00 -4.44
212623_at 212623_at AU153138 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU153138 /FEA=EST /DB_XREF=gi:11014659 /DB_XREF=est:AU153138 /CLONE=NT2RP3002507 /UG=Hs.174905 KIAA0033 protein AU153138 transmembrane protein 41B TMEM41B 440026 NM_001165030 /// NM_015012 /// NR_028491 0007399 // nervous system development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 87.80 153.60 6.60 0.00 0.00 -4.44
221568_s_at 221568_s_at AF090900 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF090900.1 /DEF=Homo sapiens clone HQ0189 PRO0189 mRNA, complete cds. /FEA=mRNA /PROD=PRO0189 /DB_XREF=gi:6690176 /UG=Hs.91393 Homo sapiens cDNA: FLJ21887 fis, clone HEP03135, highly similar to AF090900 Homo sapiens clone HQ0189 PRO0189 mRNA /FL=gb:AF090900.1 AF090900 lin-7 homolog C (C. elegans) LIN7C 55327 NM_018362 0002011 // morphogenesis of an epithelial sheet // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097025 // MPP7-DLG1-LIN7 complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0097016 // L27 domain binding // inferred from direct assay 78.25 72.83 6.59 0.00 0.00 -4.44
210479_s_at 210479_s_at L14611 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L14611.1 /DEF=Human transcription factor RZR-alpha mRNA, complete cds. /FEA=mRNA /PROD=transcription factor /DB_XREF=gi:348240 /UG=Hs.2156 RAR-related orphan receptor A /FL=gb:L14611.1 gb:NM_002943.1 gb:U04899.1 L14611 RAR-related orphan receptor A RORA 6095 NM_002943 /// NM_134260 /// NM_134261 /// NM_134262 /// XM_005254584 0001525 // angiogenesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006805 // xenobiotic metabolic process // inferred from sequence or structural similarity /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from mutant phenotype /// 0010906 // regulation of glucose metabolic process // inferred from sequence or structural similarity /// 0019218 // regulation of steroid metabolic process // inferred from sequence or structural similarity /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021930 // cerebellar granule cell precursor proliferation // inferred from sequence or structural similarity /// 0030522 // intracellular receptor signaling pathway // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0036315 // cellular response to sterol // inferred from direct assay /// 0036315 // cellular response to sterol // inferred from mutant phenotype /// 0042692 // muscle cell differentiation // inferred from mutant phenotype /// 0042753 // positive regulation of circadian rhythm // inferred from sequence or structural similarity /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046068 // cGMP metabolic process // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0060850 // regulation of transcription involved in cell fate commitment // inferred from sequence or structural similarity /// 0070328 // triglyceride homeostasis // inferred from mutant phenotype /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 0072539 // T-helper 17 cell differentiation // inferred from sequence or structural similarity /// 2000188 // regulation of cholesterol homeostasis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0001222 // transcription corepressor binding // inferred from physical interaction /// 0001223 // transcription coactivator binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008142 // oxysterol binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0098531 // direct ligand regulated sequence-specific DNA binding transcription factor activity // inferred from direct assay -69.00 65.28 -6.57 0.00 0.00 -4.44
218962_s_at 218962_s_at NM_022484 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022484.1 /DEF=Homo sapiens hypothetical protein FLJ13576 (FLJ13576), mRNA. /FEA=mRNA /GEN=FLJ13576 /PROD=hypothetical protein FLJ13576 /DB_XREF=gi:11968036 /UG=Hs.79353 hypothetical protein FLJ13576 /FL=gb:NM_022484.1 NM_022484 transmembrane protein 168 TMEM168 64418 NM_001287497 /// NM_022484 /// NR_109840 /// XM_005250527 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay 74.08 75.71 6.56 0.00 0.00 -4.44
200886_s_at 200886_s_at NM_002629 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002629.1 /DEF=Homo sapiens phosphoglycerate mutase 1 (brain) (PGAM1), mRNA. /FEA=mRNA /GEN=PGAM1 /PROD=phosphoglycerate mutase 1 (brain) /DB_XREF=gi:4505752 /UG=Hs.181013 phosphoglycerate mutase 1 (brain) /FL=gb:BC000455.1 gb:NM_002629.1 gb:J04173.1 NM_002629 phosphoglycerate mutase 1 (brain) PGAM1 5223 NM_002629 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from direct assay /// 0006096 // glycolytic process // traceable author statement /// 0006110 // regulation of glycolytic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0043456 // regulation of pentose-phosphate shunt // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045730 // respiratory burst // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004082 // bisphosphoglycerate mutase activity // inferred from electronic annotation /// 0004083 // bisphosphoglycerate 2-phosphatase activity // inferred from electronic annotation /// 0004619 // phosphoglycerate mutase activity // inferred from direct assay /// 0004619 // phosphoglycerate mutase activity // inferred from mutant phenotype /// 0004619 // phosphoglycerate mutase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction -593.40 1610.80 -6.56 0.00 0.00 -4.44
218729_at 218729_at NM_020169 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020169.1 /DEF=Homo sapiens latexin protein (LXN), mRNA. /FEA=mRNA /GEN=LXN /PROD=latexin protein /DB_XREF=gi:9910395 /UG=Hs.109276 latexin protein /FL=gb:BC005346.1 gb:AF282626.1 gb:NM_020169.1 NM_020169 latexin LXN 56925 NM_020169 0006954 // inflammatory response // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 111.90 281.45 6.55 0.00 0.00 -4.44
200800_s_at 200800_s_at NM_005345 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005345.3 /DEF=Homo sapiens heat shock 70kD protein 1A (HSPA1A), mRNA. /FEA=mRNA /GEN=HSPA1A /PROD=heat shock 70kD protein 1A /DB_XREF=gi:5579469 /UG=Hs.8997 heat shock 70kD protein 1A /FL=gb:BC002453.1 gb:NM_005345.3 NM_005345 heat shock 70kDa protein 1A /// heat shock 70kDa protein 1B /// heat shock 70kDa protein 1-like HSPA1A /// HSPA1B /// HSPA1L 3303 /// 3304 /// 3305 NM_005345 /// NM_005346 /// NM_005527 /// XM_005249070 /// XM_005249071 /// XM_005249073 /// XM_005272813 /// XM_005272816 /// XM_005272817 /// XM_005274859 /// XM_005274861 /// XM_005274862 /// XM_005274970 /// XM_005274973 /// XM_005274974 /// XM_005275399 /// XM_005275401 /// XM_005275402 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006402 // mRNA catabolic process // inferred from direct assay /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay /// 0006986 // response to unfolded protein // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009615 // response to virus // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010941 // regulation of cell death // inferred from mutant phenotype /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0034605 // cellular response to heat // inferred from direct assay /// 0042026 // protein refolding // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045648 // positive regulation of erythrocyte differentiation // inferred from mutant phenotype /// 0060548 // negative regulation of cell death // inferred from mutant phenotype /// 0070370 // cellular heat acclimation // inferred from mutant phenotype /// 0090084 // negative regulation of inclusion body assembly // inferred from direct assay /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // traceable author statement /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005814 // centriole // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016234 // inclusion body // inferred from direct assay /// 0016235 // aggresome // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001618 // virus receptor activity // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042623 // ATPase activity, coupled // inferred from direct assay /// 0044183 // protein binding involved in protein folding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement 90.77 64.26 6.54 0.00 0.00 -4.44
202949_s_at 202949_s_at NM_001450 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001450.1 /DEF=Homo sapiens four and a half LIM domains 2 (FHL2), mRNA. /FEA=mRNA /GEN=FHL2 /PROD=four and a half LIM domains 2 /DB_XREF=gi:4503722 /UG=Hs.8302 four and a half LIM domains 2 /FL=gb:U29332.1 gb:NM_001450.1 NM_001450 four and a half LIM domains 2 FHL2 2274 NM_001039492 /// NM_001450 /// NM_201555 /// NM_201556 /// NM_201557 /// XM_005263901 /// XM_005263902 /// XM_005263903 /// XM_005263904 /// XM_005263906 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0009725 // response to hormone // inferred from mutant phenotype /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0055014 // atrial cardiac muscle cell development // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation 0003713 // transcription coactivator activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // non-traceable author statement 266.35 808.40 6.53 0.00 0.00 -4.44
207551_s_at 207551_s_at NM_006800 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006800.1 /DEF=Homo sapiens male-specific lethal-3 (Drosophila)-like 1 (MSL3L1), mRNA. /FEA=mRNA /GEN=MSL3L1 /PROD=male-specific lethal-3 (Drosophila)-like 1 /DB_XREF=gi:5803103 /UG=Hs.88764 male-specific lethal-3 (Drosophila)-like 1 /FL=gb:AF117065.1 gb:NM_006800.1 NM_006800 male-specific lethal 3 homolog (Drosophila) MSL3 10943 NM_001193270 /// NM_001282174 /// NM_006800 /// NM_078628 /// NM_078629 /// NM_078630 /// XM_005274440 /// XM_006724461 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043984 // histone H4-K16 acetylation // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0072487 // MSL complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0035064 // methylated histone binding // inferred from direct assay -109.55 270.80 -6.53 0.00 0.00 -4.44
219120_at 219120_at NM_025203 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025203.1 /DEF=Homo sapiens hypothetical protein FLJ21945 (FLJ21945), mRNA. /FEA=mRNA /GEN=FLJ21945 /PROD=hypothetical protein FLJ21945 /DB_XREF=gi:13376797 /UG=Hs.24624 hypothetical protein FLJ21945 /FL=gb:NM_025203.1 NM_025203 chromosome 2 open reading frame 44 C2orf44 80304 NM_001142319 /// NM_025203 54.80 32.17 6.52 0.00 0.00 -4.44
221123_x_at 221123_x_at NM_018660 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018660.1 /DEF=Homo sapiens papillomavirus regulatory factor PRF-1 (LOC55893), mRNA. /FEA=mRNA /GEN=LOC55893 /PROD=papillomavirus regulatory factor PRF-1 /DB_XREF=gi:8923886 /UG=Hs.27410 papillomavirus regulatory factor PRF-1 /FL=gb:AF263928.1 gb:NM_018660.1 NM_018660 F-box protein 16 /// zinc finger protein 395 FBXO16 /// ZNF395 55893 /// 157574 NM_001258211 /// NM_018660 /// NM_172366 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred by curator 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -58.58 43.09 -6.52 0.00 0.00 -4.44
209939_x_at 209939_x_at AF005775 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF005775.1 /DEF=Homo sapiens caspase-like apoptosis regulatory protein 2 (clarp) mRNA, alternatively spliced, complete cds. /FEA=mRNA /GEN=clarp /PROD=caspase-like apoptosis regulatory protein 2 /DB_XREF=gi:2286146 /UG=Hs.195175 CASP8 and FADD-like apoptosis regulator /FL=gb:AF005775.1 AF005775 CASP8 and FADD-like apoptosis regulator CFLAR 8837 NM_001127183 /// NM_001127184 /// NM_001202515 /// NM_001202516 /// NM_001202517 /// NM_001202518 /// NM_001202519 /// NM_003879 /// XM_005246935 /// XM_005246936 /// XM_005246937 /// XM_005246938 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0014732 // skeletal muscle atrophy // inferred from sequence or structural similarity /// 0014842 // regulation of satellite cell proliferation // inferred from sequence or structural similarity /// 0014866 // skeletal myofibril assembly // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043403 // skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0060544 // regulation of necroptotic process // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1901740 // negative regulation of myoblast fusion // inferred from sequence or structural similarity /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031264 // death-inducing signaling complex // inferred from direct assay /// 0031265 // CD95 death-inducing signaling complex // inferred from electronic annotation /// 0097342 // ripoptosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0035877 // death effector domain binding // not recorded -301.90 703.55 -6.52 0.00 0.00 -4.44
212640_at 212640_at AV712602 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV712602 /FEA=EST /DB_XREF=gi:10731908 /DB_XREF=est:AV712602 /CLONE=DCAACD04 /UG=Hs.5957 Homo sapiens clone 24416 mRNA sequence AV712602 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b PTPLB 201562 NM_198402 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016829 // lyase activity // inferred from electronic annotation 72.47 106.71 6.52 0.00 0.00 -4.44
218888_s_at 218888_s_at NM_018092 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018092.1 /DEF=Homo sapiens hypothetical protein FLJ10430 (FLJ10430), mRNA. /FEA=mRNA /GEN=FLJ10430 /PROD=hypothetical protein FLJ10430 /DB_XREF=gi:8922419 /UG=Hs.6823 hypothetical protein FLJ10430 /FL=gb:NM_018092.1 NM_018092 neuropilin (NRP) and tolloid (TLL)-like 2 NETO2 81831 NM_001201477 /// NM_018092 /// XM_006721289 /// XM_006721290 /// XM_006721291 /// XM_006721292 2000312 // regulation of kainate selective glutamate receptor activity // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032983 // kainate selective glutamate receptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 134.68 183.91 6.52 0.00 0.00 -4.44
217734_s_at 217734_s_at NM_018031 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018031.2 /DEF=Homo sapiens WD repeat domain 6 (WDR6), mRNA. /FEA=mRNA /GEN=WDR6 /PROD=WD repeat domain 6 /DB_XREF=gi:11072092 /UG=Hs.8737 WD repeat domain 6 /FL=gb:NM_018031.2 gb:AF099100.1 NM_018031 WD repeat domain 6 WDR6 11180 NM_018031 /// XM_005264837 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010507 // negative regulation of autophagy // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 122.70 96.05 6.52 0.00 0.00 -4.44
45297_at 45297_at AI417917 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI417917:tg55d04.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2112679 /clone_end=3' /gb=AI417917 /gi=4261421 /ug=Hs.20733 /len=662 AI417917 EH-domain containing 2 EHD2 30846 NM_014601 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0032456 // endocytic recycling // inferred from genetic interaction /// 0072659 // protein localization to plasma membrane // inferred from sequence or structural similarity /// 1901741 // positive regulation of myoblast fusion // inferred from sequence or structural similarity /// 2001137 // positive regulation of endocytic recycling // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005768 // endosome // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from direct assay /// 0010008 // endosome membrane // traceable author statement /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 202.15 313.32 6.51 0.00 0.00 -4.44
218633_x_at 218633_x_at NM_018394 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018394.1 /DEF=Homo sapiens hypothetical protein FLJ11342 (FLJ11342), mRNA. /FEA=mRNA /GEN=FLJ11342 /PROD=hypothetical protein FLJ11342 /DB_XREF=gi:8923000 /UG=Hs.266514 hypothetical protein FLJ11342 /FL=gb:NM_018394.1 NM_018394 abhydrolase domain containing 10 ABHD10 55347 NM_001272069 /// NM_018394 /// NR_073570 /// NR_073571 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019391 // glucuronoside catabolic process // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from direct assay /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 76.80 141.72 6.50 0.00 0.00 -4.44
208776_at 208776_at BF432873 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF432873 /FEA=EST /DB_XREF=gi:11445036 /DB_XREF=est:7n28a02.x1 /CLONE=IMAGE:3565730 /UG=Hs.90744 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 /FL=gb:BC000437.1 gb:BC004430.1 gb:AB003102.1 gb:AF001212.1 gb:NM_002815.1 BF432873 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 PSMD11 5717 NM_001270482 /// NM_002815 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043248 // proteasome assembly // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0048863 // stem cell differentiation // inferred from mutant phenotype /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 86.28 71.56 6.50 0.00 0.00 -4.44
212992_at 212992_at AI935123 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI935123 /FEA=EST /DB_XREF=gi:5673993 /DB_XREF=est:wp13h09.x1 /CLONE=IMAGE:2464769 /UG=Hs.57548 ESTs AI935123 AHNAK nucleoprotein 2 AHNAK2 113146 NM_138420 /// XM_005267299 0001778 // plasma membrane repair // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0030018 // Z disc // inferred from sequence or structural similarity /// 0030315 // T-tubule // non-traceable author statement /// 0030659 // cytoplasmic vesicle membrane // inferred from sequence or structural similarity /// 0042383 // sarcolemma // non-traceable author statement /// 0043034 // costamere // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction 156.35 211.22 6.50 0.00 0.00 -4.44
212337_at 212337_at AI687738 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI687738 /FEA=EST /DB_XREF=gi:4899032 /DB_XREF=est:tp93g08.x1 /CLONE=IMAGE:2206910 /UG=Hs.699 peptidylprolyl isomerase B (cyclophilin B) AI687738 taurine up-regulated 1 (non-protein coding) TUG1 55000 NR_002323 /// NR_110492 /// NR_110493 115.25 219.78 6.49 0.00 0.00 -4.44
212217_at 212217_at AU154782 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU154782 /FEA=EST /DB_XREF=gi:11016303 /DB_XREF=est:AU154782 /CLONE=NT2RP4002085 /UG=Hs.110 putative L-type neutral amino acid transporter AU154782 prolyl endopeptidase-like PREPL 9581 NM_001042385 /// NM_001042386 /// NM_001171603 /// NM_001171606 /// NM_001171613 /// NM_001171617 /// NM_006036 /// XM_005264653 /// XM_005264654 /// XM_005264655 /// XM_005264657 /// XM_005264658 /// XM_005264659 /// XM_005264660 /// XM_006712151 /// XM_006712152 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070008 // serine-type exopeptidase activity // inferred from electronic annotation 51.78 62.69 6.49 0.00 0.00 -4.44
213400_s_at 213400_s_at AV753028 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV753028 /FEA=EST /DB_XREF=gi:10910876 /DB_XREF=est:AV753028 /CLONE=NPDBCD07 /UG=Hs.76536 transducin (beta)-like 1 AV753028 transducin (beta)-like 1X-linked TBL1X 6907 NM_001139466 /// NM_001139467 /// NM_001139468 /// NM_005647 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006508 // proteolysis // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // traceable author statement /// 0007605 // sensory perception of sound // inferred from mutant phenotype /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from mutant phenotype 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from genetic interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay -70.35 130.25 -6.48 0.00 0.00 -4.44
218681_s_at 218681_s_at NM_022044 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022044.1 /DEF=Homo sapiens stromal cell-derived factor 2-like 1 (SDF2L1), mRNA. /FEA=mRNA /GEN=SDF2L1 /PROD=stromal cell-derived factor 2-like 1 /DB_XREF=gi:11545742 /UG=Hs.303116 stromal cell-derived factor 2-like 1 /FL=gb:AB043007.1 gb:NM_022044.1 NM_022044 stromal cell-derived factor 2-like 1 SDF2L1 23753 NM_022044 0006208 // pyrimidine nucleobase catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016812 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides // inferred from electronic annotation 76.25 130.10 6.48 0.00 0.00 -4.44
212519_at 212519_at AL518159 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL518159 /FEA=EST /DB_XREF=gi:12781652 /DB_XREF=est:AL518159 /CLONE=CS0DA010YD02 (5 prime) /UG=Hs.7766 ubiquitin-conjugating enzyme E2E 1 (homologous to yeast UBC45) /FL=gb:NM_003341.1 AL518159 ubiquitin-conjugating enzyme E2E 1 UBE2E1 7324 NM_001202476 /// NM_003341 /// NM_182666 /// XM_005265431 0000209 // protein polyubiquitination // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010390 // histone monoubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0032020 // ISG15-protein conjugation // inferred from direct assay /// 0033523 // histone H2B ubiquitination // inferred from direct assay /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0042296 // ISG15 ligase activity // inferred from direct assay -216.17 787.44 -6.48 0.00 0.00 -4.44
203002_at 203002_at NM_016201 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016201.1 /DEF=Homo sapiens Leman coiled-coil protein (LCCP), mRNA. /FEA=mRNA /GEN=LCCP /PROD=Leman coiled-coil protein /DB_XREF=gi:7705577 /UG=Hs.92186 Leman coiled-coil protein /FL=gb:AF175966.1 gb:NM_016201.1 NM_016201 angiomotin like 2 AMOTL2 51421 NM_001278683 /// NM_001278685 /// NM_016201 /// XM_005247520 /// XM_006713654 /// XM_006713655 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0035329 // hippo signaling // traceable author statement 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation 120.48 231.06 6.48 0.00 0.00 -4.44
212088_at 212088_at BF570122 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF570122 /FEA=EST /DB_XREF=gi:11643834 /DB_XREF=est:602185972T1 /CLONE=IMAGE:4310632 /UG=Hs.75353 KIAA0123 protein BF570122 peptidase (mitochondrial processing) alpha PMPCA 23203 NM_001282944 /// NM_001282946 /// NM_015160 /// XM_005266059 0006508 // proteolysis // traceable author statement /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 82.57 83.21 6.48 0.00 0.00 -4.44
201420_s_at 201420_s_at BF975273 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF975273 /FEA=EST /DB_XREF=gi:12342488 /DB_XREF=est:602244783F1 /CLONE=IMAGE:4335765 /UG=Hs.11039 hypothetical protein MGC2722 /FL=gb:BC001679.1 gb:NM_024102.1 BF975273 WD repeat domain 77 WDR77 79084 NM_024102 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from genetic interaction /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from genetic interaction /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0034709 // methylosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from genetic interaction 82.63 159.64 6.48 0.00 0.00 -4.44
202561_at 202561_at AF070613 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF070613.1 /DEF=Homo sapiens clone 24585 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3387995 /UG=Hs.131814 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase /FL=gb:AF082556.1 gb:NM_003747.1 AF070613 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase TNKS 8658 NM_003747 /// XM_006716263 0000209 // protein polyubiquitination // inferred from direct assay /// 0006471 // protein ADP-ribosylation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0032210 // regulation of telomere maintenance via telomerase // inferred by curator /// 0032212 // positive regulation of telomere maintenance via telomerase // inferred from direct assay /// 0032212 // positive regulation of telomere maintenance via telomerase // inferred from mutant phenotype /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051225 // spindle assembly // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0070198 // protein localization to chromosome, telomeric region // inferred from mutant phenotype /// 0070212 // protein poly-ADP-ribosylation // inferred from direct assay /// 0070213 // protein auto-ADP-ribosylation // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0000242 // pericentriolar material // traceable author statement /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // inferred from direct assay /// 0000784 // nuclear chromosome, telomeric region // inferred from direct assay /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0031965 // nuclear membrane // traceable author statement 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 72.43 96.04 6.47 0.00 0.00 -4.44
202615_at 202615_at BF222895 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF222895 /FEA=EST /DB_XREF=gi:11130072 /DB_XREF=est:7q24f10.x1 /CLONE=IMAGE:3699235 /UG=Hs.296261 guanine nucleotide binding protein (G protein), q polypeptide /FL=gb:U43083.1 gb:AF329284.1 gb:AF011496.1 gb:NM_002072.1 BF222895 guanine nucleotide binding protein (G protein), q polypeptide GNAQ 2776 NM_002072 0001501 // skeletal system development // inferred from electronic annotation /// 0001508 // action potential // not recorded /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // not recorded /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007215 // glutamate receptor signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0016322 // neuron remodeling // inferred from electronic annotation /// 0021884 // forebrain neuron development // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0035412 // regulation of catenin import into nucleus // inferred from mutant phenotype /// 0042711 // maternal behavior // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0045634 // regulation of melanocyte differentiation // inferred from electronic annotation /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0060158 // phospholipase C-activating dopamine receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001664 // G-protein coupled receptor binding // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005096 // GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031826 // type 2A serotonin receptor binding // /// 0046872 // metal ion binding // inferred from electronic annotation 185.78 350.91 6.47 0.00 0.00 -4.44
219563_at 219563_at NM_024633 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024633.1 /DEF=Homo sapiens hypothetical protein FLJ21276 (FLJ21276), mRNA. /FEA=mRNA /GEN=FLJ21276 /PROD=hypothetical protein FLJ21276 /DB_XREF=gi:13375863 /UG=Hs.41502 hypothetical protein FLJ21276 /FL=gb:NM_024633.1 NM_024633 long intergenic non-protein coding RNA 341 /// spectrin repeat containing, nuclear envelope family member 3 LINC00341 /// SYNE3 79686 /// 161176 NM_024633 /// NM_152592 /// NR_026779 /// XM_005267376 /// XM_005267377 /// XM_006720063 /// XM_006720064 /// XM_006720065 /// XM_006720066 /// XM_006720067 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0090150 // establishment of protein localization to membrane // inferred from direct assay /// 0090286 // cytoskeletal anchoring at nuclear membrane // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0034993 // SUN-KASH complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from mutant phenotype 53.87 54.34 6.47 0.00 0.00 -4.44
213093_at 213093_at AI471375 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI471375 /FEA=EST /DB_XREF=gi:4333465 /DB_XREF=est:tm10c12.x1 /CLONE=IMAGE:2156182 /UG=Hs.80206 glucose-6-phosphate dehydrogenase AI471375 protein kinase C, alpha PRKCA 5578 NM_002737 /// XM_006721972 /// XR_243672 /// XR_243673 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001816 // cytokine production // inferred from mutant phenotype /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002159 // desmosome assembly // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006629 // lipid metabolic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006739 // NADP metabolic process // inferred from direct assay /// 0006740 // NADPH regeneration // inferred from mutant phenotype /// 0006749 // glutathione metabolic process // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0007194 // negative regulation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from electronic annotation /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0010613 // positive regulation of cardiac muscle hypertrophy // inferred from sequence or structural similarity /// 0010734 // negative regulation of protein glutathionylation // inferred from mutant phenotype /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019322 // pentose biosynthetic process // inferred from direct assay /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0031666 // positive regulation of lipopolysaccharide-mediated signaling pathway // inferred from mutant phenotype /// 0032094 // response to food // inferred from electronic annotation /// 0034351 // negative regulation of glial cell apoptotic process // inferred from mutant phenotype /// 0034599 // cellular response to oxidative stress // inferred from mutant phenotype /// 0035408 // histone H3-T6 phosphorylation // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0036289 // peptidyl-serine autophosphorylation // inferred from electronic annotation /// 0043249 // erythrocyte maturation // inferred from mutant phenotype /// 0043523 // regulation of neuron apoptotic process // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // inferred from sequence or structural similarity /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046390 // ribose phosphate biosynthetic process // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // inferred from electronic annotation /// 0051156 // glucose 6-phosphate metabolic process // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 0071322 // cellular response to carbohydrate stimulus // inferred from electronic annotation /// 0090330 // regulation of platelet aggregation // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation /// 2000707 // positive regulation of dense core granule biogenesis // inferred from sequence or structural similarity 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from direct assay /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from electronic annotation /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from mutant phenotype /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from sequence or structural similarity /// 0004698 // calcium-dependent protein kinase C activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0005536 // glucose binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0035403 // histone kinase activity (H3-T6 specific) // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from direct assay /// 0050661 // NADP binding // inferred from electronic annotation 96.62 123.21 6.47 0.00 0.00 -4.44
200808_s_at 200808_s_at NM_003461 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003461.1 /DEF=Homo sapiens zyxin (ZYX), mRNA. /FEA=mRNA /GEN=ZYX /PROD=zyxin /DB_XREF=gi:4508046 /UG=Hs.75873 zyxin /FL=gb:NM_003461.1 NM_003461 zyxin ZYX 7791 NM_001010972 /// NM_003461 /// XM_005250052 /// XM_005250053 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 194.80 666.50 6.47 0.00 0.00 -4.44
218082_s_at 218082_s_at NM_014517 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014517.1 /DEF=Homo sapiens upstream binding protein 1 (LBP-1a) (UBP1), mRNA. /FEA=mRNA /GEN=UBP1 /PROD=upstream binding protein 1 (LBP-1a) /DB_XREF=gi:7657668 /UG=Hs.28423 upstream binding protein 1 (LBP-1a) /FL=gb:AF198487.1 gb:NM_014517.1 NM_014517 upstream binding protein 1 (LBP-1a) UBP1 7342 NM_001128160 /// NM_001128161 /// NM_014517 /// XM_006713322 /// XR_427288 /// XR_427289 0001525 // angiogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0019079 // viral genome replication // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // traceable author statement 0005634 // nucleus // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement 151.35 279.82 6.46 0.00 0.00 -4.44
202169_s_at 202169_s_at AF302110 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF302110.1 /DEF=Homo sapiens alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase mRNA, complete cds. /FEA=mRNA /PROD=alpha-aminoadipic semialdehydedehydrogenase-phosphopantetheinyl transferase /DB_XREF=gi:11120434 /UG=Hs.64595 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase /FL=gb:AF302110.1 gb:AF136978.1 gb:AF151838.1 gb:AF151057.1 gb:NM_015423.1 gb:AF201943.1 AF302110 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase AASDHPPT 60496 NM_015423 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0009059 // macromolecule biosynthetic process // inferred from electronic annotation /// 0015939 // pantothenate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008897 // holo-[acyl-carrier-protein] synthase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 137.98 354.56 6.46 0.00 0.00 -4.44
212642_s_at 212642_s_at AL023584 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL023584 /DEF=Human DNA sequence from clone 67K17 on chromosome 6q24.1-24.3. Contains the HIVEP2 (Schnurri-2) gene for HIV type 1 Enhancer-binding Protein 2, and a possible pseudogene in an intron of this gene. Contains STSs and GSSs and an AAAT repeat polymorp... /FEA=mRNA /DB_XREF=gi:3790154 /UG=Hs.75063 human immunodeficiency virus type I enhancer-binding protein 2 /FL=gb:NM_006734.1 AL023584 human immunodeficiency virus type I enhancer binding protein 2 HIVEP2 3097 NM_006734 /// XM_005266957 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -154.90 99.75 -6.45 0.00 0.00 -4.44
217795_s_at 217795_s_at W74580 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W74580 /FEA=EST /DB_XREF=gi:1384812 /DB_XREF=est:zd76g10.s1 /CLONE=IMAGE:346626 /UG=Hs.323193 hypothetical protein MGC3222 /FL=gb:AL136916.1 gb:BC003125.1 gb:NM_024334.1 W74580 transmembrane protein 43 TMEM43 79188 NM_024334 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -125.02 373.81 -6.45 0.00 0.00 -4.44
202878_s_at 202878_s_at NM_012072 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012072.2 /DEF=Homo sapiens complement component C1q receptor (C1QR), mRNA. /FEA=mRNA /GEN=C1QR /PROD=complement component C1q receptor /DB_XREF=gi:11496985 /UG=Hs.97199 complement component C1q receptor /FL=gb:NM_012072.2 gb:U94333.1 NM_012072 CD93 molecule CD93 22918 NM_012072 0006909 // phagocytosis // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042116 // macrophage activation // non-traceable author statement 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred by curator /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation 0001849 // complement component C1q binding // inferred from direct assay /// 0004872 // receptor activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation 472.43 1576.84 6.45 0.00 0.00 -4.44
222157_s_at 222157_s_at AB040882 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB040882.1 /DEF=Homo sapiens mRNA for KIAA1449 protein, partial cds. /FEA=mRNA /GEN=KIAA1449 /PROD=KIAA1449 protein /DB_XREF=gi:7959156 /UG=Hs.109778 KIAA1449 protein AB040882 WD repeat domain 48 WDR48 57599 NM_020839 /// XM_005265346 0016032 // viral process // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -60.62 93.69 -6.45 0.00 0.00 -4.44
202691_at 202691_at NM_006938 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006938.1 /DEF=Homo sapiens small nuclear ribonucleoprotein D1 polypeptide (16kD) (SNRPD1), mRNA. /FEA=mRNA /GEN=SNRPD1 /PROD=small nuclear ribonucleoprotein D1 polypeptide(16kD) /DB_XREF=gi:5902101 /UG=Hs.86948 small nuclear ribonucleoprotein D1 polypeptide (16kD) /FL=gb:BC001721.1 gb:J03798.1 gb:NM_006938.1 NM_006938 small nuclear ribonucleoprotein D1 polypeptide 16kDa SNRPD1 6632 NM_001291916 /// NM_006938 0000245 // spliceosomal complex assembly // traceable author statement /// 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005685 // U1 snRNP // inferred from direct assay /// 0005687 // U4 snRNP // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0034709 // methylosome // inferred from direct assay /// 0034715 // pICln-Sm protein complex // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 62.78 85.14 6.44 0.00 0.00 -4.44
209140_x_at 209140_x_at L42024 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L42024.1 /DEF=Homo sapiens MHC HLA-B39 mRNA, complete cds. /FEA=mRNA /GEN=HLA-B39 /PROD=major histocompatibility complex /DB_XREF=gi:804748 /UG=Hs.77961 major histocompatibility complex, class I, B /FL=gb:L37880.1 gb:U29057.1 gb:U29480.1 gb:U63653.1 gb:D85761.1 gb:D85762.1 gb:M77774.1 gb:M77778.1 gb:M77777.1 gb:M16102.1 gb:M84380.1 gb:M32317.1 gb:M24033.1 gb:L17005.1 gb:U88407.1 gb:U29083.1 gb:L24373.1 gb:U03698.1 gb:U04787.1 gb:U04244.1 gb:U04245.1 gb:NM_005514.1 gb:L33922.1 gb:AF189017.1 gb:U21052.1 gb:U21053.1 gb:L36318.1 gb:U09912.1 gb:L42024.1 L42024 major histocompatibility complex, class I, B HLA-B 3106 NM_005514 /// XM_005249043 /// XM_005275100 /// XM_005275238 /// XM_005275376 /// XM_005275377 /// XM_005275535 /// XM_006725904 /// XM_006725905 /// XR_246962 /// XR_427830 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0002667 // regulation of T cell anergy // inferred from mutant phenotype /// 0006952 // defense response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016045 // detection of bacterium // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032655 // regulation of interleukin-12 production // inferred from mutant phenotype /// 0032675 // regulation of interleukin-6 production // inferred from mutant phenotype /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 2001198 // regulation of dendritic cell differentiation // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0046977 // TAP binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction -381.55 792.85 -6.44 0.00 0.00 -4.44
220911_s_at 220911_s_at NM_025081 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025081.1 /DEF=Homo sapiens KIAA1305 protein (KIAA1305), mRNA. /FEA=mRNA /GEN=KIAA1305 /PROD=hypothetical protein FLJ11811 /DB_XREF=gi:13378146 /UG=Hs.288348 KIAA1305 protein /FL=gb:NM_025081.1 NM_025081 NYN domain and retroviral integrase containing NYNRIN 57523 NM_025081 0015074 // DNA integration // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 76.65 50.95 6.43 0.00 0.00 -4.44
209308_s_at 209308_s_at BC002461 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002461.1 /DEF=Homo sapiens, BCL2adenovirus E1B 19kD-interacting protein 2, clone MGC:1529, mRNA, complete cds. /FEA=mRNA /PROD=BCL2adenovirus E1B 19kD-interacting protein 2 /DB_XREF=gi:12803290 /UG=Hs.155596 BCL2adenovirus E1B 19kD-interacting protein 2 /FL=gb:BC002461.1 BC002461 BCL2/adenovirus E1B 19kDa interacting protein 2 BNIP2 663 NM_004330 /// XM_005254607 0001824 // blastocyst development // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from physical interaction /// 0042692 // muscle cell differentiation // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0051057 // positive regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051297 // centrosome organization // inferred from electronic annotation 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005814 // centriole // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0031616 // spindle pole centrosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005096 // GTPase activator activity // traceable author statement /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded -108.60 211.08 -6.43 0.00 0.00 -4.44
218632_at 218632_at NM_024602 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024602.1 /DEF=Homo sapiens hypothetical protein FLJ21156 (FLJ21156), mRNA. /FEA=mRNA /GEN=FLJ21156 /PROD=hypothetical protein FLJ21156 /DB_XREF=gi:13375804 /UG=Hs.26058 hypothetical protein FLJ21156 /FL=gb:NM_024602.1 NM_024602 HECT domain containing E3 ubiquitin protein ligase 3 HECTD3 79654 NM_024602 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from electronic annotation 80.58 132.26 6.43 0.00 0.00 -4.44
200976_s_at 200976_s_at NM_006024 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006024.2 /DEF=Homo sapiens Tax1 (human T-cell leukemia virus type I) binding protein 1 (TAX1BP1), mRNA. /FEA=mRNA /GEN=TAX1BP1 /PROD=Tax1 (human T-cell leukemia virus type I)binding protein 1 /DB_XREF=gi:5803188 /UG=Hs.5437 Tax1 (human T-cell leukemia virus type I) binding protein 1 /FL=gb:U33821.2 gb:NM_006024.2 gb:AF090891.1 gb:AF268075.1 NM_006024 Tax1 (human T-cell leukemia virus type I) binding protein 1 TAX1BP1 8887 NM_001079864 /// NM_001206901 /// NM_001206902 /// NM_006024 /// XM_005249900 0006915 // apoptotic process // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from sequence or structural similarity -176.12 417.56 -6.43 0.00 0.00 -4.44
202939_at 202939_at NM_005857 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005857.1 /DEF=Homo sapiens zinc metalloproteinase, STE24 (yeast, homolog) (ZMPSTE24), mRNA. /FEA=mRNA /GEN=ZMPSTE24 /PROD=zinc metalloproteinase, STE24 (yeast, homolog) /DB_XREF=gi:5032128 /UG=Hs.25846 zinc metalloproteinase, STE24 (yeast, homolog) /FL=gb:AB016068.1 gb:AF064867.1 gb:NM_005857.1 NM_005857 zinc metallopeptidase STE24 ZMPSTE24 10269 NM_005857 0006508 // proteolysis // traceable author statement /// 0006998 // nuclear envelope organization // inferred from electronic annotation /// 0030327 // prenylated protein catabolic process // inferred from electronic annotation /// 0071586 // CAAX-box protein processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 194.98 430.86 6.42 0.00 0.00 -4.44
212068_s_at 212068_s_at AB011087 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011087.1 /DEF=Homo sapiens mRNA for KIAA0515 protein, partial cds. /FEA=mRNA /GEN=KIAA0515 /PROD=KIAA0515 protein /DB_XREF=gi:3043553 /UG=Hs.108945 KIAA0515 protein AB011087 proline-rich coiled-coil 2B PRRC2B 84726 NM_013318 /// NM_032640 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 115.45 186.03 6.42 0.00 0.00 -4.44
214651_s_at 214651_s_at U41813 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U41813.1 /DEF=Human class I homeoprotein (HOXA9) mRNA, partial cds. /FEA=mRNA /GEN=HOXA9 /PROD=HOXA9 /DB_XREF=gi:1184168 /UG=Hs.127428 homeo box A9 /FL=gb:NM_002142.1 U41813 HOXA10-HOXA9 readthrough /// homeobox A9 /// microRNA 196b HOXA10-HOXA9 /// HOXA9 /// MIR196B 3205 /// 442920 /// 100534589 NM_152739 /// NR_029911 /// NR_037940 0001501 // skeletal system development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0042118 // endothelial cell activation // inferred from mutant phenotype /// 0045638 // negative regulation of myeloid cell differentiation // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 93.10 145.35 6.42 0.00 0.00 -4.44
208711_s_at 208711_s_at BC000076 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000076.1 /DEF=Homo sapiens, cyclin D1 (PRAD1: parathyroid adenomatosis 1), clone MGC:2316, mRNA, complete cds. /FEA=mRNA /PROD=cyclin D1 (PRAD1: parathyroid adenomatosis 1) /DB_XREF=gi:12652656 /UG=Hs.82932 cyclin D1 (PRAD1: parathyroid adenomatosis 1) /FL=gb:BC000076.1 gb:M73554.1 BC000076 cyclin D1 CCND1 595 NM_053056 /// XM_006718653 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // inferred from direct assay /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0000320 // re-entry into mitotic cell cycle // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007595 // lactation // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010633 // negative regulation of epithelial cell migration // inferred from electronic annotation /// 0010633 // negative regulation of epithelial cell migration // inferred from sequence or structural similarity /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from direct assay /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031571 // mitotic G1 DNA damage checkpoint // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033601 // positive regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051497 // negative regulation of stress fiber assembly // inferred from electronic annotation /// 0051497 // negative regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation /// 0060675 // ureteric bud morphogenesis // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0070141 // response to UV-A // inferred from direct assay /// 0071157 // negative regulation of cell cycle arrest // inferred from direct assay /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0090191 // negative regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0090191 // negative regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 1900025 // negative regulation of substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 1900025 // negative regulation of substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 1900028 // negative regulation of ruffle assembly // inferred from electronic annotation /// 1900028 // negative regulation of ruffle assembly // inferred from sequence or structural similarity /// 2000045 // regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 2000146 // negative regulation of cell motility // inferred from electronic annotation /// 2000146 // negative regulation of cell motility // inferred from sequence or structural similarity /// 2000738 // positive regulation of stem cell differentiation // inferred from electronic annotation 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from sequence or structural similarity /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003714 // transcription corepressor activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein serine/threonine kinase regulator activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0070064 // proline-rich region binding // inferred from direct assay 102.32 142.14 6.42 0.00 0.00 -4.44
201098_at 201098_at NM_004766 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004766.1 /DEF=Homo sapiens coatomer protein complex, subunit beta 2 (beta prime) (COPB2), mRNA. /FEA=mRNA /GEN=COPB2 /PROD=coatomer protein complex, subunit beta 2 (betaprime) /DB_XREF=gi:4758031 /UG=Hs.75724 coatomer protein complex, subunit beta 2 (beta prime) /FL=gb:BC000326.1 gb:NM_004766.1 NM_004766 coatomer protein complex, subunit beta 2 (beta prime) COPB2 9276 NM_004766 /// NR_023350 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from direct assay /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 111.28 348.89 6.42 0.00 0.00 -4.44
201346_at 201346_at NM_024551 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024551.1 /DEF=Homo sapiens hypothetical protein FLJ21432 (FLJ21432), mRNA. /FEA=mRNA /GEN=FLJ21432 /PROD=hypothetical protein FLJ21432 /DB_XREF=gi:13375714 /UG=Hs.11641 hypothetical protein FLJ21432 /FL=gb:NM_024551.1 gb:BC004906.1 NM_024551 adiponectin receptor 2 ADIPOR2 79602 NM_024551 /// XM_005253789 /// XM_006719018 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // inferred from sequence or structural similarity /// 0019395 // fatty acid oxidation // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0033211 // adiponectin-activated signaling pathway // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042562 // hormone binding // not recorded /// 0042562 // hormone binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 72.10 177.57 6.41 0.00 0.00 -4.44
205890_s_at 205890_s_at NM_006398 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006398.1 /DEF=Homo sapiens diubiquitin (UBD), mRNA. /FEA=mRNA /GEN=UBD /PROD=diubiquitin /DB_XREF=gi:5454143 /UG=Hs.44532 diubiquitin /FL=gb:NM_006398.1 NM_006398 gamma-aminobutyric acid (GABA) B receptor, 1 /// ubiquitin D GABBR1 /// UBD 2550 /// 10537 NM_001470 /// NM_006398 /// NM_021903 /// NM_021904 /// NM_021905 /// XM_005248982 /// XM_005272785 /// XM_005274841 /// XM_005274931 /// XM_005275088 /// XM_005275227 /// XM_005275363 /// XM_006715047 /// XM_006725030 /// XM_006725477 /// XM_006725691 /// XM_006725807 /// XM_006725901 /// XM_006725988 /// XR_241884 /// XR_246960 /// XR_247352 /// XR_247386 /// XR_247400 /// XR_430672 /// XR_430972 0006508 // proteolysis // non-traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // traceable author statement /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from direct assay /// 0007268 // synaptic transmission // traceable author statement /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0032446 // protein modification by small protein conjugation // non-traceable author statement /// 0034341 // response to interferon-gamma // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from expression pattern /// 0043011 // myeloid dendritic cell differentiation // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0070842 // aggresome assembly // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016235 // aggresome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0038037 // G-protein coupled receptor dimeric complex // inferred from electronic annotation /// 0038039 // G-protein coupled receptor heterodimeric complex // inferred from physical interaction /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // G-protein coupled GABA receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0070628 // proteasome binding // inferred from direct assay -67.25 39.80 -6.41 0.00 0.00 -4.44
209272_at 209272_at AF045451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF045451.1 /DEF=Homo sapiens transcriptional regulatory protein p54 mRNA, complete cds. /FEA=mRNA /PROD=transcriptional regulatory protein p54 /DB_XREF=gi:3282822 /UG=Hs.107474 NGFI-A binding protein 1 (ERG1 binding protein 1) /FL=gb:AF045451.1 AF045451 NGFI-A binding protein 1 (EGR1 binding protein 1) NAB1 4664 NM_005966 /// XM_005246579 /// XM_005246580 /// XM_005246581 /// XM_005246582 /// XM_005246583 /// XM_005246584 /// XM_005246585 /// XM_005246586 /// XM_005246587 /// XM_006712540 0001958 // endochondral ossification // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0014037 // Schwann cell differentiation // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0045682 // regulation of epidermis development // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0005634 // nucleus // non-traceable author statement 0008134 // transcription factor binding // inferred from electronic annotation -61.63 97.79 -6.40 0.00 0.00 -4.44
205585_at 205585_at NM_001987 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001987.1 /DEF=Homo sapiens ets variant gene 6 (TEL oncogene) (ETV6), mRNA. /FEA=mRNA /GEN=ETV6 /PROD=ets variant gene 6 (TEL oncogene) /DB_XREF=gi:4503610 /UG=Hs.169081 ets variant gene 6 (TEL oncogene) /FL=gb:NM_001987.1 gb:U11732.1 NM_001987 ets variant 6 ETV6 2120 NM_001987 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006959 // humoral immune response // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0009887 // organ morphogenesis // traceable author statement /// 0030154 // cell differentiation // not recorded /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051573 // negative regulation of histone H3-K9 methylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0001227 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred by curator /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -54.70 59.30 -6.40 0.00 0.00 -4.44
206157_at 206157_at NM_002852 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002852.1 /DEF=Homo sapiens pentaxin-related gene, rapidly induced by IL-1 beta (PTX3), mRNA. /FEA=mRNA /GEN=PTX3 /PROD=pentaxin-related gene, rapidly induced by IL-1beta /DB_XREF=gi:4506332 /UG=Hs.2050 pentaxin-related gene, rapidly induced by IL-1 beta /FL=gb:M31166.1 gb:NM_002852.1 NM_002852 pentraxin 3, long PTX3 5806 NM_002852 0001878 // response to yeast // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0008228 // opsonization // inferred from electronic annotation /// 0045087 // innate immune response // inferred from direct assay /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0046597 // negative regulation of viral entry into host cell // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 1903016 // negative regulation of exo-alpha-sialidase activity // inferred from direct assay /// 1903019 // negative regulation of glycoprotein metabolic process // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay 0001849 // complement component C1q binding // inferred from direct assay /// 0001872 // (1->3)-beta-D-glucan binding // inferred from electronic annotation /// 0046790 // virion binding // inferred from direct assay -942.12 1783.16 -6.39 0.00 0.00 -4.44
201788_at 201788_at NM_007372 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007372.1 /DEF=Homo sapiens RNA helicase-related protein (RNAHP), mRNA. /FEA=mRNA /GEN=RNAHP /PROD=RNA helicase-related protein /DB_XREF=gi:11321631 /UG=Hs.8765 RNA helicase-related protein /FL=gb:NM_007372.1 gb:AF083255.1 NM_007372 DEAD (Asp-Glu-Ala-Asp) box helicase 42 DDX42 11325 NM_007372 /// NM_203499 /// XM_006721657 0006200 // ATP catabolic process // inferred from electronic annotation /// 0008104 // protein localization // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015030 // Cajal body // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 114.60 189.20 6.39 0.00 0.00 -4.44
212502_at 212502_at AV713053 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV713053 /FEA=EST /DB_XREF=gi:10732372 /DB_XREF=est:AV713053 /CLONE=DCAADD03 /UG=Hs.99821 Homo sapiens mRNA; cDNA DKFZp564C046 (from clone DKFZp564C046) AV713053 2-aminoethanethiol (cysteamine) dioxygenase ADO 84890 NM_032804 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047800 // cysteamine dioxygenase activity // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 62.55 98.40 6.39 0.00 0.00 -4.44
213455_at 213455_at W87466 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W87466 /FEA=EST /DB_XREF=gi:1401521 /DB_XREF=est:zh67c05.s1 /CLONE=IMAGE:417128 /UG=Hs.246885 hypothetical protein FLJ20783 W87466 family with sequence similarity 114, member A1 FAM114A1 92689 NM_138389 /// NR_033290 /// XM_005262672 /// XM_005262673 /// XM_006714033 0005737 // cytoplasm // inferred from electronic annotation 145.77 410.04 6.38 0.00 0.00 -4.44
210757_x_at 210757_x_at AF188298 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF188298.1 /DEF=Homo sapiens disabled 2 p93 (DAB2) mRNA, alternatively spliced, complete cds. /FEA=mRNA /GEN=DAB2 /PROD=disabled 2 p93 /DB_XREF=gi:6176335 /UG=Hs.81988 disabled (Drosophila) homolog 2 (mitogen-responsive phosphoprotein) /FL=gb:AF188298.1 AF188298 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) /// uncharacterized LOC101926921 DAB2 /// LOC101926921 1601 /// 101926921 NM_001244871 /// NM_001343 /// XR_241759 /// XR_249766 /// XR_251775 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006907 // pinocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007588 // excretion // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0032091 // negative regulation of protein binding // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein import into nucleus // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 2000096 // positive regulation of Wnt signaling pathway, planar cell polarity pathway // inferred from mutant phenotype /// 2000370 // positive regulation of clathrin-mediated endocytosis // inferred from mutant phenotype /// 2000643 // positive regulation of early endosome to late endosome transport // inferred from mutant phenotype /// 2001046 // positive regulation of integrin-mediated signaling pathway // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070022 // transforming growth factor beta receptor homodimeric complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0035612 // AP-2 adaptor complex binding // inferred from electronic annotation /// 0035615 // clathrin adaptor activity // inferred from mutant phenotype /// 0038024 // cargo receptor activity // inferred from mutant phenotype /// 0046332 // SMAD binding // inferred from direct assay 201.55 684.85 6.37 0.00 0.00 -4.44
221986_s_at 221986_s_at AW006750 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW006750 /FEA=EST /DB_XREF=gi:5855528 /DB_XREF=est:wr28h09.x1 /CLONE=IMAGE:2489057 /UG=Hs.246875 hypothetical protein FLJ20059 AW006750 kelch-like family member 24 KLHL24 54800 NM_017644 /// XM_005247552 /// XM_005247553 /// XM_005247554 /// XM_005247555 /// XM_005247556 /// XM_006713674 /// XR_241499 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -73.95 41.67 -6.37 0.00 0.00 -4.44
216841_s_at 216841_s_at X15132 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X15132.1 /DEF=Human mRNA for manganese containing superoxide dismutase (EC 1.15.1.1). /FEA=mRNA /DB_XREF=gi:34794 /UG=Hs.318885 superoxide dismutase 2, mitochondrial X15132 uncharacterized LOC100129518 /// superoxide dismutase 2, mitochondrial LOC100129518 /// SOD2 6648 /// 100129518 NM_000636 /// NM_001024465 /// NM_001024466 /// NR_037166 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000303 // response to superoxide // inferred from mutant phenotype /// 0001306 // age-dependent response to oxidative stress // inferred from electronic annotation /// 0001315 // age-dependent response to reactive oxygen species // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from electronic annotation /// 0003032 // detection of oxygen // inferred from electronic annotation /// 0003069 // vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006801 // superoxide metabolic process // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010042 // response to manganese ion // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010269 // response to selenium ion // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032364 // oxygen homeostasis // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033591 // response to L-ascorbic acid // inferred from electronic annotation /// 0034021 // response to silicon dioxide // inferred from electronic annotation /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048773 // erythrophore differentiation // inferred from electronic annotation /// 0050665 // hydrogen peroxide biosynthetic process // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from physical interaction /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071361 // cellular response to ethanol // inferred from electronic annotation /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0030145 // manganese ion binding // traceable author statement /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -491.43 270.44 -6.36 0.00 0.00 -4.44
217783_s_at 217783_s_at NM_016061 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016061.1 /DEF=Homo sapiens CGI-127 protein (LOC51646), mRNA. /FEA=mRNA /GEN=LOC51646 /PROD=CGI-127 protein /DB_XREF=gi:7706340 /UG=Hs.184542 CGI-127 protein /FL=gb:BC000836.1 gb:AF151885.1 gb:NM_016061.1 NM_016061 yippee-like 5 (Drosophila) YPEL5 51646 NM_001127399 /// NM_001127400 /// NM_001127401 /// NM_016061 -139.65 375.10 -6.36 0.00 0.00 -4.44
202557_at 202557_at AI718418 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI718418 /FEA=EST /DB_XREF=gi:5035674 /DB_XREF=est:as43b01.x1 /CLONE=IMAGE:2319913 /UG=Hs.288799 stress 70 protein chaperone, microsome-associated, 60kD /FL=gb:U04735.1 gb:NM_006948.1 AI718418 heat shock protein 70kDa family, member 13 HSPA13 6782 NM_006948 0000902 // cell morphogenesis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation -176.13 238.06 -6.36 0.00 0.00 -4.44
212445_s_at 212445_s_at AI357376 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI357376 /FEA=EST /DB_XREF=gi:4108997 /DB_XREF=est:qy13a06.x1 /CLONE=IMAGE:2011858 /UG=Hs.12017 homolog of yeast ubiquitin-protein ligase Rsp5; potential epithelial sodium channel regulator AI357376 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase NEDD4L 23327 NM_001144964 /// NM_001144965 /// NM_001144966 /// NM_001144967 /// NM_001144968 /// NM_001144969 /// NM_001144970 /// NM_001144971 /// NM_001243960 /// NM_015277 /// XM_005266658 /// XM_005266660 /// XM_005266663 /// XM_006722421 /// XM_006722422 /// XM_006722423 /// XM_006722424 /// XM_006722425 /// XM_006722426 /// XM_006722427 /// XM_006722428 /// XM_006722429 /// XM_006722430 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0003085 // negative regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0003254 // regulation of membrane depolarization // inferred from direct assay /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006513 // protein monoubiquitination // inferred from electronic annotation /// 0006814 // sodium ion transport // non-traceable author statement /// 0006883 // cellular sodium ion homeostasis // non-traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007588 // excretion // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0010038 // response to metal ion // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // non-traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0030104 // water homeostasis // non-traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0034765 // regulation of ion transmembrane transport // inferred from direct assay /// 0042176 // regulation of protein catabolic process // non-traceable author statement /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // non-traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060306 // regulation of membrane repolarization // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0086005 // ventricular cardiac muscle cell action potential // inferred from sequence or structural similarity /// 1901016 // regulation of potassium ion transmembrane transporter activity // inferred from direct assay /// 1901017 // negative regulation of potassium ion transmembrane transporter activity // inferred from direct assay /// 1901380 // negative regulation of potassium ion transmembrane transport // inferred from direct assay /// 1902306 // negative regulation of sodium ion transmembrane transport // inferred from direct assay /// 2000009 // negative regulation of protein localization to cell surface // inferred from direct assay /// 2000650 // negative regulation of sodium ion transmembrane transporter activity // inferred from direct assay /// 2000810 // regulation of tight junction assembly // inferred from electronic annotation /// 2001259 // positive regulation of cation channel activity // inferred from electronic annotation /// 2001288 // positive regulation of caveolin-mediated endocytosis // inferred from sequence or structural similarity 0005622 // intracellular // inferred by curator /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // not recorded /// 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0017080 // sodium channel regulator activity // inferred from direct assay /// 0019870 // potassium channel inhibitor activity // inferred from direct assay /// 0019871 // sodium channel inhibitor activity // inferred from direct assay /// 0044325 // ion channel binding // inferred from physical interaction -58.10 84.05 -6.35 0.00 0.00 -4.44
202628_s_at 202628_s_at NM_000602 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000602.1 /DEF=Homo sapiens serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 (SERPINE1), mRNA. /FEA=mRNA /GEN=SERPINE1 /PROD=serine (or cysteine) proteinase inhibitor, cladeE (nexin, plasminogen activator inhibitor type 1), member1 /DB_XREF=gi:10835158 /UG=Hs.82085 serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 /FL=gb:NM_000602.1 gb:M16006.1 NM_000602 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 SERPINE1 5054 NM_000602 /// NM_001165413 0001300 // chronological cell aging // inferred from expression pattern /// 0001525 // angiogenesis // inferred from expression pattern /// 0002576 // platelet degranulation // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010469 // regulation of receptor activity // inferred from direct assay /// 0010757 // negative regulation of plasminogen activation // inferred from direct assay /// 0010757 // negative regulation of plasminogen activation // inferred from mutant phenotype /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0014912 // negative regulation of smooth muscle cell migration // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030194 // positive regulation of blood coagulation // inferred from mutant phenotype /// 0030195 // negative regulation of blood coagulation // inferred by curator /// 0030198 // extracellular matrix organization // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0032757 // positive regulation of interleukin-8 production // inferred from mutant phenotype /// 0033629 // negative regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0035491 // positive regulation of leukotriene production involved in inflammatory response // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042730 // fibrinolysis // traceable author statement /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from direct assay /// 0050729 // positive regulation of inflammatory response // inferred from genetic interaction /// 0050829 // defense response to Gram-negative bacterium // inferred from genetic interaction /// 0051918 // negative regulation of fibrinolysis // inferred from direct assay /// 0061044 // negative regulation of vascular wound healing // inferred from genetic interaction /// 0061045 // negative regulation of wound healing // inferred by curator /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype /// 0090026 // positive regulation of monocyte chemotaxis // inferred from mutant phenotype /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2000098 // negative regulation of smooth muscle cell-matrix adhesion // inferred from direct assay /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from mutant phenotype 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement 0002020 // protease binding // inferred from physical interaction /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -1212.97 3988.36 -6.34 0.00 0.00 -4.44
209197_at 209197_at AA626780 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA626780 /FEA=EST /DB_XREF=gi:2539167 /DB_XREF=est:ad09f03.s1 /CLONE=IMAGE:877757 /UG=Hs.74554 KIAA0080 protein /FL=gb:BC004291.1 AA626780 synaptotagmin XI SYT11 23208 NM_152280 /// XM_005245014 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 67.62 117.01 6.34 0.00 0.00 -4.44
201671_x_at 201671_x_at BC003556 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003556.1 /DEF=Homo sapiens, ubiquitin specific protease 14 (tRNA-guanine transglycosylase), clone MGC:1453, mRNA, complete cds. /FEA=mRNA /PROD=ubiquitin specific protease 14 (tRNA-guaninetransglycosylase) /DB_XREF=gi:13097695 /UG=Hs.75981 ubiquitin specific protease 14 (tRNA-guanine transglycosylase) /FL=gb:BC003556.1 gb:NM_005151.1 gb:U30888.1 BC003556 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) USP14 9097 NM_001037334 /// NM_005151 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from mutant phenotype /// 0016579 // protein deubiquitination // inferred from direct assay /// 0050920 // regulation of chemotaxis // inferred from mutant phenotype /// 0061136 // regulation of proteasomal protein catabolic process // inferred from mutant phenotype 0000502 // proteasome complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004866 // endopeptidase inhibitor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008193 // tRNA guanylyltransferase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0070628 // proteasome binding // inferred from direct assay 127.45 245.47 6.34 0.00 0.00 -4.44
206562_s_at 206562_s_at NM_001892 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001892.1 /DEF=Homo sapiens casein kinase 1, alpha 1 (CSNK1A1), mRNA. /FEA=mRNA /GEN=CSNK1A1 /PROD=casein kinase 1, alpha 1 /DB_XREF=gi:4503088 /UG=Hs.283738 casein kinase 1, alpha 1 /FL=gb:NM_001892.1 gb:L37042.1 NM_001892 casein kinase 1, alpha 1 CSNK1A1 1452 NM_001025105 /// NM_001271741 /// NM_001271742 /// NM_001892 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -184.95 467.20 -6.34 0.00 0.00 -4.44
212199_at 212199_at AL566962 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL566962 /FEA=EST /DB_XREF=gi:12919867 /DB_XREF=est:AL566962 /CLONE=CS0DF026YH08 (3 prime) /UG=Hs.284281 Human putative ribosomal protein S1 mRNA AL566962 Morf4 family associated protein 1-like 1 MRFAP1L1 114932 NM_152301 /// NM_203462 /// XM_005247932 0005515 // protein binding // inferred from physical interaction 95.65 141.10 6.33 0.00 0.00 -4.44
203820_s_at 203820_s_at NM_006547 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006547.1 /DEF=Homo sapiens IGF-II mRNA-binding protein 3 (KOC1), mRNA. /FEA=mRNA /GEN=KOC1 /PROD=IGF-II mRNA-binding protein 3 /DB_XREF=gi:5729900 /UG=Hs.79440 IGF-II mRNA-binding protein 3 /FL=gb:U97188.1 gb:U76705.1 gb:AF117108.1 gb:NM_006547.1 NM_006547 insulin-like growth factor 2 mRNA binding protein 3 IGF2BP3 10643 NM_006547 /// XM_006715638 /// XM_006715639 0006412 // translation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0042035 // regulation of cytokine biosynthetic process // inferred by curator /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045182 // translation regulator activity // inferred from sequence or structural similarity /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay 255.55 595.85 6.33 0.00 0.00 -4.44
200715_x_at 200715_x_at BC000514 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000514.1 /DEF=Homo sapiens, ribosomal protein L13a, clone MGC:8547, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L13a /DB_XREF=gi:12653484 /UG=Hs.119122 ribosomal protein L13a /FL=gb:BC000514.1 gb:NM_012423.1 BC000514 ribosomal protein L13a /// small nucleolar RNA, C/D box 32A /// small nucleolar RNA, C/D box 33 /// small nucleolar RNA, C/D box 34 /// small nucleolar RNA, C/D box 35A RPL13A /// SNORD32A /// SNORD33 /// SNORD34 /// SNORD35A 23521 /// 26816 /// 26817 /// 26818 /// 26819 NM_001270491 /// NM_012423 /// NR_000018 /// NR_000019 /// NR_000020 /// NR_000021 /// NR_073024 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071346 // cellular response to interferon-gamma // inferred from direct assay /// 1901194 // negative regulation of formation of translation preinitiation complex // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -987.25 2490.22 -6.33 0.00 0.00 -4.44
203367_at 203367_at NM_007026 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007026.1 /DEF=Homo sapiens MKP-1 like protein tyrosine phosphatase (MKP-L), mRNA. /FEA=mRNA /GEN=MKP-L /PROD=MKP-1 like protein tyrosine phosphatase /DB_XREF=gi:5902001 /UG=Hs.91448 MKP-1 like protein tyrosine phosphatase /FL=gb:BC000370.1 gb:BC001894.1 gb:BC004448.1 gb:AF038844.1 gb:NM_007026.1 gb:AF120032.1 NM_007026 dual specificity phosphatase 14 DUSP14 11072 NM_007026 /// XM_005256977 /// XM_006725300 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 93.62 220.61 6.32 0.00 0.00 -4.44
217845_x_at 217845_x_at NM_014056 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014056.1 /DEF=Homo sapiens DKFZP564K247 protein (DKFZP564K247), mRNA. /FEA=mRNA /GEN=DKFZP564K247 /PROD=DKFZP564K247 protein /DB_XREF=gi:7661619 /UG=Hs.7917 DKFZP564K247 protein /FL=gb:BC000601.1 gb:AF077034.1 gb:AF145385.1 gb:AL110233.1 gb:NM_014056.1 NM_014056 HIG1 hypoxia inducible domain family, member 1A HIGD1A 25994 NM_001099668 /// NM_001099669 /// NM_014056 0006950 // response to stress // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 128.38 586.69 6.31 0.00 0.00 -4.44
211828_s_at 211828_s_at AF172268 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF172268.1 /DEF=Homo sapiens Traf2 and NCK interacting kinase, splice variant 5 (TNIK) mRNA, complete cds. /FEA=CDS /GEN=TNIK /PROD=Traf2 and NCK interacting kinase, splice variant5 /DB_XREF=gi:6110356 /UG=Hs.170204 KIAA0551 protein /FL=gb:AF172268.1 AF172268 TRAF2 and NCK interacting kinase TNIK 23043 NM_001161560 /// NM_001161561 /// NM_001161562 /// NM_001161563 /// NM_001161564 /// NM_001161565 /// NM_001161566 /// NM_015028 /// NR_027767 /// XM_006713555 0006468 // protein phosphorylation // inferred from direct assay /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007256 // activation of JNKK activity // inferred from direct assay /// 0007256 // activation of JNKK activity // inferred from mutant phenotype /// 0007399 // nervous system development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0055037 // recycling endosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 56.33 100.49 6.31 0.00 0.00 -4.44
201605_x_at 201605_x_at NM_004368 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004368.1 /DEF=Homo sapiens calponin 2 (CNN2), mRNA. /FEA=mRNA /GEN=CNN2 /PROD=calponin 2 /DB_XREF=gi:4758017 /UG=Hs.169718 calponin 2 /FL=gb:D83735.1 gb:NM_004368.1 NM_004368 calponin 2 CNN2 1265 NM_004368 /// NM_201277 0007010 // cytoskeleton organization // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0032970 // regulation of actin filament-based process // inferred from direct assay /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0050765 // negative regulation of phagocytosis // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from direct assay 0001725 // stress fiber // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005911 // cell-cell junction // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation 87.12 272.09 6.31 0.00 0.00 -4.44
219390_at 219390_at NM_017946 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017946.1 /DEF=Homo sapiens hypothetical protein FLJ20731 (FLJ20731), mRNA. /FEA=mRNA /GEN=FLJ20731 /PROD=hypothetical protein FLJ20731 /DB_XREF=gi:8923658 /UG=Hs.264636 hypothetical protein FLJ20731 /FL=gb:BC005206.1 gb:NM_017946.1 NM_017946 FK506 binding protein 14, 22 kDa FKBP14 55033 NM_017946 /// NR_046478 /// NR_046479 0000413 // protein peptidyl-prolyl isomerization // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0018208 // peptidyl-proline modification // /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0061077 // chaperone-mediated protein folding // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005528 // FK506 binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 55.22 73.96 6.30 0.00 0.00 -4.44
201378_s_at 201378_s_at NM_014847 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014847.1 /DEF=Homo sapiens KIAA0144 gene product (KIAA0144), mRNA. /FEA=mRNA /GEN=KIAA0144 /PROD=KIAA0144 gene product /DB_XREF=gi:7661941 /UG=Hs.8127 KIAA0144 gene product /FL=gb:D63478.1 gb:NM_014847.1 NM_014847 ubiquitin associated protein 2-like UBAP2L 9898 NM_001127320 /// NM_001287815 /// NM_001287816 /// NM_014847 /// XM_005245658 /// XM_005245667 /// XM_005245668 /// XM_005245669 /// XM_005245670 /// XM_005245672 /// XM_005245673 /// XM_005245674 /// XM_006711679 /// XM_006711680 /// XM_006711681 /// XM_006711682 /// XM_006711683 /// XM_006711684 /// XM_006711685 /// XM_006711686 /// XM_006711687 /// XM_006711688 /// XM_006711689 0007339 // binding of sperm to zona pellucida // inferred from mutant phenotype 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 144.80 250.25 6.30 0.00 0.00 -4.44
219283_at 219283_at NM_014158 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014158.1 /DEF=Homo sapiens HSPC067 protein (HSPC067), mRNA. /FEA=mRNA /GEN=HSPC067 /PROD=HSPC067 protein /DB_XREF=gi:7661771 /UG=Hs.279938 HSPC067 protein /FL=gb:AF161552.1 gb:NM_014158.1 NM_014158 C1GALT1-specific chaperone 1 C1GALT1C1 29071 NM_001011551 /// NM_152692 0006493 // protein O-linked glycosylation // inferred from mutant phenotype /// 0016266 // O-glycan processing // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 90.40 147.43 6.30 0.00 0.00 -4.44
201881_s_at 201881_s_at NM_005744 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005744.2 /DEF=Homo sapiens ariadne (Drosophila) homolog, ubiquitin-conjugating enzyme E2-binding protein, 1 (ARIH1), mRNA. /FEA=mRNA /GEN=ARIH1 /PROD=ariadne homolog /DB_XREF=gi:9966762 /UG=Hs.181461 ariadne (Drosophila) homolog, ubiquitin-conjugating enzyme E2-binding protein, 1 /FL=gb:AF072832.1 gb:NM_005744.2 NM_005744 ariadne RBR E3 ubiquitin protein ligase 1 ARIH1 25820 NM_005744 /// XM_006720460 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0000151 // ubiquitin ligase complex // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -66.00 124.33 -6.30 0.00 0.00 -4.44
208025_s_at 208025_s_at NM_003483 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003483.2 /DEF=Homo sapiens high-mobility group (nonhistone chromosomal) protein isoform I-C (HMGIC), mRNA. /FEA=mRNA /GEN=HMGIC /PROD=high-mobility group (nonhistone chromosomal)protein isoform I-C /DB_XREF=gi:6631086 /FL=gb:NM_003483.2 NM_003483 high mobility group AT-hook 2 HMGA2 8091 NM_001015886 /// NM_003483 /// NM_003484 /// XM_005269164 /// XM_006719620 /// XR_245958 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0001837 // epithelial to mesenchymal transition // inferred from mutant phenotype /// 0002062 // chondrocyte differentiation // inferred from direct assay /// 0003131 // mesodermal-endodermal cell signaling // inferred from mutant phenotype /// 0006284 // base-excision repair // inferred from direct assay /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007095 // mitotic G2 DNA damage checkpoint // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009615 // response to virus // inferred from expression pattern /// 0010564 // regulation of cell cycle process // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0031052 // chromosome breakage // inferred from direct assay /// 0031507 // heterochromatin assembly // inferred from direct assay /// 0033144 // negative regulation of intracellular steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035978 // histone H2A-S139 phosphorylation // inferred from direct assay /// 0035986 // senescence-associated heterochromatin focus assembly // inferred from direct assay /// 0035987 // endodermal cell differentiation // inferred from mutant phenotype /// 0035988 // chondrocyte proliferation // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0042769 // DNA damage response, detection of DNA damage // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0043922 // negative regulation by host of viral transcription // inferred from direct assay /// 0045444 // fat cell differentiation // inferred from mutant phenotype /// 0045869 // negative regulation of single stranded viral RNA replication via double stranded DNA intermediate // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0048333 // mesodermal cell differentiation // inferred from mutant phenotype /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // inferred from mutant phenotype /// 0048863 // stem cell differentiation // inferred from expression pattern /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0060123 // regulation of growth hormone secretion // inferred from electronic annotation /// 0060612 // adipose tissue development // inferred from electronic annotation /// 0060613 // fat pad development // inferred from electronic annotation /// 0071158 // positive regulation of cell cycle arrest // inferred from direct assay /// 0090276 // regulation of peptide hormone secretion // inferred from electronic annotation /// 0090402 // oncogene-induced cell senescence // inferred from direct assay /// 2000036 // regulation of stem cell maintenance // inferred from mutant phenotype /// 2000036 // regulation of stem cell maintenance // traceable author statement /// 2000648 // positive regulation of stem cell proliferation // inferred from direct assay /// 2000648 // positive regulation of stem cell proliferation // inferred from mutant phenotype /// 2000679 // positive regulation of transcription regulatory region DNA binding // inferred from direct assay /// 2000685 // positive regulation of cellular response to X-ray // inferred from direct assay /// 2000774 // positive regulation of cellular senescence // inferred from mutant phenotype /// 2001022 // positive regulation of response to DNA damage stimulus // inferred from direct assay /// 2001033 // negative regulation of double-strand break repair via nonhomologous end joining // inferred from direct assay /// 2001038 // regulation of cellular response to drug // inferred from direct assay 0000228 // nuclear chromosome // inferred from sequence or structural similarity /// 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0032993 // protein-DNA complex // inferred from direct assay /// 0035985 // senescence-associated heterochromatin focus // inferred from direct assay /// 0071141 // SMAD protein complex // inferred from direct assay 0000975 // regulatory region DNA binding // inferred from direct assay /// 0000988 // protein binding transcription factor activity // inferred from direct assay /// 0001047 // core promoter binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 0003680 // AT DNA binding // inferred from direct assay /// 0003680 // AT DNA binding // inferred from mutant phenotype /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from direct assay /// 0004677 // DNA-dependent protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008301 // DNA binding, bending // inferred from direct assay /// 0008301 // DNA binding, bending // inferred from mutant phenotype /// 0019899 // enzyme binding // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0035497 // cAMP response element binding // inferred from direct assay /// 0035500 // MH2 domain binding // inferred from direct assay /// 0035501 // MH1 domain binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from physical interaction /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from direct assay /// 0070742 // C2H2 zinc finger domain binding // inferred from mutant phenotype 252.13 503.84 6.29 0.00 0.00 -4.44
204200_s_at 204200_s_at NM_002608 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002608.1 /DEF=Homo sapiens platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) (PDGFB), mRNA. /FEA=mRNA /GEN=PDGFB /PROD=platelet-derived growth factor beta polypeptide(simian sarcoma viral (v-sis) oncogene homolog) /DB_XREF=gi:4505680 /UG=Hs.1976 platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) /FL=gb:M12783.1 gb:NM_002608.1 NM_002608 platelet-derived growth factor beta polypeptide PDGFB 5155 NM_002608 /// NM_033016 0001568 // blood vessel development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0002548 // monocyte chemotaxis // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0003104 // positive regulation of glomerular filtration // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006929 // substrate-dependent cell migration // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009611 // response to wounding // inferred from direct assay /// 0009611 // response to wounding // non-traceable author statement /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010512 // negative regulation of phosphatidylinositol biosynthetic process // inferred from direct assay /// 0010544 // negative regulation of platelet activation // inferred from direct assay /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // inferred from direct assay /// 0016049 // cell growth // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030031 // cell projection assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from mutant phenotype /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0032148 // activation of protein kinase B activity // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0035793 // positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway // inferred from direct assay /// 0038001 // paracrine signaling // inferred from sequence or structural similarity /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from mutant phenotype /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // inferred from direct assay /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045737 // positive regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from direct assay /// 0050921 // positive regulation of chemotaxis // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from direct assay /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071363 // cellular response to growth factor stimulus // inferred from direct assay /// 0071506 // cellular response to mycophenolic acid // inferred from sequence or structural similarity /// 0072126 // positive regulation of glomerular mesangial cell proliferation // inferred from direct assay /// 0072255 // metanephric glomerular mesangial cell development // inferred from sequence or structural similarity /// 0072262 // metanephric glomerular mesangial cell proliferation involved in metanephros development // inferred from electronic annotation /// 0072264 // metanephric glomerular endothelium development // inferred from electronic annotation /// 0072593 // reactive oxygen species metabolic process // inferred from mutant phenotype /// 0090280 // positive regulation of calcium ion import // inferred from direct assay /// 1900127 // positive regulation of hyaluronan biosynthetic process // inferred from direct assay /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from direct assay /// 2000573 // positive regulation of DNA biosynthetic process // inferred from direct assay /// 2000591 // positive regulation of metanephric mesenchymal cell migration // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement 0005161 // platelet-derived growth factor receptor binding // inferred from direct assay /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005161 // platelet-derived growth factor receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0008083 // growth factor activity // inferred from direct assay /// 0016176 // superoxide-generating NADPH oxidase activator activity // inferred from direct assay /// 0042056 // chemoattractant activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0048407 // platelet-derived growth factor binding // inferred from physical interaction 68.38 117.14 6.29 0.00 0.00 -4.44
203764_at 203764_at NM_014750 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014750.1 /DEF=Homo sapiens KIAA0008 gene product (KIAA0008), mRNA. /FEA=mRNA /GEN=KIAA0008 /PROD=KIAA0008 gene product /DB_XREF=gi:7661851 /UG=Hs.77695 KIAA0008 gene product /FL=gb:D13633.1 gb:NM_014750.1 NM_014750 discs, large (Drosophila) homolog-associated protein 5 DLGAP5 9787 NM_001146015 /// NM_014750 0000087 // mitotic M phase // inferred from direct assay /// 0000087 // mitotic M phase // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007079 // mitotic chromosome movement towards spindle pole // non-traceable author statement /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0016311 // dephosphorylation // inferred from direct assay /// 0016311 // dephosphorylation // inferred from sequence or structural similarity /// 0045842 // positive regulation of mitotic metaphase/anaphase transition // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031616 // spindle pole centrosome // inferred from direct assay /// 0031616 // spindle pole centrosome // inferred from sequence or structural similarity 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction 94.42 160.29 6.28 0.00 0.00 -4.44
219062_s_at 219062_s_at NM_017742 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017742.1 /DEF=Homo sapiens hypothetical protein FLJ20281 (FLJ20281), mRNA. /FEA=mRNA /GEN=FLJ20281 /PROD=hypothetical protein FLJ20281 /DB_XREF=gi:8923259 /UG=Hs.18800 hypothetical protein FLJ20281 /FL=gb:NM_017742.1 NM_017742 zinc finger, CCHC domain containing 2 ZCCHC2 54877 NM_017742 /// XM_006722493 /// XM_006722494 /// XR_245462 /// XR_430076 0007154 // cell communication // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 53.40 82.95 6.28 0.00 0.00 -4.44
201456_s_at 201456_s_at AU160695 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU160695 /FEA=EST /DB_XREF=gi:11022216 /DB_XREF=est:AU160695 /CLONE=Y79AA1002240 /UG=Hs.40323 BUB3 (budding uninhibited by benzimidazoles 3, yeast) homolog /FL=gb:BC005138.1 gb:AF047472.1 gb:AF053304.1 gb:AF081496.1 gb:NM_004725.1 AU160695 BUB3 mitotic checkpoint protein BUB3 9184 NM_001007793 /// NM_004725 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051983 // regulation of chromosome segregation // inferred from electronic annotation /// 0071173 // spindle assembly checkpoint // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction 93.10 199.28 6.28 0.00 0.00 -4.44
210087_s_at 210087_s_at AF095727 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF095727.1 /DEF=Homo sapiens myelin protein zero-like protein MPZL1a mRNA, complete cds. /FEA=mRNA /PROD=myelin protein zero-like protein MPZL1a /DB_XREF=gi:6002658 /UG=Hs.287832 myelin protein zero-like 1 /FL=gb:AF087020.1 gb:NM_003953.1 gb:AF092425.1 gb:AF095726.1 gb:AF095727.1 AF095727 myelin protein zero-like 1 MPZL1 9019 NM_001146191 /// NM_003953 /// NM_024569 /// XM_006711614 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -100.70 169.12 -6.28 0.00 0.00 -4.44
212573_at 212573_at AF131747 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF131747.1 /DEF=Homo sapiens clone 24951 mRNA sequence. /FEA=mRNA /DB_XREF=gi:4406562 /UG=Hs.167115 KIAA0830 protein AF131747 endonuclease domain containing 1 ENDOD1 23052 NM_015036 0008152 // metabolic process // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 56.50 93.33 6.28 0.00 0.00 -4.44
212098_at 212098_at AL134724 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL134724 /FEA=EST /DB_XREF=gi:6602911 /DB_XREF=est:DKFZp547P246_s1 /CLONE=DKFZp547P246 /UG=Hs.4988 Homo sapiens clone 24711 mRNA sequence AL134724 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase MGAT5 4249 NM_002410 /// XM_005263666 /// XM_005263668 /// XM_005263669 /// XM_005263670 /// XM_006712534 /// XM_006712535 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // non-traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030144 // alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity // non-traceable author statement 127.45 243.18 6.27 0.00 0.00 -4.44
201997_s_at 201997_s_at NM_015001 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015001.1 /DEF=Homo sapiens KIAA0929 protein Msx2 interacting nuclear target (MINT) homolog (KIAA0929), mRNA. /FEA=mRNA /GEN=KIAA0929 /PROD=KIAA0929 protein Msx2 interacting nuclear target(MINT) homolog /DB_XREF=gi:7657266 /UG=Hs.184245 KIAA0929 protein Msx2 interacting nuclear target (MINT) homolog /FL=gb:NM_015001.1 NM_015001 spen family transcriptional repressor SPEN 23013 NM_015001 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0001191 // RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -108.32 258.04 -6.27 0.00 0.00 -4.44
214004_s_at 214004_s_at AI806207 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI806207 /FEA=EST /DB_XREF=gi:5392773 /DB_XREF=est:wf26d03.x1 /CLONE=IMAGE:2356709 /UG=Hs.79025 KIAA0096 protein AI806207 vestigial-like family member 4 VGLL4 9686 NM_001128219 /// NM_001128220 /// NM_001128221 /// NM_001284390 /// NM_001284391 /// NM_014667 /// XM_006713423 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation -88.28 152.81 -6.26 0.00 0.00 -4.44
204141_at 204141_at NM_001069 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001069.1 /DEF=Homo sapiens tubulin, beta polypeptide (TUBB), mRNA. /FEA=mRNA /GEN=TUBB /PROD=tubulin, beta polypeptide /DB_XREF=gi:4507728 /UG=Hs.179661 tubulin, beta polypeptide /FL=gb:BC001194.1 gb:NM_001069.1 NM_001069 tubulin, beta 2A class IIa TUBB2A 7280 NM_001069 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 112.68 450.46 6.26 0.00 0.00 -4.44
202760_s_at 202760_s_at NM_007203 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007203.1 /DEF=Homo sapiens A kinase (PRKA) anchor protein 2 (AKAP2), mRNA. /FEA=mRNA /GEN=AKAP2 /PROD=A kinase (PRKA) anchor protein 2 /DB_XREF=gi:6005708 /UG=Hs.42322 A kinase (PRKA) anchor protein 2 /FL=gb:AB023137.1 gb:NM_007203.1 NM_007203 A kinase (PRKA) anchor protein 2 /// PALM2-AKAP2 readthrough AKAP2 /// PALM2-AKAP2 11217 /// 445815 NM_001004065 /// NM_001136562 /// NM_001198656 /// NM_007203 /// NM_147150 0008360 // regulation of cell shape // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0016301 // kinase activity // inferred from electronic annotation /// 0019899 // enzyme binding // non-traceable author statement -347.30 724.40 -6.26 0.00 0.00 -4.44
204710_s_at 204710_s_at NM_016003 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016003.1 /DEF=Homo sapiens CGI-50 protein (LOC51623), mRNA. /FEA=mRNA /GEN=LOC51623 /PROD=CGI-50 protein /DB_XREF=gi:7706293 /UG=Hs.279850 CGI-50 protein /FL=gb:AF151808.1 gb:NM_016003.1 NM_016003 WD repeat domain, phosphoinositide interacting 2 WIPI2 26100 NM_001033518 /// NM_001033519 /// NM_001033520 /// NM_001278299 /// NM_015610 /// NM_016003 /// XM_006715685 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0000046 // autophagic vacuole fusion // inferred from mutant phenotype /// 0006914 // autophagy // inferred from electronic annotation 0000421 // autophagic vacuole membrane // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from direct assay /// 0080025 // phosphatidylinositol-3,5-bisphosphate binding // inferred from direct assay -105.33 376.04 -6.26 0.00 0.00 -4.44
213410_at 213410_at AL050102 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050102.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586F1019 (from clone DKFZp586F1019); partial cds. /FEA=mRNA /GEN=DKFZp586F1019 /PROD=hypothetical protein /DB_XREF=gi:4884131 /UG=Hs.227209 DKFZP586F1019 protein AL050102 erythroid differentiation regulatory factor 1 EDRF1 26098 NM_001202438 /// NM_015608 /// NM_030897 /// NR_110857 /// NR_110858 /// NR_110859 /// XM_005269687 /// XM_005269688 /// XM_005269689 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 56.13 45.86 6.25 0.00 0.00 -4.44
208647_at 208647_at AA872727 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA872727 /FEA=EST /DB_XREF=gi:2968849 /DB_XREF=est:ob11c12.s1 /CLONE=IMAGE:1323382 /UG=Hs.48876 farnesyl-diphosphate farnesyltransferase 1 /FL=gb:L06070.1 gb:L06105.1 gb:NM_004462.1 AA872727 farnesyl-diphosphate farnesyltransferase 1 FDFT1 2222 NM_001287742 /// NM_001287743 /// NM_001287744 /// NM_001287745 /// NM_001287747 /// NM_001287748 /// NM_001287749 /// NM_001287750 /// NM_001287751 /// NM_001287756 /// NM_004462 /// XM_006716247 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045338 // farnesyl diphosphate metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from electronic annotation /// 0051996 // squalene synthase activity // inferred from electronic annotation 199.03 303.29 6.25 0.00 0.00 -4.44
211988_at 211988_at BG289800 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG289800 /FEA=EST /DB_XREF=gi:13045953 /DB_XREF=est:602385095F1 /CLONE=IMAGE:4514135 /UG=Hs.332848 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 /FL=gb:NM_003079.1 BG289800 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 SMARCE1 6605 NM_003079 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0000228 // nuclear chromosome // traceable author statement /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // traceable author statement /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008080 // N-acetyltransferase activity // inferred from direct assay /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction 104.22 250.31 6.25 0.00 0.00 -4.44
202583_s_at 202583_s_at NM_005493 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005493.1 /DEF=Homo sapiens RAN binding protein 9 (RANBP9), mRNA. /FEA=mRNA /GEN=RANBP9 /PROD=RAN binding protein 9 /DB_XREF=gi:4885570 /UG=Hs.279886 RAN binding protein 9 /FL=gb:AF306510.1 gb:AB008515.1 gb:NM_005493.1 NM_005493 RAN binding protein 9 RANBP9 10048 NM_005493 /// XM_006714945 0006461 // protein complex assembly // traceable author statement /// 0007020 // microtubule nucleation // non-traceable author statement /// 0007411 // axon guidance // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005875 // microtubule associated complex // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction -119.02 240.61 -6.25 0.00 0.00 -4.44
209379_s_at 209379_s_at AF241785 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF241785.1 /DEF=Homo sapiens NPD012 (NPD012) mRNA, complete cds. /FEA=mRNA /GEN=NPD012 /PROD=NPD012 /DB_XREF=gi:12005486 /UG=Hs.81897 KIAA1128 protein /FL=gb:AF241785.1 AF241785 coiled-coil serine-rich protein 2 CCSER2 54462 NM_001284240 /// NM_001284241 /// NM_001284242 /// NM_001284243 /// NM_018999 /// XM_005269905 /// XM_005269906 /// XM_005269908 /// XM_006717894 /// XM_006717895 0001578 // microtubule bundle formation // inferred from electronic annotation 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0008017 // microtubule binding // inferred from electronic annotation 63.68 99.69 6.24 0.00 0.00 -4.44
218016_s_at 218016_s_at NM_018119 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018119.1 /DEF=Homo sapiens hypothetical protein FLJ10509 (FLJ10509), mRNA. /FEA=mRNA /GEN=FLJ10509 /PROD=hypothetical protein FLJ10509 /DB_XREF=gi:8922476 /UG=Hs.274319 hypothetical protein FLJ10509 /FL=gb:BC000285.1 gb:NM_018119.1 NM_018119 DNA-directed RNA polymerase III subunit RPC5-like /// polymerase (RNA) III (DNA directed) polypeptide E (80kD) LOC101060521 /// POLR3E 55718 /// 101060521 NM_001258033 /// NM_001258034 /// NM_001258035 /// NM_001258036 /// NM_018119 /// NR_047581 /// XM_005276498 /// XM_006721063 /// XM_006726613 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006385 // transcription elongation from RNA polymerase III promoter // traceable author statement /// 0006386 // termination of RNA polymerase III transcription // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005666 // DNA-directed RNA polymerase III complex // not recorded /// 0005666 // DNA-directed RNA polymerase III complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0001056 // RNA polymerase III activity // not recorded /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 55.23 91.66 6.24 0.00 0.00 -4.44
210916_s_at 210916_s_at AF098641 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF098641.1 /DEF=Homo sapiens CD44 isoform RC (CD44) mRNA, complete cds. /FEA=mRNA /GEN=CD44 /PROD=CD44 isoform RC /DB_XREF=gi:3832517 /UG=Hs.306278 Homo sapiens CD44 isoform RC (CD44) mRNA, complete cds /FL=gb:AF098641.1 AF098641 CD44 molecule (Indian blood group) CD44 960 NM_000610 /// NM_001001389 /// NM_001001390 /// NM_001001391 /// NM_001001392 /// NM_001202555 /// NM_001202556 /// NM_001202557 /// XM_005253231 /// XM_005253232 /// XM_005253233 /// XM_005253234 /// XM_005253235 /// XM_005253238 /// XM_005253239 /// XM_005253240 /// XM_006718388 /// XM_006718389 /// XM_006718390 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0002246 // wound healing involved in inflammatory response // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // non-traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // inferred from direct assay /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034116 // positive regulation of heterotypic cell-cell adhesion // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0051216 // cartilage development // inferred from expression pattern /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070487 // monocyte aggregation // inferred from mutant phenotype /// 1900625 // positive regulation of monocyte aggregation // inferred from mutant phenotype /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004415 // hyalurononglucosaminidase activity // inferred from direct assay /// 0004888 // transmembrane signaling receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0005540 // hyaluronic acid binding // inferred from direct assay /// 0005540 // hyaluronic acid binding // non-traceable author statement -54.25 47.27 -6.24 0.00 0.00 -4.44
204115_at 204115_at NM_004126 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004126.1 /DEF=Homo sapiens guanine nucleotide binding protein 11 (GNG11), mRNA. /FEA=mRNA /GEN=GNG11 /PROD=guanine nucleotide binding protein 11 /DB_XREF=gi:4758447 /UG=Hs.83381 guanine nucleotide binding protein 11 /FL=gb:NM_004126.1 gb:U31384.1 NM_004126 guanine nucleotide binding protein (G protein), gamma 11 GNG11 2791 NM_004126 0006112 // energy reserve metabolic process // traceable author statement /// 0006184 // GTP catabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation 523.65 1094.47 6.24 0.00 0.00 -4.44
202269_x_at 202269_x_at BC002666 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002666.1 /DEF=Homo sapiens, guanylate binding protein 1, interferon-inducible, 67kD, clone MGC:3949, mRNA, complete cds. /FEA=mRNA /PROD=guanylate binding protein 1,interferon-inducible, 67kD /DB_XREF=gi:12803662 /UG=Hs.62661 guanylate binding protein 1, interferon-inducible, 67kD /FL=gb:BC002666.1 gb:M55542.1 gb:NM_002053.1 BC002666 guanylate binding protein 1, interferon-inducible GBP1 2633 NM_002053 /// XM_006710573 0002376 // immune system process // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction -72.50 71.22 -6.23 0.00 0.00 -4.44
200892_s_at 200892_s_at BC000451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000451.1 /DEF=Homo sapiens, splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10, clone MGC:8454, mRNA, complete cds. /FEA=mRNA /PROD=splicing factor, arginineserine-rich(transformer 2 Drosophila homolog) 10 /DB_XREF=gi:12653362 /UG=Hs.30035 splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 /FL=gb:BC000160.1 gb:BC000451.1 gb:U61267.1 gb:U68063.1 gb:NM_004593.1 BC000451 transformer 2 beta homolog (Drosophila) TRA2B 6434 NM_001243879 /// NM_004593 /// XM_005247703 /// XM_006713724 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0048026 // positive regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 146.43 443.84 6.22 0.00 0.00 -4.44
212498_at 212498_at AF056433 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF056433.1 /DEF=Homo sapiens clone FBD3 Cri-du-chat critical region mRNA. /FEA=mRNA /DB_XREF=gi:3044151 /UG=Hs.8078 Homo sapiens clone FBD3 Cri-du-chat critical region mRNA AF056433 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase MARCH6 10299 NM_001270660 /// NM_001270661 /// NM_005885 0016567 // protein ubiquitination // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0031624 // ubiquitin conjugating enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 123.97 172.31 6.21 0.00 0.00 -4.44
204348_s_at 204348_s_at NM_013410 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013410.1 /DEF=Homo sapiens adenylate kinase 3 (AK3), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=AK3 /PROD=adenylate kinase 3 /DB_XREF=gi:8051578 /UG=Hs.274691 adenylate kinase 3 /FL=gb:NM_013410.1 NM_013410 adenylate kinase 4 /// adenylate kinase 4, mitochondrial-like AK4 /// LOC100507855 205 /// 100507855 NM_001005353 /// NM_013410 /// NM_203464 /// XM_003119530 0001889 // liver development // inferred from electronic annotation /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006165 // nucleoside diphosphate phosphorylation // inferred from direct assay /// 0006172 // ADP biosynthetic process // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0009142 // nucleoside triphosphate biosynthetic process // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018885 // carbon tetrachloride metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043643 // tetracycline metabolic process // inferred from electronic annotation /// 0046033 // AMP metabolic process // inferred from direct assay /// 0046034 // ATP metabolic process // inferred from direct assay /// 0046039 // GTP metabolic process // inferred from direct assay /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from direct assay /// 0004550 // nucleoside diphosphate kinase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase-containing compound kinase activity // inferred from electronic annotation /// 0046899 // nucleoside triphosphate adenylate kinase activity // inferred from direct assay -136.48 131.96 -6.21 0.00 0.00 -4.44
221235_s_at 221235_s_at NM_030825 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030825.1 /DEF=Homo sapiens hypothetical protein FLJ22294 (FLJ22294), mRNA. /FEA=mRNA /GEN=FLJ22294 /PROD=hypothetical protein FLJ22294 /DB_XREF=gi:13540497 /FL=gb:NM_030825.1 NM_030825 transforming growth factor, beta receptor associated protein 1 TGFBRAP1 9392 NM_001142621 /// NM_004257 /// XM_006712860 /// XM_006712861 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005160 // transforming growth factor beta receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046332 // SMAD binding // inferred from direct assay 66.52 145.41 6.21 0.00 0.00 -4.44
200753_x_at 200753_x_at BE866585 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE866585 /FEA=EST /DB_XREF=gi:10315361 /DB_XREF=est:601678773F1 /CLONE=IMAGE:3961243 /UG=Hs.73965 splicing factor, arginineserine-rich 2 /FL=gb:BC000339.1 gb:BC001303.1 gb:M90104.1 gb:NM_003016.1 BE866585 microRNA 636 /// serine/arginine-rich splicing factor 2 MIR636 /// SRSF2 6427 /// 693221 NM_001195427 /// NM_003016 /// NR_030366 /// NR_036608 /// XR_429913 /// XR_429914 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 2001141 // regulation of RNA biosynthetic process // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016605 // PML body // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 162.38 297.51 6.21 0.00 0.00 -4.44
217886_at 217886_at BF213575 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF213575 /FEA=EST /DB_XREF=gi:11107161 /DB_XREF=est:601845379F1 /CLONE=IMAGE:4070610 /UG=Hs.79095 epidermal growth factor receptor pathway substrate 15 /FL=gb:NM_001981.1 gb:U07707.1 BF213575 epidermal growth factor receptor pathway substrate 15 EPS15 2060 NM_001159969 /// NM_001981 /// XM_005270618 /// XM_006710446 0006810 // transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016050 // vesicle organization // traceable author statement /// 0032456 // endocytic recycling // inferred by curator /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048268 // clathrin coat assembly // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005905 // coated pit // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0060170 // ciliary membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 63.45 86.65 6.20 0.00 0.00 -4.44
217915_s_at 217915_s_at NM_016304 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016304.1 /DEF=Homo sapiens 60S ribosomal protein L30 isolog (LOC51187), mRNA. /FEA=mRNA /GEN=LOC51187 /PROD=60S ribosomal protein L30 isolog /DB_XREF=gi:10047101 /UG=Hs.284162 60S ribosomal protein L30 isolog /FL=gb:NM_016304.1 gb:AF060926.1 gb:AF212226.1 gb:BC005344.1 gb:AF201949.1 gb:AF165521.1 NM_016304 ribosomal L24 domain containing 1 RSL24D1 51187 NM_016304 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation -335.90 551.88 -6.20 0.00 0.00 -4.44
218364_at 218364_at NM_017724 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017724.1 /DEF=Homo sapiens leucine rich repeat (in FLII) interacting protein 2 (LRRFIP2), mRNA. /FEA=mRNA /GEN=LRRFIP2 /PROD=leucine rich repeat (in FLII) interactingprotein 2 /DB_XREF=gi:8923223 /UG=Hs.57672 leucine rich repeat (in FLII) interacting protein 2 /FL=gb:NM_017724.1 NM_017724 leucine rich repeat (in FLII) interacting protein 2 LRRFIP2 9209 NM_001134369 /// NM_001282691 /// NM_006309 /// NM_017724 /// XM_005265538 /// XM_005265539 /// XM_005265540 /// XM_005265550 /// XM_005265551 /// XM_005265553 /// XM_005265554 /// XM_005265555 /// XM_005265556 /// XM_005265557 /// XM_006713385 /// XM_006713386 /// XM_006713387 /// XM_006713388 /// XM_006713389 /// XM_006713390 /// XM_006713391 /// XM_006713392 /// XM_006713393 /// XM_006713394 /// XM_006713395 /// XM_006713396 /// XM_006713397 /// XM_006713398 /// XM_006713399 /// XM_006713400 /// XM_006713401 /// XM_006713402 /// XM_006713403 /// XM_006713404 0016055 // Wnt signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030275 // LRR domain binding // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation -55.75 103.50 -6.19 0.00 0.00 -4.44
210260_s_at 210260_s_at BC005352 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005352.1 /DEF=Homo sapiens, TNF-induced protein, clone MGC:12451, mRNA, complete cds. /FEA=mRNA /PROD=TNF-induced protein /DB_XREF=gi:13529163 /UG=Hs.17839 TNF-induced protein /FL=gb:BC005352.1 gb:AF099935.1 BC005352 tumor necrosis factor, alpha-induced protein 8 TNFAIP8 25816 NM_001077654 /// NM_001286813 /// NM_001286814 /// NM_001286815 /// NM_001286817 /// NM_014350 /// XM_006714584 0006915 // apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from mutant phenotype -265.63 178.64 -6.18 0.00 0.00 -4.44
202074_s_at 202074_s_at NM_021980 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021980.1 /DEF=Homo sapiens tumor necrosis factor alpha-inducible cellular protein containing leucine zipper domains; Huntingtin interacting protein L; transcrption factor IIIA-interacting protein (FIP2), mRNA. /FEA=mRNA /GEN=FIP2 /PROD=tumor necrosis factor alpha-inducible cellularprotein containing leucine zipper domains; Huntingtininteracting protein L; transcrption factorIIIA-interacting protein /DB_XREF=gi:11415041 /UG=Hs.278898 tumor necrosis factor alpha-inducible cellular protein containing leucine zipper domains; Huntingtin interacting protein L; transcrption factor IIIA-interacting protein /FL=gb:NM_021980.1 NM_021980 optineurin OPTN 10133 NM_001008211 /// NM_001008212 /// NM_001008213 /// NM_021980 /// XM_005252336 /// XM_005252337 /// XM_005252338 0000042 // protein targeting to Golgi // inferred from mutant phenotype /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001920 // negative regulation of receptor recycling // inferred from mutant phenotype /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0007165 // signal transduction // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0016236 // macroautophagy // inferred from direct assay /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0043001 // Golgi to plasma membrane protein transport // inferred from mutant phenotype /// 0050829 // defense response to Gram-negative bacterium // inferred from mutant phenotype /// 0090161 // Golgi ribbon formation // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0031593 // polyubiquitin binding // inferred from direct assay -317.80 354.93 -6.16 0.00 0.00 -4.44
204908_s_at 204908_s_at NM_005178 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005178.1 /DEF=Homo sapiens B-cell CLLlymphoma 3 (BCL3), mRNA. /FEA=mRNA /GEN=BCL3 /PROD=B-cell CLLlymphoma 3 /DB_XREF=gi:4885086 /UG=Hs.31210 B-cell CLLlymphoma 3 /FL=gb:M31732.1 gb:NM_005178.1 NM_005178 B-cell CLL/lymphoma 3 /// microRNA 8085 BCL3 /// MIR8085 602 /// 102465879 NM_005178 /// NR_107052 /// XM_005259129 0000060 // protein import into nucleus, translocation // inferred from mutant phenotype /// 0002268 // follicular dendritic cell differentiation // inferred from electronic annotation /// 0002315 // marginal zone B cell differentiation // inferred from electronic annotation /// 0002455 // humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002467 // germinal center formation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0009615 // response to virus // inferred from direct assay /// 0010225 // response to UV-C // inferred from direct assay /// 0019730 // antimicrobial humoral response // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0042345 // regulation of NF-kappaB import into nucleus // inferred from expression pattern /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from mutant phenotype /// 0042832 // defense response to protozoan // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045064 // T-helper 2 cell differentiation // inferred from electronic annotation /// 0045082 // positive regulation of interleukin-10 biosynthetic process // inferred from electronic annotation /// 0045415 // negative regulation of interleukin-8 biosynthetic process // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048536 // spleen development // inferred from electronic annotation /// 0051101 // regulation of DNA binding // inferred from expression pattern /// 0051457 // maintenance of protein location in nucleus // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0032996 // Bcl3-Bcl10 complex // inferred from direct assay /// 0033257 // Bcl3/NF-kappaB2 complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045171 // intercellular bridge // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0030674 // protein binding, bridging // traceable author statement -50.15 67.58 -6.16 0.00 0.00 -4.44
204119_s_at 204119_s_at U90339 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U90339.1 /DEF=Human adenosine kinase short form mRNA, complete cds. /FEA=mRNA /PROD=adenosine kinase short form /DB_XREF=gi:1906010 /UG=Hs.94382 adenosine kinase /FL=gb:U50196.1 gb:BC003568.1 gb:U90339.1 gb:NM_001123.1 U90339 adenosine kinase ADK 132 NM_001123 /// NM_001202449 /// NM_001202450 /// NM_006721 /// XM_005269538 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006166 // purine ribonucleoside salvage // inferred from electronic annotation /// 0006167 // AMP biosynthetic process // inferred from electronic annotation /// 0006175 // dATP biosynthetic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0010613 // positive regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0043101 // purine-containing compound salvage // traceable author statement /// 0044209 // AMP salvage // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0044342 // type B pancreatic cell proliferation // inferred from electronic annotation /// 0046085 // adenosine metabolic process // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004001 // adenosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -113.28 341.61 -6.15 0.00 0.00 -4.44
212082_s_at 212082_s_at BE734356 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE734356 /FEA=EST /DB_XREF=gi:10148348 /DB_XREF=est:601565603F1 /CLONE=IMAGE:3840385 /UG=Hs.77385 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle BE734356 myosin, light chain 6, alkali, smooth muscle and non-muscle MYL6 4637 NM_021019 /// NM_079423 /// NM_079425 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007519 // skeletal muscle tissue development // traceable author statement /// 0008152 // metabolic process // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030049 // muscle filament sliding // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016459 // myosin complex // traceable author statement /// 0016461 // unconventional myosin complex // traceable author statement /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071564 // npBAF complex // inferred from electronic annotation /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from electronic annotation /// 0071565 // nBAF complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003774 // motor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // inferred from direct assay /// 0030898 // actin-dependent ATPase activity // inferred from sequence or structural similarity /// 0031492 // nucleosomal DNA binding // inferred from direct assay 464.62 2246.34 6.15 0.00 0.00 -4.44
201362_at 201362_at AF205218 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF205218.1 /DEF=Homo sapiens NS1-binding protein-like protein mRNA, complete cds. /FEA=mRNA /PROD=NS1-binding protein-like protein /DB_XREF=gi:12003206 /UG=Hs.197298 NS1-binding protein /FL=gb:AF205218.1 gb:AB020657.1 gb:AF161553.1 gb:NM_016389.1 AF205218 influenza virus NS1A binding protein IVNS1ABP 10625 NM_006469 /// NM_016389 /// XM_005244843 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005667 // transcription factor complex // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 65.43 75.21 6.14 0.00 0.00 -4.44
216342_x_at 216342_x_at AL121916 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL121916 /DEF=Human DNA sequence from clone RP1-189G13 on chromosome 20. Contains an RPL7A (60S ribosomal protein L7A) (SURF3) pseudogene, part of an RPS4 (40S ribosomal protein S4) pseudogene, ESTs, STSs and GSSs /FEA=CDS_2 /DB_XREF=gi:7406639 /UG=Hs.283838 Human DNA sequence from clone RP1-189G13 on chromosome 20. Contains an RPL7A (60S ribosomal protein L7A) (SURF3) pseudogene, part of an RPS4 (40S ribosomal protein S4) pseudogene, ESTs, STSs and GSSs AL121916 ribosomal protein S4X pseudogene 2 /// RPS4XP2 /// RPS4XP2 -374.50 1999.70 -6.14 0.00 0.00 -4.44
211976_at 211976_at AK026168 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026168.1 /DEF=Homo sapiens cDNA: FLJ22515 fis, clone HRC12122, highly similar to AF052101 Homo sapiens clone 23872 mRNA sequence. /FEA=mRNA /DB_XREF=gi:10438931 /UG=Hs.188882 Homo sapiens cDNA: FLJ21862 fis, clone HEP02321, highly similar to AF052101 Homo sapiens clone 23872 mRNA sequence AK026168 nudix (nucleoside diphosphate linked moiety X)-type motif 3 NUDT3 11165 NM_006703 0007267 // cell-cell signaling // traceable author statement /// 0015961 // diadenosine polyphosphate catabolic process // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation 98.90 188.93 6.14 0.00 0.00 -4.44
218276_s_at 218276_s_at NM_021818 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021818.1 /DEF=Homo sapiens WW Domain-Containing Gene (WW45), mRNA. /FEA=mRNA /GEN=WW45 /PROD=WW Domain-Containing Gene /DB_XREF=gi:11141888 /UG=Hs.288906 WW Domain-Containing Gene /FL=gb:NM_021818.1 NM_021818 salvador family WW domain containing protein 1 SAV1 60485 NM_021818 0001942 // hair follicle development // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0035329 // hippo signaling // inferred from sequence or structural similarity /// 0035329 // hippo signaling // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0046620 // regulation of organ growth // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060487 // lung epithelial cell differentiation // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // inferred from electronic annotation /// 2000036 // regulation of stem cell maintenance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction -72.40 75.02 -6.14 0.00 0.00 -4.44
201196_s_at 201196_s_at M21154 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M21154.1 /DEF=Human S-adenosylmethionine decarboxylase mRNA, complete cds. /FEA=mRNA /GEN=AMD2 /DB_XREF=gi:178517 /UG=Hs.262476 S-adenosylmethionine decarboxylase 1 /FL=gb:BC000171.2 gb:M21154.1 gb:NM_001634.3 M21154 adenosylmethionine decarboxylase 1 AMD1 262 NM_001033059 /// NM_001287214 /// NM_001287215 /// NM_001287216 /// NM_001634 /// NR_109768 0006557 // S-adenosylmethioninamine biosynthetic process // inferred from electronic annotation /// 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0006597 // spermine biosynthetic process // inferred from electronic annotation /// 0008295 // spermidine biosynthetic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0004014 // adenosylmethionine decarboxylase activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 73.93 146.19 6.14 0.00 0.00 -4.44
204372_s_at 204372_s_at NM_003685 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003685.1 /DEF=Homo sapiens KH-type splicing regulatory protein (FUSE binding protein 2) (KHSRP), mRNA. /FEA=mRNA /GEN=KHSRP /PROD=KH-type splicing regulatory protein (FUSEbinding protein 2) /DB_XREF=gi:4504864 /UG=Hs.91142 KH-type splicing regulatory protein (FUSE binding protein 2) /FL=gb:U94832.1 gb:NM_003685.1 NM_003685 KH-type splicing regulatory protein KHSRP 8570 NM_003685 /// XM_005259668 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 90.53 297.29 6.13 0.00 0.00 -4.44
207812_s_at 207812_s_at NM_015530 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015530.1 /DEF=Homo sapiens DKFZP434D156 protein (DKFZP434D156), mRNA. /FEA=mRNA /GEN=DKFZP434D156 /PROD=DKFZP434D156 protein /DB_XREF=gi:7661569 /UG=Hs.6880 DKFZP434D156 protein /FL=gb:NM_015530.1 NM_015530 golgi reassembly stacking protein 2, 55kDa GORASP2 26003 NM_001201428 /// NM_015530 /// XM_006712408 0000278 // mitotic cell cycle // traceable author statement /// 0006996 // organelle organization // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction 86.47 344.81 6.13 0.00 0.00 -4.44
210594_x_at 210594_x_at AF239756 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF239756.1 /DEF=Homo sapiens PZR1b mRNA, complete cds. /FEA=mRNA /PROD=PZR1b /DB_XREF=gi:7542562 /UG=Hs.287832 myelin protein zero-like 1 /FL=gb:AF239756.1 AF239756 myelin protein zero-like 1 MPZL1 9019 NM_001146191 /// NM_003953 /// NM_024569 /// XM_006711614 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -116.40 171.95 -6.13 0.00 0.00 -4.44
201010_s_at 201010_s_at NM_006472 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006472.1 /DEF=Homo sapiens upregulated by 1,25-dihydroxyvitamin D-3 (VDUP1), mRNA. /FEA=mRNA /GEN=VDUP1 /PROD=upregulated by 1,25-dihydroxyvitamin D-3 /DB_XREF=gi:5454161 /UG=Hs.179526 upregulated by 1,25-dihydroxyvitamin D-3 /FL=gb:NM_006472.1 gb:S73591.1 NM_006472 thioredoxin interacting protein TXNIP 10628 NM_006472 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051782 // negative regulation of cell division // inferred from direct assay /// 0071228 // cellular response to tumor cell // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -226.38 180.29 -6.12 0.00 0.00 -4.44
37384_at 37384_at D86995 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. D13640:Human mRNA for KIAA0015 gene, complete cds /cds=(106,1470) /gb=D13640 /gi=286006 /ug=Hs.77961 /len=5134 D86995 protein phosphatase, Mg2+/Mn2+ dependent, 1F PPM1F 9647 NM_014634 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016576 // histone dephosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0035690 // cellular response to drug // inferred from direct assay /// 0035970 // peptidyl-threonine dephosphorylation // inferred from direct assay /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0044387 // negative regulation of protein kinase activity by regulation of protein phosphorylation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045927 // positive regulation of growth // inferred from mutant phenotype /// 0050921 // positive regulation of chemotaxis // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0051894 // positive regulation of focal adhesion assembly // inferred from mutant phenotype /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay 0005829 // cytosol // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from direct assay /// 0033192 // calmodulin-dependent protein phosphatase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 113.85 192.85 6.12 0.00 0.00 -4.44
203278_s_at 203278_s_at NM_016621 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016621.1 /DEF=Homo sapiens hypothetical protein (LOC51317), mRNA. /FEA=mRNA /GEN=LOC51317 /PROD=hypothetical protein /DB_XREF=gi:7706159 /UG=Hs.106826 KIAA1696 protein /FL=gb:AF208848.1 gb:NM_016621.1 NM_016621 PHD finger protein 21A PHF21A 51317 NM_001101802 /// NM_016621 /// XM_005252962 /// XM_005252963 /// XM_005252964 /// XM_005252965 /// XM_005252967 /// XM_005252970 /// XM_006718247 /// XM_006718248 /// XR_242810 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001967 // suckling behavior // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -81.02 75.51 -6.11 0.00 0.00 -4.44
218573_at 218573_at NM_014061 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014061.1 /DEF=Homo sapiens APR-1 protein (APR-1), mRNA. /FEA=mRNA /GEN=APR-1 /PROD=APR-1 protein /DB_XREF=gi:7661529 /UG=Hs.279819 APR-1 protein /FL=gb:AF320912.1 gb:AF143235.3 gb:NM_014061.1 NM_014061 melanoma antigen family H, 1 MAGEH1 28986 NM_014061 0006915 // apoptotic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 65.22 81.26 6.11 0.00 0.00 -4.44
203987_at 203987_at NM_003506 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003506.1 /DEF=Homo sapiens frizzled (Drosophila) homolog 6 (FZD6), mRNA. /FEA=mRNA /GEN=FZD6 /PROD=frizzled 6 /DB_XREF=gi:4503830 /UG=Hs.114218 frizzled (Drosophila) homolog 6 /FL=gb:AB012911.1 gb:NM_003506.1 gb:AF072873.1 NM_003506 frizzled class receptor 6 FZD6 8323 NM_001164615 /// NM_001164616 /// NM_003506 /// XR_428385 0001525 // angiogenesis // not recorded /// 0001736 // establishment of planar polarity // not recorded /// 0001843 // neural tube closure // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007199 // G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0008406 // gonad development // not recorded /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0033278 // cell proliferation in midbrain // not recorded /// 0035567 // non-canonical Wnt signaling pathway // inferred from direct assay /// 0042472 // inner ear morphogenesis // not recorded /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060071 // Wnt signaling pathway, planar cell polarity pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016327 // apicolateral plasma membrane // not recorded /// 0032589 // neuron projection membrane // not recorded /// 0045177 // apical part of cell // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from sequence or structural similarity /// 0030165 // PDZ domain binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042813 // Wnt-activated receptor activity // inferred from direct assay -304.05 420.73 -6.10 0.00 0.00 -4.44
206085_s_at 206085_s_at NM_001902 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001902.1 /DEF=Homo sapiens cystathionase (cystathionine gamma-lyase) (CTH), mRNA. /FEA=mRNA /GEN=CTH /PROD=cystathionase (cystathionine gamma-lyase) /DB_XREF=gi:4503124 /UG=Hs.19904 cystathionase (cystathionine gamma-lyase) /FL=gb:NM_001902.1 NM_001902 cystathionine gamma-lyase CTH 1491 NM_001190463 /// NM_001902 /// NM_153742 /// XM_005270509 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0000098 // sulfur amino acid catabolic process // traceable author statement /// 0006534 // cysteine metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0018272 // protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine // inferred from direct assay /// 0019344 // cysteine biosynthetic process // inferred from direct assay /// 0019344 // cysteine biosynthetic process // inferred from electronic annotation /// 0019346 // transsulfuration // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0044524 // protein sulfhydration // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from physical interaction /// 0070814 // hydrogen sulfide biosynthetic process // inferred from direct assay /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004123 // cystathionine gamma-lyase activity // inferred from direct assay /// 0004123 // cystathionine gamma-lyase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016846 // carbon-sulfur lyase activity // traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0044540 // L-cystine L-cysteine-lyase (deaminating) // inferred from mutant phenotype /// 0047982 // homocysteine desulfhydrase activity // traceable author statement /// 0080146 // L-cysteine desulfhydrase activity // traceable author statement -56.30 40.27 -6.10 0.00 0.00 -4.44
213032_at 213032_at AI186739 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI186739 /FEA=EST /DB_XREF=gi:3737377 /DB_XREF=est:qe79c01.x1 /CLONE=IMAGE:1745184 /UG=Hs.326416 Homo sapiens mRNA; cDNA DKFZp564H1916 (from clone DKFZp564H1916) AI186739 nuclear factor I/B NFIB 4781 NM_001190737 /// NM_001190738 /// NM_001282787 /// NM_005596 /// XM_005251467 /// XM_005251468 /// XM_005251469 /// XM_005251470 /// XM_005251471 /// XM_006716773 /// XM_006716774 /// XM_006716775 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002062 // chondrocyte differentiation // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from sequence or structural similarity /// 0021740 // principal sensory nucleus of trigeminal nerve development // inferred from sequence or structural similarity /// 0021960 // anterior commissure morphogenesis // inferred from sequence or structural similarity /// 0030324 // lung development // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060486 // Clara cell differentiation // inferred from sequence or structural similarity /// 0060509 // Type I pneumocyte differentiation // inferred from sequence or structural similarity /// 0060510 // Type II pneumocyte differentiation // inferred from sequence or structural similarity /// 0061141 // lung ciliated cell differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 2000791 // negative regulation of mesenchymal cell proliferation involved in lung development // inferred from sequence or structural similarity /// 2000795 // negative regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0044300 // cerebellar mossy fiber // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 97.97 138.56 6.10 0.00 0.00 -4.44
220942_x_at 220942_x_at NM_014367 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014367.1 /DEF=Homo sapiens hypothetical protein, estradiol-induced (E2IG5), mRNA. /FEA=mRNA /GEN=E2IG5 /PROD=hypothetical protein, estradiol-induced /DB_XREF=gi:7657049 /UG=Hs.5243 hypothetical protein, estradiol-induced /FL=gb:AF191020.1 gb:NM_014367.1 NM_014367 family with sequence similarity 162, member A FAM162A 26355 NM_014367 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006927 // transformed cell apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -240.37 391.56 -6.10 0.00 0.00 -4.44
219649_at 219649_at NM_013339 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013339.1 /DEF=Homo sapiens dolichyl-P-Glc:Man9GlcNAc2-PP-dolichylglucosyltransferase (ALG6), mRNA. /FEA=mRNA /GEN=ALG6 /PROD=dolichyl-P-Glc:Man9GlcNAc2-PP-dolichylglucosyltransferase /DB_XREF=gi:7019324 /UG=Hs.80042 dolichyl-P-Glc:Man9GlcNAc2-PP-dolichylglucosyltransferase /FL=gb:AF063604.1 gb:BC001253.1 gb:AF102851.1 gb:NM_013339.1 NM_013339 ALG6, alpha-1,3-glucosyltransferase ALG6 29929 NM_013339 /// XM_005270788 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // inferred from direct assay /// 0006487 // protein N-linked glycosylation // inferred from genetic interaction /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046527 // glucosyltransferase activity // inferred from direct assay 87.10 154.32 6.10 0.00 0.00 -4.44
202741_at 202741_at AA130247 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA130247 /FEA=EST /DB_XREF=gi:1691251 /DB_XREF=est:zl38g12.s1 /CLONE=IMAGE:504262 /UG=Hs.87773 protein kinase, cAMP-dependent, catalytic, beta /FL=gb:M34181.1 gb:NM_002731.1 AA130247 protein kinase, cAMP-dependent, catalytic, beta PRKACB 5567 NM_001242857 /// NM_001242858 /// NM_001242859 /// NM_001242860 /// NM_001242861 /// NM_001242862 /// NM_002731 /// NM_182948 /// NM_207578 /// XM_005271015 /// XM_005271016 /// XM_005271017 /// XM_005271018 /// XM_005271019 /// XM_005271020 /// XM_005271021 /// XM_005271022 /// XM_005271023 /// XM_006710758 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // traceable author statement /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0051447 // negative regulation of meiotic cell cycle // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0097338 // response to clozapine // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005952 // cAMP-dependent protein kinase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004691 // cAMP-dependent protein kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay 250.23 494.99 6.10 0.00 0.00 -4.44
218132_s_at 218132_s_at NM_024075 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024075.1 /DEF=Homo sapiens LENG5 protein (LENG5), mRNA. /FEA=mRNA /GEN=LENG5 /PROD=LENG5 protein /DB_XREF=gi:13129061 /UG=Hs.15580 LENG5 protein /FL=gb:BC000944.2 gb:NM_024075.1 NM_024075 TSEN34 tRNA splicing endonuclease subunit TSEN34 79042 NM_001077446 /// NM_001282332 /// NM_001282333 /// NM_024075 /// XM_005259241 /// XM_005277087 /// XM_005277276 /// XM_005277318 /// XM_005278290 /// XM_006725878 /// XM_006725966 /// XM_006726065 /// XM_006726166 /// XM_006726203 0000379 // tRNA-type intron splice site recognition and cleavage // inferred from electronic annotation /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation 0000214 // tRNA-intron endonuclease complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000213 // tRNA-intron endonuclease activity // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 86.42 192.31 6.10 0.00 0.00 -4.44
221799_at 221799_at AB037823 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB037823.1 /DEF=Homo sapiens mRNA for KIAA1402 protein, partial cds. /FEA=mRNA /GEN=KIAA1402 /PROD=KIAA1402 protein /DB_XREF=gi:7243184 /UG=Hs.86392 KIAA1402 protein AB037823 chondroitin polymerizing factor 2 CHPF2 54480 NM_001284295 /// NM_019015 0005975 // carbohydrate metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0050510 // N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity // inferred from electronic annotation 72.38 56.59 6.09 0.00 0.00 -4.44
222155_s_at 222155_s_at AK021918 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK021918.1 /DEF=Homo sapiens cDNA FLJ11856 fis, clone HEMBA1006789. /FEA=mRNA /DB_XREF=gi:10433214 /UG=Hs.6459 hypothetical protein FLJ11856 AK021918 solute carrier family 52 (riboflavin transporter), member 2 SLC52A2 79581 NM_001253815 /// NM_001253816 /// NM_024531 /// NR_045600 /// XM_006716658 /// XM_006716659 /// XM_006716660 0006810 // transport // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0032218 // riboflavin transport // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001618 // virus receptor activity // inferred from electronic annotation /// 0032217 // riboflavin transporter activity // inferred from direct assay 98.75 79.53 6.09 0.00 0.00 -4.44
214276_at 214276_at N49268 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N49268 /FEA=EST /DB_XREF=gi:1190434 /DB_XREF=est:yy85e11.s1 /CLONE=IMAGE:280364 /UG=Hs.23510 Kruppel-like factor 12 N49268 Kruppel-like factor 12 KLF12 11278 NM_007249 /// NM_016285 /// XM_005266251 /// XM_005266252 /// XM_006719762 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0001227 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -60.45 82.08 -6.09 0.00 0.00 -4.44
208407_s_at 208407_s_at NM_001331 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001331.1 /DEF=Homo sapiens catenin (cadherin-associated protein), delta 1 (CTNND1), mRNA. /FEA=mRNA /GEN=CTNND1 /PROD=catenin (cadherin-associated protein), delta 1 /DB_XREF=gi:10835009 /UG=Hs.166011 catenin (cadherin-associated protein), delta 1 /FL=gb:NM_001331.1 gb:AF062317.1 NM_001331 catenin (cadherin-associated protein), delta 1 /// TMX2-CTNND1 readthrough (NMD candidate) CTNND1 /// TMX2-CTNND1 1500 /// 100528016 NM_001085458 /// NM_001085459 /// NM_001085460 /// NM_001085461 /// NM_001085462 /// NM_001085463 /// NM_001085464 /// NM_001085465 /// NM_001085466 /// NM_001085467 /// NM_001085468 /// NM_001085469 /// NM_001206883 /// NM_001206884 /// NM_001206885 /// NM_001206886 /// NM_001206887 /// NM_001206888 /// NM_001206889 /// NM_001206890 /// NM_001206891 /// NM_001331 /// NR_037646 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0045216 // cell-cell junction organization // traceable author statement /// 0060690 // epithelial cell differentiation involved in salivary gland development // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005915 // zonula adherens // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation 100.30 139.07 6.09 0.00 0.00 -4.44
208669_s_at 208669_s_at AF109873 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF109873.1 /DEF=Homo sapiens retinoblastoma protein-associated protein mRNA, complete cds. /FEA=mRNA /PROD=retinoblastoma protein-associated protein /DB_XREF=gi:11415000 /UG=Hs.75847 CREBBPEP300 inhibitory protein 1 /FL=gb:AF109873.1 gb:AF274947.1 gb:AF274951.1 gb:AF092135.1 gb:NM_014335.1 AF109873 EP300 interacting inhibitor of differentiation 1 EID1 23741 NM_014335 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from direct assay /// 0035065 // regulation of histone acetylation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from physical interaction /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016235 // aggresome // inferred from direct assay 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0035034 // histone acetyltransferase regulator activity // inferred from direct assay /// 0035035 // histone acetyltransferase binding // inferred from direct assay 226.65 358.35 6.09 0.00 0.00 -4.44
202260_s_at 202260_s_at NM_003165 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003165.1 /DEF=Homo sapiens syntaxin binding protein 1 (STXBP1), mRNA. /FEA=mRNA /GEN=STXBP1 /PROD=syntaxin binding protein 1 /DB_XREF=gi:4507296 /UG=Hs.239356 syntaxin binding protein 1 /FL=gb:AF004563.1 gb:NM_003165.1 NM_003165 syntaxin binding protein 1 STXBP1 6812 NM_001032221 /// NM_003165 0002576 // platelet degranulation // inferred from mutant phenotype /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007412 // axon target recognition // inferred from sequence or structural similarity /// 0010807 // regulation of synaptic vesicle priming // inferred from sequence or structural similarity /// 0014047 // glutamate secretion // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from sequence or structural similarity /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045921 // positive regulation of exocytosis // inferred from electronic annotation /// 0045956 // positive regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050821 // protein stabilization // inferred from electronic annotation /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0070527 // platelet aggregation // inferred from mutant phenotype 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0031091 // platelet alpha granule // inferred from direct assay /// 0043234 // protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000149 // SNARE binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0017075 // syntaxin-1 binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from electronic annotation 55.52 119.61 6.08 0.00 0.00 -4.44
221016_s_at 221016_s_at NM_031283 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031283.1 /DEF=Homo sapiens HMG-box transcription factor TCF-3 (TCF-3), mRNA. /FEA=mRNA /GEN=TCF-3 /PROD=HMG-box transcription factor TCF-3 /DB_XREF=gi:13786122 /FL=gb:NM_031283.1 NM_031283 transcription factor 7-like 1 (T-cell specific, HMG-box) TCF7L1 83439 NM_031283 /// XM_006712109 /// XM_006712110 0006325 // chromatin organization // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007420 // brain development // not recorded /// 0008595 // anterior/posterior axis specification, embryo // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt signaling pathway // non-traceable author statement /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0046022 // positive regulation of transcription from RNA polymerase II promoter during mitosis // inferred from electronic annotation /// 0048319 // axial mesoderm morphogenesis // inferred from electronic annotation /// 0048699 // generation of neurons // not recorded /// 0048863 // stem cell differentiation // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // not recorded /// 2000036 // regulation of stem cell maintenance // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // non-traceable author statement /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0044212 // transcription regulatory region DNA binding // not recorded -58.38 159.24 -6.08 0.00 0.00 -4.44
203343_at 203343_at NM_003359 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003359.1 /DEF=Homo sapiens UDP-glucose dehydrogenase (UGDH), mRNA. /FEA=mRNA /GEN=UGDH /PROD=UDP-glucose dehydrogenase /DB_XREF=gi:4507812 /UG=Hs.28309 UDP-glucose dehydrogenase /FL=gb:AF061016.1 gb:NM_003359.1 NM_003359 UDP-glucose 6-dehydrogenase UGDH 7358 NM_001184700 /// NM_001184701 /// NM_003359 /// XM_005262667 /// XM_006714029 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0006011 // UDP-glucose metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006065 // UDP-glucuronate biosynthetic process // inferred from electronic annotation /// 0006065 // UDP-glucuronate biosynthetic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0052695 // cellular glucuronidation // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0003979 // UDP-glucose 6-dehydrogenase activity // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 127.30 208.72 6.07 0.00 0.00 -4.44
204178_s_at 204178_s_at NM_006328 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006328.1 /DEF=Homo sapiens RNA binding motif protein 14 (RBM14), mRNA. /FEA=mRNA /GEN=RBM14 /PROD=RNA binding motif protein 14 /DB_XREF=gi:5454063 /UG=Hs.11170 RNA binding motif protein 14 /FL=gb:AF080561.1 gb:NM_006328.1 NM_006328 RNA binding motif protein 14 RBM14 10432 NM_001198836 /// NM_001198837 /// NM_006328 /// NM_032886 0006260 // DNA replication // non-traceable author statement /// 0006281 // DNA repair // non-traceable author statement /// 0006310 // DNA recombination // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // non-traceable author statement /// 0009725 // response to hormone // traceable author statement /// 0016575 // histone deacetylation // inferred from physical interaction /// 0030520 // intracellular estrogen receptor signaling pathway // non-traceable author statement /// 0042921 // glucocorticoid receptor signaling pathway // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from physical interaction /// 0005730 // nucleolus // inferred from direct assay /// 0016592 // mediator complex // non-traceable author statement /// 0030529 // ribonucleoprotein complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0001104 // RNA polymerase II transcription cofactor activity // non-traceable author statement /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from physical interaction /// 0030674 // protein binding, bridging // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 129.65 105.58 6.07 0.00 0.00 -4.44
201241_at 201241_at NM_004939 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004939.1 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 1 (DDX1), mRNA. /FEA=mRNA /GEN=DDX1 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 1 /DB_XREF=gi:4826685 /UG=Hs.78580 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 1 /FL=gb:X70649.1 gb:NM_004939.1 NM_004939 DEAD (Asp-Glu-Ala-Asp) box helicase 1 DDX1 1653 NM_004939 0000245 // spliceosomal complex assembly // non-traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006302 // double-strand break repair // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006446 // regulation of translational initiation // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0071920 // cleavage body // inferred from direct assay /// 0072669 // tRNA-splicing ligase complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003712 // transcription cofactor activity // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // traceable author statement /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from direct assay /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from direct assay /// 0008143 // poly(A) binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033677 // DNA/RNA helicase activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 155.90 497.62 6.07 0.00 0.00 -4.44
202693_s_at 202693_s_at AW194730 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW194730 /FEA=EST /DB_XREF=gi:6473630 /DB_XREF=est:xn43d11.x1 /CLONE=IMAGE:2696469 /UG=Hs.9075 serinethreonine kinase 17a (apoptosis-inducing) /FL=gb:AB011420.1 gb:NM_004760.1 AW194730 serine/threonine kinase 17a STK17A 9263 NM_004760 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 2000271 // positive regulation of fibroblast apoptotic process // inferred from mutant phenotype /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 103.42 215.44 6.06 0.00 0.00 -4.44
202558_s_at 202558_s_at NM_006948 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006948.1 /DEF=Homo sapiens stress 70 protein chaperone, microsome-associated, 60kD (STCH), mRNA. /FEA=mRNA /GEN=STCH /PROD=stress 70 protein chaperone,microsome-associated, 60kD /DB_XREF=gi:5902125 /UG=Hs.288799 stress 70 protein chaperone, microsome-associated, 60kD /FL=gb:U04735.1 gb:NM_006948.1 NM_006948 heat shock protein 70kDa family, member 13 HSPA13 6782 NM_006948 0000902 // cell morphogenesis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation -117.00 135.50 -6.06 0.00 0.00 -4.44
209482_at 209482_at BC001430 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001430.1 /DEF=Homo sapiens, POP7 (processing of precursor, S. cerevisiae) homolog, clone MGC:1986, mRNA, complete cds. /FEA=mRNA /PROD=POP7 (processing of precursor, S. cerevisiae)homolog /DB_XREF=gi:12655150 /UG=Hs.18747 POP7 (processing of precursor, S. cerevisiae) homolog /FL=gb:BC001430.1 gb:U94316.1 gb:NM_005837.1 BC001430 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) POP7 10248 NM_005837 0008033 // tRNA processing // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // traceable author statement /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // traceable author statement 0005634 // nucleus // traceable author statement /// 0005655 // nucleolar ribonuclease P complex // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 59.05 115.75 6.05 0.00 0.00 -4.44
212788_x_at 212788_x_at BG537190 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG537190 /FEA=EST /DB_XREF=gi:13528922 /DB_XREF=est:602565589F1 /CLONE=IMAGE:4690079 /UG=Hs.111334 ferritin, light polypeptide BG537190 ferritin, light polypeptide FTL 2512 NM_000146 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0055072 // iron ion homeostasis // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005829 // cytosol // traceable author statement /// 0008043 // intracellular ferritin complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005506 // iron ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation -690.55 3487.57 -6.05 0.00 0.00 -4.44
209090_s_at 209090_s_at AL049597 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049597 /DEF=Human DNA sequence from clone RP4-612B15 on chromosome 1p22.2-31.1. Contains the (possibly pseudo) gene for a novel protein similar to 60S ribosomal protein L17 (RPL17), the gene for CGI-61, endophilin B1 and KIAA0491, ESTs, STSs, GSSs and two CpG... /FEA=mRNA_3 /DB_XREF=gi:9663352 /UG=Hs.136309 SH3-containing protein SH3GLB1 /FL=gb:AF263293.1 AL049597 SH3-domain GRB2-like endophilin B1 SH3GLB1 51100 NM_001206651 /// NM_001206652 /// NM_001206653 /// NM_016009 /// XM_006710672 /// XM_006710673 0006654 // phosphatidic acid biosynthetic process // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0051084 // 'de novo' posttranslational protein folding // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from direct assay /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005504 // fatty acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0042171 // lysophosphatidic acid acyltransferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 255.03 376.86 6.05 0.00 0.00 -4.44
212453_at 212453_at AB033105 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB033105.1 /DEF=Homo sapiens mRNA for KIAA1279 protein, partial cds. /FEA=mRNA /GEN=KIAA1279 /PROD=KIAA1279 protein /DB_XREF=gi:6331321 /UG=Hs.172854 DKFZP586B0923 protein AB033105 KIAA1279 KIAA1279 26128 NM_015634 0006839 // mitochondrial transport // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019894 // kinesin binding // inferred from physical interaction 68.55 177.55 6.05 0.00 0.00 -4.44
209905_at 209905_at AI246769 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI246769 /FEA=EST /DB_XREF=gi:3842166 /DB_XREF=est:qk40f08.x1 /CLONE=IMAGE:1871463 /UG=Hs.127428 homeo box A9 /FL=gb:U82759.1 AI246769 HOXA10-HOXA9 readthrough /// homeobox A9 /// microRNA 196b HOXA10-HOXA9 /// HOXA9 /// MIR196B 3205 /// 442920 /// 100534589 NM_152739 /// NR_029911 /// NR_037940 0001501 // skeletal system development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0042118 // endothelial cell activation // inferred from mutant phenotype /// 0045638 // negative regulation of myeloid cell differentiation // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 74.35 80.28 6.04 0.00 0.00 -4.44
217716_s_at 217716_s_at NM_013336 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013336.1 /DEF=Homo sapiens sec61 homolog (HSEC61), mRNA. /FEA=mRNA /GEN=HSEC61 /PROD=sec61 homolog /DB_XREF=gi:7019414 /UG=Hs.306079 sec61 homolog /FL=gb:BC002951.1 gb:AF346602.1 gb:AF084458.1 gb:NM_013336.1 NM_013336 Sec61 alpha 1 subunit (S. cerevisiae) SEC61A1 29927 NM_013336 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from mutant phenotype /// 0006620 // posttranslational protein targeting to membrane // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016049 // cell growth // inferred from mutant phenotype /// 0034341 // response to interferon-gamma // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045047 // protein targeting to ER // inferred from sequence or structural similarity /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from sequence or structural similarity 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from sequence or structural similarity 166.32 378.59 6.04 0.00 0.00 -4.44
214211_at 214211_at AA083483 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA083483 /FEA=EST /DB_XREF=gi:1625544 /DB_XREF=est:zn32a06.s1 /CLONE=IMAGE:549106 /UG=Hs.62954 ferritin, heavy polypeptide 1 AA083483 ferritin, heavy polypeptide 1 FTH1 2495 NM_002032 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006880 // intracellular sequestering of iron ion // inferred from direct assay /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006955 // immune response // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0048147 // negative regulation of fibroblast proliferation // inferred from direct assay /// 0055085 // transmembrane transport // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0008043 // intracellular ferritin complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004322 // ferroxidase activity // inferred from electronic annotation /// 0005506 // iron ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation -102.35 200.82 -6.04 0.00 0.00 -4.44
208944_at 208944_at D50683 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D50683.1 /DEF=Homo sapiens mRNA for TGF-betaIIR alpha, complete cds. /FEA=mRNA /PROD=TGF-betaIIR alpha /DB_XREF=gi:1827474 /UG=Hs.82028 transforming growth factor, beta receptor II (70-80kD) /FL=gb:D50683.1 D50683 transforming growth factor, beta receptor II (70/80kDa) TGFBR2 7048 NM_001024847 /// NM_003242 /// XM_006713316 0001568 // blood vessel development // traceable author statement /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002651 // positive regulation of tolerance induction to self antigen // inferred from sequence or structural similarity /// 0002663 // positive regulation of B cell tolerance induction // inferred from sequence or structural similarity /// 0002666 // positive regulation of T cell tolerance induction // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from direct assay /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred by curator /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // inferred from sequence or structural similarity /// 0032924 // activin receptor signaling pathway // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from direct assay /// 0043011 // myeloid dendritic cell differentiation // inferred from sequence or structural similarity /// 0043415 // positive regulation of skeletal muscle tissue regeneration // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from sequence or structural similarity /// 0051138 // positive regulation of NK T cell differentiation // inferred from sequence or structural similarity /// 0051216 // cartilage development // inferred from electronic annotation /// 0060021 // palate development // inferred from sequence or structural similarity /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060433 // bronchus development // inferred from electronic annotation /// 0060434 // bronchus morphogenesis // inferred from electronic annotation /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060440 // trachea formation // inferred from electronic annotation /// 0060443 // mammary gland morphogenesis // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0070723 // response to cholesterol // inferred from direct assay /// 1990086 // lens fiber cell apoptotic process // inferred from electronic annotation /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0070022 // transforming growth factor beta receptor homodimeric complex // inferred by curator 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta-activated receptor activity // inferred by curator /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from direct assay /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from mutant phenotype /// 0005026 // transforming growth factor beta receptor activity, type II // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017002 // activin-activated receptor activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from direct assay /// 0034713 // type I transforming growth factor beta receptor binding // inferred from physical interaction /// 0034714 // type III transforming growth factor beta receptor binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // inferred from physical interaction -383.70 1465.25 -6.03 0.00 0.00 -4.44
202963_at 202963_at AW027312 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW027312 /FEA=EST /DB_XREF=gi:5886068 /DB_XREF=est:wt73b04.x1 /CLONE=IMAGE:2513071 /UG=Hs.166891 regulatory factor X, 5 (influences HLA class II expression) /FL=gb:NM_000449.1 AW027312 regulatory factor X, 5 (influences HLA class II expression) RFX5 5993 NM_000449 /// NM_001025603 /// XM_005245405 /// XM_005245406 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 76.88 88.11 6.03 0.00 0.00 -4.44
213077_at 213077_at AL049305 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049305.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564A186 (from clone DKFZp564A186). /FEA=mRNA /DB_XREF=gi:4500074 /UG=Hs.104916 hypothetical protein FLJ21940 AL049305 YTH domain containing 2 YTHDC2 64848 NM_022828 /// XM_005272052 /// XR_246540 0006200 // ATP catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // inferred from direct assay /// 0044829 // positive regulation by host of viral genome replication // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008186 // RNA-dependent ATPase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070063 // RNA polymerase binding // inferred from physical interaction 61.38 98.14 6.02 0.00 0.00 -4.44
212382_at 212382_at BF433429 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF433429 /FEA=EST /DB_XREF=gi:11445592 /DB_XREF=est:7q53a12.x1 /CLONE=IMAGE:3702046 /UG=Hs.289068 Homo sapiens cDNA FLJ11918 fis, clone HEMBB1000272 BF433429 transcription factor 4 TCF4 6925 NM_001083962 /// NM_001243226 /// NM_001243227 /// NM_001243228 /// NM_001243230 /// NM_001243231 /// NM_001243232 /// NM_001243233 /// NM_001243234 /// NM_001243235 /// NM_001243236 /// NM_003199 /// XM_005266739 /// XM_005266741 /// XM_005266743 /// XM_005266744 /// XM_005266745 /// XM_005266746 /// XM_005266747 /// XM_005266749 /// XM_005266750 /// XM_005266752 /// XM_005266754 /// XM_005266755 /// XM_005266761 /// XM_006722529 /// XM_006722530 /// XM_006722531 /// XM_006722532 /// XM_006722533 /// XM_006722534 /// XM_006722535 /// XM_006722536 /// XM_006722537 /// XM_006722538 /// XM_006722539 /// XM_006722540 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0065004 // protein-DNA complex assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001011 // sequence-specific DNA binding RNA polymerase recruiting transcription factor activity // inferred from sequence or structural similarity /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from sequence or structural similarity /// 0001087 // TFIIB-class binding transcription factor activity // inferred from sequence or structural similarity /// 0001093 // TFIIB-class transcription factor binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity -193.25 480.65 -6.01 0.00 0.00 -4.44
202107_s_at 202107_s_at NM_004526 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004526.1 /DEF=Homo sapiens minichromosome maintenance deficient (S. cerevisiae) 2 (mitotin) (MCM2), mRNA. /FEA=mRNA /GEN=MCM2 /PROD=minichromosome maintenance deficient (S.cerevisiae) 2 (mitotin) /DB_XREF=gi:4758705 /UG=Hs.57101 minichromosome maintenance deficient (S. cerevisiae) 2 (mitotin) /FL=gb:D83987.1 gb:NM_004526.1 NM_004526 minichromosome maintenance complex component 2 MCM2 4171 NM_004526 /// NR_073375 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006268 // DNA unwinding involved in DNA replication // inferred from electronic annotation /// 0006270 // DNA replication initiation // inferred from mutant phenotype /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007049 // cell cycle // traceable author statement /// 0015979 // photosynthesis // inferred from electronic annotation /// 0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005664 // nuclear origin of replication recognition complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0042555 // MCM complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003688 // DNA replication origin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016851 // magnesium chelatase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 136.57 172.16 6.01 0.00 0.00 -4.44
213187_x_at 213187_x_at BG538564 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG538564 /FEA=EST /DB_XREF=gi:13530797 /DB_XREF=est:602567289F1 /CLONE=IMAGE:4691639 /UG=Hs.324746 alpha-2-HS-glycoprotein BG538564 ferritin, light polypeptide FTL 2512 NM_000146 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0055072 // iron ion homeostasis // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0008043 // intracellular ferritin complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation -765.80 2220.10 -6.01 0.00 0.00 -4.44
212791_at 212791_at AL042729 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL042729 /FEA=EST /DB_XREF=gi:5935545 /DB_XREF=est:DKFZp434B0222_s1 /CLONE=DKFZp434B0222 /UG=Hs.112023 ESTs AL042729 chromosome 1 open reading frame 216 C1orf216 127703 NM_152374 49.05 75.33 6.00 0.00 0.00 -4.44
201270_x_at 201270_x_at NM_015332 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015332.1 /DEF=Homo sapiens KIAA1068 protein (KIAA1068), mRNA. /FEA=mRNA /GEN=KIAA1068 /PROD=KIAA1068 protein /DB_XREF=gi:13357209 /UG=Hs.4770 KIAA1068 protein /FL=gb:BC003691.1 gb:NM_015332.1 NM_015332 NudC domain containing 3 NUDCD3 23386 NM_015332 71.10 234.67 6.00 0.00 0.00 -4.44
209020_at 209020_at AF217514 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF217514.1 /DEF=Homo sapiens uncharacterized bone marrow protein BM038 mRNA, complete cds. /FEA=mRNA /PROD=uncharacterized bone marrow protein BM038 /DB_XREF=gi:7688970 /UG=Hs.75798 hypothetical protein /FL=gb:AF161517.1 gb:AF151041.1 gb:AF217514.1 gb:NM_016470.1 AF217514 oxidative stress responsive serine-rich 1 OSER1 51526 NM_016470 /// XM_005260424 /// XM_005260425 /// XM_006723803 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation -80.90 144.97 -6.00 0.00 0.00 -4.44
65591_at 65591_at N64681 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. N64681:yz87g05.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-290072 /clone_end=3' /gb=N64681 /gi=1212510 /ug=Hs.239120 /len=606 N64681 WD repeat domain 48 WDR48 57599 NM_020839 /// XM_005265346 0016032 // viral process // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -66.52 168.74 -6.00 0.00 0.00 -4.44
201333_s_at 201333_s_at AI807672 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI807672 /FEA=EST /DB_XREF=gi:5394238 /DB_XREF=est:wf49f10.x1 /CLONE=IMAGE:2358955 /UG=Hs.6582 Rho guanine exchange factor (GEF) 12 /FL=gb:AF180681.1 gb:NM_015313.1 AI807672 Rho guanine nucleotide exchange factor (GEF) 12 ARHGEF12 23365 NM_001198665 /// NM_015313 /// XM_005271478 /// XM_005271480 /// XM_006718805 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001664 // G-protein coupled receptor binding // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation -60.10 86.00 -5.99 0.00 0.00 -4.44
201221_s_at 201221_s_at NM_003089 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003089.1 /DEF=Homo sapiens small nuclear ribonucleoprotein 70kD polypeptide (RNP antigen) (SNRP70), mRNA. /FEA=mRNA /GEN=SNRP70 /PROD=small nuclear ribonucleoprotein 70kD polypeptide(RNP antigen) /DB_XREF=gi:4507118 /UG=Hs.174051 small nuclear ribonucleoprotein 70kD polypeptide (RNP antigen) /FL=gb:BC000342.1 gb:M22636.1 gb:NM_003089.1 NM_003089 small nuclear ribonucleoprotein 70kDa (U1) SNRNP70 6625 NM_001009820 /// NM_003089 /// XM_005259177 /// XM_005259178 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0032479 // regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032608 // interferon-beta production // inferred from electronic annotation /// 0032608 // interferon-beta production // inferred from sequence or structural similarity /// 0034340 // response to type I interferon // inferred from electronic annotation /// 0034340 // response to type I interferon // inferred from sequence or structural similarity /// 0043484 // regulation of RNA splicing // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from sequence or structural similarity /// 0070534 // protein K63-linked ubiquitination // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005685 // U1 snRNP // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 204.55 326.57 5.99 0.00 0.00 -4.44
203234_at 203234_at NM_003364 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003364.1 /DEF=Homo sapiens uridine phosphorylase (UP), mRNA. /FEA=mRNA /GEN=UP /PROD=uridine phosphorylase /DB_XREF=gi:4507838 /UG=Hs.77573 uridine phosphorylase /FL=gb:BC001405.1 gb:NM_003364.1 NM_003364 uridine phosphorylase 1 UPP1 7378 NM_001287426 /// NM_001287428 /// NM_001287429 /// NM_001287430 /// NM_003364 /// NM_181597 /// NR_109837 /// XM_005249838 /// XM_006715771 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006220 // pyrimidine nucleotide metabolic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009166 // nucleotide catabolic process // inferred from electronic annotation /// 0042149 // cellular response to glucose starvation // inferred from electronic annotation /// 0043097 // pyrimidine nucleoside salvage // traceable author statement /// 0044206 // UMP salvage // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046108 // uridine metabolic process // inferred from electronic annotation /// 0046135 // pyrimidine nucleoside catabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004850 // uridine phosphorylase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation -76.97 110.29 -5.99 0.00 0.00 -4.44
203119_at 203119_at NM_024098 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024098.1 /DEF=Homo sapiens hypothetical protein MGC2574 (MGC2574), mRNA. /FEA=mRNA /GEN=MGC2574 /PROD=hypothetical protein MGC2574 /DB_XREF=gi:13129103 /UG=Hs.4253 hypothetical protein MGC2574 /FL=gb:BC001378.1 gb:NM_024098.1 NM_024098 coiled-coil domain containing 86 CCDC86 79080 NM_024098 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 98.50 261.45 5.99 0.00 0.00 -4.44
213803_at 213803_at BG545463 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG545463 /FEA=EST /DB_XREF=gi:13544128 /DB_XREF=est:602572695F1 /CLONE=IMAGE:4701118 /UG=Hs.180446 karyopherin (importin) beta 1 BG545463 karyopherin (importin) beta 1 KPNB1 3837 NM_001276453 /// NM_002265 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006610 // ribosomal protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071782 // endoplasmic reticulum tubular network // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 104.10 169.82 5.99 0.00 0.00 -4.44
201845_s_at 201845_s_at AB029551 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB029551.1 /DEF=Homo sapiens YEAF1 mRNA for YY1 and E4TF1 associated factor 1, complete cds. /FEA=mRNA /GEN=YEAF1 /PROD=YY1 and E4TF1 associated factor 1 /DB_XREF=gi:6714542 /UG=Hs.7910 RING1 and YY1 binding protein /FL=gb:AF179286.1 gb:AB029551.1 gb:NM_012234.1 AB029551 RING1 and YY1 binding protein RYBP 23429 NM_012234 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0035518 // histone H2A monoubiquitination // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -79.80 127.90 -5.98 0.00 0.00 -4.44
209682_at 209682_at U26710 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U26710.1 /DEF=Human cbl-b mRNA, complete cds. /FEA=mRNA /PROD=cbl-b /DB_XREF=gi:862406 /UG=Hs.3144 Cas-Br-M (murine) ectropic retroviral transforming sequence b /FL=gb:U26710.1 U26710 Cbl proto-oncogene B, E3 ubiquitin protein ligase CBLB 868 NM_170662 /// XM_005247852 /// XM_005247853 /// XM_006713796 /// XM_006713797 /// XR_427384 /// XR_427385 0002669 // positive regulation of T cell anergy // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0023051 // regulation of signaling // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042110 // T cell activation // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0046642 // negative regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -65.28 111.66 -5.98 0.00 0.00 -4.44
213294_at 213294_at AV755522 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV755522 /FEA=EST /DB_XREF=gi:10913370 /DB_XREF=est:AV755522 /CLONE=BMFAWG03 /UG=Hs.306117 Homo sapiens clone FLC0675 PRO2870 mRNA, complete cds AV755522 eukaryotic translation initiation factor 2-alpha kinase 2 EIF2AK2 5610 NM_001135651 /// NM_001135652 /// NM_002759 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0001819 // positive regulation of cytokine production // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009615 // response to virus // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // traceable author statement /// 0019054 // modulation by virus of host process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0030683 // evasion or tolerance by virus of host immune response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // inferred from sequence or structural similarity /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from sequence or structural similarity /// 0033689 // negative regulation of osteoblast proliferation // inferred from mutant phenotype /// 0035455 // response to interferon-alpha // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 1900225 // regulation of NLRP3 inflammasome complex assembly // inferred from sequence or structural similarity /// 1901224 // positive regulation of NIK/NF-kappaB signaling // inferred from sequence or structural similarity /// 1901532 // regulation of hematopoietic progenitor cell differentiation // inferred from sequence or structural similarity /// 1902033 // regulation of hematopoietic stem cell proliferation // inferred from sequence or structural similarity /// 1902036 // regulation of hematopoietic stem cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 81.62 108.99 5.98 0.00 0.00 -4.44
204017_at 204017_at NM_006855 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006855.2 /DEF=Homo sapiens KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 (KDELR3), transcript variant 1, mRNA. /FEA=mRNA /GEN=KDELR3 /PROD=KDEL receptor 3, isoform a /DB_XREF=gi:8051612 /UG=Hs.250696 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 /FL=gb:BC001277.1 gb:NM_006855.2 NM_006855 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 KDELR3 11015 NM_006855 /// NM_016657 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0046923 // ER retention sequence binding // inferred from electronic annotation 76.02 152.31 5.98 0.00 0.00 -4.44
212738_at 212738_at AV717623 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV717623 /FEA=EST /DB_XREF=gi:10814775 /DB_XREF=est:AV717623 /CLONE=DCBBIC10 /UG=Hs.80305 Human clone 23719 mRNA sequence AV717623 Rho GTPase activating protein 19 ARHGAP19 84986 NM_001204300 /// NM_001256423 /// NM_032900 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005096 // GTPase activator activity // inferred from electronic annotation 49.48 31.79 5.97 0.00 0.00 -4.44
208735_s_at 208735_s_at AF022231 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF022231.1 /DEF=Homo sapiens unknown protein mRNA, complete cds. /FEA=mRNA /PROD=unknown protein /DB_XREF=gi:4103319 /UG=Hs.180669 conserved gene amplified in osteosarcoma /FL=gb:AF000152.1 gb:AF022231.1 AF022231 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 CTDSP2 10106 NM_005730 /// XM_005268556 0006470 // protein dephosphorylation // inferred from direct assay /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008420 // CTD phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -93.22 186.76 -5.96 0.00 0.00 -4.44
208996_s_at 208996_s_at BC000409 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000409.1 /DEF=Homo sapiens, polymerase (RNA) II (DNA directed) polypeptide C (33kD), clone MGC:8577, mRNA, complete cds. /FEA=mRNA /PROD=polymerase (RNA) II (DNA directed) polypeptide C(33kD) /DB_XREF=gi:12653280 /UG=Hs.79402 polymerase (RNA) II (DNA directed) polypeptide C (33kD) /FL=gb:BC000409.1 gb:BC003159.1 gb:AF008443.1 gb:NM_002694.1 BC000409 polymerase (RNA) II (DNA directed) polypeptide C, 33kDa POLR2C 5432 NM_002694 /// NM_032940 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0001055 // RNA polymerase II activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 124.72 290.91 5.96 0.00 0.00 -4.44
205443_at 205443_at NM_003082 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003082.1 /DEF=Homo sapiens small nuclear RNA activating complex, polypeptide 1, 43kD (SNAPC1), mRNA. /FEA=mRNA /GEN=SNAPC1 /PROD=small nuclear RNA activating complex,polypeptide 1, 43kD /DB_XREF=gi:4507100 /UG=Hs.179312 small nuclear RNA activating complex, polypeptide 1, 43kD /FL=gb:U44754.1 gb:NM_003082.1 NM_003082 small nuclear RNA activating complex, polypeptide 1, 43kDa SNAPC1 6617 NM_003082 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0003677 // DNA binding // inferred from electronic annotation -168.37 185.49 -5.96 0.00 0.00 -4.44
218418_s_at 218418_s_at NM_015493 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015493.1 /DEF=Homo sapiens DKFZP434N161 protein (DKFZP434N161), mRNA. /FEA=mRNA /GEN=DKFZP434N161 /PROD=DKFZP434N161 protein /DB_XREF=gi:7661583 /UG=Hs.284208 DKFZP434N161 protein /FL=gb:NM_015493.1 NM_015493 KN motif and ankyrin repeat domains 2 KANK2 25959 NM_001136191 /// NM_015493 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0033147 // negative regulation of intracellular estrogen receptor signaling pathway // inferred from direct assay /// 0043069 // negative regulation of programmed cell death // inferred from direct assay /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 137.10 181.07 5.96 0.00 0.00 -4.44
206472_s_at 206472_s_at NM_005078 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005078.1 /DEF=Homo sapiens transducin-like enhancer of split 3, homolog of Drosophila E(sp1) (TLE3), mRNA. /FEA=mRNA /GEN=TLE3 /PROD=transducin-like enhancer of split 3, homolog ofDrosophila E(sp1) /DB_XREF=gi:4827029 /UG=Hs.287362 transducin-like enhancer of split 3, homolog of Drosophila E(sp1) /FL=gb:M99438.1 gb:NM_005078.1 NM_005078 transducin-like enhancer of split 3 TLE3 7090 NM_001105192 /// NM_001282979 /// NM_001282980 /// NM_001282981 /// NM_001282982 /// NM_005078 /// NM_020908 /// XM_005254622 /// XM_005254623 /// XM_005254625 /// XM_005254628 /// XM_005254633 /// XM_006720662 /// XM_006720663 /// XM_006720664 /// XM_006720665 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0009887 // organ morphogenesis // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement 0005515 // protein binding // inferred from physical interaction -53.30 54.00 -5.95 0.00 0.00 -4.44
38157_at 38157_at AF059252 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AF059252:Homo sapiens clone 1 HLA class III protein Dom3z (DOM3Z) mRNA, complete cds /cds=(129,1319) /gb=AF059252 /gi=3372629 /ug=Hs.153299 /len=1386 AF059252 decapping exoribonuclease DXO 1797 NM_005510 /// XM_006715005 /// XM_006715006 /// XM_006715007 /// XM_006725474 /// XM_006725475 /// XM_006725476 /// XM_006725688 /// XM_006725689 /// XM_006725690 /// XM_006725898 /// XM_006725899 /// XM_006725900 /// XM_006725985 /// XM_006725986 /// XM_006725987 /// XM_006726078 /// XM_006726079 /// XM_006726080 /// XR_427826 /// XR_430856 /// XR_430934 /// XR_430935 /// XR_430996 /// XR_431013 /// XR_431043 0006402 // mRNA catabolic process // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from sequence or structural similarity /// 0050779 // RNA destabilization // inferred from sequence or structural similarity /// 0071028 // nuclear mRNA surveillance // inferred from sequence or structural similarity /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0008409 // 5'-3' exonuclease activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0034353 // RNA pyrophosphohydrolase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 48.68 35.64 5.95 0.00 0.00 -4.44
217797_at 217797_at NM_016406 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016406.1 /DEF=Homo sapiens hypothetical protein (HSPC155), mRNA. /FEA=mRNA /GEN=HSPC155 /PROD=hypothetical protein /DB_XREF=gi:7705480 /UG=Hs.177507 hypothetical protein /FL=gb:BC005187.1 gb:AF151884.1 gb:AF161504.1 gb:NM_016406.1 NM_016406 ubiquitin-fold modifier conjugating enzyme 1 UFC1 51506 NM_016406 /// XM_005245254 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0071569 // protein ufmylation // inferred from direct assay /// 0071569 // protein ufmylation // inferred from mutant phenotype 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0071568 // UFM1 conjugating enzyme activity // inferred from direct assay 114.90 373.15 5.95 0.00 0.00 -4.44
207292_s_at 207292_s_at NM_002749 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002749.1 /DEF=Homo sapiens mitogen-activated protein kinase 7 (MAPK7), mRNA. /FEA=mRNA /GEN=MAPK7 /PROD=mitogen-activated protein kinase 7 /DB_XREF=gi:4506092 /UG=Hs.3080 mitogen-activated protein kinase 7 /FL=gb:NM_002749.1 gb:U25278.1 NM_002749 mitogen-activated protein kinase 7 MAPK7 5598 NM_002749 /// NM_139032 /// NM_139033 /// NM_139034 /// XM_005256719 /// XM_006721557 /// XM_006721558 /// XM_006721559 /// XM_006721560 0000165 // MAPK cascade // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // non-traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030821 // negative regulation of cAMP catabolic process // non-traceable author statement /// 0034115 // negative regulation of heterotypic cell-cell adhesion // inferred from genetic interaction /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0036003 // positive regulation of transcription from RNA polymerase II promoter in response to stress // inferred from mutant phenotype /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050728 // negative regulation of inflammatory response // traceable author statement /// 0051247 // positive regulation of protein metabolic process // inferred from genetic interaction /// 0051344 // negative regulation of cyclic-nucleotide phosphodiesterase activity // non-traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051534 // negative regulation of NFAT protein import into nucleus // inferred from electronic annotation /// 0060761 // negative regulation of response to cytokine stimulus // inferred from genetic interaction /// 0070301 // cellular response to hydrogen peroxide // inferred from mutant phenotype /// 0071363 // cellular response to growth factor stimulus // inferred from genetic interaction /// 0071499 // cellular response to laminar fluid shear stress // inferred from mutant phenotype /// 0071499 // cellular response to laminar fluid shear stress // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from direct assay /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from mutant phenotype /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from genetic interaction 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016605 // PML body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from physical interaction -78.45 71.62 -5.94 0.00 0.00 -4.44
211450_s_at 211450_s_at D89646 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D89646.1 /DEF=Homo sapiens GTBP mRNA for GTBP-ALT, complete cds. /FEA=mRNA /GEN=GTBP /PROD=GTBP-ALT /DB_XREF=gi:2687868 /UG=Hs.3248 mutS (E. coli) homolog 6 /FL=gb:D89646.1 D89646 mutS homolog 6 MSH6 2956 NM_000179 /// NM_001281492 /// NM_001281493 /// NM_001281494 /// XM_005264271 0000710 // meiotic mismatch repair // not recorded /// 0000710 // meiotic mismatch repair // inferred from sequence or structural similarity /// 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006281 // DNA repair // inferred from direct assay /// 0006298 // mismatch repair // inferred from direct assay /// 0006298 // mismatch repair // inferred from genetic interaction /// 0006298 // mismatch repair // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // not recorded /// 0008340 // determination of adult lifespan // inferred from sequence or structural similarity /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from sequence or structural similarity /// 0009411 // response to UV // not recorded /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016446 // somatic hypermutation of immunoglobulin genes // inferred from sequence or structural similarity /// 0016447 // somatic recombination of immunoglobulin gene segments // inferred from sequence or structural similarity /// 0043570 // maintenance of DNA repeat elements // inferred from mutant phenotype /// 0045190 // isotype switching // not recorded /// 0045190 // isotype switching // inferred from sequence or structural similarity /// 0045910 // negative regulation of DNA recombination // inferred from direct assay /// 0051096 // positive regulation of helicase activity // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // inferred from sequence or structural similarity 0000228 // nuclear chromosome // not recorded /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0032301 // MutSalpha complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000400 // four-way junction DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from direct assay /// 0030983 // mismatched DNA binding // inferred from direct assay /// 0032137 // guanine/thymine mispair binding // inferred from direct assay /// 0032142 // single guanine insertion binding // inferred from direct assay /// 0032143 // single thymine insertion binding // inferred from direct assay /// 0032357 // oxidized purine DNA binding // inferred from direct assay /// 0032405 // MutLalpha complex binding // inferred from direct assay /// 0035064 // methylated histone binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay 80.25 83.42 5.94 0.00 0.00 -4.44
209094_at 209094_at AL078459 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL078459 /DEF=Human DNA sequence from clone RP4-621F18 on chromosome 1p11.4-21.3. Contains the 3 end of the gene for ng,ng dimethylarginine dimethylaminohydrolase (EC 3.5.3.18), ESTs, STSs and GSSs /FEA=mRNA /DB_XREF=gi:5791502 /UG=Hs.303180 dimethylarginine dimethylaminohydrolase 1 /FL=gb:AB001915.1 gb:NM_012137.1 AL078459 dimethylarginine dimethylaminohydrolase 1 DDAH1 23576 NM_001134445 /// NM_012137 /// XM_005270706 /// XM_005270707 /// XM_005270708 /// XM_005270709 /// XM_005270710 /// XM_006710543 /// XM_006710544 0000052 // citrulline metabolic process // inferred from direct assay /// 0003073 // regulation of systemic arterial blood pressure // inferred from sequence or structural similarity /// 0006525 // arginine metabolic process // inferred from electronic annotation /// 0006527 // arginine catabolic process // traceable author statement /// 0007263 // nitric oxide mediated signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // traceable author statement /// 0016403 // dimethylargininase activity // inferred from direct assay /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016813 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 201.55 547.62 5.94 0.00 0.00 -4.44
202630_at 202630_at AA046411 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA046411 /FEA=EST /DB_XREF=gi:1526376 /DB_XREF=est:zf47b09.s1 /CLONE=IMAGE:380057 /UG=Hs.84084 amyloid beta precursor protein (cytoplasmic tail)-binding protein 2 /FL=gb:AF017782.1 gb:NM_006380.1 AA046411 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 APPBP2 10513 NM_001282476 /// NM_006380 /// XM_006721639 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0008152 // metabolic process // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from direct assay 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // non-traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay 0003777 // microtubule motor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 53.85 57.92 5.94 0.00 0.00 -4.44
213852_at 213852_at BG289199 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG289199 /FEA=EST /DB_XREF=gi:13044802 /DB_XREF=est:602387595F1 /CLONE=IMAGE:4516438 /UG=Hs.65648 RNA binding motif protein 8A BG289199 RNA binding motif protein 8A RBM8A 9939 NM_005105 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003729 // mRNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 86.90 128.22 5.94 0.00 0.00 -4.44
204466_s_at 204466_s_at BG260394 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG260394 /FEA=EST /DB_XREF=gi:12770210 /DB_XREF=est:602371523F1 /CLONE=IMAGE:4479556 /UG=Hs.76930 synuclein, alpha (non A4 component of amyloid precursor) /FL=gb:L08850.1 gb:NM_000345.2 BG260394 synuclein, alpha (non A4 component of amyloid precursor) SNCA 6622 NM_000345 /// NM_001146054 /// NM_001146055 /// NM_007308 0001774 // microglial cell activation // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001956 // positive regulation of neurotransmitter secretion // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006638 // neutral lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007006 // mitochondrial membrane organization // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0010040 // response to iron(II) ion // inferred from direct assay /// 0010517 // regulation of phospholipase activity // inferred from direct assay /// 0010642 // negative regulation of platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0014048 // regulation of glutamate secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // traceable author statement /// 0031115 // negative regulation of microtubule polymerization // inferred from direct assay /// 0031623 // receptor internalization // inferred from direct assay /// 0031648 // protein destabilization // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032410 // negative regulation of transporter activity // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0032769 // negative regulation of monooxygenase activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // inferred from direct assay /// 0040012 // regulation of locomotion // inferred from electronic annotation /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // traceable author statement /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042775 // mitochondrial ATP synthesis coupled electron transport // inferred from electronic annotation /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043206 // extracellular fibril organization // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from direct assay /// 0045920 // negative regulation of exocytosis // inferred from mutant phenotype /// 0045963 // negative regulation of dopamine metabolic process // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // inferred from sequence or structural similarity /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050808 // synapse organization // inferred from electronic annotation /// 0050812 // regulation of acyl-CoA biosynthetic process // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051583 // dopamine uptake involved in synaptic transmission // traceable author statement /// 0051585 // negative regulation of dopamine uptake involved in synaptic transmission // inferred from direct assay /// 0051612 // negative regulation of serotonin uptake // inferred from direct assay /// 0051622 // negative regulation of norepinephrine uptake // inferred from direct assay /// 0055074 // calcium ion homeostasis // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from direct assay /// 0070495 // negative regulation of thrombin receptor signaling pathway // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from direct assay /// 0071280 // cellular response to copper ion // inferred from direct assay /// 0071872 // cellular response to epinephrine stimulus // traceable author statement /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 1901214 // regulation of neuron death // inferred from genetic interaction 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // traceable author statement /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016234 // inclusion body // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // inferred from direct assay /// 0043195 // terminal bouton // inferred from electronic annotation /// 0043205 // fibril // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0005504 // fatty acid binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0019894 // kinesin binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043014 // alpha-tubulin binding // inferred from physical interaction /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0045502 // dynein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from direct assay /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from direct assay /// 0060961 // phospholipase D inhibitor activity // inferred from direct assay 169.40 492.52 5.94 0.00 0.00 -4.44
215884_s_at 215884_s_at AK001029 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001029.1 /DEF=Homo sapiens cDNA FLJ10167 fis, clone HEMBA1003617, highly similar to Homo sapiens HRIHFB2157 mRNA. /FEA=mRNA /DB_XREF=gi:7022050 /UG=Hs.4552 ubiquilin 2 AK001029 ubiquilin 2 UBQLN2 29978 NM_013444 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 57.57 118.01 5.94 0.00 0.00 -4.44
213229_at 213229_at BF590131 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF590131 /FEA=EST /DB_XREF=gi:11682455 /DB_XREF=est:nab19e04.x1 /CLONE=IMAGE:3266383 /UG=Hs.87889 helicase-moi BF590131 dicer 1, ribonuclease type III DICER1 23405 NM_001195573 /// NM_001271282 /// NM_001291628 /// NM_030621 /// NM_177438 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010070 // zygote asymmetric cell division // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010626 // negative regulation of Schwann cell proliferation // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0014040 // positive regulation of Schwann cell differentiation // inferred from sequence or structural similarity /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021675 // nerve development // inferred from sequence or structural similarity /// 0021889 // olfactory bulb interneuron differentiation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030422 // production of siRNA involved in RNA interference // inferred from direct assay /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from mutant phenotype /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031054 // pre-miRNA processing // inferred from direct assay /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0031643 // positive regulation of myelination // inferred from sequence or structural similarity /// 0032290 // peripheral nervous system myelin formation // inferred from sequence or structural similarity /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from sequence or structural similarity /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042487 // regulation of odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045069 // regulation of viral genome replication // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048536 // spleen development // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048713 // regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0055013 // cardiac muscle cell development // inferred from electronic annotation /// 0060119 // inner ear receptor cell development // inferred from electronic annotation /// 0060576 // intestinal epithelial cell development // inferred from electronic annotation /// 0070173 // regulation of enamel mineralization // inferred from electronic annotation /// 0071335 // hair follicle cell proliferation // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 2000630 // positive regulation of miRNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016442 // RISC complex // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004525 // ribonuclease III activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0035198 // miRNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 104.35 87.95 5.94 0.00 0.00 -4.44
203455_s_at 203455_s_at NM_002970 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002970.1 /DEF=Homo sapiens spermidinespermine N1-acetyltransferase (SAT), mRNA. /FEA=mRNA /GEN=SAT /PROD=spermidinespermine N1-acetyltransferase /DB_XREF=gi:4506788 /UG=Hs.28491 spermidinespermine N1-acetyltransferase /FL=gb:BC002503.1 gb:M77693.1 gb:NM_002970.1 NM_002970 spermidine/spermine N1-acetyltransferase 1 SAT1 6303 NM_002970 /// NR_027783 0001525 // angiogenesis // inferred from expression pattern /// 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // traceable author statement /// 0006598 // polyamine catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009447 // putrescine catabolic process // inferred from electronic annotation /// 0032918 // spermidine acetylation // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004145 // diamine N-acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019809 // spermidine binding // inferred from electronic annotation -324.82 548.26 -5.93 0.00 0.00 -4.44
202140_s_at 202140_s_at NM_003992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003992.1 /DEF=Homo sapiens CDC-like kinase 3 (CLK3), transcript variant phclk3, mRNA. /FEA=mRNA /GEN=CLK3 /PROD=CDC-like kinase 3 isoform hclk3 /DB_XREF=gi:4502884 /UG=Hs.73987 CDC-like kinase 3 /FL=gb:BC002555.1 gb:NM_003992.1 gb:L29217.1 NM_003992 CDC-like kinase 3 CLK3 1198 NM_001130028 /// NM_001292 /// NM_003992 /// XM_005254151 /// XM_005254152 /// XM_005254153 /// XM_005254154 /// XM_006720383 /// XM_006720384 0006468 // protein phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -65.97 107.36 -5.93 0.00 0.00 -4.44
202392_s_at 202392_s_at NM_014338 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014338.1 /DEF=Homo sapiens phosphatidylserine decarboxylase (PISD), mRNA. /FEA=mRNA /GEN=PISD /PROD=phosphatidylserine decarboxylase /DB_XREF=gi:13489111 /UG=Hs.8128 phosphatidylserine decarboxylase /FL=gb:NM_014338.1 NM_014338 microRNA 7109 /// phosphatidylserine decarboxylase MIR7109 /// PISD 23761 /// 102465666 NM_014338 /// NR_106959 /// XM_005261455 /// XM_005261456 /// XM_005261457 /// XM_005261458 /// XM_005261459 /// XM_005261460 /// XM_005261461 /// XM_005261462 /// XM_006724199 /// XM_006724200 /// XM_006724201 /// XM_006724202 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006646 // phosphatidylethanolamine biosynthetic process // inferred from electronic annotation /// 0006646 // phosphatidylethanolamine biosynthetic process // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0004609 // phosphatidylserine decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 59.42 57.01 5.93 0.00 0.00 -4.44
200992_at 200992_at AL137335 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL137335.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434A179 (from clone DKFZp434A179); partial cds. /FEA=mRNA /GEN=DKFZp434A179 /PROD=hypothetical protein /DB_XREF=gi:6807827 /UG=Hs.5151 RAN binding protein 7 /FL=gb:AF098799.1 gb:NM_006391.1 AL137335 importin 7 IPO7 10527 NM_006391 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005083 // small GTPase regulator activity // traceable author statement /// 0005215 // transporter activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation -139.62 566.61 -5.92 0.00 0.00 -4.44
218932_at 218932_at NM_017953 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017953.1 /DEF=Homo sapiens hypothetical protein FLJ20729 (FLJ20729), mRNA. /FEA=mRNA /GEN=FLJ20729 /PROD=hypothetical protein FLJ20729 /DB_XREF=gi:8923654 /UG=Hs.5111 hypothetical protein FLJ20729 /FL=gb:AL442074.1 gb:NM_017953.1 NM_017953 zinc finger, HIT-type containing 6 ZNHIT6 54680 NM_001170670 /// NM_017953 /// XM_006710703 0000492 // box C/D snoRNP assembly // inferred from mutant phenotype /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070761 // pre-snoRNP complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 55.17 121.61 5.92 0.00 0.00 -4.44
221752_at 221752_at AL041728 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL041728 /FEA=EST /DB_XREF=gi:5421076 /DB_XREF=est:DKFZp434O0717_s1 /CLONE=DKFZp434O0717 /UG=Hs.60377 KIAA1298 protein AL041728 slingshot protein phosphatase 1 SSH1 54434 NM_001161330 /// NM_001161331 /// NM_018984 /// XM_005268984 /// XM_005268985 /// XM_005268986 /// XM_006719466 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // inferred from mutant phenotype /// 0008064 // regulation of actin polymerization or depolymerization // not recorded /// 0010591 // regulation of lamellipodium assembly // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0032268 // regulation of cellular protein metabolic process // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0071318 // cellular response to ATP // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from mutant phenotype /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation -370.98 384.94 -5.92 0.00 0.00 -4.44
200010_at 200010_at NM_000975 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000975.1 /DEF=Homo sapiens ribosomal protein L11 (RPL11), mRNA. /FEA=mRNA /GEN=RPL11 /PROD=ribosomal protein L11 /DB_XREF=gi:4506594 /UG=Hs.179943 ribosomal protein L11 /FL=gb:L05092.1 gb:NM_000975.1 NM_000975 ribosomal protein L11 RPL11 6135 NM_000975 /// NM_001199802 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006605 // protein targeting // inferred from mutant phenotype /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034504 // protein localization to nucleus // inferred from sequence or structural similarity /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -892.55 2566.00 -5.92 0.00 0.00 -4.44
217744_s_at 217744_s_at NM_022121 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022121.1 /DEF=Homo sapiens p53-induced protein PIGPC1 (PIGPC1), mRNA. /FEA=mRNA /GEN=PIGPC1 /PROD=p53-induced protein PIGPC1 /DB_XREF=gi:11545842 /UG=Hs.303125 p53-induced protein PIGPC1 /FL=gb:AF317550.1 gb:NM_022121.1 NM_022121 PERP, TP53 apoptosis effector PERP 64065 NM_022121 0002934 // desmosome organization // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0034113 // heterotypic cell-cell adhesion // inferred from electronic annotation /// 0045862 // positive regulation of proteolysis // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from electronic annotation /// 0097186 // amelogenesis // inferred from electronic annotation /// 0097202 // activation of cysteine-type endopeptidase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030057 // desmosome // inferred from electronic annotation -121.88 256.14 -5.92 0.00 0.00 -4.44
212368_at 212368_at AA972711 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA972711 /FEA=EST /DB_XREF=gi:3147891 /DB_XREF=est:op90e07.s1 /CLONE=IMAGE:1584132 /UG=Hs.173081 KIAA0530 protein AA972711 zinc finger protein 292 ZNF292 23036 NM_015021 /// XM_005248697 /// XM_005248698 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -215.85 179.65 -5.92 0.00 0.00 -4.44
202228_s_at 202228_s_at NM_017455 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017455.1 /DEF=Homo sapiens stromal cell derived factor receptor 1 (SDFR1), transcript variant alpha, mRNA. /FEA=mRNA /GEN=SDFR1 /PROD=stromal cell derived factor receptor 1 isoforma /DB_XREF=gi:9257239 /UG=Hs.6354 stromal cell derived factor receptor 1 /FL=gb:AF109127.1 gb:NM_017455.1 NM_017455 neuroplastin NPTN 27020 NM_001161363 /// NM_001161364 /// NM_012428 /// NM_017455 /// XM_005254304 /// XR_429449 0001934 // positive regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from sequence or structural similarity /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from sequence or structural similarity /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // inferred from sequence or structural similarity /// 0060291 // long-term synaptic potentiation // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from sequence or structural similarity 0005105 // type 1 fibroblast growth factor receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // inferred from sequence or structural similarity 216.35 575.77 5.92 0.00 0.00 -4.44
203556_at 203556_at NM_014943 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014943.1 /DEF=Homo sapiens KIAA0854 protein (KIAA0854), mRNA. /FEA=mRNA /GEN=KIAA0854 /PROD=KIAA0854 protein /DB_XREF=gi:7662341 /UG=Hs.30209 KIAA0854 protein /FL=gb:AB020661.1 gb:NM_014943.1 NM_014943 zinc fingers and homeoboxes 2 ZHX2 22882 NM_014943 /// XM_005250836 /// XM_005250837 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006402 // mRNA catabolic process // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay -46.38 44.46 -5.91 0.00 0.00 -4.44
218194_at 218194_at NM_015523 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015523.1 /DEF=Homo sapiens small fragment nuclease (DKFZP566E144), mRNA. /FEA=mRNA /GEN=DKFZP566E144 /PROD=small fragment nuclease /DB_XREF=gi:7661645 /UG=Hs.7527 small fragment nuclease /FL=gb:AF151872.1 gb:AL110239.1 gb:NM_015523.1 NM_015523 RNA exonuclease 2 REXO2 25996 NM_015523 0006139 // nucleobase-containing compound metabolic process // inferred from direct assay /// 0009117 // nucleotide metabolic process // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 145.98 680.21 5.91 0.00 0.00 -4.44
218277_s_at 218277_s_at NM_024612 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024612.1 /DEF=Homo sapiens hypothetical protein FLJ22060 (FLJ22060), mRNA. /FEA=mRNA /GEN=FLJ22060 /PROD=hypothetical protein FLJ22060 /DB_XREF=gi:13375824 /UG=Hs.29403 hypothetical protein FLJ22060 /FL=gb:NM_024612.1 NM_024612 DEAH (Asp-Glu-Ala-His) box polypeptide 40 DHX40 79665 NM_001166301 /// NM_024612 /// XM_003846599 /// XM_006722083 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -87.02 185.29 -5.91 0.00 0.00 -4.44
208999_at 208999_at D86957 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D86957.1 /DEF=Human mRNA for KIAA0202 gene, partial cds. /FEA=mRNA /GEN=KIAA0202 /DB_XREF=gi:1503987 /UG=Hs.80712 KIAA0202 protein /FL=gb:BC001329.1 D86957 septin 8 SEPT8 23176 NM_001098811 /// NM_001098812 /// NM_001098813 /// NM_015146 /// XM_005271927 /// XM_005271928 /// XM_005271929 /// XM_005271930 /// XM_005271931 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 96.03 165.66 5.90 0.00 0.00 -4.44
212114_at 212114_at BE967207 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE967207 /FEA=EST /DB_XREF=gi:11773627 /DB_XREF=est:601661094R1 /CLONE=IMAGE:3916174 /UG=Hs.165590 ribosomal protein S13 BE967207 ataxin 7-like 3B ATXN7L3B 552889 NM_001136262 164.83 239.44 5.90 0.00 0.00 -4.44
213574_s_at 213574_s_at AA861608 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA861608 /FEA=EST /DB_XREF=gi:2953748 /DB_XREF=est:ak34e01.s1 /CLONE=IMAGE:1407864 /UG=Hs.180446 karyopherin (importin) beta 1 AA861608 karyopherin (importin) beta 1 KPNB1 3837 NM_001276453 /// NM_002265 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006610 // ribosomal protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071782 // endoplasmic reticulum tubular network // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 178.57 313.34 5.90 0.00 0.00 -4.44
201596_x_at 201596_x_at NM_000224 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000224.1 /DEF=Homo sapiens keratin 18 (KRT18), mRNA. /FEA=mRNA /GEN=KRT18 /PROD=keratin 18 /DB_XREF=gi:4557887 /UG=Hs.65114 keratin 18 /FL=gb:BC000698.1 gb:BC000180.2 gb:BC004253.1 gb:M26326.1 gb:NM_000224.1 NM_000224 keratin 18 KRT18 3875 NM_000224 /// NM_199187 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0043000 // Golgi to plasma membrane CFTR protein transport // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045104 // intermediate filament cytoskeleton organization // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from electronic annotation /// 0097284 // hepatocyte apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005882 // intermediate filament // inferred from direct assay /// 0034451 // centriolar satellite // inferred from direct assay /// 0045095 // keratin filament // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0097110 // scaffold protein binding // inferred from physical interaction 447.20 700.10 5.90 0.00 0.00 -4.44
212109_at 212109_at AI590869 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI590869 /FEA=EST /DB_XREF=gi:4599917 /DB_XREF=est:tw88g03.x1 /CLONE=IMAGE:2266804 /UG=Hs.172035 hypothetical protein similar to mouse HN1 (Hematological and Neurological expressed sequence 1) AI590869 hematological and neurological expressed 1-like HN1L 90861 NM_144570 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 55.85 46.52 5.90 0.00 0.00 -4.44
221087_s_at 221087_s_at NM_014349 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014349.1 /DEF=Homo sapiens apolipoprotein L, 3 (APOL3), mRNA. /FEA=mRNA /GEN=APOL3 /PROD=apolipoprotein L, 3 /DB_XREF=gi:7656972 /UG=Hs.241535 apolipoprotein L, 3 /FL=gb:AY014905.1 gb:AF070675.1 gb:NM_014349.1 NM_014349 apolipoprotein L, 3 APOL3 80833 NM_014349 /// NM_030644 /// NM_145639 /// NM_145640 /// NM_145641 /// NM_145642 /// NR_027833 /// NR_027834 /// NR_027835 /// XM_006724322 /// XM_006724323 /// XM_006724324 /// XM_006724325 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // inferred from mutant phenotype /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005319 // lipid transporter activity // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation -93.33 72.46 -5.90 0.00 0.00 -4.44
213115_at 213115_at AL031177 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031177 /DEF=Human DNA sequence from clone 889N15 on chromosome Xq22.1-22.3. Contains part of the gene for a novel protein similar to X. laevis Cortical Thymocyte Marker CTX, the possibly alternatively spliced gene for 26S Proteasome subunit p28 (Ankyrin repea... /FEA=mRNA_3 /DB_XREF=gi:4071056 /UG=Hs.8763 Human DNA sequence from clone 889N15 on chromosome Xq22.1-22.3. Contains part of the gene for a novel protein similar to X. laevis Cortical Thymocyte Marker CTX, the possibly alternatively spliced gene for 26S Proteasome subunit p28 (Ankyrin repeat protei AL031177 autophagy related 4A, cysteine peptidase ATG4A 115201 NM_052936 /// NM_178270 /// NM_178271 /// XM_005262064 0000045 // autophagic vacuole assembly // not recorded /// 0000422 // mitochondrion degradation // not recorded /// 0006501 // C-terminal protein lipidation // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006612 // protein targeting to membrane // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006995 // cellular response to nitrogen starvation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0044805 // late nucleophagy // not recorded /// 0051697 // protein delipidation // not recorded 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded 0004197 // cysteine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 68.13 116.06 5.89 0.00 0.00 -4.44
218268_at 218268_at NM_022771 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022771.1 /DEF=Homo sapiens hypothetical protein FLJ12085 (FLJ12085), mRNA. /FEA=mRNA /GEN=FLJ12085 /PROD=hypothetical protein FLJ12085 /DB_XREF=gi:12232450 /UG=Hs.48827 hypothetical protein FLJ12085 /FL=gb:NM_022771.1 NM_022771 TBC1 domain family, member 15 TBC1D15 64786 NM_001146213 /// NM_001146214 /// NM_022771 /// NR_027449 /// XM_006719563 /// XM_006719564 /// XM_006719565 /// XM_006719566 /// XM_006719567 0032313 // regulation of Rab GTPase activity // inferred from sequence or structural similarity /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction -66.40 117.12 -5.89 0.00 0.00 -4.44
205051_s_at 205051_s_at NM_000222 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000222.1 /DEF=Homo sapiens v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog (KIT), mRNA. /FEA=mRNA /GEN=KIT /PROD=v-kit Hardy-Zuckerman 4 feline sarcoma viraloncogene homolog precursor /DB_XREF=gi:4557694 /UG=Hs.81665 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog /FL=gb:NM_000222.1 NM_000222 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog KIT 3815 NM_000222 /// NM_001093772 /// XM_005265740 /// XM_005265741 /// XM_005265742 /// XM_006714038 0000187 // activation of MAPK activity // inferred from direct assay /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0002318 // myeloid progenitor cell differentiation // inferred from electronic annotation /// 0002320 // lymphoid progenitor cell differentiation // inferred from electronic annotation /// 0002327 // immature B cell differentiation // inferred from sequence or structural similarity /// 0002371 // dendritic cell cytokine production // inferred from sequence or structural similarity /// 0002551 // mast cell chemotaxis // inferred from direct assay /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0007165 // signal transduction // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // traceable author statement /// 0007286 // spermatid development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from sequence or structural similarity /// 0008542 // visual learning // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008584 // male gonad development // inferred from expression pattern /// 0009314 // response to radiation // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010863 // positive regulation of phospholipase C activity // traceable author statement /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0019827 // stem cell maintenance // traceable author statement /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // traceable author statement /// 0030032 // lamellipodium assembly // inferred from sequence or structural similarity /// 0030097 // hemopoiesis // traceable author statement /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0030318 // melanocyte differentiation // inferred from sequence or structural similarity /// 0030318 // melanocyte differentiation // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031274 // positive regulation of pseudopodium assembly // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0032762 // mast cell cytokine production // inferred from direct assay /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from sequence or structural similarity /// 0035234 // ectopic germ cell programmed cell death // inferred from electronic annotation /// 0035855 // megakaryocyte development // inferred from sequence or structural similarity /// 0038093 // Fc receptor signaling pathway // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038109 // Kit signaling pathway // inferred from direct assay /// 0038162 // erythropoietin-mediated signaling pathway // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from mutant phenotype /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from mutant phenotype /// 0043069 // negative regulation of programmed cell death // inferred from electronic annotation /// 0043303 // mast cell degranulation // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043410 // positive regulation of MAPK cascade // inferred from mutant phenotype /// 0043473 // pigmentation // inferred from sequence or structural similarity /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0046427 // positive regulation of JAK-STAT cascade // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0048070 // regulation of developmental pigmentation // inferred from electronic annotation /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from sequence or structural similarity /// 0048863 // stem cell differentiation // inferred from sequence or structural similarity /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from sequence or structural similarity /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0060326 // cell chemotaxis // inferred from direct assay /// 0060374 // mast cell differentiation // inferred from sequence or structural similarity /// 0060374 // mast cell differentiation // traceable author statement /// 0070662 // mast cell proliferation // traceable author statement /// 0097067 // cellular response to thyroid hormone stimulus // inferred from electronic annotation /// 0097324 // melanocyte migration // inferred from sequence or structural similarity /// 0097326 // melanocyte adhesion // inferred from sequence or structural similarity 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009898 // cytoplasmic side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0002020 // protease binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0005020 // stem cell factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019955 // cytokine binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 111.57 215.04 5.89 0.00 0.00 -4.44
202498_s_at 202498_s_at BE550486 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE550486 /FEA=EST /DB_XREF=gi:9792178 /DB_XREF=est:7a27c01.x1 /CLONE=IMAGE:3219936 /UG=Hs.7594 solute carrier family 2 (facilitated glucose transporter), member 3 /FL=gb:M20681.1 gb:NM_006931.1 BE550486 solute carrier family 2 (facilitated glucose transporter), member 3 SLC2A3 6515 NM_006931 0005975 // carbohydrate metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0019852 // L-ascorbic acid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation -68.55 52.40 -5.89 0.00 0.00 -4.44
200897_s_at 200897_s_at NM_016081 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016081.1 /DEF=Homo sapiens palladin (KIAA0992), mRNA. /FEA=mRNA /GEN=KIAA0992 /PROD=palladin /DB_XREF=gi:7706354 /UG=Hs.194431 palladin /FL=gb:AF077041.1 gb:AF151909.1 gb:NM_016081.1 NM_016081 palladin, cytoskeletal associated protein PALLD 23022 NM_001166108 /// NM_001166109 /// NM_001166110 /// NM_016081 /// XM_005262861 /// XM_005262862 /// XM_005262863 /// XM_005262864 /// XM_005262865 /// XM_005262866 0007010 // cytoskeleton organization // non-traceable author statement 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0051371 // muscle alpha-actinin binding // traceable author statement 112.70 357.25 5.89 0.00 0.00 -4.44
221730_at 221730_at NM_000393 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_000393.1 /DEF=Homo sapiens collagen, type V, alpha 2 (COL5A2), mRNA. /FEA=CDS /GEN=COL5A2 /PROD=collagen, type V, alpha 2 /DB_XREF=gi:4502958 /UG=Hs.82985 collagen, type V, alpha 2 /FL=gb:NM_000393.1 NM_000393 collagen, type V, alpha 2 COL5A2 1290 NM_000393 0001501 // skeletal system development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from mutant phenotype /// 0030199 // collagen fibril organization // inferred from sequence or structural similarity /// 0030574 // collagen catabolic process // traceable author statement /// 0043588 // skin development // inferred from mutant phenotype /// 0043588 // skin development // inferred from sequence or structural similarity /// 0048592 // eye morphogenesis // inferred from mutant phenotype /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005588 // collagen type V trimer // inferred from mutant phenotype /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // non-traceable author statement 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -241.37 441.36 -5.88 0.00 0.00 -4.44
201623_s_at 201623_s_at BC000629 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000629.1 /DEF=Homo sapiens, Similar to aspartyl-tRNA synthetase, clone MGC:1562, mRNA, complete cds. /FEA=mRNA /PROD=Similar to aspartyl-tRNA synthetase /DB_XREF=gi:12653688 /UG=Hs.80758 aspartyl-tRNA synthetase /FL=gb:BC000629.1 gb:J05032.1 gb:NM_001349.1 BC000629 aspartyl-tRNA synthetase DARS 1615 NM_001293312 /// NM_001349 0006412 // translation // traceable author statement /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004046 // aminoacylase activity // traceable author statement /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -174.60 369.20 -5.88 0.00 0.00 -4.44
204517_at 204517_at BE962749 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE962749 /FEA=EST /DB_XREF=gi:11765968 /DB_XREF=est:601656143R1 /CLONE=IMAGE:3855754 /UG=Hs.110364 peptidylprolyl isomerase C (cyclophilin C) /FL=gb:BC002678.1 gb:NM_000943.1 BE962749 peptidylprolyl isomerase C (cyclophilin C) PPIC 5480 NM_000943 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016018 // cyclosporin A binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // traceable author statement 64.17 208.41 5.88 0.00 0.00 -4.44
217995_at 217995_at NM_021199 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021199.1 /DEF=Homo sapiens CGI-44 protein; sulfide dehydrogenase like (yeast) (CGI-44), mRNA. /FEA=mRNA /GEN=CGI-44 /PROD=CGI-44 protein; sulfide dehydrogenase like(yeast) /DB_XREF=gi:10864010 /UG=Hs.8185 CGI-44 protein; sulfide dehydrogenase like (yeast) /FL=gb:NM_021199.1 gb:AF151802.1 gb:AF118085.1 NM_021199 sulfide quinone reductase-like (yeast) SQRDL 58472 NM_001271213 /// NM_021199 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0000098 // sulfur amino acid catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070221 // sulfide oxidation, using sulfide:quinone oxidoreductase // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0070224 // sulfide:quinone oxidoreductase activity // traceable author statement -68.32 124.51 -5.88 0.00 0.00 -4.44
200015_s_at 200015_s_at NM_004404 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004404.1 /DEF=Homo sapiens neural precursor cell expressed, developmentally down-regulated 5 (NEDD5), mRNA. /FEA=mRNA /GEN=NEDD5 /PROD=neural precursor cell expressed, developmentallydown-regulated 5 /DB_XREF=gi:4758157 /UG=Hs.155595 neural precursor cell expressed, developmentally down-regulated 5 /FL=gb:D28540.1 gb:NM_004404.1 gb:D63878.1 NM_004404 septin 2 SEPT2 4735 NM_001008491 /// NM_001008492 /// NM_001282972 /// NM_001282973 /// NM_004404 /// NM_006155 /// XM_005247011 /// XM_005247012 /// XM_005247013 /// XM_006712546 /// XM_006712547 /// XM_006712548 /// XM_006712549 /// XM_006712550 0002036 // regulation of L-glutamate transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000145 // exocyst // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0060170 // ciliary membrane // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from electronic annotation 226.27 1125.76 5.87 0.00 0.00 -4.44
202377_at 202377_at AW026535 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW026535 /FEA=EST /DB_XREF=gi:5880065 /DB_XREF=est:wv14f10.x1 /CLONE=IMAGE:2529547 /UG=Hs.23581 leptin receptor gene-related protein /FL=gb:NM_017526.1 AW026535 leptin receptor overlapping transcript LEPROT 54741 NM_001198681 /// NM_001198683 /// NM_017526 0046426 // negative regulation of JAK-STAT cascade // inferred from direct assay /// 0060400 // negative regulation of growth hormone receptor signaling pathway // inferred from direct assay /// 2000009 // negative regulation of protein localization to cell surface // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 144.38 460.81 5.87 0.00 0.00 -4.44
206853_s_at 206853_s_at AL121964 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL121964 /DEF=Human DNA sequence from clone RP1-154G14 on chromosome 6q15-16.3. Contains the 3 end of the MAP3K7 gene for mitogen-activated protein kinase kinase kinase 7 (TGF-beta activated kinase 1, TAK1), ESTs, STSs and GSSs /FEA=mRNA_2 /DB_XREF=gi:6996467 /UG=Hs.7510 mitogen-activated protein kinase kinase kinase 7 /FL=gb:AB009356.1 gb:NM_003188.1 AL121964 mitogen-activated protein kinase kinase kinase 7 MAP3K7 6885 NM_003188 /// NM_145331 /// NM_145332 /// NM_145333 /// XM_006715553 0000165 // MAPK cascade // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // inferred from direct assay /// 0000187 // activation of MAPK activity // inferred from direct assay /// 0000187 // activation of MAPK activity // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001841 // neural tube formation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002726 // positive regulation of T cell cytokine production // inferred from mutant phenotype /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from mutant phenotype /// 0007252 // I-kappaB phosphorylation // inferred from direct assay /// 0007254 // JNK cascade // inferred from direct assay /// 0007254 // JNK cascade // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // inferred from mutant phenotype /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043507 // positive regulation of JUN kinase activity // inferred from direct assay /// 0043507 // positive regulation of JUN kinase activity // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // non-traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050870 // positive regulation of T cell activation // inferred by curator /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // inferred from direct assay /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008385 // IkappaB kinase complex // inferred from physical interaction /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004708 // MAP kinase kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0097110 // scaffold protein binding // inferred from direct assay 68.65 99.52 5.86 0.00 0.00 -4.44
202600_s_at 202600_s_at AI824012 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI824012 /FEA=EST /DB_XREF=gi:5444683 /DB_XREF=est:wj29e06.x1 /CLONE=IMAGE:2404258 /UG=Hs.155017 nuclear receptor interacting protein 1 /FL=gb:NM_003489.1 AI824012 nuclear receptor interacting protein 1 NRIP1 8204 NM_003489 /// XM_005261063 /// XM_005261065 /// XM_005261066 /// XM_006724054 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001543 // ovarian follicle rupture // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0019915 // lipid storage // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0030728 // ovulation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0035257 // nuclear hormone receptor binding // inferred from physical interaction /// 0035259 // glucocorticoid receptor binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // non-traceable author statement -118.08 131.61 -5.86 0.00 0.00 -4.44
201891_s_at 201891_s_at NM_004048 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004048.1 /DEF=Homo sapiens beta-2-microglobulin (B2M), mRNA. /FEA=mRNA /GEN=B2M /PROD=beta-2-microglobulin /DB_XREF=gi:4757825 /UG=Hs.75415 beta-2-microglobulin /FL=gb:AB021288.1 gb:NM_004048.1 NM_004048 beta-2-microglobulin B2M 567 NM_004048 /// XM_005254549 /// XM_006725182 0001895 // retina homeostasis // inferred from expression pattern /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // inferred from electronic annotation /// 0006955 // immune response // non-traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0042026 // protein refolding // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0031905 // early endosome lumen // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction -674.20 2511.10 -5.85 0.00 0.00 -4.44
200062_s_at 200062_s_at L05095 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L05095.1 /DEF=Homo sapiens ribosomal protein L30 mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L30 /DB_XREF=gi:388034 /UG=Hs.111222 ribosomal protein L30 /FL=gb:L05095.1 gb:NM_000989.1 L05095 ribosomal protein L30 RPL30 6156 NM_000989 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -609.28 3060.14 -5.85 0.00 0.00 -4.44
201023_at 201023_at NM_005642 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005642.1 /DEF=Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase II, F, 55kD (TAF2F), mRNA. /FEA=mRNA /GEN=TAF2F /PROD=TATA box binding protein (TBP)-associatedfactor, RNA polymerase II, F, 55kD /DB_XREF=gi:5032148 /UG=Hs.155188 TATA box binding protein (TBP)-associated factor, RNA polymerase II, F, 55kD /FL=gb:NM_005642.1 gb:U18062.1 NM_005642 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa TAF7 6879 NM_005642 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000296 // spermine transport // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0030520 // intracellular estrogen receptor signaling pathway // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0008024 // positive transcription elongation factor complex b // inferred from direct assay /// 0033276 // transcription factor TFTC complex // inferred from direct assay /// 0071339 // MLL1 complex // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0042809 // vitamin D receptor binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046966 // thyroid hormone receptor binding // inferred from physical interaction 140.85 313.73 5.85 0.00 0.00 -4.44
212872_s_at 212872_s_at AK023092 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023092.1 /DEF=Homo sapiens cDNA FLJ13030 fis, clone NT2RP3001111, highly similar to Homo sapiens TRF-proximal protein mRNA. /FEA=mRNA /DB_XREF=gi:10434851 /UG=Hs.93796 DKFZP586D2223 protein AK023092 mediator complex subunit 20 MED20 9477 NM_004275 0006351 // transcription, DNA-templated // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0016592 // mediator complex // non-traceable author statement 0001104 // RNA polymerase II transcription cofactor activity // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 57.85 78.08 5.85 0.00 0.00 -4.44
201696_at 201696_at NM_005626 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005626.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 4 (SFRS4), mRNA. /FEA=mRNA /GEN=SFRS4 /PROD=splicing factor, arginineserine-rich 4 /DB_XREF=gi:5032088 /UG=Hs.76122 splicing factor, arginineserine-rich 4 /FL=gb:BC002781.1 gb:L14076.1 gb:NM_005626.1 NM_005626 serine/arginine-rich splicing factor 4 SRSF4 6429 NM_005626 /// XM_006710815 /// XM_006710816 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 100.10 230.38 5.85 0.00 0.00 -4.44
212227_x_at 212227_x_at W67644 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W67644 /FEA=EST /DB_XREF=gi:1376515 /DB_XREF=est:zd42a07.s1 /CLONE=IMAGE:343284 /UG=Hs.150580 putative translation initiation factor W67644 eukaryotic translation initiation factor 1 EIF1 10209 NM_005801 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // traceable author statement /// 0006950 // response to stress // non-traceable author statement /// 0009048 // dosage compensation by inactivation of X chromosome // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement 0003743 // translation initiation factor activity // non-traceable author statement /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -974.33 2332.86 -5.85 0.00 0.00 -4.44
218259_at 218259_at NM_014048 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014048.1 /DEF=Homo sapiens KIAA1243 protein (KIAA1243), mRNA. /FEA=mRNA /GEN=KIAA1243 /PROD=NPD001 protein /DB_XREF=gi:7662513 /UG=Hs.151076 KIAA1243 protein /FL=gb:AF078853.1 gb:NM_014048.1 NM_014048 MKL/myocardin-like 2 MKL2 57496 NM_014048 /// XM_005255451 /// XM_005255452 /// XM_005255453 /// XM_005255455 /// XM_005255457 /// XM_006720908 /// XM_006720909 /// XM_006720910 /// XM_006720911 /// XM_006720912 /// XM_006720913 /// XM_006720914 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0010467 // gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045844 // positive regulation of striated muscle tissue development // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred by curator /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 70.53 101.41 5.85 0.00 0.00 -4.44
208862_s_at 208862_s_at AW073672 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW073672 /FEA=EST /DB_XREF=gi:6028670 /DB_XREF=est:xb01b04.x1 /CLONE=IMAGE:2574991 /UG=Hs.166011 catenin (cadherin-associated protein), delta 1 /FL=gb:AF062328.1 AW073672 catenin (cadherin-associated protein), delta 1 /// TMX2-CTNND1 readthrough (NMD candidate) CTNND1 /// TMX2-CTNND1 1500 /// 100528016 NM_001085458 /// NM_001085459 /// NM_001085460 /// NM_001085461 /// NM_001085462 /// NM_001085463 /// NM_001085464 /// NM_001085465 /// NM_001085466 /// NM_001085467 /// NM_001085468 /// NM_001085469 /// NM_001206883 /// NM_001206884 /// NM_001206885 /// NM_001206886 /// NM_001206887 /// NM_001206888 /// NM_001206889 /// NM_001206890 /// NM_001206891 /// NM_001331 /// NR_037646 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0045216 // cell-cell junction organization // traceable author statement /// 0060690 // epithelial cell differentiation involved in salivary gland development // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005915 // zonula adherens // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation 113.00 306.12 5.85 0.00 0.00 -4.44
202961_s_at 202961_s_at NM_004889 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004889.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2 (ATP5J2), mRNA. /FEA=mRNA /GEN=ATP5J2 /PROD=ATP synthase, H+ transporting, mitochondrial F0complex, subunit f, isoform 2 /DB_XREF=gi:4757811 /UG=Hs.155751 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2 /FL=gb:BC003678.1 gb:AF047436.1 gb:NM_004889.1 NM_004889 ARMC2 antisense RNA 1 /// ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 ARMC2-AS1 /// ATP5J2 9551 /// 101929716 NM_001003713 /// NM_001003714 /// NM_001039178 /// NM_001190353 /// NM_001190354 /// NM_004889 /// NR_104137 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015992 // proton transport // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005753 // mitochondrial proton-transporting ATP synthase complex // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator 185.95 931.00 5.85 0.00 0.00 -4.44
218718_at 218718_at NM_016205 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016205.1 /DEF=Homo sapiens platelet derived growth factor C (PDGFC), mRNA. /FEA=mRNA /GEN=PDGFC /PROD=secretory growth factor-like protein fallotein /DB_XREF=gi:9994186 /UG=Hs.43080 platelet derived growth factor C /FL=gb:AF091434.1 gb:AF244813.1 gb:AB033831.1 gb:NM_016205.1 NM_016205 platelet derived growth factor C PDGFC 56034 NM_016205 /// NR_036641 /// XM_006714273 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction -86.65 151.82 -5.84 0.00 0.00 -4.44
201670_s_at 201670_s_at M68956 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M68956.1 /DEF=Human myristoylated alanine-rich C-kinase substrate mRNA, complete cds. /FEA=mRNA /GEN=MACS /PROD=myristoylated alanine-rich C-kinase substrate /DB_XREF=gi:187386 /UG=Hs.75607 myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L) /FL=gb:NM_002356.4 gb:M68956.1 gb:D10522.1 M68956 myristoylated alanine-rich protein kinase C substrate MARCKS 4082 NM_002356 0006112 // energy reserve metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // traceable author statement -282.65 827.73 -5.83 0.00 0.00 -4.44
209087_x_at 209087_x_at AF089868 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF089868.1 /DEF=Homo sapiens cell surface glycoprotein P1H12 precursor, mRNA, complete cds. /FEA=mRNA /PROD=cell surface glycoprotein P1H12 precursor /DB_XREF=gi:4336423 /UG=Hs.211579 melanoma adhesion molecule /FL=gb:AF089868.1 gb:NM_006500.1 AF089868 melanoma cell adhesion molecule MCAM 4162 NM_006500 /// XM_005271551 /// XM_005271552 /// XM_006718836 /// XM_006718837 /// XM_006718838 0003094 // glomerular filtration // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0061042 // vascular wound healing // inferred from expression pattern 0005886 // plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 376.65 1299.25 5.83 0.00 0.00 -4.44
212116_at 212116_at NM_006510 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_006510.1 /DEF=Homo sapiens ret finger protein (RFP), mRNA. /FEA=CDS /GEN=RFP /PROD=ret finger protein /DB_XREF=gi:5730008 /UG=Hs.142653 ret finger protein /FL=gb:AF230393.1 gb:J03407.1 gb:NM_006510.1 NM_006510 tripartite motif containing 27 TRIM27 5987 NM_006510 /// NM_030950 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002820 // negative regulation of adaptive immune response // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0032720 // negative regulation of tumor necrosis factor production // inferred from mutant phenotype /// 0032897 // negative regulation of viral transcription // inferred from direct assay /// 0034314 // Arp2/3 complex-mediated actin nucleation // inferred from direct assay /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay /// 0045087 // innate immune response // inferred from direct assay /// 0045814 // negative regulation of gene expression, epigenetic // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0070206 // protein trimerization // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from mutant phenotype /// 0072643 // interferon-gamma secretion // inferred from mutant phenotype /// 0090281 // negative regulation of calcium ion import // inferred from mutant phenotype /// 1900041 // negative regulation of interleukin-2 secretion // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016605 // PML body // inferred from electronic annotation /// 0030904 // retromer complex // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0003676 // nucleic acid binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // traceable author statement 80.10 153.55 5.83 0.00 0.00 -4.44
216041_x_at 216041_x_at AK023348 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023348.1 /DEF=Homo sapiens cDNA FLJ13286 fis, clone OVARC1001154, highly similar to Homo sapiens clone 24720 epithelin 1 and 2 mRNA. /FEA=mRNA /DB_XREF=gi:10435243 /UG=Hs.180577 granulin AK023348 granulin GRN 2896 NM_001012479 /// NM_002087 /// XM_005257253 0001835 // blastocyst hatching // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -94.85 471.52 -5.83 0.00 0.00 -4.44
208635_x_at 208635_x_at BF976260 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF976260 /FEA=EST /DB_XREF=gi:12343475 /DB_XREF=est:602245139F1 /CLONE=IMAGE:4336329 /UG=Hs.158164 ATP-binding cassette, sub-family B (MDRTAP), member 2 /FL=gb:BC001849.1 BF976260 nascent polypeptide-associated complex alpha subunit NACA 4666 NM_001113201 /// NM_001113202 /// NM_001113203 /// NM_005594 /// NR_045277 /// XM_006719412 /// XM_006719413 /// XM_006719414 /// XM_006719415 /// XM_006719416 /// XM_006719417 /// XM_006719418 /// XM_006719419 /// XM_006719420 /// XM_006719421 0003231 // cardiac ventricle development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0010664 // negative regulation of striated muscle cell apoptotic process // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043403 // skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0048633 // positive regulation of skeletal muscle tissue growth // inferred from sequence or structural similarity /// 0048742 // regulation of skeletal muscle fiber development // inferred from sequence or structural similarity /// 0061384 // heart trabecula morphogenesis // inferred from sequence or structural similarity /// 1901227 // negative regulation of transcription from RNA polymerase II promoter involved in heart development // inferred from sequence or structural similarity /// 1901228 // positive regulation of transcription from RNA polymerase II promoter involved in heart development // inferred from sequence or structural similarity /// 2000138 // positive regulation of cell proliferation involved in heart morphogenesis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005854 // nascent polypeptide-associated complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0017025 // TBP-class protein binding // inferred from sequence or structural similarity -562.35 2654.68 -5.83 0.00 0.00 -4.44
208746_x_at 208746_x_at AF070655 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF070655.1 /DEF=Homo sapiens F1F0-type ATP synthase subunit g mRNA, complete cds. /FEA=mRNA /PROD=F1F0-type ATP synthase subunit g /DB_XREF=gi:4454685 /UG=Hs.107476 ATP synthase, H+ transporting, mitochondrial F1F0, subunit g /FL=gb:AF070655.1 AF070655 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G ATP5L 10632 NM_006476 /// NR_033759 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator 184.55 1090.00 5.83 0.00 0.00 -4.44
218889_at 218889_at NM_022451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022451.1 /DEF=Homo sapiens hypothetical protein FLJ12820 (FLJ12820), mRNA. /FEA=mRNA /GEN=FLJ12820 /PROD=hypothetical protein FLJ12820 /DB_XREF=gi:11967984 /UG=Hs.74899 hypothetical protein FLJ12820 /FL=gb:NM_022451.1 NM_022451 nucleolar complex associated 3 homolog (S. cerevisiae) NOC3L 64318 NM_022451 /// XM_005270048 0045444 // fat cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 65.25 94.67 5.83 0.00 0.00 -4.44
218642_s_at 218642_s_at NM_024300 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024300.1 /DEF=Homo sapiens hypothetical protein MGC2217 (MGC2217), mRNA. /FEA=mRNA /GEN=MGC2217 /PROD=hypothetical protein MGC2217 /DB_XREF=gi:13236525 /UG=Hs.323164 hypothetical protein MGC2217 /FL=gb:BC002546.1 gb:NM_024300.1 NM_024300 coiled-coil-helix-coiled-coil-helix domain containing 7 CHCHD7 79145 NM_001011667 /// NM_001011668 /// NM_001011669 /// NM_001011670 /// NM_001011671 /// NM_024300 /// XR_428340 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 61.20 61.65 5.83 0.00 0.00 -4.44
213548_s_at 213548_s_at BG257762 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG257762 /FEA=EST /DB_XREF=gi:12767578 /DB_XREF=est:602377462F1 /CLONE=IMAGE:4508319 /UG=Hs.283690 hypothetical protein BG257762 CDV3 homolog (mouse) CDV3 55573 NM_001134422 /// NM_001134423 /// NM_001282762 /// NM_001282763 /// NM_001282764 /// NM_001282765 /// NM_017548 /// XM_005247588 /// XM_005247589 /// XM_005247590 /// XM_005247591 /// XM_005247592 /// XM_005247594 0008283 // cell proliferation // non-traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay -166.20 193.80 -5.82 0.00 0.00 -4.44
201517_at 201517_at BC001255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001255.1 /DEF=Homo sapiens, nuclear cap binding protein subunit 2, 20kD, clone MGC:4991, mRNA, complete cds. /FEA=mRNA /PROD=nuclear cap binding protein subunit 2, 20kD /DB_XREF=gi:12654824 /UG=Hs.240770 nuclear cap binding protein subunit 2, 20kD /FL=gb:D59253.1 gb:BC001255.1 gb:NM_007362.1 BC001255 nuclear cap binding protein subunit 2, 20kDa NCBP2 22916 NM_001042540 /// NM_007362 /// XM_005269313 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from direct assay /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // inferred from direct assay /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006408 // snRNA export from nucleus // inferred from sequence or structural similarity /// 0006408 // snRNA export from nucleus // non-traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008334 // histone mRNA metabolic process // traceable author statement /// 0008380 // RNA splicing // inferred from sequence or structural similarity /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement /// 0045292 // mRNA cis splicing, via spliceosome // inferred from direct assay /// 0046833 // positive regulation of RNA export from nucleus // inferred from sequence or structural similarity /// 0050434 // positive regulation of viral transcription // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005845 // mRNA cap binding complex // inferred from direct assay /// 0005846 // nuclear cap binding complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000339 // RNA cap binding // non-traceable author statement /// 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 77.05 193.65 5.82 0.00 0.00 -4.44
208980_s_at 208980_s_at M26880 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M26880.1 /DEF=Human ubiquitin mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:340067 /UG=Hs.183704 ubiquitin C /FL=gb:M17597.1 gb:M26880.1 M26880 ubiquitin C UBC 7316 NM_021009 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007144 // female meiosis I // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007254 // JNK cascade // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008584 // male gonad development // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010992 // ubiquitin homeostasis // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0021888 // hypothalamus gonadotrophin-releasing hormone neuron development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0032479 // regulation of type I interferon production // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060612 // adipose tissue development // inferred from electronic annotation /// 0060613 // fat pad development // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement /// 0072520 // seminiferous tubule development // inferred from electronic annotation /// 0075733 // intracellular transport of virus // traceable author statement /// 0097009 // energy homeostasis // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0030666 // endocytic vesicle membrane // traceable author statement 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -1334.78 3002.99 -5.82 0.00 0.00 -4.44
213640_s_at 213640_s_at BE503425 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE503425 /FEA=EST /DB_XREF=gi:9705833 /DB_XREF=est:7a18b11.x1 /CLONE=IMAGE:3219069 /UG=Hs.102267 lysyl oxidase BE503425 lysyl oxidase LOX 4015 NM_001178102 /// NM_002317 0001568 // blood vessel development // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0048251 // elastic fiber assembly // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0004720 // protein-lysine 6-oxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -64.38 76.66 -5.82 0.00 0.00 -4.44
214794_at 214794_at BF669264 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF669264 /FEA=EST /DB_XREF=gi:11943159 /DB_XREF=est:602120534F1 /CLONE=IMAGE:4277696 /UG=Hs.5181 proliferation-associated 2G4, 38kD BF669264 proliferation-associated 2G4, 38kDa PA2G4 5036 NM_006191 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009987 // cellular process // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 93.85 112.15 5.81 0.00 0.00 -4.44
213341_at 213341_at AI862658 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI862658 /FEA=EST /DB_XREF=gi:5526765 /DB_XREF=est:wj27d03.x1 /CLONE=IMAGE:2404037 /UG=Hs.47367 hypothetical protein from EUROIMAGE 783647 AI862658 fem-1 homolog c (C. elegans) FEM1C 56929 NM_020177 /// XM_005272035 0016567 // protein ubiquitination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -52.70 107.08 -5.80 0.00 0.00 -4.44
214167_s_at 214167_s_at AA555113 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA555113 /FEA=EST /DB_XREF=gi:2325652 /DB_XREF=est:nj40g05.s1 /CLONE=IMAGE:995000 /UG=Hs.73742 ribosomal protein, large, P0 AA555113 ribosomal protein, large, P0 RPLP0 6175 NM_001002 /// NM_053275 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -478.05 2148.65 -5.80 0.00 0.00 -4.44
202505_at 202505_at NM_003092 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003092.1 /DEF=Homo sapiens small nuclear ribonucleoprotein polypeptide B (SNRPB2), mRNA. /FEA=mRNA /GEN=SNRPB2 /PROD=small nuclear ribonucleoprotein polypeptide B /DB_XREF=gi:4507122 /UG=Hs.82575 small nuclear ribonucleoprotein polypeptide B /FL=gb:M15841.1 gb:NM_003092.1 NM_003092 small nuclear ribonucleoprotein polypeptide B SNRPB2 6629 NM_003092 /// NM_198220 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005686 // U2 snRNP // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017069 // snRNA binding // inferred from electronic annotation 254.45 483.57 5.80 0.00 0.00 -4.44
217591_at 217591_at BF725121 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF725121 /FEA=EST /DB_XREF=gi:12041032 /DB_XREF=est:bx12e01.x1 /CLONE=bx12e01 /UG=Hs.272108 ESTs BF725121 SKI-like proto-oncogene SKIL 6498 NM_001145097 /// NM_001145098 /// NM_001248008 /// NM_005414 /// XM_005247721 /// XM_006713735 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001825 // blastocyst formation // inferred from electronic annotation /// 0002260 // lymphocyte homeostasis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // not recorded /// 0042981 // regulation of apoptotic process // inferred from sequence or structural similarity /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from sequence or structural similarity /// 0046677 // response to antibiotic // inferred from expression pattern /// 0050772 // positive regulation of axonogenesis // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // inferred from mutant phenotype /// 0070207 // protein homotrimerization // inferred from direct assay /// 0070208 // protein heterotrimerization // inferred from direct assay /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070848 // response to growth factor // inferred from direct assay /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation /// 1902231 // positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from physical interaction 48.45 42.80 5.79 0.00 0.00 -4.44
205100_at 205100_at NM_005110 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005110.1 /DEF=Homo sapiens glutamine-fructose-6-phosphate transaminase 2 (GFPT2), mRNA. /FEA=mRNA /GEN=GFPT2 /PROD=glutamine-fructose-6-phosphate transaminase 2 /DB_XREF=gi:4826741 /UG=Hs.30332 glutamine-fructose-6-phosphate transaminase 2 /FL=gb:BC000012.1 gb:AB016789.1 gb:NM_005110.1 NM_005110 glutamine-fructose-6-phosphate transaminase 2 GFPT2 9945 NM_005110 /// XM_006714942 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006002 // fructose 6-phosphate metabolic process // traceable author statement /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // inferred from electronic annotation /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0004360 // glutamine-fructose-6-phosphate transaminase (isomerizing) activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation -53.00 69.05 -5.79 0.00 0.00 -4.44
36030_at 36030_at AL080214 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL080214:Homo sapiens mRNA; cDNA DKFZp586I2223 (from clone DKFZp586I2223) /cds=(0,318) /gb=AL080214 /gi=5262704 /ug=Hs.46659 /len=1272 AL080214 intermediate filament family orphan 1 IFFO1 25900 NM_001039670 /// NM_001193457 /// NM_001193459 /// NM_015438 /// NM_080730 /// NM_080731 /// NR_036467 /// XM_006718973 /// XM_006718974 /// XM_006718975 /// XM_006718976 /// XM_006718977 /// XM_006718978 /// XM_006718979 /// XM_006718980 /// XM_006718981 /// XM_006718982 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 53.85 110.75 5.79 0.00 0.00 -4.44
201767_s_at 201767_s_at NM_018127 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018127.2 /DEF=Homo sapiens putative prostate cancer susceptibility protein (HPC2), mRNA. /FEA=mRNA /GEN=HPC2 /PROD=putative prostate cancer susceptibility protein /DB_XREF=gi:11875212 /UG=Hs.12124 putative prostate cancer susceptibility protein /FL=gb:AF304370.1 gb:NM_018127.2 gb:BC001939.1 gb:BC004158.1 NM_018127 elaC ribonuclease Z 2 ELAC2 60528 NM_001165962 /// NM_018127 /// NM_173717 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0072684 // mitochondrial tRNA 3'-trailer cleavage, endonucleolytic // inferred from mutant phenotype /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 53.30 86.30 5.79 0.00 0.00 -4.45
209289_at 209289_at AI700518 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI700518 /FEA=EST /DB_XREF=gi:4988418 /DB_XREF=est:we37d09.x1 /CLONE=IMAGE:2343281 /UG=Hs.33287 nuclear factor IB /FL=gb:BC001283.1 gb:U85193.1 gb:NM_005596.1 AI700518 nuclear factor I/B NFIB 4781 NM_001190737 /// NM_001190738 /// NM_001282787 /// NM_005596 /// XM_005251467 /// XM_005251468 /// XM_005251469 /// XM_005251470 /// XM_005251471 /// XM_006716773 /// XM_006716774 /// XM_006716775 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002062 // chondrocyte differentiation // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from sequence or structural similarity /// 0021740 // principal sensory nucleus of trigeminal nerve development // inferred from sequence or structural similarity /// 0021960 // anterior commissure morphogenesis // inferred from sequence or structural similarity /// 0030324 // lung development // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060486 // Clara cell differentiation // inferred from sequence or structural similarity /// 0060509 // Type I pneumocyte differentiation // inferred from sequence or structural similarity /// 0060510 // Type II pneumocyte differentiation // inferred from sequence or structural similarity /// 0061141 // lung ciliated cell differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 2000791 // negative regulation of mesenchymal cell proliferation involved in lung development // inferred from sequence or structural similarity /// 2000795 // negative regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0044300 // cerebellar mossy fiber // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 196.77 433.59 5.79 0.00 0.00 -4.45
202324_s_at 202324_s_at NM_022735 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022735.1 /DEF=Homo sapiens golgi resident protein GCP60 (GCP60), mRNA. /FEA=mRNA /GEN=GCP60 /PROD=golgi resident protein GCP60 /DB_XREF=gi:12232390 /UG=Hs.6831 golgi resident protein GCP60 /FL=gb:AB043587.1 gb:NM_022735.1 NM_022735 acyl-CoA binding domain containing 3 ACBD3 64746 NM_022735 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 79.67 150.11 5.79 0.00 0.00 -4.45
200609_s_at 200609_s_at NM_017491 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017491.1 /DEF=Homo sapiens WD repeat domain 1 (WDR1), transcript variant 1, mRNA. /FEA=mRNA /GEN=WDR1 /PROD=WD repeat-containing protein 1, isoform 1 /DB_XREF=gi:9257256 /UG=Hs.85100 WD repeat domain 1 /FL=gb:BC000201.1 gb:BC002489.1 gb:AF020056.1 gb:AB010427.2 gb:NM_017491.1 NM_017491 WD repeat domain 1 WDR1 9948 NM_005112 /// NM_017491 /// XM_006713988 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007605 // sensory perception of sound // traceable author statement /// 0030168 // platelet activation // traceable author statement 0002102 // podosome // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 268.45 774.70 5.78 0.00 0.00 -4.45
218299_at 218299_at NM_022338 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022338.1 /DEF=Homo sapiens chromosome 11 open reading frame 24 (C11ORF24), mRNA. /FEA=mRNA /GEN=C11ORF24 /PROD=chromosome 11 open reading frame 24 /DB_XREF=gi:11641238 /UG=Hs.303025 chromosome 11 open reading frame 24 /FL=gb:AF264781.1 gb:NM_022338.1 NM_022338 chromosome 11 open reading frame 24 C11orf24 53838 NM_022338 /// XM_005274053 /// XM_005274054 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 49.10 37.45 5.78 0.00 0.00 -4.45
209825_s_at 209825_s_at BC002906 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002906.1 /DEF=Homo sapiens, Similar to uridine monophosphate kinase, clone MGC:10318, mRNA, complete cds. /FEA=mRNA /PROD=Similar to uridine monophosphate kinase /DB_XREF=gi:12804106 /UG=Hs.75939 uridine monophosphate kinase /FL=gb:BC002906.1 gb:AF236637.1 BC002906 microRNA 3658 /// uridine-cytidine kinase 2 MIR3658 /// UCK2 7371 /// 100500832 NM_012474 /// NR_037431 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0007631 // feeding behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0043097 // pyrimidine nucleoside salvage // traceable author statement /// 0044206 // UMP salvage // inferred from electronic annotation /// 0044211 // CTP salvage // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048678 // response to axon injury // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0071453 // cellular response to oxygen levels // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004140 // dephospho-CoA kinase activity // inferred from electronic annotation /// 0004849 // uridine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019206 // nucleoside kinase activity // not recorded -80.20 280.43 -5.78 0.00 0.00 -4.45
218108_at 218108_at NM_018108 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018108.1 /DEF=Homo sapiens hypothetical protein FLJ10483 (FLJ10483), mRNA. /FEA=mRNA /GEN=FLJ10483 /PROD=hypothetical protein FLJ10483 /DB_XREF=gi:8922451 /UG=Hs.6877 hypothetical protein FLJ10483 /FL=gb:NM_018108.1 NM_018108 ubiquitin protein ligase E3 component n-recognin 7 (putative) UBR7 55148 NM_001100417 /// NM_175748 /// NR_038150 0016567 // protein ubiquitination // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 51.58 107.26 5.78 0.00 0.00 -4.45
202950_at 202950_at NM_001889 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001889.1 /DEF=Homo sapiens crystallin, zeta (quinone reductase) (CRYZ), mRNA. /FEA=mRNA /GEN=CRYZ /PROD=crystallin, zeta (quinone reductase) /DB_XREF=gi:4503066 /UG=Hs.83114 crystallin, zeta (quinone reductase) /FL=gb:L13278.1 gb:S58039.1 gb:NM_001889.1 NM_001889 crystallin, zeta (quinone reductase) CRYZ 1429 NM_001130042 /// NM_001130043 /// NM_001134759 /// NM_001889 /// XM_005270491 0007601 // visual perception // traceable author statement /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from physical interaction /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0003960 // NADPH:quinone reductase activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from direct assay /// 0070404 // NADH binding // inferred from direct assay 54.40 82.95 5.78 0.00 0.00 -4.45
211340_s_at 211340_s_at M28882 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M28882.1 /DEF=Human MUC18 glycoprotein mRNA, complete cds. /FEA=mRNA /PROD=MUC18 glycoprotein /DB_XREF=gi:529723 /UG=Hs.211579 melanoma adhesion molecule /FL=gb:M28882.1 M28882 melanoma cell adhesion molecule /// microRNA 6756 MCAM /// MIR6756 4162 /// 102465453 NM_006500 /// NR_106814 /// XM_005271551 /// XM_005271552 /// XM_006718836 /// XM_006718837 /// XM_006718838 0003094 // glomerular filtration // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0061042 // vascular wound healing // inferred from expression pattern 0005886 // plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 381.48 931.79 5.77 0.00 0.00 -4.45
208881_x_at 208881_x_at BC005247 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005247.1 /DEF=Homo sapiens, isopentenyl-diphosphate delta isomerase, clone MGC:12281, mRNA, complete cds. /FEA=mRNA /PROD=isopentenyl-diphosphate delta isomerase /DB_XREF=gi:13528899 /UG=Hs.76038 isopentenyl-diphosphate delta isomerase /FL=gb:BC005247.1 BC005247 isopentenyl-diphosphate delta isomerase 1 IDI1 3422 NM_004508 /// XM_005252445 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0035634 // response to stilbenoid // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0050992 // dimethylallyl diphosphate biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000287 // magnesium ion binding // inferred from direct assay /// 0004452 // isopentenyl-diphosphate delta-isomerase activity // inferred from direct assay /// 0004452 // isopentenyl-diphosphate delta-isomerase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 77.42 134.61 5.77 0.00 0.00 -4.45
205471_s_at 205471_s_at AW772082 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW772082 /FEA=EST /DB_XREF=gi:7704144 /DB_XREF=est:hn67b07.x1 /CLONE=IMAGE:3032917 /UG=Hs.63931 dachshund (Drosophila) homolog /FL=gb:NM_004392.1 gb:AF102546.1 AW772082 dachshund family transcription factor 1 DACH1 1602 NM_004392 /// NM_080759 /// NM_080760 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001967 // suckling behavior // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010944 // negative regulation of transcription by competitive promoter binding // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0046545 // development of primary female sexual characteristics // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0051123 // RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation /// 0060244 // negative regulation of cell proliferation involved in contact inhibition // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001075 // RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly // inferred from electronic annotation /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 62.12 61.19 5.77 0.00 0.00 -4.45
202619_s_at 202619_s_at AI754404 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI754404 /FEA=EST /DB_XREF=gi:5132668 /DB_XREF=est:cr24g06.x1 /CLONE=HBMSC_cr24g06 /UG=Hs.41270 procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2 /FL=gb:U84573.1 gb:NM_000935.1 AI754404 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 PLOD2 5352 NM_000935 /// NM_182943 /// XM_005247535 /// XM_005247536 0001666 // response to hypoxia // inferred from expression pattern /// 0006464 // cellular protein modification process // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005581 // collagen trimer // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005506 // iron ion binding // inferred from electronic annotation /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -450.40 724.20 -5.76 0.00 0.00 -4.45
218147_s_at 218147_s_at NM_018446 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018446.1 /DEF=Homo sapiens AD-017 protein (LOC55830), mRNA. /FEA=mRNA /GEN=LOC55830 /PROD=AD-017 protein /DB_XREF=gi:8923854 /UG=Hs.283737 AD-017 protein /FL=gb:BC001418.1 gb:AF157318.1 gb:NM_018446.1 NM_018446 glycosyltransferase 8 domain containing 1 GLT8D1 55830 NM_001010983 /// NM_001278280 /// NM_001278281 /// NM_018446 /// NM_152932 /// XM_006713260 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 45.68 66.09 5.76 0.00 0.00 -4.45
201022_s_at 201022_s_at NM_006870 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006870.2 /DEF=Homo sapiens destrin (actin depolymerizing factor) (ADF), mRNA. /FEA=mRNA /GEN=ADF /PROD=destrin (actin depolymerizing factor) /DB_XREF=gi:6466447 /UG=Hs.82306 destrin (actin depolymerizing factor) /FL=gb:NM_006870.2 NM_006870 destrin (actin depolymerizing factor) DSTN 11034 NM_001011546 /// NM_006870 0000910 // cytokinesis // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0008154 // actin polymerization or depolymerization // traceable author statement /// 0030042 // actin filament depolymerization // inferred from electronic annotation /// 0030836 // positive regulation of actin filament depolymerization // inferred from electronic annotation /// 0051014 // actin filament severing // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation -137.58 1398.24 -5.76 0.00 0.00 -4.45
209860_s_at 209860_s_at J04543 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J04543.1 /DEF=Human synexin mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:338243 /UG=Hs.78637 annexin A7 /FL=gb:BC002632.1 gb:J04543.1 gb:NM_001156.2 J04543 annexin A7 ANXA7 310 NM_001156 /// NM_004034 /// XM_005269738 /// XM_005269739 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006914 // autophagy // inferred from mutant phenotype /// 0007599 // hemostasis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009992 // cellular water homeostasis // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0035176 // social behavior // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0061025 // membrane fusion // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0031982 // vesicle // inferred from electronic annotation /// 0042584 // chromaffin granule membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -112.97 385.96 -5.75 0.00 0.00 -4.45
209175_at 209175_at AK001135 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001135.1 /DEF=Homo sapiens cDNA FLJ10273 fis, clone HEMBB1001137, highly similar to Homo sapiens mRNA for putative phospholipase. /FEA=mRNA /DB_XREF=gi:7022202 /UG=Hs.300208 Sec23-interacting protein p125 /FL=gb:BC002540.1 gb:AB019435.1 gb:NM_007190.1 AK001135 SEC23 interacting protein SEC23IP 11196 NM_007190 /// NR_037771 /// XM_005269469 /// XM_005269470 /// XR_246061 0006886 // intracellular protein transport // traceable author statement /// 0007030 // Golgi organization // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 66.97 123.84 5.75 0.00 0.00 -4.45
205672_at 205672_at NM_000380 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000380.1 /DEF=Homo sapiens xeroderma pigmentosum, complementation group A (XPA), mRNA. /FEA=mRNA /GEN=XPA /PROD=xeroderma pigmentosum, complementation group A /DB_XREF=gi:4507936 /UG=Hs.192803 xeroderma pigmentosum, complementation group A /FL=gb:NM_000380.1 NM_000380 xeroderma pigmentosum, complementation group A XPA 7507 NM_000380 /// NR_027302 /// XM_006717278 /// XR_428536 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0009411 // response to UV // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005662 // DNA replication factor A complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0045171 // intercellular bridge // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 58.40 56.27 5.74 0.00 0.00 -4.45
210654_at 210654_at AF021233 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF021233.1 /DEF=Homo sapiens TRAIL-R4-B (TRAIL-R4) mRNA, complete cds. /FEA=mRNA /GEN=TRAIL-R4 /PROD=TRAIL-R4-B /DB_XREF=gi:3452184 /UG=Hs.129844 tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain /FL=gb:AF023849.1 gb:AF021232.1 gb:AF021233.1 gb:AF029761.1 gb:NM_003840.1 AF021233 tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain TNFRSF10D 8793 NM_003840 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0045569 // TRAIL binding // inferred from electronic annotation -87.42 99.04 -5.74 0.00 0.00 -4.45
201102_s_at 201102_s_at NM_002626 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002626.1 /DEF=Homo sapiens phosphofructokinase, liver (PFKL), mRNA. /FEA=mRNA /GEN=PFKL /PROD=phosphofructokinase, liver /DB_XREF=gi:4505746 /UG=Hs.155455 phosphofructokinase, liver /FL=gb:BC004920.1 gb:X15573.1 gb:NM_002626.1 NM_002626 phosphofructokinase, liver PFKL 5211 NM_001002021 /// NM_002626 /// NR_024108 /// XM_005261135 /// XM_005261136 /// XM_005261137 /// XM_006724011 /// XM_006724012 0005975 // carbohydrate metabolic process // traceable author statement /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006002 // fructose 6-phosphate metabolic process // inferred from mutant phenotype /// 0006006 // glucose metabolic process // traceable author statement /// 0006096 // glycolytic process // inferred from direct assay /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005945 // 6-phosphofructokinase complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from direct assay /// 0003872 // 6-phosphofructokinase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from electronic annotation /// 0070061 // fructose binding // inferred from direct assay /// 0070095 // fructose-6-phosphate binding // inferred from direct assay -65.75 169.45 -5.73 0.00 0.00 -4.45
221203_s_at 221203_s_at NM_018023 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018023.2 /DEF=Homo sapiens hypothetical protein FLJ10201 (FLJ10201), mRNA. /FEA=mRNA /GEN=FLJ10201 /PROD=hypothetical protein FLJ10201 /DB_XREF=gi:13492976 /UG=Hs.318127 hypothetical protein FLJ10201 /FL=gb:NM_018023.2 NM_018023 YEATS domain containing 2 YEATS2 55689 NM_018023 /// XM_005247597 /// XM_005247598 /// XM_006713688 /// XR_427369 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006325 // chromatin organization // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay /// 0072686 // mitotic spindle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0017025 // TBP-class protein binding // inferred from physical interaction -65.00 143.43 -5.73 0.00 0.00 -4.45
201175_at 201175_at NM_015959 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015959.1 /DEF=Homo sapiens CGI-31 protein (LOC51075), mRNA. /FEA=mRNA /GEN=LOC51075 /PROD=CGI-31 protein /DB_XREF=gi:7705725 /UG=Hs.279861 CGI-31 protein /FL=gb:AF059753.1 gb:BC000666.1 gb:AF132965.1 gb:NM_015959.1 NM_015959 thioredoxin-related transmembrane protein 2 TMX2 51075 NM_001144012 /// NM_015959 /// NR_026593 /// NR_037645 0045454 // cell redox homeostasis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 71.18 266.59 5.73 0.00 0.00 -4.45
203243_s_at 203243_s_at NM_006457 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006457.1 /DEF=Homo sapiens LIM protein (similar to rat protein kinase C-binding enigma) (LIM), mRNA. /FEA=mRNA /GEN=LIM /PROD=LIM protein (similar to rat protein kinaseC-binding enigma) /DB_XREF=gi:5453713 /UG=Hs.154103 LIM protein (similar to rat protein kinase C-binding enigma) /FL=gb:AF061258.1 gb:NM_006457.1 NM_006457 PDZ and LIM domain 5 PDLIM5 10611 NM_001011513 /// NM_001011515 /// NM_001011516 /// NM_001256425 /// NM_001256426 /// NM_001256427 /// NM_001256428 /// NM_001256429 /// NM_006457 /// NR_046186 /// XM_005262693 /// XM_005262695 /// XM_005262696 /// XM_005262698 /// XM_006714066 /// XM_006714067 /// XM_006714068 /// XM_006714069 /// XM_006714070 0051963 // regulation of synapse assembly // inferred from sequence or structural similarity /// 0061001 // regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation 241.65 598.62 5.73 0.00 0.00 -4.45
200737_at 200737_at NM_000291 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000291.1 /DEF=Homo sapiens phosphoglycerate kinase 1 (PGK1), mRNA. /FEA=mRNA /GEN=PGK1 /PROD=phosphoglycerate kinase 1 /DB_XREF=gi:4505762 /UG=Hs.78771 phosphoglycerate kinase 1 /FL=gb:NM_000291.1 NM_000291 phosphoglycerate kinase 1 PGK1 5230 NM_000291 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004618 // phosphoglycerate kinase activity // not recorded /// 0004618 // phosphoglycerate kinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -93.20 412.90 -5.72 0.00 0.00 -4.45
213571_s_at 213571_s_at BF516289 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF516289 /FEA=EST /DB_XREF=gi:11601468 /DB_XREF=est:UI-H-BW1-anz-d-07-0-UI.s1 /CLONE=IMAGE:3083964 /UG=Hs.19122 eukaryotic translation initiation factor 4E-like 3 BF516289 eukaryotic translation initiation factor 4E family member 2 EIF4E2 9470 NM_001276336 /// NM_001276337 /// NM_001282958 /// NM_004846 /// XM_005246975 /// XR_427124 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005845 // mRNA cap binding complex // inferred from direct assay 0000339 // RNA cap binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 65.95 216.93 5.72 0.00 0.00 -4.45
202902_s_at 202902_s_at NM_004079 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004079.1 /DEF=Homo sapiens cathepsin S (CTSS), mRNA. /FEA=mRNA /GEN=CTSS /PROD=cathepsin S /DB_XREF=gi:4758097 /UG=Hs.181301 cathepsin S /FL=gb:BC002642.1 gb:M86553.1 gb:NM_004079.1 gb:M90696.1 NM_004079 cathepsin S CTSS 1520 NM_001199739 /// NM_004079 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002250 // adaptive immune response // inferred from expression pattern /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0006955 // immune response // traceable author statement /// 0019882 // antigen processing and presentation // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // inferred from direct assay /// 0034769 // basement membrane disassembly // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from direct assay /// 0097067 // cellular response to thyroid hormone stimulus // inferred from expression pattern 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0036021 // endolysosome lumen // traceable author statement /// 0043202 // lysosomal lumen // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0001968 // fibronectin binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0005518 // collagen binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043236 // laminin binding // inferred from direct assay /// 0043394 // proteoglycan binding // inferred from physical interaction -91.03 86.11 -5.72 0.00 0.00 -4.45
221654_s_at 221654_s_at AF077040 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF077040.1 /DEF=Homo sapiens SIH003 mRNA, complete cds. /FEA=mRNA /PROD=SIH003 /DB_XREF=gi:4689127 /UG=Hs.251636 ubiquitin specific protease 3 /FL=gb:AF077040.1 AF077040 ubiquitin specific peptidase 3 USP3 9960 NM_001256702 /// NM_006537 /// NR_046341 /// NR_046342 /// XM_005254816 /// XM_006720789 /// XM_006720790 /// XM_006720791 /// XM_006720792 0000278 // mitotic cell cycle // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016578 // histone deubiquitination // inferred from direct assay /// 0031647 // regulation of protein stability // inferred from direct assay 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004843 // ubiquitin-specific protease activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0042393 // histone binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -84.70 212.97 -5.72 0.00 0.00 -4.45
209633_at 209633_at AL389975 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL389975.1 /DEF=Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2004632. /FEA=mRNA /PROD=protein phosphatase 2A 72 kDa regulatorysubunit /DB_XREF=gi:9367827 /UG=Hs.28219 protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 72), alpha isoform and (PR 130), beta isoform /FL=gb:L07590.1 AL389975 protein phosphatase 2, regulatory subunit B'', alpha PPP2R3A 5523 NM_001190447 /// NM_002718 /// NM_181897 /// XM_006713686 0001754 // eye photoreceptor cell differentiation // inferred from genetic interaction /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0007525 // somatic muscle development // inferred from genetic interaction /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // traceable author statement /// 0061053 // somite development // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from genetic interaction /// 0090244 // Wnt signaling pathway involved in somitogenesis // inferred by curator /// 0090249 // regulation of cell motility involved in somitogenic axis elongation // inferred from genetic interaction /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from direct assay 0000159 // protein phosphatase type 2A complex // inferred from direct assay /// 0000159 // protein phosphatase type 2A complex // inferred from sequence or structural similarity 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 61.15 88.58 5.72 0.00 0.00 -4.45
202690_s_at 202690_s_at BC001721 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001721.1 /DEF=Homo sapiens, small nuclear ribonucleoprotein D1 polypeptide (16kD), clone MGC:2222, mRNA, complete cds. /FEA=mRNA /PROD=small nuclear ribonucleoprotein D1 polypeptide(16kD) /DB_XREF=gi:12804598 /UG=Hs.86948 small nuclear ribonucleoprotein D1 polypeptide (16kD) /FL=gb:BC001721.1 gb:J03798.1 gb:NM_006938.1 BC001721 small nuclear ribonucleoprotein D1 polypeptide 16kDa SNRPD1 6632 NM_001291916 /// NM_006938 0000245 // spliceosomal complex assembly // traceable author statement /// 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005685 // U1 snRNP // inferred from direct assay /// 0005687 // U4 snRNP // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0034709 // methylosome // inferred from direct assay /// 0034715 // pICln-Sm protein complex // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 141.50 354.32 5.72 0.00 0.00 -4.45
202934_at 202934_at AI761561 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI761561 /FEA=EST /DB_XREF=gi:5177228 /DB_XREF=est:wi61h11.x1 /CLONE=IMAGE:2394789 /UG=Hs.198427 hexokinase 2 /FL=gb:NM_000189.1 gb:AF148513.1 AI761561 hexokinase 2 HK2 3099 NM_000189 /// XM_005264280 0001678 // cellular glucose homeostasis // not recorded /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006096 // glycolytic process // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from direct assay /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019318 // hexose metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046324 // regulation of glucose import // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation /// 0051156 // glucose 6-phosphate metabolic process // not recorded /// 0055085 // transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004340 // glucokinase activity // not recorded /// 0004396 // hexokinase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from electronic annotation /// 0008865 // fructokinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019158 // mannokinase activity // not recorded -157.52 190.51 -5.72 0.00 0.00 -4.45
213357_at 213357_at AV701318 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV701318 /FEA=EST /DB_XREF=gi:10717648 /DB_XREF=est:AV701318 /CLONE=ADAAGD10 /UG=Hs.278626 ArgAbl-interacting protein ArgBP2 AV701318 general transcription factor IIH, polypeptide 5 GTF2H5 404672 NM_207118 0006281 // DNA repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation 0000439 // core TFIIH complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 55.38 183.51 5.71 0.00 0.00 -4.45
204168_at 204168_at NM_002413 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002413.1 /DEF=Homo sapiens microsomal glutathione S-transferase 2 (MGST2), mRNA. /FEA=mRNA /GEN=MGST2 /PROD=microsomal glutathione S-transferase 2 /DB_XREF=gi:4505180 /UG=Hs.81874 microsomal glutathione S-transferase 2 /FL=gb:U77604.1 gb:NM_002413.1 NM_002413 microsomal glutathione S-transferase 2 MGST2 4258 NM_001204366 /// NM_001204367 /// NM_001204368 /// NM_002413 /// XM_006714221 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // not recorded /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 1901687 // glutathione derivative biosynthetic process // traceable author statement 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004464 // leukotriene-C4 synthase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // not recorded /// 0008047 // enzyme activator activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 110.67 192.99 5.71 0.00 0.00 -4.45
64418_at 64418_at AI472320 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI472320:tj87c02.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2148482 /clone_end=3' /gb=AI472320 /gi=4334410 /ug=Hs.48504 /len=548 AI472320 synergin, gamma SYNRG 11276 NM_001163544 /// NM_001163545 /// NM_001163546 /// NM_001163547 /// NM_007247 /// NM_080550 /// NM_198882 /// XM_005256980 /// XM_005256981 /// XM_005256982 /// XM_005256983 /// XM_005256985 /// XM_005256986 /// XM_005256988 /// XM_006721652 /// XM_006721653 /// XM_006721654 /// XM_006721655 /// XM_006725301 /// XM_006725302 /// XM_006725303 /// XM_006725304 /// XM_006725305 /// XM_006725306 /// XM_006725307 /// XM_006725308 /// XM_006725309 /// XM_006725310 /// XM_006725311 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030121 // AP-1 adaptor complex // traceable author statement 0005509 // calcium ion binding // inferred from electronic annotation 50.03 63.39 5.70 0.00 0.00 -4.45
221526_x_at 221526_x_at AW452651 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW452651 /FEA=EST /DB_XREF=gi:6993427 /DB_XREF=est:UI-H-BI3-alu-g-02-0-UI.s1 /CLONE=IMAGE:3068738 /UG=Hs.72249 three-PDZ containing protein similar to C. elegans PAR3 (partitioning defect) /FL=gb:AF196185.1 AW452651 par-3 family cell polarity regulator PARD3 56288 NM_001184785 /// NM_001184786 /// NM_001184787 /// NM_001184788 /// NM_001184789 /// NM_001184790 /// NM_001184791 /// NM_001184792 /// NM_001184793 /// NM_001184794 /// NM_019619 /// XM_005252528 /// XM_005252530 /// XM_005252531 /// XM_005252532 /// XM_005252534 /// XM_005252535 /// XM_005252536 /// XM_006717471 /// XM_006717472 /// XM_006717473 /// XM_006717474 /// XM_006717475 /// XM_006717476 /// XM_006717477 /// XM_006717478 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0003383 // apical constriction // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0006612 // protein targeting to membrane // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007205 // protein kinase C-activating G-protein coupled receptor signaling pathway // traceable author statement /// 0007409 // axonogenesis // traceable author statement /// 0008356 // asymmetric cell division // traceable author statement /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // inferred from sequence or structural similarity /// 0022011 // myelination in peripheral nervous system // inferred from sequence or structural similarity /// 0031643 // positive regulation of myelination // inferred from sequence or structural similarity /// 0032970 // regulation of actin filament-based process // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0044319 // wound healing, spreading of cells // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051642 // centrosome localization // inferred from electronic annotation /// 0060341 // regulation of cellular localization // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from sequence or structural similarity /// 0070830 // tight junction assembly // traceable author statement /// 0090162 // establishment of epithelial cell polarity // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005938 // cell cortex // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030054 // cell junction // traceable author statement /// 0033269 // internode region of axon // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0044295 // axonal growth cone // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from sequence or structural similarity /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from sequence or structural similarity /// 0008289 // lipid binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from sequence or structural similarity -61.22 92.74 -5.70 0.00 0.00 -4.45
201092_at 201092_at NM_002893 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002893.2 /DEF=Homo sapiens retinoblastoma-binding protein 7 (RBBP7), mRNA. /FEA=mRNA /GEN=RBBP7 /PROD=retinoblastoma-binding protein 7 /DB_XREF=gi:13259504 /UG=Hs.31314 retinoblastoma-binding protein 7 /FL=gb:U35143.1 gb:NM_002893.2 NM_002893 retinoblastoma binding protein 7 RBBP7 5931 NM_001198719 /// NM_002893 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0070370 // cellular heat acclimation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016581 // NuRD complex // inferred from direct assay /// 0035098 // ESC/E(Z) complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 96.97 450.49 5.70 0.00 0.00 -4.45
211730_s_at 211730_s_at BC005903 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005903.1 /DEF=Homo sapiens, polymerase (RNA) II (DNA directed) polypeptide L (7.6kD), clone MGC:14494, mRNA, complete cds. /FEA=mRNA /PROD=polymerase (RNA) II (DNA directed) polypeptide L(7.6kD) /DB_XREF=gi:13543491 /FL=gb:BC005903.1 BC005903 polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa POLR2L 5441 NM_021128 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006356 // regulation of transcription from RNA polymerase I promoter // traceable author statement /// 0006360 // transcription from RNA polymerase I promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006385 // transcription elongation from RNA polymerase III promoter // traceable author statement /// 0006386 // termination of RNA polymerase III transcription // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005666 // DNA-directed RNA polymerase III complex // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // not recorded /// 0005829 // cytosol // traceable author statement 0001054 // RNA polymerase I activity // not recorded /// 0001055 // RNA polymerase II activity // not recorded /// 0001056 // RNA polymerase III activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // traceable author statement /// 0008270 // zinc ion binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 339.57 893.29 5.70 0.00 0.00 -4.45
212115_at 212115_at AK023154 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023154.1 /DEF=Homo sapiens cDNA FLJ13092 fis, clone NT2RP3002147. /FEA=mRNA /DB_XREF=gi:10434948 /UG=Hs.172035 hypothetical protein similar to mouse HN1 (Hematological and Neurological expressed sequence 1) AK023154 hematological and neurological expressed 1-like HN1L 90861 NM_144570 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 136.35 226.43 5.69 0.00 0.00 -4.45
201846_s_at 201846_s_at NM_012234 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012234.1 /DEF=Homo sapiens RING1 and YY1 binding protein (RYBP), mRNA. /FEA=mRNA /GEN=RYBP /PROD=RING1 and YY1 binding protein /DB_XREF=gi:6912639 /UG=Hs.7910 RING1 and YY1 binding protein /FL=gb:AF179286.1 gb:AB029551.1 gb:NM_012234.1 NM_012234 RING1 and YY1 binding protein RYBP 23429 NM_012234 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0035518 // histone H2A monoubiquitination // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -85.28 140.51 -5.69 0.00 0.00 -4.45
208804_s_at 208804_s_at AL031681 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031681 /DEF=Human DNA sequence from clone 862K6 on chromosome 20q12-13.13. Contains the gene for a protein similar to Drosophila lethal (3) malignant brain tumor (l(3)mbt) protein, the SFRS6 gene for arginineserine-rich splicing factor 6 (SRP55), a 4E-BP2 (4... /FEA=mRNA_3 /DB_XREF=gi:10198606 /UG=Hs.6891 splicing factor, arginineserine-rich 6 /FL=gb:U30828.1 AL031681 serine/arginine-rich splicing factor 6 SRSF6 6431 NM_006275 /// NR_034009 0000380 // alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006376 // mRNA splice site selection // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010837 // regulation of keratinocyte proliferation // inferred from mutant phenotype /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0045617 // negative regulation of keratinocyte differentiation // inferred from mutant phenotype /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from direct assay /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0061041 // regulation of wound healing // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 225.92 296.44 5.68 0.00 0.00 -4.45
208581_x_at 208581_x_at NM_005952 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005952.1 /DEF=Homo sapiens metallothionein 1X (MT1X), mRNA. /FEA=CDS /GEN=MT1X /PROD=metallothionein 1X /DB_XREF=gi:10835231 /UG=Hs.278462 metallothionein 1X /FL=gb:NM_005952.1 NM_005952 metallothionein 1X MT1X 4501 NM_005952 0010038 // response to metal ion // traceable author statement /// 0036018 // cellular response to erythropoietin // inferred from expression pattern /// 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // traceable author statement -2129.38 3716.66 -5.68 0.00 0.00 -4.45
217806_s_at 217806_s_at NM_015584 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015584.1 /DEF=Homo sapiens DKFZP586F1524 protein (DKFZP586F1524), mRNA. /FEA=mRNA /GEN=DKFZP586F1524 /PROD=DKFZP586F1524 protein /DB_XREF=gi:7661671 /UG=Hs.241543 DKFZP586F1524 protein /FL=gb:BC000655.1 gb:AF077203.1 gb:NM_015584.1 NM_015584 polymerase (DNA-directed), delta interacting protein 2 POLDIP2 26073 NM_001290145 /// NM_015584 0070584 // mitochondrion morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation 144.35 226.70 5.68 0.00 0.00 -4.45
211942_x_at 211942_x_at BF979419 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF979419 /FEA=EST /DB_XREF=gi:12346634 /DB_XREF=est:602288246F1 /CLONE=IMAGE:4373914 /UG=Hs.119122 ribosomal protein L13a BF979419 ribosomal protein L13a /// ribosomal protein L13a pseudogene 5 /// ribosomal protein L13a pseudogene 6 /// small nucleolar RNA, C/D box 32A /// small nucleolar RNA, C/D box 33 /// small nucleolar RNA, C/D box 34 /// small nucleolar RNA, C/D box 35A RPL13A /// RPL13AP5 /// RPL13AP6 /// SNORD32A /// SNORD33 /// SNORD34 /// SNORD35A 23521 /// 26816 /// 26817 /// 26818 /// 26819 /// 644511 /// 728658 NM_001270491 /// NM_012423 /// NR_000018 /// NR_000019 /// NR_000020 /// NR_000021 /// NR_026712 /// NR_026715 /// NR_073024 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071346 // cellular response to interferon-gamma // inferred from direct assay /// 1901194 // negative regulation of formation of translation preinitiation complex // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -591.40 2390.57 -5.68 0.00 0.00 -4.45
217301_x_at 217301_x_at X71810 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X71810.1 /DEF=H.sapiens IEF 9306 mRNA. /FEA=mRNA /GEN=9306 /PROD=IEF SSP 9306 /DB_XREF=gi:297905 /UG=Hs.16003 retinoblastoma-binding protein 4 X71810 retinoblastoma binding protein 4 RBBP4 5928 NM_001135255 /// NM_001135256 /// NM_005610 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006260 // DNA replication // inferred from electronic annotation /// 0006334 // nucleosome assembly // traceable author statement /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031497 // chromatin assembly // inferred from direct assay /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0051726 // regulation of cell cycle // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016580 // Sin3 complex // non-traceable author statement /// 0016581 // NuRD complex // inferred from direct assay /// 0016581 // NuRD complex // non-traceable author statement /// 0016589 // NURF complex // inferred from direct assay /// 0033186 // CAF-1 complex // inferred from direct assay /// 0035098 // ESC/E(Z) complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042393 // histone binding // non-traceable author statement /// 0042826 // histone deacetylase binding // inferred from physical interaction 153.70 299.88 5.67 0.00 0.00 -4.45
219582_at 219582_at NM_024576 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024576.1 /DEF=Homo sapiens hypothetical protein FLJ21079 (FLJ21079), mRNA. /FEA=mRNA /GEN=FLJ21079 /PROD=hypothetical protein FLJ21079 /DB_XREF=gi:13375751 /UG=Hs.16512 hypothetical protein FLJ21079 /FL=gb:NM_024576.1 NM_024576 opioid growth factor receptor-like 1 OGFRL1 79627 NM_024576 /// XM_005248765 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation -101.45 104.35 -5.67 0.00 0.00 -4.45
205990_s_at 205990_s_at NM_003392 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003392.1 /DEF=Homo sapiens wingless-type MMTV integration site family, member 5A (WNT5A), mRNA. /FEA=mRNA /GEN=WNT5A /PROD=wingless-type MMTV integration site family,member 5A /DB_XREF=gi:4507928 /UG=Hs.152213 wingless-type MMTV integration site family, member 5A /FL=gb:L20861.1 gb:NM_003392.1 NM_003392 wingless-type MMTV integration site family, member 5A WNT5A 7474 NM_001256105 /// NM_003392 /// XM_006713324 0000187 // activation of MAPK activity // inferred from direct assay /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001736 // establishment of planar polarity // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from expression pattern /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001947 // heart looping // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // inferred from sequence or structural similarity /// 0002741 // positive regulation of cytokine secretion involved in immune response // inferred from mutant phenotype /// 0003323 // type B pancreatic cell development // inferred from electronic annotation /// 0003344 // pericardium morphogenesis // inferred from electronic annotation /// 0003401 // axis elongation // inferred from electronic annotation /// 0003408 // optic cup formation involved in camera-type eye development // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007223 // Wnt signaling pathway, calcium modulating pathway // inferred from direct assay /// 0007223 // Wnt signaling pathway, calcium modulating pathway // inferred from mutant phenotype /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from direct assay /// 0007257 // activation of JUN kinase activity // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0007442 // hindgut morphogenesis // inferred from electronic annotation /// 0007494 // midgut development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from expression pattern /// 0008595 // anterior/posterior axis specification, embryo // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010820 // positive regulation of T cell chemotaxis // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from sequence or structural similarity /// 0016055 // Wnt signaling pathway // inferred from direct assay /// 0016477 // cell migration // inferred from electronic annotation /// 0021891 // olfactory bulb interneuron development // inferred from sequence or structural similarity /// 0021915 // neural tube development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from sequence or structural similarity /// 0030216 // keratinocyte differentiation // inferred from expression pattern /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030825 // positive regulation of cGMP metabolic process // inferred from direct assay /// 0032148 // activation of protein kinase B activity // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0034613 // cellular protein localization // inferred from direct assay /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0036342 // post-anal tail morphogenesis // inferred from electronic annotation /// 0038031 // non-canonical Wnt signaling pathway via JNK cascade // inferred from electronic annotation /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0042060 // wound healing // inferred from direct assay /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0043032 // positive regulation of macrophage activation // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from mutant phenotype /// 0045165 // cell fate commitment // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from mutant phenotype /// 0045732 // positive regulation of protein catabolic process // inferred from genetic interaction /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045778 // positive regulation of ossification // inferred from mutant phenotype /// 0045836 // positive regulation of meiosis // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046546 // development of primary male sexual characteristics // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0048546 // digestive tract morphogenesis // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // inferred from mutant phenotype /// 0048806 // genitalia development // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048850 // hypophysis morphogenesis // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051216 // cartilage development // inferred from electronic annotation /// 0051964 // negative regulation of synapse assembly // inferred from electronic annotation /// 0060021 // palate development // inferred from mutant phenotype /// 0060026 // convergent extension // inferred from electronic annotation /// 0060029 // convergent extension involved in organogenesis // inferred from electronic annotation /// 0060065 // uterus development // inferred from electronic annotation /// 0060067 // cervix development // inferred from electronic annotation /// 0060068 // vagina development // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation /// 0060071 // Wnt signaling pathway, planar cell polarity pathway // inferred from electronic annotation /// 0060157 // urinary bladder development // inferred from electronic annotation /// 0060324 // face development // inferred from mutant phenotype /// 0060340 // positive regulation of type I interferon-mediated signaling pathway // inferred from direct assay /// 0060599 // lateral sprouting involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060606 // tube closure // inferred from electronic annotation /// 0060638 // mesenchymal-epithelial cell signaling // inferred from electronic annotation /// 0060686 // negative regulation of prostatic bud formation // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // inferred from electronic annotation /// 0060760 // positive regulation of response to cytokine stimulus // inferred from direct assay /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060907 // positive regulation of macrophage cytokine production // inferred from mutant phenotype /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0061347 // planar cell polarity pathway involved in outflow tract morphogenesis // inferred from electronic annotation /// 0061348 // planar cell polarity pathway involved in ventricular septum morphogenesis // inferred from electronic annotation /// 0061349 // planar cell polarity pathway involved in cardiac right atrium morphogenesis // inferred from electronic annotation /// 0061350 // planar cell polarity pathway involved in cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0061354 // planar cell polarity pathway involved in pericardium morphogenesis // inferred from electronic annotation /// 0070245 // positive regulation of thymocyte apoptotic process // inferred from electronic annotation /// 0071219 // cellular response to molecule of bacterial origin // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071277 // cellular response to calcium ion // inferred from expression pattern /// 0071300 // cellular response to retinoic acid // inferred from sequence or structural similarity /// 0071346 // cellular response to interferon-gamma // inferred from expression pattern /// 0071425 // hematopoietic stem cell proliferation // inferred from direct assay /// 0071542 // dopaminergic neuron differentiation // inferred from electronic annotation /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from expression pattern /// 0072201 // negative regulation of mesenchymal cell proliferation // inferred from direct assay /// 0090009 // primitive streak formation // inferred from electronic annotation /// 0090037 // positive regulation of protein kinase C signaling // inferred from mutant phenotype /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from genetic interaction /// 0090103 // cochlea morphogenesis // inferred from electronic annotation /// 0090179 // planar cell polarity pathway involved in neural tube closure // inferred from electronic annotation /// 2000049 // positive regulation of cell-cell adhesion mediated by cadherin // inferred from electronic annotation /// 2000484 // positive regulation of interleukin-8 secretion // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // traceable author statement 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005102 // receptor binding // inferred from electronic annotation /// 0005109 // frizzled binding // inferred from physical interaction /// 0005110 // frizzled-2 binding // inferred from electronic annotation /// 0005115 // receptor tyrosine kinase-like orphan receptor binding // inferred from physical interaction /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0048018 // receptor agonist activity // inferred by curator -48.57 42.09 -5.66 0.00 0.00 -4.45
204214_s_at 204214_s_at NM_006834 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006834.1 /DEF=Homo sapiens RAB32, member RAS oncogene family (RAB32), mRNA. /FEA=mRNA /GEN=RAB32 /PROD=RAB32, member RAS oncogene family /DB_XREF=gi:5803132 /UG=Hs.32217 RAB32, member RAS oncogene family /FL=gb:U71127.1 gb:NM_006834.1 NM_006834 RAB32, member RAS oncogene family RAB32 10981 NM_006834 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from mutant phenotype /// 0032438 // melanosome organization // inferred from mutant phenotype /// 0035646 // endosome to melanosome transport // inferred from mutant phenotype /// 0090382 // phagosome maturation // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031905 // early endosome lumen // inferred from direct assay /// 0042470 // melanosome // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // non-traceable author statement /// 0030742 // GTP-dependent protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0035612 // AP-2 adaptor complex binding // inferred from direct assay /// 0035650 // AP-1 adaptor complex binding // inferred from physical interaction /// 0035651 // AP-3 adaptor complex binding // inferred from physical interaction -98.32 345.41 -5.66 0.00 0.00 -4.45
221486_at 221486_at AF067170 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF067170.1 /DEF=Homo sapiens alpha endosulfine mRNA, complete cds. /FEA=mRNA /PROD=alpha endosulfine /DB_XREF=gi:4894373 /UG=Hs.111680 endosulfine alpha /FL=gb:AF067170.1 gb:AF157510.1 AF067170 endosulfine alpha ENSA 2029 NM_004436 /// NM_207042 /// NM_207043 /// NM_207044 /// NM_207045 /// NM_207046 /// NM_207047 /// NM_207168 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000278 // mitotic cell cycle // traceable author statement /// 0006810 // transport // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from sequence or structural similarity /// 0007584 // response to nutrient // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // inferred from sequence or structural similarity /// 0050796 // regulation of insulin secretion // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0008200 // ion channel inhibitor activity // traceable author statement /// 0008601 // protein phosphatase type 2A regulator activity // inferred from sequence or structural similarity /// 0019212 // phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0019870 // potassium channel inhibitor activity // inferred from direct assay /// 0051721 // protein phosphatase 2A binding // inferred from sequence or structural similarity 75.80 149.50 5.66 0.00 0.00 -4.45
212312_at 212312_at AL117381 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL117381 /DEF=Human DNA sequence from clone RP5-857M17 on chromosome 20 Contains ESTs, STSs, GSSs and CpG islands. Contains the 3 part of the ID1 gene for inhibitor of DNA binding 1 (dominant negative helix-loop-helix protein), a gene for a novel protein simil... /FEA=mRNA_1 /DB_XREF=gi:11493211 /UG=Hs.305890 BCL2-like 1 AL117381 BCL2-like 1 BCL2L1 598 NM_001191 /// NM_138578 /// XM_005260481 /// XM_005260482 /// XM_005260483 /// XM_005260484 /// XM_005260485 /// XM_005260486 /// XM_005260487 /// XM_006723843 /// XM_006723844 /// XM_006723845 0000910 // cytokinesis // inferred from mutant phenotype /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from direct assay /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007093 // mitotic cell cycle checkpoint // inferred from mutant phenotype /// 0007281 // germ cell development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // traceable author statement /// 0009314 // response to radiation // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0010507 // negative regulation of autophagy // traceable author statement /// 0019050 // suppression by virus of host apoptotic process // inferred from direct assay /// 0034097 // response to cytokine // inferred from direct assay /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0040007 // growth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0046898 // response to cycloheximide // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from direct assay /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from direct assay /// 0060154 // cellular process regulating host cell cycle in response to virus // inferred from electronic annotation /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// 0071312 // cellular response to alkaloid // inferred from electronic annotation /// 0071480 // cellular response to gamma radiation // inferred from electronic annotation /// 0071839 // apoptotic process in bone marrow // inferred from electronic annotation /// 0090005 // negative regulation of establishment of protein localization to plasma membrane // inferred from direct assay /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred by curator /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // not recorded /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 0097284 // hepatocyte apoptotic process // inferred from electronic annotation /// 1900118 // negative regulation of execution phase of apoptosis // inferred from direct assay /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from direct assay /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from direct assay /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // non-traceable author statement /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0097136 // Bcl-2 family protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051434 // BH3 domain binding // inferred from physical interaction 119.90 161.43 5.66 0.00 0.00 -4.45
203575_at 203575_at NM_001896 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001896.1 /DEF=Homo sapiens casein kinase 2, alpha prime polypeptide (CSNK2A2), mRNA. /FEA=mRNA /GEN=CSNK2A2 /PROD=casein kinase 2, alpha prime polypeptide /DB_XREF=gi:4503096 /UG=Hs.82201 casein kinase 2, alpha prime polypeptide /FL=gb:M55268.1 gb:NM_001896.1 NM_001896 casein kinase 2, alpha prime polypeptide CSNK2A2 1459 NM_001896 /// XM_005255799 /// XM_005255800 /// XM_005255801 0000278 // mitotic cell cycle // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0071174 // mitotic spindle checkpoint // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031519 // PcG protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction -100.85 168.82 -5.66 0.00 0.00 -4.45
201431_s_at 201431_s_at NM_001387 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001387.1 /DEF=Homo sapiens dihydropyrimidinase-like 3 (DPYSL3), mRNA. /FEA=mRNA /GEN=DPYSL3 /PROD=dihydropyrimidinase-like 3 /DB_XREF=gi:4503378 /UG=Hs.74566 dihydropyrimidinase-like 3 /FL=gb:D78014.1 gb:NM_001387.1 NM_001387 dihydropyrimidinase-like 3 DPYSL3 1809 NM_001197294 /// NM_001387 0006208 // pyrimidine nucleobase catabolic process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from sequence or structural similarity /// 0010977 // negative regulation of neuron projection development // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from sequence or structural similarity /// 0051017 // actin filament bundle assembly // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051491 // positive regulation of filopodium assembly // inferred from sequence or structural similarity /// 0051764 // actin crosslink formation // inferred from sequence or structural similarity /// 0071345 // cellular response to cytokine stimulus // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0031941 // filamentous actin // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation /// 0044297 // cell body // inferred from sequence or structural similarity /// 0070382 // exocytic vesicle // inferred from sequence or structural similarity 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016812 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from sequence or structural similarity /// 0035374 // chondroitin sulfate binding // inferred from sequence or structural similarity /// 0051219 // phosphoprotein binding // inferred from electronic annotation 154.85 349.40 5.66 0.00 0.00 -4.45
205353_s_at 205353_s_at NM_002567 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002567.1 /DEF=Homo sapiens prostatic binding protein (PBP), mRNA. /FEA=mRNA /GEN=PBP /PROD=prostatic binding protein /DB_XREF=gi:4505620 /UG=Hs.80423 prostatic binding protein /FL=gb:D16111.1 gb:NM_002567.1 NM_002567 phosphatidylethanolamine binding protein 1 PEBP1 5037 NM_002567 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008429 // phosphatidylethanolamine binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 87.53 215.51 5.66 0.00 0.00 -4.45
219774_at 219774_at NM_019044 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019044.1 /DEF=Homo sapiens hypothetical protein (FLJ10996), mRNA. /FEA=mRNA /GEN=FLJ10996 /PROD=hypothetical protein /DB_XREF=gi:9506632 /UG=Hs.98324 hypothetical protein /FL=gb:NM_019044.1 NM_019044 coiled-coil domain containing 93 CCDC93 54520 NM_019044 /// XM_006712597 /// XM_006712598 /// XM_006712599 /// XM_006712600 -54.52 65.34 -5.66 0.00 0.00 -4.45
221962_s_at 221962_s_at AI829920 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI829920 /FEA=EST /DB_XREF=gi:5450591 /DB_XREF=est:wj47d11.x1 /CLONE=IMAGE:2405973 /UG=Hs.28505 ubiquitin-conjugating enzyme E2H (homologous to yeast UBC8) AI829920 ubiquitin-conjugating enzyme E2H UBE2H 7328 NM_001202498 /// NM_003344 /// NM_182697 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -94.22 220.99 -5.66 0.00 0.00 -4.45
220547_s_at 220547_s_at NM_019054 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019054.1 /DEF=Homo sapiens hypothetical protein MGC5560 (MGC5560), mRNA. /FEA=mRNA /GEN=MGC5560 /PROD=hypothetical protein MGC5560 /DB_XREF=gi:12963480 /UG=Hs.233150 hypothetical protein MGC5560 /FL=gb:NM_019054.1 NM_019054 family with sequence similarity 35, member A FAM35A 54537 NM_019054 /// XM_005269920 /// XM_006717902 /// XM_006717903 /// XM_006717904 /// XM_006717905 /// XM_006717906 103.65 217.85 5.66 0.00 0.00 -4.45
212899_at 212899_at AB028951 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB028951.1 /DEF=Homo sapiens mRNA for KIAA1028 protein, partial cds. /FEA=mRNA /GEN=KIAA1028 /PROD=KIAA1028 protein /DB_XREF=gi:5689392 /UG=Hs.129836 KIAA1028 protein AB028951 cyclin-dependent kinase 19 CDK19 23097 NM_015076 /// XM_005266870 /// XM_005266871 /// XM_005266872 /// XM_005266873 /// XM_006715402 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -52.25 87.12 -5.65 0.00 0.00 -4.45
214113_s_at 214113_s_at AI738479 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI738479 /FEA=EST /DB_XREF=gi:5100460 /DB_XREF=est:wi32d06.x1 /CLONE=IMAGE:2391947 /UG=Hs.65648 RNA binding motif protein 8A AI738479 RNA binding motif protein 8A RBM8A 9939 NM_005105 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003729 // mRNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 51.87 97.91 5.64 0.00 0.00 -4.45
220419_s_at 220419_s_at NM_013396 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013396.1 /DEF=Homo sapiens ubiquitin specific protease 25 (USP25), mRNA. /FEA=mRNA /GEN=USP25 /PROD=ubiquitin specific protease 25 /DB_XREF=gi:7019564 /UG=Hs.186961 ubiquitin specific protease 25 /FL=gb:AF134213.1 gb:NM_013396.1 NM_013396 ubiquitin specific peptidase 25 USP25 29761 NM_001283041 /// NM_001283042 /// NM_013396 /// XM_005260949 /// XM_006723992 /// XR_430349 0006464 // cellular protein modification process // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // inferred from mutant phenotype /// 0071108 // protein K48-linked deubiquitination // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // traceable author statement /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032183 // SUMO binding // inferred from direct assay /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation -69.85 250.07 -5.63 0.00 0.00 -4.45
201053_s_at 201053_s_at NM_006814 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006814.1 /DEF=Homo sapiens proteasome (prosome, macropain) inhibitor subunit 1 (PI31) (PSMF1), mRNA. /FEA=mRNA /GEN=PSMF1 /PROD=proteasome inhibitor /DB_XREF=gi:5803122 /UG=Hs.75925 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) /FL=gb:D88378.1 gb:NM_006814.1 NM_006814 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) PSMF1 9491 NM_006814 /// NM_178578 /// NM_178579 /// XM_005260873 /// XM_005260874 /// XM_006723664 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010951 // negative regulation of endopeptidase activity // non-traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 1901799 // negative regulation of proteasomal protein catabolic process // inferred from direct assay 0000502 // proteasome complex // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // non-traceable author statement /// 0016020 // membrane // inferred from direct assay 0004866 // endopeptidase inhibitor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0070628 // proteasome binding // inferred from direct assay 50.87 71.39 5.63 0.00 0.00 -4.45
213065_at 213065_at AB011118 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011118.1 /DEF=Homo sapiens mRNA for KIAA0546 protein, partial cds. /FEA=mRNA /GEN=KIAA0546 /PROD=KIAA0546 protein /DB_XREF=gi:3043615 /UG=Hs.26764 KIAA0546 protein AB011118 zinc finger, C3H1-type containing ZFC3H1 196441 NM_144982 0006396 // RNA processing // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 68.10 100.95 5.63 0.00 0.00 -4.45
202577_s_at 202577_s_at BC005162 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005162.1 /DEF=Homo sapiens, hypothetical protein FLJ11126, clone MGC:4651, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein FLJ11126 /DB_XREF=gi:13477370 /UG=Hs.226396 hypothetical protein FLJ11126 /FL=gb:BC005162.1 gb:NM_018332.1 BC005162 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A DDX19A 55308 NM_018332 /// XM_005256030 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 52.45 91.22 5.63 0.00 0.00 -4.45
209224_s_at 209224_s_at BC003674 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003674.1 /DEF=Homo sapiens, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 (8kD, B8), clone MGC:12315, mRNA, complete cds. /FEA=mRNA /PROD=NADH dehydrogenase (ubiquinone) 1 alphasubcomplex, 2 (8kD, B8) /DB_XREF=gi:13277539 /UG=Hs.163867 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 (8kD, B8) /FL=gb:BC003674.1 gb:AF047185.1 gb:NM_002488.1 gb:AF077029.1 BC003674 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa NDUFA2 4695 NM_001185012 /// NM_002488 /// NR_033697 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 75.82 225.01 5.62 0.00 0.00 -4.45
201751_at 201751_at NM_014876 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014876.1 /DEF=Homo sapiens KIAA0063 gene product (KIAA0063), mRNA. /FEA=mRNA /GEN=KIAA0063 /PROD=KIAA0063 gene product /DB_XREF=gi:7661887 /UG=Hs.3094 KIAA0063 gene product /FL=gb:D31884.1 gb:NM_014876.1 NM_014876 Josephin domain containing 1 JOSD1 9929 NM_014876 /// XM_005261876 /// XM_005261877 /// XM_005261878 /// XM_005261879 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 56.07 170.86 5.62 0.00 0.00 -4.45
212385_at 212385_at AU118026 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU118026 /FEA=EST /DB_XREF=gi:10933043 /DB_XREF=est:AU118026 /CLONE=HEMBA1002729 /UG=Hs.289068 Homo sapiens cDNA FLJ11918 fis, clone HEMBB1000272 AU118026 transcription factor 4 TCF4 6925 NM_001083962 /// NM_001243226 /// NM_001243227 /// NM_001243228 /// NM_001243230 /// NM_001243231 /// NM_001243232 /// NM_001243233 /// NM_001243234 /// NM_001243235 /// NM_001243236 /// NM_003199 /// XM_005266739 /// XM_005266741 /// XM_005266743 /// XM_005266744 /// XM_005266745 /// XM_005266746 /// XM_005266747 /// XM_005266749 /// XM_005266750 /// XM_005266752 /// XM_005266754 /// XM_005266755 /// XM_005266761 /// XM_006722529 /// XM_006722530 /// XM_006722531 /// XM_006722532 /// XM_006722533 /// XM_006722534 /// XM_006722535 /// XM_006722536 /// XM_006722537 /// XM_006722538 /// XM_006722539 /// XM_006722540 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0065004 // protein-DNA complex assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001011 // sequence-specific DNA binding RNA polymerase recruiting transcription factor activity // inferred from sequence or structural similarity /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from sequence or structural similarity /// 0001087 // TFIIB-class binding transcription factor activity // inferred from sequence or structural similarity /// 0001093 // TFIIB-class transcription factor binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity -109.32 296.56 -5.61 0.00 0.00 -4.45
205194_at 205194_at NM_004577 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004577.1 /DEF=Homo sapiens phosphoserine phosphatase (PSPH), mRNA. /FEA=mRNA /GEN=PSPH /PROD=phosphoserine phosphatase /DB_XREF=gi:4758971 /UG=Hs.56407 phosphoserine phosphatase /FL=gb:NM_004577.1 NM_004577 phosphoserine phosphatase PSPH 5723 NM_004577 /// XM_005271773 /// XM_005271774 /// XM_005271775 /// XM_005271776 /// XM_005271777 /// XM_006715760 /// XM_006715761 0006563 // L-serine metabolic process // inferred from direct assay /// 0006564 // L-serine biosynthetic process // not recorded /// 0006564 // L-serine biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from direct assay /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // traceable author statement /// 0043005 // neuron projection // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from direct assay /// 0004647 // phosphoserine phosphatase activity // inferred from direct assay /// 0004647 // phosphoserine phosphatase activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0008253 // 5'-nucleotidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -54.65 62.73 -5.61 0.00 0.00 -4.45
203414_at 203414_at NM_012329 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012329.1 /DEF=Homo sapiens monocyte to macrophage differentiation-associated (MMD), mRNA. /FEA=mRNA /GEN=MMD /PROD=monocyte to macrophagedifferentiation-associated, precursor /DB_XREF=gi:6912507 /UG=Hs.79889 monocyte to macrophage differentiation-associated /FL=gb:NM_012329.1 NM_012329 monocyte to macrophage differentiation-associated MMD 23531 NM_012329 /// XM_006721795 /// XR_429880 0019835 // cytolysis // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement -107.78 190.89 -5.61 0.00 0.00 -4.45
215440_s_at 215440_s_at AL523320 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523320 /FEA=EST /DB_XREF=gi:12786813 /DB_XREF=est:AL523320 /CLONE=CS0DC001YD02 (5 prime) /UG=Hs.184736 hypothetical protein FLJ10097 AL523320 brain expressed, X-linked 4 BEX4 56271 NM_001080425 /// NM_001127688 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 54.45 92.58 5.60 0.00 0.00 -4.45
220610_s_at 220610_s_at NM_006309 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006309.1 /DEF=Homo sapiens leucine rich repeat (in FLII) interacting protein 2 (LRRFIP2), mRNA. /FEA=mRNA /GEN=LRRFIP2 /PROD=leucine rich repeat (in FLII) interactingprotein 2 /DB_XREF=gi:5453725 /UG=Hs.57672 leucine rich repeat (in FLII) interacting protein 2 /FL=gb:AF115509.1 gb:NM_006309.1 NM_006309 leucine rich repeat (in FLII) interacting protein 2 LRRFIP2 9209 NM_001134369 /// NM_001282691 /// NM_006309 /// NM_017724 /// XM_005265538 /// XM_005265539 /// XM_005265540 /// XM_005265550 /// XM_005265551 /// XM_005265553 /// XM_005265554 /// XM_005265555 /// XM_005265556 /// XM_005265557 /// XM_006713385 /// XM_006713386 /// XM_006713387 /// XM_006713388 /// XM_006713389 /// XM_006713390 /// XM_006713391 /// XM_006713392 /// XM_006713393 /// XM_006713394 /// XM_006713395 /// XM_006713396 /// XM_006713397 /// XM_006713398 /// XM_006713399 /// XM_006713400 /// XM_006713401 /// XM_006713402 /// XM_006713403 /// XM_006713404 0016055 // Wnt signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030275 // LRR domain binding // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation -53.82 77.81 -5.60 0.00 0.00 -4.45
210627_s_at 210627_s_at BC002804 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002804.1 /DEF=Homo sapiens, Similar to glucosidase I, clone MGC:3544, mRNA, complete cds. /FEA=mRNA /PROD=Similar to glucosidase I /DB_XREF=gi:12803914 /UG=Hs.83919 glucosidase I /FL=gb:BC002804.1 BC002804 mannosyl-oligosaccharide glucosidase MOGS 7841 NM_001146158 /// NM_006302 0006457 // protein folding // traceable author statement /// 0006487 // protein N-linked glycosylation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009311 // oligosaccharide metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004573 // mannosyl-oligosaccharide glucosidase activity // inferred from electronic annotation /// 0015926 // glucosidase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 63.85 69.75 5.60 0.00 0.00 -4.45
212795_at 212795_at AL137753 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL137753.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434K1412 (from clone DKFZp434K1412). /FEA=mRNA /DB_XREF=gi:6808455 /UG=Hs.12144 KIAA1033 protein AL137753 KIAA1033 KIAA1033 23325 NM_001293640 /// NM_015275 /// XM_005268742 /// XM_005268743 /// XM_005268744 /// XM_005268745 /// XM_005268746 /// XR_245916 0016197 // endosomal transport // inferred from mutant phenotype /// 0016197 // endosomal transport // inferred from sequence or structural similarity 0005768 // endosome // inferred from direct assay /// 0071203 // WASH complex // inferred from direct assay 77.02 182.41 5.60 0.00 0.00 -4.45
218519_at 218519_at NM_017945 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017945.1 /DEF=Homo sapiens hypothetical protein FLJ20730 (FLJ20730), mRNA. /FEA=mRNA /GEN=FLJ20730 /PROD=hypothetical protein FLJ20730 /DB_XREF=gi:8923656 /UG=Hs.237480 hypothetical protein FLJ20730 /FL=gb:BC005207.1 gb:NM_017945.1 NM_017945 solute carrier family 35, member A5 SLC35A5 55032 NM_017945 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015780 // nucleotide-sugar transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 1901679 // nucleotide transmembrane transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:proton symporter activity // inferred from electronic annotation 56.15 66.78 5.60 0.00 0.00 -4.45
213567_at 213567_at BF431965 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF431965 /FEA=EST /DB_XREF=gi:11444079 /DB_XREF=est:nab83d09.x1 /CLONE=IMAGE:3274409 /UG=Hs.153106 Homo sapiens clone 23728 mRNA sequence BF431965 karyopherin alpha 4 (importin alpha 3) KPNA4 3840 NM_002268 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation 52.28 77.99 5.60 0.00 0.00 -4.45
204009_s_at 204009_s_at W80678 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W80678 /FEA=EST /DB_XREF=gi:1391858 /DB_XREF=est:zd90d06.s1 /CLONE=IMAGE:356747 /UG=Hs.184050 v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog /FL=gb:M54968.1 gb:NM_004985.1 W80678 Kirsten rat sarcoma viral oncogene homolog KRAS 3845 NM_004985 /// NM_033360 /// XM_006719069 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007569 // cell aging // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008542 // visual learning // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0035022 // positive regulation of Rac protein signal transduction // inferred from electronic annotation /// 0035176 // social behavior // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051385 // response to mineralocorticoid // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019002 // GMP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0030275 // LRR domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 151.05 215.77 5.60 0.00 0.00 -4.45
210214_s_at 210214_s_at U25110 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U25110.1 /DEF=Human bone morphogenic protein type II receptor mRNA, complete cds. /FEA=mRNA /PROD=bone morphogenic protein type II receptor /DB_XREF=gi:882390 /UG=Hs.53250 bone morphogenetic protein receptor, type II (serinethreonine kinase) /FL=gb:U25110.1 U25110 bone morphogenetic protein receptor, type II (serine/threonine kinase) BMPR2 659 NM_001204 /// NM_033346 0001707 // mesoderm formation // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001946 // lymphangiogenesis // inferred from sequence or structural similarity /// 0001974 // blood vessel remodeling // inferred from sequence or structural similarity /// 0002063 // chondrocyte development // inferred from mutant phenotype /// 0003085 // negative regulation of systemic arterial blood pressure // inferred from mutant phenotype /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from expression pattern /// 0009952 // anterior/posterior pattern specification // inferred from sequence or structural similarity /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0014916 // regulation of lung blood pressure // inferred from mutant phenotype /// 0014916 // regulation of lung blood pressure // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030501 // positive regulation of bone mineralization // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0030509 // BMP signaling pathway // traceable author statement /// 0030513 // positive regulation of BMP signaling pathway // inferred from mutant phenotype /// 0032924 // activin receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045906 // negative regulation of vasoconstriction // inferred from sequence or structural similarity /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048286 // lung alveolus development // inferred from sequence or structural similarity /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060836 // lymphatic endothelial cell differentiation // inferred from sequence or structural similarity /// 0060840 // artery development // inferred from sequence or structural similarity /// 0060841 // venous blood vessel development // inferred from sequence or structural similarity /// 0061298 // retina vasculature development in camera-type eye // inferred from sequence or structural similarity /// 1902731 // negative regulation of chondrocyte proliferation // inferred from mutant phenotype /// 2000279 // negative regulation of DNA biosynthetic process // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from mutant phenotype /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044214 // fully spanning plasma membrane // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016362 // activin receptor activity, type II // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -127.72 184.41 -5.59 0.00 0.00 -4.45
202544_at 202544_at NM_004124 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004124.1 /DEF=Homo sapiens glia maturation factor, beta (GMFB), mRNA. /FEA=mRNA /GEN=GMFB /PROD=glia maturation factor, beta /DB_XREF=gi:4758441 /UG=Hs.151413 glia maturation factor, beta /FL=gb:BC005359.1 gb:M86492.1 gb:AB001106.1 gb:NM_004124.1 NM_004124 glia maturation factor, beta GMFB 2764 NM_004124 /// XM_005267541 /// XM_006720118 0006468 // protein phosphorylation // traceable author statement /// 0006469 // negative regulation of protein kinase activity // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0043085 // positive regulation of catalytic activity // traceable author statement 0005622 // intracellular // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // traceable author statement /// 0004871 // signal transducer activity // traceable author statement /// 0008047 // enzyme activator activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 112.43 317.59 5.59 0.00 0.00 -4.45
209161_at 209161_at AI184802 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI184802 /FEA=EST /DB_XREF=gi:3735440 /DB_XREF=est:qd24g04.x1 /CLONE=IMAGE:1724694 /UG=Hs.8551 PRP4STKWD splicing factor /FL=gb:AF016369.1 gb:U82756.1 gb:NM_004697.1 AI184802 pre-mRNA processing factor 4 PRPF4 9128 NM_001244926 /// NM_004697 /// XM_005252300 0000375 // RNA splicing, via transesterification reactions // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred by curator /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0071001 // U4/U6 snRNP // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 68.23 96.64 5.59 0.00 0.00 -4.45
218460_at 218460_at NM_017802 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017802.1 /DEF=Homo sapiens hypothetical protein FLJ20397 (FLJ20397), mRNA. /FEA=mRNA /GEN=FLJ20397 /PROD=hypothetical protein FLJ20397 /DB_XREF=gi:8923371 /UG=Hs.272688 hypothetical protein FLJ20397 /FL=gb:NM_017802.1 NM_017802 HEAT repeat containing 2 HEATR2 54919 NM_017802 /// NR_075098 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 84.32 248.89 5.59 0.00 0.00 -4.45
217922_at 217922_at AL157902 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL157902 /DEF=Human DNA sequence from clone RP4-675C20 on chromosome 1p13.2. Contains the 3 end of the MAN1A2 gene for mannosidase alpha 1A2, a pseudogene similar to predicted fly, worm and yeast genes, ESTs, STSs and GSSs /FEA=mRNA /DB_XREF=gi:9581579 /UG=Hs.239114 mannosidase, alpha, class 1A, member 2 /FL=gb:AF027156.1 gb:NM_006699.1 AL157902 mannosidase, alpha, class 1A, member 2 MAN1A2 10905 NM_006699 /// XM_006710302 0006486 // protein glycosylation // inferred from electronic annotation /// 0006491 // N-glycan processing // traceable author statement /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009100 // glycoprotein metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048286 // lung alveolus development // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 170.72 206.46 5.59 0.00 0.00 -4.45
202894_at 202894_at NM_004444 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004444.1 /DEF=Homo sapiens EphB4 (EPHB4) mRNA. /FEA=mRNA /GEN=HTK /PROD=EphB4 /DB_XREF=gi:4758289 /UG=Hs.155227 EphB4 /FL=gb:NM_004444.1 gb:U07695.1 NM_004444 EPH receptor B4 EPHB4 2050 NM_004444 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from direct assay /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0005003 // ephrin receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -114.37 252.86 -5.59 0.00 0.00 -4.45
202154_x_at 202154_x_at NM_006086 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006086.1 /DEF=Homo sapiens tubulin, beta, 4 (TUBB4), mRNA. /FEA=mRNA /GEN=TUBB4 /PROD=tubulin, beta, 4 /DB_XREF=gi:5174736 /UG=Hs.159154 tubulin, beta, 4 /FL=gb:BC000748.1 gb:U47634.1 gb:NM_006086.1 NM_006086 tubulin, beta 3 class III TUBB3 10381 NM_001197181 /// NM_006086 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // inferred from mutant phenotype /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 312.40 686.70 5.58 0.00 0.00 -4.45
219459_at 219459_at NM_018082 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018082.1 /DEF=Homo sapiens hypothetical protein FLJ10388 (FLJ10388), mRNA. /FEA=mRNA /GEN=FLJ10388 /PROD=hypothetical protein FLJ10388 /DB_XREF=gi:8922398 /UG=Hs.197642 hypothetical protein FLJ10388 /FL=gb:NM_018082.1 NM_018082 polymerase (RNA) III (DNA directed) polypeptide B POLR3B 55703 NM_001160708 /// NM_018082 /// XM_006719498 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006385 // transcription elongation from RNA polymerase III promoter // traceable author statement /// 0006386 // termination of RNA polymerase III transcription // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032728 // positive regulation of interferon-beta production // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045089 // positive regulation of innate immune response // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005666 // DNA-directed RNA polymerase III complex // not recorded /// 0005666 // DNA-directed RNA polymerase III complex // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0001056 // RNA polymerase III activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0032549 // ribonucleoside binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 49.35 107.58 5.58 0.00 0.00 -4.45
203272_s_at 203272_s_at BF308548 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF308548 /FEA=EST /DB_XREF=gi:11255776 /DB_XREF=est:601890403F1 /CLONE=IMAGE:4131457 /UG=Hs.8186 lung cancer candidate /FL=gb:AF055479.1 gb:NM_007275.1 BF308548 tumor suppressor candidate 2 TUSC2 11334 NM_007275 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007267 // cell-cell signaling // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0032618 // interleukin-15 production // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0071609 // chemokine (C-C motif) ligand 5 production // inferred from electronic annotation /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 66.15 124.50 5.58 0.00 0.00 -4.45
211951_at 211951_at D21262 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D21262.1 /DEF=Human mRNA for KIAA0035 gene, partial cds. /FEA=mRNA /GEN=KIAA0035 /PROD=ORF /DB_XREF=gi:434764 /UG=Hs.75337 nucleolar phosphoprotein p130 D21262 nucleolar and coiled-body phosphoprotein 1 NOLC1 9221 NM_001284388 /// NM_001284389 /// NM_004741 /// XM_005270273 0006364 // rRNA processing // traceable author statement /// 0007000 // nucleolus organization // inferred from electronic annotation /// 0007049 // cell cycle // traceable author statement /// 0007067 // mitotic nuclear division // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 123.33 220.39 5.58 0.00 0.00 -4.45
201468_s_at 201468_s_at NM_000903 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000903.1 /DEF=Homo sapiens diaphorase (NADHNADPH) (cytochrome b-5 reductase) (DIA4), mRNA. /FEA=mRNA /GEN=DIA4 /PROD=NAD(P)H menadione oxidoreductase 1,dioxin-inducible /DB_XREF=gi:4505414 /UG=Hs.80706 diaphorase (NADHNADPH) (cytochrome b-5 reductase) /FL=gb:J03934.1 gb:NM_000903.1 NM_000903 NAD(P)H dehydrogenase, quinone 1 NQO1 1728 NM_000903 /// NM_001025433 /// NM_001025434 /// NM_001286137 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006809 // nitric oxide biosynthetic process // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0009636 // response to toxic substance // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003955 // NAD(P)H dehydrogenase (quinone) activity // inferred from electronic annotation /// 0004128 // cytochrome-b5 reductase activity, acting on NAD(P)H // traceable author statement /// 0004784 // superoxide dismutase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 73.23 356.74 5.57 0.00 0.00 -4.45
209568_s_at 209568_s_at AF186779 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF186779.1 /DEF=Homo sapiens RGL protein (RGL) mRNA, complete cds. /FEA=mRNA /GEN=RGL /PROD=RGL protein /DB_XREF=gi:7682470 /UG=Hs.79219 RalGDS-like gene; KIAA0959 protein /FL=gb:AF186779.1 AF186779 ral guanine nucleotide dissociation stimulator-like 1 RGL1 23179 NM_015149 /// XM_005245010 /// XM_005245011 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // non-traceable author statement /// 0032315 // regulation of Ral GTPase activity // non-traceable author statement /// 0032852 // positive regulation of Ral GTPase activity // non-traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0008321 // Ral guanyl-nucleotide exchange factor activity // non-traceable author statement 247.40 396.62 5.57 0.00 0.00 -4.45
220052_s_at 220052_s_at NM_012461 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012461.1 /DEF=Homo sapiens TERF1 (TRF1)-interacting nuclear factor 2 (TINF2), mRNA. /FEA=mRNA /GEN=TINF2 /PROD=TERF1 (TRF1)-interacting nuclear factor 2 /DB_XREF=gi:6912715 /UG=Hs.7797 TERF1 (TRF1)-interacting nuclear factor 2 /FL=gb:AF195512.1 gb:NM_012461.1 NM_012461 TERF1 (TRF1)-interacting nuclear factor 2 TINF2 26277 NM_001099274 /// NM_012461 /// XM_005267528 /// XM_005267529 0000723 // telomere maintenance // traceable author statement /// 0010833 // telomere maintenance via telomere lengthening // inferred from mutant phenotype /// 0010836 // negative regulation of protein ADP-ribosylation // inferred from genetic interaction /// 0032202 // telomere assembly // inferred from mutant phenotype /// 0032205 // negative regulation of telomere maintenance // inferred from electronic annotation /// 0032206 // positive regulation of telomere maintenance // inferred from mutant phenotype /// 0032211 // negative regulation of telomere maintenance via telomerase // inferred by curator /// 0032211 // negative regulation of telomere maintenance via telomerase // inferred from genetic interaction /// 0034502 // protein localization to chromosome // inferred by curator /// 0034502 // protein localization to chromosome // inferred from mutant phenotype /// 0050680 // negative regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0070198 // protein localization to chromosome, telomeric region // inferred from mutant phenotype 0000781 // chromosome, telomeric region // inferred from direct assay /// 0000783 // nuclear telomere cap complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0010370 // perinucleolar chromocenter // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042162 // telomeric DNA binding // inferred from direct assay 52.20 46.15 5.57 0.00 0.00 -4.45
212234_at 212234_at AL034550 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL034550 /DEF=Human DNA sequence from clone RP5-1184F4 on chromosome 20q11.1-11.23. Contains the 3 end of gene KIAA0978, two genes for novel proteins similar to nucleolar protein 4 (NOL4) (NOLP), and one or two novel genes. Contains ESTs, STSs, GSSs and three ... /FEA=mRNA_4 /DB_XREF=gi:9187334 /UG=Hs.3686 KIAA0978 protein AL034550 additional sex combs like transcriptional regulator 1 ASXL1 171023 NM_001164603 /// NM_015338 /// XM_006723727 /// XM_006723728 /// XM_006723729 /// XM_006723730 /// XM_006723731 /// XM_006723732 /// XM_006723733 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from sequence or structural similarity /// 0035359 // negative regulation of peroxisome proliferator activated receptor signaling pathway // inferred from sequence or structural similarity /// 0035522 // monoubiquitinated histone H2A deubiquitination // inferred from direct assay /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048386 // positive regulation of retinoic acid receptor signaling pathway // inferred from sequence or structural similarity /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // inferred from sequence or structural similarity /// 0060348 // bone development // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0035517 // PR-DUB complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0042974 // retinoic acid receptor binding // inferred from sequence or structural similarity /// 0042975 // peroxisome proliferator activated receptor binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 52.53 81.14 5.57 0.00 0.00 -4.45
202883_s_at 202883_s_at T79584 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:T79584 /FEA=EST /DB_XREF=gi:698093 /DB_XREF=est:yd71a11.s1 /CLONE=IMAGE:113660 /UG=Hs.108705 protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform /FL=gb:NM_002716.1 gb:AF163473.1 gb:M65254.1 gb:AF087438.1 T79584 protein phosphatase 2, regulatory subunit A, beta PPP2R1B 5519 NM_001177562 /// NM_001177563 /// NM_002716 /// NM_181699 /// NM_181700 /// XM_006718867 /// XM_006718868 /// XM_006718869 /// XM_006718870 /// XM_006718871 /// XM_006718872 0060561 // apoptotic process involved in morphogenesis // inferred from mutant phenotype /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype 0045121 // membrane raft // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 58.35 141.72 5.57 0.00 0.00 -4.45
201231_s_at 201231_s_at NM_001428 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001428.1 /DEF=Homo sapiens enolase 1, (alpha) (ENO1), mRNA. /FEA=mRNA /GEN=ENO1 /PROD=enolase 1, (alpha) /DB_XREF=gi:4503570 /UG=Hs.254105 enolase 1, (alpha) /FL=gb:BC001810.1 gb:BC004458.1 gb:M14328.1 gb:NM_001428.1 NM_001428 enolase 1, (alpha) ENO1 2023 NM_001201483 /// NM_001428 /// XM_006710433 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0009615 // response to virus // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0000015 // phosphopyruvate hydratase complex // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031305 // integral component of mitochondrial inner membrane // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0004634 // phosphopyruvate hydratase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016829 // lyase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -617.35 1934.30 -5.56 0.00 0.00 -4.45
205963_s_at 205963_s_at NM_005147 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005147.1 /DEF=Homo sapiens tumorous imaginal discs (Drosophila) homolog (TID1), mRNA. /FEA=mRNA /GEN=TID1 /PROD=tumorous imaginal discs (Drosophila) homolog /DB_XREF=gi:4827025 /UG=Hs.311057 DnaJ (Hsp40) homolog, subfamily A, member 3 /FL=gb:AF061749.1 gb:NM_005147.1 NM_005147 DnaJ (Hsp40) homolog, subfamily A, member 3 DNAJA3 9093 NM_001135110 /// NM_001286516 /// NM_005147 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006264 // mitochondrial DNA replication // inferred from electronic annotation /// 0006457 // protein folding // inferred from direct assay /// 0006457 // protein folding // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007528 // neuromuscular junction development // inferred from direct assay /// 0007569 // cell aging // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009408 // response to heat // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay /// 0060336 // negative regulation of interferon-gamma-mediated signaling pathway // inferred from direct assay /// 0071340 // skeletal muscle acetylcholine-gated channel clustering // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // inferred from mutant phenotype /// 0005884 // actin filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008385 // IkappaB kinase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019897 // extrinsic component of plasma membrane // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from sequence or structural similarity /// 0033256 // I-kappaB/NF-kappaB complex // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from sequence or structural similarity 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005133 // interferon-gamma receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from electronic annotation 63.83 156.56 5.56 0.00 0.00 -4.45
201008_s_at 201008_s_at AA812232 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA812232 /FEA=EST /DB_XREF=gi:2881843 /DB_XREF=est:ob84h09.s1 /CLONE=IMAGE:1338113 /UG=Hs.179526 upregulated by 1,25-dihydroxyvitamin D-3 /FL=gb:NM_006472.1 gb:S73591.1 AA812232 thioredoxin interacting protein TXNIP 10628 NM_006472 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051782 // negative regulation of cell division // inferred from direct assay /// 0071228 // cellular response to tumor cell // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -132.22 97.54 -5.55 0.00 0.00 -4.45
203607_at 203607_at NM_014937 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014937.1 /DEF=Homo sapiens KIAA0966 protein (KIAA0966), mRNA. /FEA=mRNA /GEN=KIAA0966 /PROD=KIAA0966 protein /DB_XREF=gi:7662413 /UG=Hs.52463 KIAA0966 protein /FL=gb:AF113227.1 gb:AB023183.1 gb:NM_014937.1 NM_014937 inositol polyphosphate-5-phosphatase F INPP5F 22876 NM_001243194 /// NM_001243195 /// NM_014937 /// XM_006717719 /// XM_006717720 0008152 // metabolic process // inferred from electronic annotation /// 0014898 // cardiac muscle hypertrophy in response to stress // inferred from electronic annotation /// 0031161 // phosphatidylinositol catabolic process // inferred from electronic annotation /// 0048015 // phosphatidylinositol-mediated signaling // inferred from electronic annotation /// 0051896 // regulation of protein kinase B signaling // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0042578 // phosphoric ester hydrolase activity // inferred from electronic annotation 71.38 105.79 5.55 0.00 0.00 -4.45
202850_at 202850_at NM_002858 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002858.2 /DEF=Homo sapiens ATP-binding cassette, sub-family D (ALD), member 3 (ABCD3), mRNA. /FEA=mRNA /GEN=ABCD3 /PROD=ATP-binding cassette, sub-family D, member 3 /DB_XREF=gi:10947125 /UG=Hs.76781 ATP-binding cassette, sub-family D (ALD), member 3 /FL=gb:NM_002858.2 gb:M81182.1 NM_002858 ATP-binding cassette, sub-family D (ALD), member 3 ABCD3 5825 NM_001122674 /// NM_002858 /// XM_005271088 /// XM_005271089 /// XM_006710802 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from genetic interaction /// 0006810 // transport // inferred from electronic annotation /// 0007031 // peroxisome organization // inferred from direct assay /// 0007031 // peroxisome organization // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0042760 // very long-chain fatty acid catabolic process // inferred from genetic interaction /// 0055085 // transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // traceable author statement /// 0005782 // peroxisomal matrix // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 90.65 135.75 5.55 0.00 0.00 -4.45
212485_at 212485_at AU146596 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU146596 /FEA=EST /DB_XREF=gi:11008117 /DB_XREF=est:AU146596 /CLONE=HEMBB1000938 /UG=Hs.105749 KIAA0553 protein AU146596 G patch domain containing 8 GPATCH8 23131 NM_001002909 /// NR_036474 /// XM_006721781 /// XM_006721782 /// XM_006721783 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 47.55 101.12 5.54 0.00 0.00 -4.45
218067_s_at 218067_s_at NM_018011 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018011.1 /DEF=Homo sapiens hypothetical protein FLJ10154 (FLJ10154), mRNA. /FEA=mRNA /GEN=FLJ10154 /PROD=hypothetical protein FLJ10154 /DB_XREF=gi:8922258 /UG=Hs.179972 hypothetical protein FLJ10154 /FL=gb:NM_018011.1 NM_018011 arginine and glutamate rich 1 ARGLU1 55082 NM_018011 /// XR_243043 /// XR_429268 /// XR_429269 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 158.22 180.41 5.54 0.00 0.00 -4.45
218351_at 218351_at NM_017845 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017845.1 /DEF=Homo sapiens hypothetical protein FLJ20502 (FLJ20502), mRNA. /FEA=mRNA /GEN=FLJ20502 /PROD=hypothetical protein FLJ20502 /DB_XREF=gi:8923457 /UG=Hs.23956 hypothetical protein FLJ20502 /FL=gb:AF182421.1 gb:NM_017845.1 NM_017845 COMM domain containing 8 COMMD8 54951 NM_017845 /// XM_006714019 0005515 // protein binding // inferred from physical interaction 123.07 350.24 5.53 0.00 0.00 -4.45
212397_at 212397_at AL137751 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL137751.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434I0812 (from clone DKFZp434I0812); partial cds. /FEA=mRNA /GEN=DKFZp434I0812 /PROD=hypothetical protein /DB_XREF=gi:6808387 /UG=Hs.263671 Homo sapiens mRNA; cDNA DKFZp434I0812 (from clone DKFZp434I0812); partial cds AL137751 radixin RDX 5962 NM_001260492 /// NM_001260493 /// NM_001260494 /// NM_001260495 /// NM_001260496 /// NM_002906 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from genetic interaction /// 0030033 // microvillus assembly // inferred from electronic annotation /// 0045176 // apical protein localization // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation /// 0061028 // establishment of endothelial barrier // inferred from genetic interaction 0001726 // ruffle // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030315 // T-tubule // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0032420 // stereocilium // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0051286 // cell tip // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -238.95 693.73 -5.53 0.00 0.00 -4.45
218290_at 218290_at NM_018049 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018049.1 /DEF=Homo sapiens hypothetical protein FLJ10297 (FLJ10297), mRNA. /FEA=mRNA /GEN=FLJ10297 /PROD=hypothetical protein FLJ10297 /DB_XREF=gi:8922332 /UG=Hs.173739 hypothetical protein FLJ10297 /FL=gb:BC003084.1 gb:NM_018049.1 NM_018049 microRNA 6789 /// pleckstrin homology domain containing, family J member 1 MIR6789 /// PLEKHJ1 55111 /// 102466736 NM_018049 /// NR_106847 /// XM_005259591 /// XM_006722784 0005543 // phospholipid binding // inferred from electronic annotation 58.48 89.41 5.53 0.00 0.00 -4.45
218263_s_at 218263_s_at NM_021211 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021211.1 /DEF=Homo sapiens transposon-derived Buster1 transposase-like protein (LOC58486), mRNA. /FEA=mRNA /GEN=LOC58486 /PROD=transposon-derived Buster1 transposase-likeprotein /DB_XREF=gi:10864022 /UG=Hs.25726 transposon-derived Buster1 transposase-like protein /FL=gb:NM_021211.1 gb:AF205600.1 NM_021211 zinc finger, BED-type containing 5 ZBED5 58486 NM_001143667 /// NM_021211 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 67.73 100.39 5.53 0.00 0.00 -4.45
215706_x_at 215706_x_at BC002323 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC002323.1 /DEF=Homo sapiens, Similar to thyroid hormone receptor interactor 6, clone IMAGE:3504464, mRNA, partial cds. /FEA=mRNA /PROD=Similar to thyroid hormone receptor interactor6 /DB_XREF=gi:12803044 /UG=Hs.75873 zyxin BC002323 zyxin ZYX 7791 NM_001010972 /// NM_003461 /// XM_005250052 /// XM_005250053 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 180.30 683.23 5.52 0.00 0.00 -4.45
212648_at 212648_at AL079292 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL079292.1 /DEF=Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 48814. /FEA=mRNA /PROD=hypothetical protein, similar to (AC007017)putative RNA helicase A Arabidopsis thaliana /DB_XREF=gi:5102732 /UG=Hs.95665 hypothetical protein AL079292 DEAH (Asp-Glu-Ala-His) box polypeptide 29 DHX29 54505 NM_019030 /// XM_005248544 /// XM_006714653 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016282 // eukaryotic 43S preinitiation complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043024 // ribosomal small subunit binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 85.75 117.08 5.52 0.00 0.00 -4.45
216526_x_at 216526_x_at AK024836 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024836.1 /DEF=Homo sapiens cDNA: FLJ21183 fis, clone CAS11634, highly similar to HSHLACW07 Homo sapiens mRNA for human leukocyte antigen C alpha chain. /FEA=mRNA /DB_XREF=gi:10437242 /UG=Hs.277477 major histocompatibility complex, class I, C AK024836 major histocompatibility complex, class I, C HLA-C 3107 NM_001243042 /// NM_002117 0001539 // cilium or flagellum-dependent cell motility // non-traceable author statement /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0006955 // immune response // non-traceable author statement /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005858 // axonemal dynein complex // non-traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032395 // MHC class II receptor activity // non-traceable author statement /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0046977 // TAP binding // inferred from direct assay -397.75 1010.20 -5.52 0.00 0.00 -4.45
200036_s_at 200036_s_at NM_007104 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007104.2 /DEF=Homo sapiens ribosomal protein L10a (RPL10A), mRNA. /FEA=mRNA /GEN=RPL10A /PROD=ribosomal protein L10a /DB_XREF=gi:6325471 /UG=Hs.252574 ribosomal protein L10a /FL=gb:U12404.1 gb:NM_007104.2 NM_007104 ribosomal protein L10a RPL10A 4736 NM_007104 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -380.83 1527.01 -5.52 0.00 0.00 -4.45
212633_at 212633_at AL132776 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL132776 /DEF=Human DNA sequence from clone RP3-393D12 on chromosome 6q16.1-16.3. Contains the 3 end of the gene KIAA0776, the gene for a novel LIM domain protein, ESTs, STSs and GSSs /FEA=mRNA_2 /DB_XREF=gi:6706246 /UG=Hs.5460 KIAA0776 protein AL132776 UFM1-specific ligase 1 UFL1 23376 NM_015323 0001649 // osteoblast differentiation // inferred from direct assay /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0032434 // regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0071569 // protein ufmylation // inferred from direct assay /// 0071569 // protein ufmylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0071568 // UFM1 conjugating enzyme activity // inferred from direct assay 69.10 95.22 5.52 0.00 0.00 -4.45
218812_s_at 218812_s_at NM_025156 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025156.1 /DEF=Homo sapiens hypothetical protein FLJ12474 (FLJ12474), mRNA. /FEA=mRNA /GEN=FLJ12474 /PROD=hypothetical protein FLJ12474 /DB_XREF=gi:13376752 /UG=Hs.289053 hypothetical protein FLJ12474 /FL=gb:NM_025156.1 NM_025156 ORAI calcium release-activated calcium modulator 2 ORAI2 80228 NM_001126340 /// NM_001271818 /// NM_001271819 /// NM_032831 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 74.25 86.67 5.52 0.00 0.00 -4.45
214259_s_at 214259_s_at AI144075 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI144075 /FEA=EST /DB_XREF=gi:3665884 /DB_XREF=est:qi63e12.x1 /CLONE=IMAGE:1861198 /UG=Hs.6980 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) AI144075 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) AKR7A2 8574 NM_003689 0005975 // carbohydrate metabolic process // traceable author statement /// 0006081 // cellular aldehyde metabolic process // traceable author statement /// 0044597 // daunorubicin metabolic process // inferred from mutant phenotype /// 0044598 // doxorubicin metabolic process // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004032 // alditol:NADP+ 1-oxidoreductase activity // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019119 // phenanthrene-9,10-epoxide hydrolase activity // inferred from direct assay 84.82 189.36 5.51 0.00 0.00 -4.45
219202_at 219202_at NM_024599 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024599.1 /DEF=Homo sapiens hypothetical protein FLJ22341 (FLJ22341), mRNA. /FEA=mRNA /GEN=FLJ22341 /PROD=hypothetical protein FLJ22341 /DB_XREF=gi:13375798 /UG=Hs.25485 hypothetical protein FLJ22341 /FL=gb:NM_024599.1 NM_024599 rhomboid 5 homolog 2 (Drosophila) RHBDF2 79651 NM_001005498 /// NM_024599 /// XM_005257669 /// XM_005257670 /// XM_005257672 /// XM_006722079 /// XM_006722080 /// XM_006722081 /// XM_006722082 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0050709 // negative regulation of protein secretion // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation -88.88 125.86 -5.50 0.00 0.00 -4.45
201326_at 201326_at BE737030 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE737030 /FEA=EST /DB_XREF=gi:10151022 /DB_XREF=est:601304610F1 /CLONE=IMAGE:3639098 /UG=Hs.82916 chaperonin containing TCP1, subunit 6A (zeta 1) /FL=gb:M94083.1 gb:NM_001762.1 gb:L27706.1 BE737030 chaperonin containing TCP1, subunit 6A (zeta 1) CCT6A 908 NM_001009186 /// NM_001762 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 102.88 235.44 5.50 0.00 0.00 -4.45
201009_s_at 201009_s_at AI439556 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI439556 /FEA=EST /DB_XREF=gi:4305149 /DB_XREF=est:tc90c12.x1 /CLONE=IMAGE:2073430 /UG=Hs.179526 upregulated by 1,25-dihydroxyvitamin D-3 /FL=gb:NM_006472.1 gb:S73591.1 AI439556 thioredoxin interacting protein TXNIP 10628 NM_006472 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051782 // negative regulation of cell division // inferred from direct assay /// 0071228 // cellular response to tumor cell // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -156.15 167.78 -5.50 0.00 0.00 -4.45
208697_s_at 208697_s_at BC000734 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000734.1 /DEF=Homo sapiens, eukaryotic translation initiation factor 3, subunit 6 (48kD), clone MGC:2060, mRNA, complete cds. /FEA=mRNA /PROD=eukaryotic translation initiation factor 3,subunit 6 (48kD) /DB_XREF=gi:12653884 /UG=Hs.106673 eukaryotic translation initiation factor 3, subunit 6 (48kD) /FL=gb:BC000734.1 gb:U62962.1 gb:U54562.1 gb:U85947.1 gb:U94175.1 gb:NM_001568.1 BC000734 eukaryotic translation initiation factor 3, subunit E EIF3E 3646 NM_001568 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045947 // negative regulation of translational initiation // non-traceable author statement 0000785 // chromatin // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0005852 // eukaryotic translation initiation factor 3 complex // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction -413.20 1611.80 -5.49 0.00 0.00 -4.45
204369_at 204369_at NM_006218 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006218.1 /DEF=Homo sapiens phosphoinositide-3-kinase, catalytic, alpha polypeptide (PIK3CA), mRNA. /FEA=mRNA /GEN=PIK3CA /PROD=phosphoinositide-3-kinase, catalytic, alphapolypeptide /DB_XREF=gi:5453891 /UG=Hs.85701 phosphoinositide-3-kinase, catalytic, alpha polypeptide /FL=gb:U79143.1 gb:NM_006218.1 NM_006218 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha PIK3CA 5290 NM_006218 /// XM_006713658 0001525 // angiogenesis // inferred from electronic annotation /// 0001944 // vasculature development // traceable author statement /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0036092 // phosphatidylinositol-3-phosphate biosynthetic process // inferred from direct assay /// 0036092 // phosphatidylinositol-3-phosphate biosynthetic process // inferred from electronic annotation /// 0038028 // insulin receptor signaling pathway via phosphatidylinositol 3-kinase // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043542 // endothelial cell migration // traceable author statement /// 0044029 // hypomethylation of CpG island // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0046854 // phosphatidylinositol phosphorylation // inferred from sequence or structural similarity /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0060048 // cardiac muscle contraction // traceable author statement /// 2000270 // negative regulation of fibroblast apoptotic process // inferred from electronic annotation /// 2000653 // regulation of genetic imprinting // inferred from electronic annotation /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0005942 // phosphatidylinositol 3-kinase complex // inferred from sequence or structural similarity /// 0005943 // 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // traceable author statement /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0030295 // protein kinase activator activity // inferred from electronic annotation /// 0035004 // phosphatidylinositol 3-kinase activity // inferred from sequence or structural similarity /// 0035004 // phosphatidylinositol 3-kinase activity // traceable author statement /// 0035005 // 1-phosphatidylinositol-4-phosphate 3-kinase activity // not recorded /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // traceable author statement -53.40 89.50 -5.48 0.00 0.00 -4.45
201067_at 201067_at BF215487 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF215487 /FEA=EST /DB_XREF=gi:11109176 /DB_XREF=est:601881048F1 /CLONE=IMAGE:4093691 /UG=Hs.61153 proteasome (prosome, macropain) 26S subunit, ATPase, 2 /FL=gb:BC002589.1 gb:D11094.1 gb:NM_002803.1 BF215487 proteasome (prosome, macropain) 26S subunit, ATPase, 2 PSMC2 5701 NM_001204453 /// NM_002803 /// XM_005250505 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // inferred from direct assay /// 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 58.85 92.33 5.48 0.00 0.00 -4.45
202695_s_at 202695_s_at NM_004760 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004760.1 /DEF=Homo sapiens serinethreonine kinase 17a (apoptosis-inducing) (STK17A), mRNA. /FEA=mRNA /GEN=STK17A /PROD=serinethreonine kinase 17a(apoptosis-inducing) /DB_XREF=gi:4758191 /UG=Hs.9075 serinethreonine kinase 17a (apoptosis-inducing) /FL=gb:AB011420.1 gb:NM_004760.1 NM_004760 serine/threonine kinase 17a STK17A 9263 NM_004760 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 2000271 // positive regulation of fibroblast apoptotic process // inferred from mutant phenotype /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 65.90 119.97 5.48 0.00 0.00 -4.45
204767_s_at 204767_s_at BC000323 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000323.1 /DEF=Homo sapiens, flap structure-specific endonuclease 1, clone MGC:8478, mRNA, complete cds. /FEA=mRNA /PROD=flap structure-specific endonuclease 1 /DB_XREF=gi:12653112 /UG=Hs.4756 flap structure-specific endonuclease 1 /FL=gb:BC000323.1 gb:NM_004111.3 BC000323 flap structure-specific endonuclease 1 FEN1 2237 NM_004111 0000278 // mitotic cell cycle // traceable author statement /// 0000722 // telomere maintenance via recombination // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0000737 // DNA catabolic process, endonucleolytic // inferred from mutant phenotype /// 0000738 // DNA catabolic process, exonucleolytic // traceable author statement /// 0006260 // DNA replication // non-traceable author statement /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006281 // DNA repair // non-traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009650 // UV protection // traceable author statement /// 0032201 // telomere maintenance via semi-conservative replication // traceable author statement /// 0043137 // DNA replication, removal of RNA primer // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // traceable author statement /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from mutant phenotype /// 0003684 // damaged DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // traceable author statement /// 0004523 // RNA-DNA hybrid ribonuclease activity // inferred from direct assay /// 0004527 // exonuclease activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008309 // double-stranded DNA exodeoxyribonuclease activity // traceable author statement /// 0008409 // 5'-3' exonuclease activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0017108 // 5'-flap endonuclease activity // inferred from direct assay /// 0017108 // 5'-flap endonuclease activity // inferred from mutant phenotype /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048256 // flap endonuclease activity // inferred from electronic annotation 109.58 116.59 5.48 0.00 0.00 -4.45
216033_s_at 216033_s_at S74774 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S74774.1 /DEF=p59fyn(T)=OKT3-induced calcium influx regulator human, Jurkat J6 T cell line, mRNA Partial, 1605 nt. /FEA=CDS /PROD=tyrosine kinase p59fyn(T) /DB_XREF=gi:802050 /UG=Hs.169370 FYN oncogene related to SRC, FGR, YES S74774 FYN proto-oncogene, Src family tyrosine kinase FYN 2534 NM_001242779 /// NM_002037 /// NM_153047 /// NM_153048 /// XM_005266887 /// XM_005266888 /// XM_005266889 /// XM_005266890 /// XM_005266892 /// XM_006715429 0001764 // neuron migration // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0006816 // calcium ion transport // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007612 // learning // traceable author statement /// 0007631 // feeding behavior // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0031295 // T cell costimulation // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050798 // activated T cell proliferation // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation /// 1900182 // positive regulation of protein localization to nucleus // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from physical interaction /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004715 // non-membrane spanning protein tyrosine kinase activity // non-traceable author statement /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015631 // tubulin binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042608 // T cell receptor binding // inferred from electronic annotation /// 0042609 // CD4 receptor binding // inferred from electronic annotation /// 0042610 // CD8 receptor binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from physical interaction /// 0051428 // peptide hormone receptor binding // inferred from electronic annotation /// 0070851 // growth factor receptor binding // inferred from physical interaction -73.57 180.21 -5.48 0.00 0.00 -4.45
36711_at 36711_at AL021977 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL021977:bK447C4.1 (novel MAFF (v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein F) LIKE protein) /cds=(0,494) /gb=AL021977 /gi=4914526 /ug=Hs.51305 /len=2128 AL021977 v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F MAFF 23764 NM_001161572 /// NM_001161573 /// NM_001161574 /// NM_012323 /// NM_152878 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0007567 // parturition // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 338.38 839.39 5.47 0.00 0.00 -4.45
212131_at 212131_at BG054966 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG054966 /FEA=EST /DB_XREF=gi:12512220 /DB_XREF=est:nac93b07.x1 /CLONE=IMAGE:3441756 /UG=Hs.8258 DKFZP434D1335 protein BG054966 LSM14A, SCD6 homolog A (S. cerevisiae) LSM14A 26065 NM_001114093 /// NM_015578 /// XM_005258719 /// XM_005258720 /// XM_005258721 /// XM_005276948 /// XM_005276949 /// XM_005276950 0006417 // regulation of translation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0033962 // cytoplasmic mRNA processing body assembly // inferred from direct assay /// 0033962 // cytoplasmic mRNA processing body assembly // inferred from mutant phenotype /// 0039529 // RIG-I signaling pathway // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060340 // positive regulation of type I interferon-mediated signaling pathway // inferred from electronic annotation 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 72.20 192.12 5.47 0.00 0.00 -4.45
200669_s_at 200669_s_at NM_003340 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003340.1 /DEF=Homo sapiens ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC45) (UBE2D3), mRNA. /FEA=mRNA /GEN=UBE2D3 /PROD=ubiquitin-conjugating enzyme E2D 3 (homologousto yeast UBC45) /DB_XREF=gi:4507776 /UG=Hs.118797 ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC45) /FL=gb:U39318.1 gb:BC003395.1 gb:NM_003340.1 NM_003340 ubiquitin-conjugating enzyme E2D 3 UBE2D3 7323 NM_003340 /// NM_181886 /// NM_181887 /// NM_181888 /// NM_181889 /// NM_181890 /// NM_181891 /// NM_181892 /// NM_181893 /// XM_005263200 /// XM_005263205 /// XM_006714297 /// XM_006714298 /// XM_006714299 /// XM_006714300 /// XM_006714301 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000209 // protein polyubiquitination // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0030509 // BMP signaling pathway // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -221.10 647.10 -5.47 0.00 0.00 -4.45
218399_s_at 218399_s_at NM_017955 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017955.1 /DEF=Homo sapiens hypothetical protein FLJ20764 (FLJ20764), mRNA. /FEA=mRNA /GEN=FLJ20764 /PROD=hypothetical protein FLJ20764 /DB_XREF=gi:8923673 /UG=Hs.34045 hypothetical protein FLJ20764 /FL=gb:NM_017955.1 NM_017955 cell division cycle associated 4 CDCA4 55038 NM_017955 /// NM_145701 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 92.20 193.20 5.47 0.00 0.00 -4.45
212264_s_at 212264_s_at BE645850 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE645850 /FEA=EST /DB_XREF=gi:9970161 /DB_XREF=est:7e77c03.x1 /CLONE=IMAGE:3288484 /UG=Hs.154978 KIAA0261 protein BE645850 wings apart-like homolog (Drosophila) WAPAL 23063 NM_015045 /// XM_006717726 /// XM_006717727 /// XM_006717728 /// XM_006717729 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0035562 // negative regulation of chromatin binding // inferred from mutant phenotype /// 0045875 // negative regulation of sister chromatid cohesion // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0071168 // protein localization to chromatin // inferred from mutant phenotype /// 0071922 // regulation of cohesin localization to chromatin // inferred from mutant phenotype 0000775 // chromosome, centromeric region // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0000795 // synaptonemal complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008278 // cohesin complex // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -116.70 187.40 -5.47 0.00 0.00 -4.45
202048_s_at 202048_s_at NM_014292 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014292.1 /DEF=Homo sapiens chromobox homolog 6 (CBX6), mRNA. /FEA=mRNA /GEN=CBX6 /PROD=chromobox homolog 6 /DB_XREF=gi:10140848 /UG=Hs.107374 chromobox homolog 6 /FL=gb:NM_014292.1 NM_014292 chromobox homolog 6 CBX6 23466 NM_014292 /// XM_005261412 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0031519 // PcG protein complex // inferred from direct assay 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 94.25 61.20 5.46 0.00 0.00 -4.45
203404_at 203404_at NM_014782 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014782.1 /DEF=Homo sapiens KIAA0512 gene product (KIAA0512), mRNA. /FEA=mRNA /GEN=KIAA0512 /PROD=KIAA0512 gene product /DB_XREF=gi:7662161 /UG=Hs.48924 KIAA0512 gene product; ALEX2 /FL=gb:AB011084.1 gb:NM_014782.1 NM_014782 armadillo repeat containing, X-linked 2 ARMCX2 9823 NM_001282231 /// NM_014782 /// NM_177949 /// XM_005278109 /// XM_005278110 /// XM_005278111 /// XM_005278113 /// XM_005278114 /// XM_005278115 /// XM_005278116 /// XM_005278117 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 94.43 165.36 5.46 0.00 0.00 -4.45
200937_s_at 200937_s_at NM_000969 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000969.1 /DEF=Homo sapiens ribosomal protein L5 (RPL5), mRNA. /FEA=mRNA /GEN=RPL5 /PROD=ribosomal protein L5 /DB_XREF=gi:4506654 /UG=Hs.180946 ribosomal protein L5 /FL=gb:AF113210.1 gb:NM_000969.1 gb:U14966.1 NM_000969 ribosomal protein L5 /// small nucleolar RNA, C/D box 21 RPL5 /// SNORD21 6083 /// 6125 NM_000969 /// NR_000006 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008097 // 5S rRNA binding // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -381.30 2153.10 -5.46 0.00 0.00 -4.45
218176_at 218176_at NM_022149 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022149.1 /DEF=Homo sapiens MAGEF1 protein (MAGEF1), mRNA. /FEA=mRNA /GEN=MAGEF1 /PROD=MAGEF1 protein /DB_XREF=gi:11545891 /UG=Hs.306123 MAGEF1 protein /FL=gb:AF295378.1 gb:NM_022149.1 NM_022149 melanoma antigen family F, 1 MAGEF1 64110 NM_022149 0070062 // extracellular vesicular exosome // inferred from direct assay 52.62 40.44 5.46 0.00 0.00 -4.45
211784_s_at 211784_s_at BC006181 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006181.1 /DEF=Homo sapiens, Similar to splicing factor, arginineserine-rich 2 (SC-35), clone MGC:2622, mRNA, complete cds. /FEA=mRNA /PROD=Similar to splicing factor, arginineserine-rich2 (SC-35) /DB_XREF=gi:13544106 /FL=gb:BC006181.1 BC006181 serine/arginine-rich splicing factor 1 SRSF1 6426 NM_001078166 /// NM_006924 /// NR_034041 /// XM_006722012 /// XR_429911 /// XR_429912 /// XR_429999 /// XR_430000 /// XR_430001 /// XR_430002 /// XR_433418 /// XR_433419 /// XR_433420 /// XR_433421 /// XR_433422 0000395 // mRNA 5'-splice site recognition // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006376 // mRNA splice site selection // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from physical interaction /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // inferred from electronic annotation 175.07 401.44 5.46 0.00 0.00 -4.45
221804_s_at 221804_s_at BE565675 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE565675 /FEA=EST /DB_XREF=gi:9809395 /DB_XREF=est:601338460F1 /CLONE=IMAGE:3680703 /UG=Hs.267923 uncharacterized hypothalamus protein HT011 BE565675 family with sequence similarity 45, member A /// family with sequence similarity 45, member A pseudogene FAM45A /// FAM45B 55855 /// 404636 NM_018472 /// NM_207009 /// NR_027141 /// XM_005269833 /// XM_006717849 /// XM_006717850 /// XM_006717851 /// XM_006717852 62.10 279.98 5.45 0.00 0.00 -4.45
213249_at 213249_at AU145127 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU145127 /FEA=EST /DB_XREF=gi:11006648 /DB_XREF=est:AU145127 /CLONE=HEMBA1003978 /UG=Hs.76798 f-box and leucine-rich repeat protein 7 /FL=gb:AF199356.1 gb:NM_012304.1 AU145127 F-box and leucine-rich repeat protein 7 FBXL7 23194 NM_001278317 /// NM_012304 /// XM_005248273 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000151 // ubiquitin ligase complex // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -72.87 222.14 -5.45 0.00 0.00 -4.45
218412_s_at 218412_s_at NM_016328 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016328.1 /DEF=Homo sapiens GTF2I repeat domain-containing 1 (GTF2IRD1), mRNA. /FEA=mRNA /GEN=GTF2IRD1 /PROD=general transcription factor 3 /DB_XREF=gi:7705386 /UG=Hs.21075 GTF2I repeat domain-containing 1 /FL=gb:AF151354.1 gb:AF089107.1 gb:NM_016328.1 NM_016328 GTF2I repeat domain containing 1 GTF2IRD1 9569 NM_001199207 /// NM_005685 /// NM_016328 /// XM_005250720 /// XM_005250721 /// XM_006716182 /// XM_006716183 /// XM_006716184 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // non-traceable author statement -56.00 153.70 -5.45 0.00 0.00 -4.45
203505_at 203505_at AF285167 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF285167.1 /DEF=Homo sapiens ATP-binding cassette transporter 1 (ABCA1) mRNA, complete cds. /FEA=mRNA /GEN=ABCA1 /PROD=ATP-binding cassette transporter 1 /DB_XREF=gi:9755158 /UG=Hs.211562 ATP-binding cassette, sub-family A (ABC1), member 1 /FL=gb:AF165281.1 gb:NM_005502.1 gb:AF285167.1 AF285167 ATP-binding cassette, sub-family A (ABC1), member 1 ABCA1 19 NM_005502 /// XM_005251773 /// XM_005251774 /// XM_005251776 /// XM_005251778 /// XM_005251780 /// XM_006716995 0002790 // peptide secretion // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006497 // protein lipidation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from direct assay /// 0007186 // G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from direct assay /// 0010745 // negative regulation of macrophage derived foam cell differentiation // traceable author statement /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // traceable author statement /// 0015914 // phospholipid transport // inferred from electronic annotation /// 0016197 // endosomal transport // inferred from direct assay /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0032367 // intracellular cholesterol transport // inferred from mutant phenotype /// 0032489 // regulation of Cdc42 protein signal transduction // inferred from mutant phenotype /// 0033344 // cholesterol efflux // inferred from direct assay /// 0033344 // cholesterol efflux // inferred from mutant phenotype /// 0033700 // phospholipid efflux // inferred from direct assay /// 0033700 // phospholipid efflux // inferred from mutant phenotype /// 0034380 // high-density lipoprotein particle assembly // inferred from mutant phenotype /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0038027 // apolipoprotein A-I-mediated signaling pathway // inferred from direct assay /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from direct assay /// 0043691 // reverse cholesterol transport // inferred from mutant phenotype /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045332 // phospholipid translocation // inferred from electronic annotation /// 0050702 // interleukin-1 beta secretion // inferred from mutant phenotype /// 0055091 // phospholipid homeostasis // inferred from mutant phenotype /// 0055098 // response to low-density lipoprotein particle // inferred from expression pattern /// 0060155 // platelet dense granule organization // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071300 // cellular response to retinoic acid // inferred from electronic annotation /// 0071397 // cellular response to cholesterol // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred by curator /// 0005548 // phospholipid transporter activity // inferred from direct assay /// 0008509 // anion transmembrane transporter activity // inferred from sequence or structural similarity /// 0015485 // cholesterol binding // inferred by curator /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // inferred from direct assay /// 0019905 // syntaxin binding // inferred from physical interaction /// 0031267 // small GTPase binding // inferred from physical interaction /// 0034185 // apolipoprotein binding // inferred from physical interaction /// 0034186 // apolipoprotein A-I binding // inferred from physical interaction /// 0034188 // apolipoprotein A-I receptor activity // inferred from direct assay /// 0051117 // ATPase binding // inferred from physical interaction -48.48 42.29 -5.45 0.00 0.00 -4.45
213701_at 213701_at AW299245 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW299245 /FEA=EST /DB_XREF=gi:6708922 /DB_XREF=est:xs48d07.x1 /CLONE=IMAGE:2772877 /UG=Hs.62601 Homo sapiens mRNA; cDNA DKFZp586K1318 (from clone DKFZp586K1318) AW299245 chromosome 12 open reading frame 29 C12orf29 91298 NM_001009894 43.73 32.64 5.45 0.00 0.00 -4.45
204681_s_at 204681_s_at NM_012294 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012294.1 /DEF=Homo sapiens guanine nucleotide exchange factor for Rap1; M-Ras-regulated GEF (KIAA0277), mRNA. /FEA=mRNA /GEN=KIAA0277 /PROD=guanine nucleotide exchange factor for Rap1;M-Ras-regulated GEF /DB_XREF=gi:6912455 /UG=Hs.80620 guanine nucleotide exchange factor for Rap1; M-Ras-regulated GEF /FL=gb:D87467.1 gb:NM_012294.1 NM_012294 Rap guanine nucleotide exchange factor (GEF) 5 RAPGEF5 9771 NM_012294 /// XM_005249914 /// XM_005249915 /// XM_005249916 /// XM_005249917 /// XM_006715804 0007264 // small GTPase mediated signal transduction // non-traceable author statement /// 0007399 // nervous system development // non-traceable author statement /// 0032317 // regulation of Rap GTPase activity // inferred from direct assay /// 0032318 // regulation of Ras GTPase activity // traceable author statement /// 0032320 // positive regulation of Ras GTPase activity // traceable author statement /// 0032854 // positive regulation of Rap GTPase activity // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005088 // Ras guanyl-nucleotide exchange factor activity // traceable author statement /// 0017034 // Rap guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0030742 // GTP-dependent protein binding // inferred from physical interaction -55.10 79.92 -5.45 0.00 0.00 -4.45
209384_at 209384_at AA176833 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA176833 /FEA=EST /DB_XREF=gi:1757965 /DB_XREF=est:zp34f11.s1 /CLONE=IMAGE:611373 /UG=Hs.301959 proline synthetase co-transcribed (bacterial homolog) /FL=gb:AL136616.1 AA176833 proline synthetase co-transcribed homolog (bacterial) PROSC 11212 NM_007198 /// XM_005273395 1901605 // alpha-amino acid metabolic process // not recorded 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0030170 // pyridoxal phosphate binding // not recorded 74.00 223.47 5.44 0.00 0.00 -4.45
55093_at 55093_at AA534198 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA534198:nj21a11.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-993116 /clone_end=3' /gb=AA534198 /gi=2278214 /ug=Hs.86392 /len=603 AA534198 chondroitin polymerizing factor 2 CHPF2 54480 NM_001284295 /// NM_019015 0005975 // carbohydrate metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0050510 // N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity // inferred from electronic annotation 60.67 153.91 5.44 0.00 0.00 -4.45
219035_s_at 219035_s_at NM_025126 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025126.1 /DEF=Homo sapiens hypothetical protein FLJ21786 (FLJ21786), mRNA. /FEA=mRNA /GEN=FLJ21786 /PROD=hypothetical protein FLJ21786 /DB_XREF=gi:13376704 /UG=Hs.316809 hypothetical protein FLJ21786 /FL=gb:NM_025126.1 NM_025126 ring finger protein 34, E3 ubiquitin protein ligase RNF34 80196 NM_001256858 /// NM_025126 /// NM_194271 0006915 // apoptotic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2001271 // negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 1901981 // phosphatidylinositol phosphate binding // inferred from direct assay 62.35 214.38 5.44 0.00 0.00 -4.45
218527_at 218527_at NM_017692 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017692.1 /DEF=Homo sapiens hypothetical protein FLJ20157 (FLJ20157), mRNA. /FEA=mRNA /GEN=FLJ20157 /PROD=hypothetical protein FLJ20157 /DB_XREF=gi:8923155 /UG=Hs.14394 hypothetical protein FLJ20157 /FL=gb:BC001628.1 gb:NM_017692.1 NM_017692 aprataxin APTX 54840 NM_001195248 /// NM_001195249 /// NM_001195250 /// NM_001195251 /// NM_001195252 /// NM_001195254 /// NM_017692 /// NM_175069 /// NM_175072 /// NM_175073 /// NR_036576 /// NR_036577 /// NR_036578 /// NR_036579 /// XM_006716791 /// XM_006716792 /// XR_428423 0000012 // single strand break repair // inferred from direct assay /// 0000738 // DNA catabolic process, exonucleolytic // inferred from direct assay /// 0000738 // DNA catabolic process, exonucleolytic // inferred from electronic annotation /// 0006266 // DNA ligation // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from direct assay /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0098506 // polynucleotide 3' dephosphorylation // inferred from direct assay 0000785 // chromatin // inferred from direct assay /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008967 // phosphoglycolate phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033699 // DNA 5'-adenosine monophosphate hydrolase activity // inferred from direct assay /// 0046403 // polynucleotide 3'-phosphatase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 56.72 103.79 5.44 0.00 0.00 -4.45
218649_x_at 218649_x_at NM_004713 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004713.1 /DEF=Homo sapiens serologically defined colon cancer antigen 1 (SDCCAG1), mRNA. /FEA=mRNA /GEN=SDCCAG1 /PROD=serologically defined colon cancer antigen 1 /DB_XREF=gi:4759077 /UG=Hs.54900 serologically defined colon cancer antigen 1 /FL=gb:AF039687.1 gb:NM_004713.1 NM_004713 nuclear export mediator factor NEMF 9147 NM_004713 /// XM_005268199 /// XM_005268200 /// XM_005268201 /// XR_429334 0044780 // bacterial-type flagellum assembly // inferred from electronic annotation /// 0051168 // nuclear export // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 87.17 139.34 5.42 0.00 0.00 -4.45
218456_at 218456_at NM_023925 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023925.1 /DEF=Homo sapiens hypothetical protein FLJ22569 (FLJ22569), mRNA. /FEA=mRNA /GEN=FLJ22569 /PROD=hypothetical protein FLJ22569 /DB_XREF=gi:12965192 /UG=Hs.234355 hypothetical protein FLJ22569 /FL=gb:NM_023925.1 NM_023925 caprin family member 2 CAPRIN2 65981 NM_001002259 /// NM_001206856 /// NM_023925 /// NM_032156 /// NR_038177 /// XM_006719137 /// XM_006719138 /// XM_006719139 /// XM_006719140 /// XM_006719141 /// XM_006719142 /// XM_006719143 /// XM_006719144 /// XM_006719145 /// XM_006719146 /// XM_006719147 /// XM_006719148 0017148 // negative regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050775 // positive regulation of dendrite morphogenesis // inferred from sequence or structural similarity /// 0061003 // positive regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction 109.15 143.85 5.42 0.00 0.00 -4.45
209778_at 209778_at AF007217 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF007217.1 /DEF=Homo sapiens Trip230 mRNA, complete cds. /FEA=mRNA /GEN=Trip230 /PROD=Trip230 /DB_XREF=gi:2253416 /UG=Hs.85092 thyroid hormone receptor interactor 11 /FL=gb:NM_004239.1 gb:AF007217.1 AF007217 thyroid hormone receptor interactor 11 TRIP11 9321 NM_004239 /// XM_005268213 /// XM_005268214 /// XM_005268215 /// XM_006720321 0000042 // protein targeting to Golgi // inferred from electronic annotation /// 0003281 // ventricular septum development // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003713 // transcription coactivator activity // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -53.85 61.52 -5.42 0.00 0.00 -4.45
200873_s_at 200873_s_at NM_006585 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006585.1 /DEF=Homo sapiens chaperonin containing TCP1, subunit 8 (theta) (CCT8), mRNA. /FEA=mRNA /GEN=CCT8 /PROD=chaperonin containing TCP1, subunit 8 (theta) /DB_XREF=gi:6005726 /UG=Hs.15071 chaperonin containing TCP1, subunit 8 (theta) /FL=gb:D13627.1 gb:NM_006585.1 NM_006585 chaperonin containing TCP1, subunit 8 (theta) CCT8 10694 NM_001282907 /// NM_001282908 /// NM_001282909 /// NM_006585 0006200 // ATP catabolic process // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0016235 // aggresome // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0042623 // ATPase activity, coupled // traceable author statement /// 0051082 // unfolded protein binding // inferred from electronic annotation 178.60 808.77 5.41 0.00 0.00 -4.45
219099_at 219099_at NM_020375 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020375.1 /DEF=Homo sapiens chromosome 12 open reading frame 5 (C12ORF5), mRNA. /FEA=mRNA /GEN=C12ORF5 /PROD=chromosome 12 open reading frame 5 /DB_XREF=gi:9966848 /UG=Hs.24792 chromosome 12 open reading frame 5 /FL=gb:NM_020375.1 NM_020375 chromosome 12 open reading frame 5 C12orf5 57103 NM_020375 /// XM_006718993 0008152 // metabolic process // inferred from electronic annotation /// 0010666 // positive regulation of cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 1901525 // negative regulation of macromitophagy // inferred from electronic annotation /// 2000378 // negative regulation of reactive oxygen species metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 51.85 223.85 5.41 0.00 0.00 -4.45
222244_s_at 222244_s_at AK000749 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000749.1 /DEF=Homo sapiens cDNA FLJ20742 fis, clone HEP06891. /FEA=mRNA /DB_XREF=gi:7021031 /UG=Hs.52184 hypothetical protein FLJ20618 AK000749 taurine up-regulated 1 (non-protein coding) TUG1 55000 NR_002323 /// NR_110492 /// NR_110493 131.85 269.30 5.41 0.00 0.00 -4.45
202548_s_at 202548_s_at NM_003899 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003899.1 /DEF=Homo sapiens PAK-interacting exchange factor beta (P85SPR), mRNA. /FEA=mRNA /GEN=P85SPR /PROD=PAK-interacting exchange factor beta /DB_XREF=gi:4505572 /UG=Hs.172813 PAK-interacting exchange factor beta /FL=gb:D63476.1 gb:NM_003899.1 NM_003899 Rho guanine nucleotide exchange factor (GEF) 7 ARHGEF7 8874 NM_001113511 /// NM_001113512 /// NM_001113513 /// NM_003899 /// NM_145735 /// XM_005254085 /// XM_005254086 /// XM_005254087 /// XM_005254088 /// XM_005254089 /// XM_005254090 /// XM_005254091 /// XM_005254092 /// XM_005254093 /// XM_005254094 /// XM_005254095 /// XM_006719956 /// XM_006719957 /// XM_006719958 /// XM_006719959 /// XM_006719960 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from sequence or structural similarity /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction 60.75 438.73 5.41 0.00 0.00 -4.45
218754_at 218754_at NM_024654 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024654.1 /DEF=Homo sapiens hypothetical protein FLJ23323 (FLJ23323), mRNA. /FEA=mRNA /GEN=FLJ23323 /PROD=hypothetical protein FLJ23323 /DB_XREF=gi:13375902 /UG=Hs.59425 hypothetical protein FLJ23323 /FL=gb:NM_024654.1 NM_024654 nucleolar protein 9 NOL9 79707 NM_024654 /// XM_005263493 0000460 // maturation of 5.8S rRNA // inferred from mutant phenotype /// 0006364 // rRNA processing // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // traceable author statement /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0051731 // polynucleotide 5'-hydroxyl-kinase activity // inferred from direct assay 74.78 149.61 5.41 0.00 0.00 -4.45
177_at 177_at U38545 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank U38545 /FEATURE= /DEFINITION=HSU38545 Human ARF-activated phosphatidylcholine-specific phospholipase D1a (hPLD1) mRNA, complete cds U38545 phospholipase D1, phosphatidylcholine-specific PLD1 5337 NM_001130081 /// NM_002662 /// XM_005247533 /// XM_005247534 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006654 // phosphatidic acid biosynthetic process // traceable author statement /// 0006655 // phosphatidylglycerol biosynthetic process // traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0070290 // N-acylphosphatidylethanolamine-specific phospholipase D activity // inferred from electronic annotation -52.25 93.72 -5.41 0.00 0.00 -4.45
217751_at 217751_at NM_015917 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015917.1 /DEF=Homo sapiens glutathione S-transferase subunit 13 homolog (LOC51064), mRNA. /FEA=mRNA /GEN=LOC51064 /PROD=glutathione S-transferase subunit 13 homolog /DB_XREF=gi:7705703 /UG=Hs.279952 glutathione S-transferase subunit 13 homolog /FL=gb:AL136938.1 gb:BC001231.1 gb:AF070657.1 gb:AF068287.1 gb:NM_015917.1 NM_015917 glutathione S-transferase kappa 1 GSTK1 373156 NM_001143679 /// NM_001143680 /// NM_001143681 /// NM_015917 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 78.40 160.97 5.41 0.00 0.00 -4.45
202123_s_at 202123_s_at NM_005157 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005157.2 /DEF=Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 1 (ABL1), transcript variant a, mRNA. /FEA=mRNA /GEN=ABL1 /PROD=v-abl Abelson murine leukemia viral oncogenehomolog 1 isoform a /DB_XREF=gi:6382056 /UG=Hs.146355 v-abl Abelson murine leukemia viral oncogene homolog 1 /FL=gb:M14752.1 gb:NM_005157.2 NM_005157 ABL proto-oncogene 1, non-receptor tyrosine kinase ABL1 25 NM_005157 /// NM_007313 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006464 // cellular protein modification process // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0006975 // DNA damage induced protein phosphorylation // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // traceable author statement /// 0010506 // regulation of autophagy // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030100 // regulation of endocytosis // traceable author statement /// 0030155 // regulation of cell adhesion // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042692 // muscle cell differentiation // traceable author statement /// 0042770 // signal transduction in response to DNA damage // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051353 // positive regulation of oxidoreductase activity // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0071901 // negative regulation of protein serine/threonine kinase activity // inferred from direct assay /// 2000145 // regulation of cell motility // traceable author statement /// 2000249 // regulation of actin cytoskeleton reorganization // traceable author statement /// 2001020 // regulation of response to DNA damage stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 0003785 // actin monomer binding // traceable author statement /// 0004515 // nicotinate-nucleotide adenylyltransferase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from physical interaction /// 0070064 // proline-rich region binding // inferred from direct assay /// 0070064 // proline-rich region binding // inferred from physical interaction -261.00 462.60 -5.41 0.00 0.00 -4.45
201724_s_at 201724_s_at NM_020474 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020474.2 /DEF=Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1), mRNA. /FEA=mRNA /GEN=GALNT1 /PROD=polypeptide N-acetylgalactosaminyltransferase 1 /DB_XREF=gi:13124890 /UG=Hs.80120 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) /FL=gb:U41514.1 gb:NM_020474.2 NM_020474 polypeptide N-acetylgalactosaminyltransferase 1 GALNT1 2589 NM_020474 /// XM_005258239 0006486 // protein glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0016266 // O-glycan processing // traceable author statement /// 0018242 // protein O-linked glycosylation via serine // inferred from direct assay /// 0018243 // protein O-linked glycosylation via threonine // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 92.62 416.89 5.40 0.00 0.00 -4.45
218577_at 218577_at NM_017768 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017768.1 /DEF=Homo sapiens hypothetical protein FLJ20331 (FLJ20331), mRNA. /FEA=mRNA /GEN=FLJ20331 /PROD=hypothetical protein FLJ20331 /DB_XREF=gi:8923306 /UG=Hs.50848 hypothetical protein FLJ20331 /FL=gb:BC003407.1 gb:NM_017768.1 NM_017768 leucine rich repeat containing 40 LRRC40 55631 NM_017768 /// XM_005271013 /// XM_006710757 0016020 // membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 79.07 162.69 5.40 0.00 0.00 -4.45
201802_at 201802_at NM_004955 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004955.1 /DEF=Homo sapiens solute carrier family 29 (nucleoside transporters), member 1 (SLC29A1), mRNA. /FEA=mRNA /GEN=SLC29A1 /PROD=solute carrier family 29 (nucleosidetransporters), member 1 /DB_XREF=gi:4826715 /UG=Hs.25450 solute carrier family 29 (nucleoside transporters), member 1 /FL=gb:BC001382.1 gb:U81375.1 gb:AF079117.1 gb:NM_004955.1 NM_004955 solute carrier family 29 (equilibrative nucleoside transporter), member 1 SLC29A1 2030 NM_001078174 /// NM_001078175 /// NM_001078176 /// NM_001078177 /// NM_004955 /// XM_005248875 /// XM_005248876 /// XM_005248878 /// XM_005248879 /// XM_005248880 /// XM_005248881 /// XM_005248882 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0015858 // nucleoside transport // inferred from direct assay /// 0015862 // uridine transport // inferred from electronic annotation /// 0030431 // sleep // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 1901642 // nucleoside transmembrane transport // inferred from electronic annotation /// 1901642 // nucleoside transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005337 // nucleoside transmembrane transporter activity // inferred from electronic annotation 100.52 311.96 5.40 0.00 0.00 -4.45
212622_at 212622_at N64760 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N64760 /FEA=EST /DB_XREF=gi:1212589 /DB_XREF=est:yz30c06.s1 /CLONE=IMAGE:284554 /UG=Hs.174905 KIAA0033 protein N64760 transmembrane protein 41B TMEM41B 440026 NM_001165030 /// NM_015012 /// NR_028491 0007399 // nervous system development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 58.20 127.55 5.40 0.00 0.00 -4.45
212961_x_at 212961_x_at L43578 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:L43578.1 /DEF=Homo sapiens (clone 115392) mRNA. /FEA=mRNA /DB_XREF=gi:899067 /UG=Hs.82171 Homo sapiens (clone 115392) mRNA L43578 chromosome X open reading frame 40B CXorf40B 541578 NM_001013845 /// XM_005274698 /// XM_005274699 /// XM_005274700 /// XM_005274701 /// XM_005274702 /// XM_006724825 /// XM_006724826 /// XM_006724827 0005515 // protein binding // inferred from physical interaction 55.80 149.03 5.40 0.00 0.00 -4.45
215034_s_at 215034_s_at AI189753 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI189753 /FEA=EST /DB_XREF=gi:3740962 /DB_XREF=est:qd33a01.x1 /CLONE=IMAGE:1725480 /UG=Hs.306643 Homo sapiens cDNA FLJ13302 fis, clone OVARC1001357 AI189753 transmembrane 4 L six family member 1 TM4SF1 4071 NM_014220 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 308.18 833.09 5.40 0.00 0.00 -4.45
202134_s_at 202134_s_at NM_015472 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015472.1 /DEF=Homo sapiens transcriptional co-activator with PDZ-binding motif (TAZ) (TAZ), mRNA. /FEA=mRNA /GEN=TAZ /PROD=transcriptional co-activator with PDZ-bindingmotif (TAZ) /DB_XREF=gi:13346497 /UG=Hs.24341 transcriptional co-activator with PDZ-binding motif (TAZ) /FL=gb:NM_015472.1 NM_015472 WW domain containing transcription regulator 1 WWTR1 25937 NM_001168278 /// NM_001168280 /// NM_015472 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0017145 // stem cell division // inferred from direct assay /// 0032835 // glomerulus development // inferred from electronic annotation /// 0035329 // hippo signaling // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement /// 0035414 // negative regulation of catenin import into nucleus // inferred from mutant phenotype /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0060271 // cilium morphogenesis // inferred from electronic annotation /// 0060390 // regulation of SMAD protein import into nucleus // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation -244.65 371.73 -5.39 0.00 0.00 -4.45
201599_at 201599_at NM_000274 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000274.1 /DEF=Homo sapiens ornithine aminotransferase (gyrate atrophy) (OAT), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=OAT /PROD=ornithine aminotransferase precursor /DB_XREF=gi:4557808 /UG=Hs.75485 ornithine aminotransferase (gyrate atrophy) /FL=gb:BC000964.1 gb:M12267.1 gb:M23204.1 gb:M14963.1 gb:NM_000274.1 NM_000274 ornithine aminotransferase OAT 4942 NM_000274 /// NM_001171814 /// XM_006717871 0007601 // visual perception // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0034214 // protein hexamerization // inferred from direct assay /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055129 // L-proline biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004587 // ornithine-oxo-acid transaminase activity // not recorded /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 234.70 530.98 5.39 0.00 0.00 -4.45
202368_s_at 202368_s_at AI986461 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI986461 /FEA=EST /DB_XREF=gi:5813738 /DB_XREF=est:wz65f07.x1 /CLONE=IMAGE:2562949 /UG=Hs.153954 TRAM-like protein /FL=gb:D31762.1 gb:NM_012288.1 AI986461 translocation associated membrane protein 2 TRAM2 9697 NM_012288 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 153.43 253.36 5.39 0.00 0.00 -4.45
217993_s_at 217993_s_at NM_013283 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013283.1 /DEF=Homo sapiens methionine adenosyltransferase II, beta (MAT2B), mRNA. /FEA=mRNA /GEN=MAT2B /PROD=methionine adenosyltransferase II, beta /DB_XREF=gi:11034824 /UG=Hs.54642 methionine adenosyltransferase II, beta /FL=gb:NM_013283.1 gb:AF113225.1 gb:AL136664.1 gb:AF182814.1 NM_013283 methionine adenosyltransferase II, beta MAT2B 27430 NM_013283 /// NM_182796 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from direct assay /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0032259 // methylation // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045226 // extracellular polysaccharide biosynthetic process // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005622 // intracellular // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0048269 // methionine adenosyltransferase complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008831 // dTDP-4-dehydrorhamnose reductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0048270 // methionine adenosyltransferase regulator activity // inferred from direct assay /// 0050662 // coenzyme binding // inferred from electronic annotation -282.45 990.98 -5.39 0.00 0.00 -4.45
218696_at 218696_at NM_004836 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004836.1 /DEF=Homo sapiens eukaryotic translation initiation factor 2-alpha kinase 3 (EIF2AK3), mRNA. /FEA=mRNA /GEN=EIF2AK3 /PROD=eukaryotic translation initiation factor 2-alphakinase 3 /DB_XREF=gi:4758891 /UG=Hs.102506 eukaryotic translation initiation factor 2-alpha kinase 3 /FL=gb:AF110146.1 gb:NM_004836.1 gb:AF193339.1 NM_004836 eukaryotic translation initiation factor 2-alpha kinase 3 EIF2AK3 9451 NM_004836 /// XM_005264649 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001503 // ossification // inferred from mutant phenotype /// 0002063 // chondrocyte development // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0006983 // ER overload response // inferred from direct assay /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007595 // lactation // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0017148 // negative regulation of translation // traceable author statement /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from sequence or structural similarity /// 0030073 // insulin secretion // inferred from sequence or structural similarity /// 0030282 // bone mineralization // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from direct assay /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031016 // pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // inferred from mutant phenotype /// 0031642 // negative regulation of myelination // inferred from sequence or structural similarity /// 0032055 // negative regulation of translation in response to stress // inferred from electronic annotation /// 0032057 // negative regulation of translational initiation in response to stress // traceable author statement /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032933 // SREBP signaling pathway // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from mutant phenotype /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation 0005623 // cell // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred by curator /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // non-traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from direct assay /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from mutant phenotype /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 72.10 121.45 5.39 0.00 0.00 -4.45
209523_at 209523_at AK001618 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001618.1 /DEF=Homo sapiens cDNA FLJ10756 fis, clone NT2RP3004572, highly similar to Homo sapiens cofactor of initiator function mRNA. /FEA=mRNA /DB_XREF=gi:7022983 /UG=Hs.122752 TATA box binding protein (TBP)-associated factor, RNA polymerase II, B, 150kD /FL=gb:AF026445.1 gb:AF040701.1 gb:AF057694.1 gb:NM_003184.1 AK001618 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa TAF2 6873 NM_003184 /// XM_006716621 0000086 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0033276 // transcription factor TFTC complex // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from mutant phenotype 53.77 157.81 5.39 0.00 0.00 -4.45
205566_at 205566_at NM_007011 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007011.1 /DEF=Homo sapiens putative transmembrane protein (HS1-2), mRNA. /FEA=mRNA /GEN=HS1-2 /PROD=putative transmembrane protein /DB_XREF=gi:5901977 /UG=Hs.99364 putative transmembrane protein /FL=gb:NM_007011.1 NM_007011 abhydrolase domain containing 2 ABHD2 11057 NM_007011 /// NM_152924 /// XM_005254832 /// XM_005254833 0008152 // metabolic process // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation -44.67 96.31 -5.38 0.00 0.00 -4.45
214011_s_at 214011_s_at BE314601 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE314601 /FEA=EST /DB_XREF=gi:9135934 /DB_XREF=est:601149573F1 /CLONE=IMAGE:3502002 /UG=Hs.279918 hypothetical protein BE314601 NOP16 nucleolar protein NOP16 51491 NM_001256539 /// NM_001256540 /// NM_001291305 /// NM_001291306 /// NM_001291307 /// NM_001291308 /// NM_016391 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay 114.85 223.88 5.38 0.00 0.00 -4.45
205034_at 205034_at NM_004702 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004702.1 /DEF=Homo sapiens cyclin E2 (CCNE2), mRNA. /FEA=mRNA /GEN=CCNE2 /PROD=cyclin E2 /DB_XREF=gi:4757931 /UG=Hs.30464 cyclin E2 /FL=gb:AF091433.1 gb:AF102778.1 gb:AF106690.1 gb:NM_004702.1 NM_004702 cyclin E2 CCNE2 9134 NM_004702 /// NM_057735 /// NM_057749 0000075 // cell cycle checkpoint // traceable author statement /// 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006270 // DNA replication initiation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0016538 // cyclin-dependent protein serine/threonine kinase regulator activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation 44.32 44.39 5.38 0.00 0.00 -4.45
201500_s_at 201500_s_at NM_021959 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021959.1 /DEF=Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 11 (PPP1R11), mRNA. /FEA=mRNA /GEN=PPP1R11 /PROD=protein phosphatase 1, regulatory (inhibitor)subunit 11 /DB_XREF=gi:11386174 /UG=Hs.82887 protein phosphatase 1, regulatory (inhibitor) subunit 11 /FL=gb:NM_021959.1 NM_021959 protein phosphatase 1, regulatory (inhibitor) subunit 11 PPP1R11 6992 NM_021959 /// NM_170781 /// XM_005275158 /// XM_006715174 /// XM_006725042 /// XM_006725499 /// XM_006725713 /// XM_006725921 /// XM_006726016 /// XM_006726110 0043086 // negative regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 70.42 310.54 5.38 0.00 0.00 -4.45
209085_x_at 209085_x_at L14922 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L14922.1 /DEF=Homo sapiens DNA-binding protein (PO-GA) mRNA, complete cds. /FEA=mRNA /PROD=DNA-binding protein /DB_XREF=gi:307337 /UG=Hs.166563 replication factor C (activator 1) 1 (145kD) /FL=gb:AF040250.1 gb:L14922.1 L14922 replication factor C (activator 1) 1, 145kDa RFC1 5981 NM_001204747 /// NM_002913 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0000722 // telomere maintenance via recombination // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // traceable author statement /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006297 // nucleotide-excision repair, DNA gap filling // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // traceable author statement /// 0032201 // telomere maintenance via semi-conservative replication // traceable author statement /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005663 // DNA replication factor C complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003689 // DNA clamp loader activity // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -65.95 111.42 -5.37 0.00 0.00 -4.45
219920_s_at 219920_s_at NM_021971 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021971.1 /DEF=Homo sapiens GDP-mannose pyrophosphorylase B (GMPPB), transcript variant 2, mRNA. /FEA=mRNA /GEN=GMPPB /PROD=GDP-mannose pyrophosphorylase B, isoform 2 /DB_XREF=gi:11761620 /UG=Hs.28077 GDP-mannose pyrophosphorylase B /FL=gb:NM_021971.1 gb:BC001141.1 gb:AF135421.1 NM_021971 adhesion molecule with Ig-like domain 3 /// GDP-mannose pyrophosphorylase B AMIGO3 /// GMPPB 29925 /// 386724 NM_013334 /// NM_021971 /// NM_198722 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from sequence or structural similarity /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009298 // GDP-mannose biosynthetic process // inferred from electronic annotation /// 0009298 // GDP-mannose biosynthetic process // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004475 // mannose-1-phosphate guanylyltransferase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 63.05 81.95 5.37 0.00 0.00 -4.45
221729_at 221729_at AL575735 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL575735 /FEA=EST /DB_XREF=gi:12937190 /DB_XREF=est:AL575735 /CLONE=CS0DI070YK23 (3 prime) /UG=Hs.82985 collagen, type V, alpha 2 /FL=gb:NM_000393.1 AL575735 collagen, type V, alpha 2 COL5A2 1290 NM_000393 0001501 // skeletal system development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from mutant phenotype /// 0030199 // collagen fibril organization // inferred from sequence or structural similarity /// 0030574 // collagen catabolic process // traceable author statement /// 0043588 // skin development // inferred from mutant phenotype /// 0043588 // skin development // inferred from sequence or structural similarity /// 0048592 // eye morphogenesis // inferred from mutant phenotype /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005588 // collagen type V trimer // inferred from mutant phenotype /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // non-traceable author statement 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -148.57 618.61 -5.37 0.00 0.00 -4.45
212811_x_at 212811_x_at AI889380 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI889380 /FEA=EST /DB_XREF=gi:5594544 /DB_XREF=est:wm98e02.x1 /CLONE=IMAGE:2443994 /UG=Hs.286049 phosphoserine aminotransferase AI889380 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 SLC1A4 6509 NM_001135581 /// NM_001193493 /// NM_003038 /// XM_006712079 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006821 // chloride transport // inferred from direct assay /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0006868 // glutamine transport // traceable author statement /// 0015808 // L-alanine transport // inferred from direct assay /// 0015811 // L-cystine transport // inferred from direct assay /// 0015824 // proline transport // inferred from direct assay /// 0015825 // L-serine transport // inferred from direct assay /// 0015826 // threonine transport // inferred from direct assay /// 0034589 // hydroxyproline transport // inferred from direct assay /// 0035249 // synaptic transmission, glutamatergic // non-traceable author statement /// 0035524 // proline transmembrane transport // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement /// 1902476 // chloride transmembrane transport // inferred from direct assay 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005882 // intermediate filament // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred by curator /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0030425 // dendrite // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005254 // chloride channel activity // inferred from direct assay /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015180 // L-alanine transmembrane transporter activity // inferred from direct assay /// 0015184 // L-cystine transmembrane transporter activity // inferred from direct assay /// 0015186 // L-glutamine transmembrane transporter activity // traceable author statement /// 0015193 // L-proline transmembrane transporter activity // inferred from direct assay /// 0015194 // L-serine transmembrane transporter activity // inferred from direct assay /// 0015195 // L-threonine transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation /// 0034590 // L-hydroxyproline transmembrane transporter activity // inferred from direct assay -66.57 104.14 -5.37 0.00 0.00 -4.45
202419_at 202419_at NM_002035 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002035.1 /DEF=Homo sapiens follicular lymphoma variant translocation 1 (FVT1), mRNA. /FEA=mRNA /GEN=FVT1 /PROD=follicular lymphoma variant translocation 1 /DB_XREF=gi:4503816 /UG=Hs.74050 follicular lymphoma variant translocation 1 /FL=gb:NM_002035.1 NM_002035 3-ketodihydrosphingosine reductase KDSR 2531 NM_002035 /// XM_005266677 /// XM_006722433 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006666 // 3-keto-sphinganine metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047560 // 3-dehydrosphinganine reductase activity // inferred from direct assay -64.75 178.10 -5.37 0.00 0.00 -4.45
200654_at 200654_at J02783 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J02783.1 /DEF=Human thyroid hormone binding protein (p55) mRNA, complete cds. /FEA=mRNA /GEN=P4HB /DB_XREF=gi:339646 /UG=Hs.75655 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55) /FL=gb:J02783.1 gb:NM_000918.1 J02783 prolyl 4-hydroxylase, beta polypeptide P4HB 5034 NM_000918 0006457 // protein folding // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 1902175 // regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype 0005576 // extracellular region // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase complex // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // not recorded /// 0004656 // procollagen-proline 4-dioxygenase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -717.05 2574.75 -5.36 0.00 0.00 -4.45
202868_s_at 202868_s_at NM_006627 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006627.1 /DEF=Homo sapiens POP4 (processing of precursor , S. cerevisiae) homolog (POP4), mRNA. /FEA=mRNA /GEN=POP4 /PROD=POP4 (processing of precursor , S. cerevisiae)homolog /DB_XREF=gi:5729985 /UG=Hs.82238 POP4 (processing of precursor , S. cerevisiae) homolog /FL=gb:BC004438.1 gb:AF001176.2 gb:NM_006627.1 NM_006627 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) POP4 10775 NM_006627 /// NR_027368 0006364 // rRNA processing // inferred from electronic annotation /// 0006379 // mRNA cleavage // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // traceable author statement /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // traceable author statement 0000172 // ribonuclease MRP complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005655 // nucleolar ribonuclease P complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0030677 // ribonuclease P complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 52.10 179.30 5.36 0.00 0.00 -4.45
219568_x_at 219568_x_at NM_018419 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018419.1 /DEF=Homo sapiens SRY (sex determining region Y)-box 18 (SOX18), mRNA. /FEA=mRNA /GEN=SOX18 /PROD=SRY (sex determining region Y)-box 18 /DB_XREF=gi:8924247 /UG=Hs.8619 SRY (sex determining region Y)-box 18 /FL=gb:AF270652.1 gb:AB033888.1 gb:NM_018419.1 NM_018419 SRY (sex determining region Y)-box 18 SOX18 54345 NM_018419 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001525 // angiogenesis // inferred from expression pattern /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001944 // vasculature development // inferred from sequence or structural similarity /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0001946 // lymphangiogenesis // inferred from mutant phenotype /// 0001947 // heart looping // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0022405 // hair cycle process // inferred from mutant phenotype /// 0035050 // embryonic heart tube development // inferred from sequence or structural similarity /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from direct assay /// 0043534 // blood vessel endothelial cell migration // inferred from expression pattern /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048469 // cell maturation // inferred from electronic annotation /// 0048866 // stem cell fate specification // inferred from electronic annotation /// 0060214 // endocardium formation // inferred from sequence or structural similarity /// 0060836 // lymphatic endothelial cell differentiation // inferred from sequence or structural similarity /// 0060956 // endocardial cell differentiation // inferred from sequence or structural similarity /// 0061028 // establishment of endothelial barrier // inferred from mutant phenotype /// 0072091 // regulation of stem cell proliferation // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay 84.53 92.94 5.36 0.00 0.00 -4.45
201377_at 201377_at NM_014847 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014847.1 /DEF=Homo sapiens KIAA0144 gene product (KIAA0144), mRNA. /FEA=mRNA /GEN=KIAA0144 /PROD=KIAA0144 gene product /DB_XREF=gi:7661941 /UG=Hs.8127 KIAA0144 gene product /FL=gb:D63478.1 gb:NM_014847.1 NM_014847 ubiquitin associated protein 2-like UBAP2L 9898 NM_001127320 /// NM_001287815 /// NM_001287816 /// NM_014847 /// XM_005245658 /// XM_005245667 /// XM_005245668 /// XM_005245669 /// XM_005245670 /// XM_005245672 /// XM_005245673 /// XM_005245674 /// XM_006711679 /// XM_006711680 /// XM_006711681 /// XM_006711682 /// XM_006711683 /// XM_006711684 /// XM_006711685 /// XM_006711686 /// XM_006711687 /// XM_006711688 /// XM_006711689 0007339 // binding of sperm to zona pellucida // inferred from mutant phenotype 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 101.50 132.78 5.36 0.00 0.00 -4.45
203087_s_at 203087_s_at NM_004520 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004520.1 /DEF=Homo sapiens kinesin heavy chain member 2 (KIF2), mRNA. /FEA=mRNA /GEN=KIF2 /PROD=kinesin heavy chain member 2 /DB_XREF=gi:4758643 /UG=Hs.113319 kinesin heavy chain member 2 /FL=gb:NM_004520.1 NM_004520 kinesin heavy chain member 2A KIF2A 3796 NM_001098511 /// NM_001243952 /// NM_001243953 /// NM_004520 0000278 // mitotic cell cycle // traceable author statement /// 0007018 // microtubule-based movement // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // inferred from direct assay /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // traceable author statement /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation -97.17 258.34 -5.36 0.00 0.00 -4.45
201609_x_at 201609_x_at AL578502 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL578502 /FEA=EST /DB_XREF=gi:12942638 /DB_XREF=est:AL578502 /CLONE=CS0DK011YK08 (3 prime) /UG=Hs.183212 isoprenylcysteine carboxyl methyltransferase /FL=gb:AF064084.1 gb:NM_012405.1 gb:AF173157.1 AL578502 isoprenylcysteine carboxyl methyltransferase ICMT 23463 NM_012405 /// NM_170705 /// XM_005263437 /// XM_006710518 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006479 // protein methylation // inferred from electronic annotation /// 0006481 // C-terminal protein methylation // inferred from electronic annotation /// 0006612 // protein targeting to membrane // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0046578 // regulation of Ras protein signal transduction // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0003880 // protein C-terminal carboxyl O-methyltransferase activity // traceable author statement /// 0004671 // protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity // inferred from electronic annotation /// 0008140 // cAMP response element binding protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 75.58 156.44 5.36 0.00 0.00 -4.45
200864_s_at 200864_s_at NM_004663 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004663.1 /DEF=Homo sapiens RAB11A, member RAS oncogene family (RAB11A), mRNA. /FEA=mRNA /GEN=RAB11A /PROD=RAB11A, member RAS oncogene family /DB_XREF=gi:4758983 /UG=Hs.75618 RAB11A, member RAS oncogene family /FL=gb:AF000231.1 gb:NM_004663.1 NM_004663 RAB11A, member RAS oncogene family RAB11A 8766 NM_001206836 /// NM_004663 0000910 // cytokinesis // inferred from mutant phenotype /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032402 // melanosome transport // inferred from sequence or structural similarity /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048227 // plasma membrane to endosome transport // non-traceable author statement /// 0051223 // regulation of protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0072659 // protein localization to plasma membrane // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from sequence or structural similarity /// 0055038 // recycling endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019905 // syntaxin binding // non-traceable author statement 68.40 84.15 5.35 0.00 0.00 -4.45
208644_at 208644_at M32721 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M32721.1 /DEF=Human poly(ADP-ribose) polymerase mRNA, complete cds. /FEA=mRNA /GEN=PPOL /DB_XREF=gi:190266 /UG=Hs.177766 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) /FL=gb:NM_001618.2 gb:M18112.1 gb:M32721.1 gb:J03473.1 M32721 poly (ADP-ribose) polymerase 1 PARP1 142 NM_001618 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006471 // protein ADP-ribosylation // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016540 // protein autoprocessing // inferred from electronic annotation /// 0023019 // signal transduction involved in regulation of gene expression // inferred from electronic annotation /// 0030225 // macrophage differentiation // traceable author statement /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0040009 // regulation of growth rate // inferred from electronic annotation /// 0042769 // DNA damage response, detection of DNA damage // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein import into nucleus // inferred from electronic annotation /// 0070212 // protein poly-ADP-ribosylation // inferred from direct assay /// 2000679 // positive regulation of transcription regulatory region DNA binding // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 0003950 // NAD+ ADP-ribosyltransferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051287 // NAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // inferred from electronic annotation 87.98 196.64 5.35 0.00 0.00 -4.45
221748_s_at 221748_s_at AL046979 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL046979 /FEA=EST /DB_XREF=gi:5435035 /DB_XREF=est:DKFZp586K0617_s1 /CLONE=DKFZp586K0617 /UG=Hs.9973 tensin AL046979 tensin 1 TNS1 7145 NM_022648 /// XM_005246825 /// XM_005246826 /// XM_006712721 /// XM_006712722 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030055 // cell-substrate junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 59.87 158.71 5.35 0.00 0.00 -4.45
221937_at 221937_at AI472320 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI472320 /FEA=EST /DB_XREF=gi:4334410 /DB_XREF=est:tj87c02.x1 /CLONE=IMAGE:2148482 /UG=Hs.48504 ESTs, Moderately similar to ALU5_HUMAN ALU SUBFAMILY SC SEQUENCE CONTAMINATION WARNING ENTRY H.sapiens AI472320 synergin, gamma SYNRG 11276 NM_001163544 /// NM_001163545 /// NM_001163546 /// NM_001163547 /// NM_007247 /// NM_080550 /// NM_198882 /// XM_005256980 /// XM_005256981 /// XM_005256982 /// XM_005256983 /// XM_005256985 /// XM_005256986 /// XM_005256988 /// XM_006721652 /// XM_006721653 /// XM_006721654 /// XM_006721655 /// XM_006725301 /// XM_006725302 /// XM_006725303 /// XM_006725304 /// XM_006725305 /// XM_006725306 /// XM_006725307 /// XM_006725308 /// XM_006725309 /// XM_006725310 /// XM_006725311 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030121 // AP-1 adaptor complex // traceable author statement 0005509 // calcium ion binding // inferred from electronic annotation 78.32 77.59 5.35 0.00 0.00 -4.45
212072_s_at 212072_s_at AL049761 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049761 /DEF=Human DNA sequence from clone RP5-863C7 on chromosome 20p12.3-13. Contains the CSNK2A1 gene for casein kinase 2 alpha 1 polypeptide (EC 2.7.1.37), ESTs, STSs and GSSs /FEA=mRNA_2 /DB_XREF=gi:5738437 /UG=Hs.155140 casein kinase 2, alpha 1 polypeptide AL049761 casein kinase 2, alpha 1 polypeptide CSNK2A1 1457 NM_001895 /// NM_177559 /// NM_177560 /// XM_006723548 0000278 // mitotic cell cycle // traceable author statement /// 0001558 // regulation of cell growth // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // traceable author statement /// 0071174 // mitotic spindle checkpoint // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005956 // protein kinase CK2 complex // traceable author statement /// 0016580 // Sin3 complex // inferred from direct assay /// 0016581 // NuRD complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019888 // protein phosphatase regulator activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051879 // Hsp90 protein binding // traceable author statement -67.45 200.40 -5.35 0.00 0.00 -4.45
212609_s_at 212609_s_at U79271 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U79271.1 /DEF=Human clones 23920 and 23921 mRNA sequence. /FEA=mRNA /DB_XREF=gi:1710237 /UG=Hs.300642 serologically defined colon cancer antigen 8 U79271 v-akt murine thymoma viral oncogene homolog 3 AKT3 10000 NM_001206729 /// NM_005465 /// NM_181690 /// XM_005272994 /// XM_005272995 /// XM_005272997 /// XM_006711725 /// XM_006711726 /// XM_006724959 /// XM_006724960 /// XM_006724961 /// XM_006724962 /// XM_006724963 0000002 // mitochondrial genome maintenance // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 49.77 86.56 5.35 0.00 0.00 -4.45
208863_s_at 208863_s_at M72709 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M72709.1 /DEF=Human alternative splicing factor mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:179073 /UG=Hs.73737 splicing factor, arginineserine-rich 1 (splicing factor 2, alternate splicing factor) /FL=gb:M72709.1 M72709 serine/arginine-rich splicing factor 1 SRSF1 6426 NM_001078166 /// NM_006924 /// NR_034041 /// XM_006722012 /// XR_429911 /// XR_429912 /// XR_429999 /// XR_430000 /// XR_430001 /// XR_430002 /// XR_433418 /// XR_433419 /// XR_433420 /// XR_433421 /// XR_433422 0000395 // mRNA 5'-splice site recognition // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006376 // mRNA splice site selection // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from physical interaction /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // inferred from electronic annotation 70.45 175.80 5.35 0.00 0.00 -4.45
202706_s_at 202706_s_at D86227 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D86227.1 /DEF=Homo sapiens clone TA-UMPSpoly mRNA for UMP synthase, complete cds. /FEA=mRNA /GEN=UMPS /PROD=UMP synthase /DB_XREF=gi:2081619 /UG=Hs.2057 uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5-decarboxylase) /FL=gb:BC000364.1 gb:D86227.1 gb:D86228.1 gb:D86230.1 gb:J03626.1 gb:NM_000373.1 D86227 uridine monophosphate synthetase UMPS 7372 NM_000373 /// NR_033434 /// NR_033437 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006207 // 'de novo' pyrimidine nucleobase biosynthetic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006222 // UMP biosynthetic process // inferred from direct assay /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0044205 // 'de novo' UMP biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046134 // pyrimidine nucleoside biosynthetic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004588 // orotate phosphoribosyltransferase activity // inferred from direct assay /// 0004588 // orotate phosphoribosyltransferase activity // traceable author statement /// 0004590 // orotidine-5'-phosphate decarboxylase activity // inferred from direct assay /// 0004590 // orotidine-5'-phosphate decarboxylase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 79.45 104.65 5.33 0.00 0.00 -4.45
217786_at 217786_at NM_006109 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006109.1 /DEF=Homo sapiens skb1 (S. pombe) homolog (SKB1), mRNA. /FEA=mRNA /GEN=SKB1 /PROD=skb1 (S. pombe) homolog /DB_XREF=gi:5174682 /UG=Hs.12912 skb1 (S. pombe) homolog /FL=gb:AF015913.1 gb:NM_006109.1 gb:AF167572.1 NM_006109 protein arginine methyltransferase 5 PRMT5 10419 NM_001039619 /// NM_001282953 /// NM_001282954 /// NM_001282955 /// NM_001282956 /// NM_006109 /// XR_429287 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000387 // spliceosomal snRNP assembly // inferred from mutant phenotype /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // not recorded /// 0006479 // protein methylation // inferred from electronic annotation /// 0007088 // regulation of mitosis // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018216 // peptidyl-arginine methylation // inferred from mutant phenotype /// 0019918 // peptidyl-arginine methylation, to symmetrical-dimethyl arginine // inferred from mutant phenotype /// 0032259 // methylation // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0034660 // ncRNA metabolic process // traceable author statement /// 0035246 // peptidyl-arginine N-methylation // inferred from direct assay /// 0042118 // endothelial cell activation // inferred from mutant phenotype /// 0043985 // histone H4-R3 methylation // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0034709 // methylosome // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0001046 // core promoter sequence-specific DNA binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from direct assay /// 0008469 // histone-arginine N-methyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0035243 // protein-arginine omega-N symmetric methyltransferase activity // inferred from mutant phenotype /// 0043021 // ribonucleoprotein complex binding // inferred from physical interaction 91.27 164.96 5.33 0.00 0.00 -4.45
220748_s_at 220748_s_at NM_016202 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016202.1 /DEF=Homo sapiens LDL induced EC protein (LOC51157), mRNA. /FEA=mRNA /GEN=LOC51157 /PROD=LDL induced EC protein /DB_XREF=gi:7705880 /UG=Hs.94392 LDL induced EC protein /FL=gb:AF184939.1 gb:NM_016202.1 NM_016202 zinc finger protein 580 ZNF580 51157 NM_001163423 /// NM_016202 /// NM_207115 /// XM_005258967 /// XM_005258968 /// XM_006723236 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0002690 // positive regulation of leukocyte chemotaxis // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0032757 // positive regulation of interleukin-8 production // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay 0005634 // nucleus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 86.85 70.90 5.33 0.00 0.00 -4.45
215691_x_at 215691_x_at AV702994 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV702994 /FEA=EST /DB_XREF=gi:10719324 /DB_XREF=est:AV702994 /CLONE=ADBAPB06 /UG=Hs.46967 HSPCO34 protein AV702994 heat shock protein family B (small), member 11 HSPB11 51668 NM_016126 /// XM_005270942 /// XM_005270943 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from sequence or structural similarity 0005929 // cilium // inferred from electronic annotation /// 0030992 // intraciliary transport particle B // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0046872 // metal ion binding // inferred from electronic annotation 64.88 138.96 5.33 0.00 0.00 -4.45
204088_at 204088_at NM_002560 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002560.1 /DEF=Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 4 (P2RX4), mRNA. /FEA=mRNA /GEN=P2RX4 /PROD=purinergic receptor P2X, ligand-gated ionchannel, 4 /DB_XREF=gi:4505548 /UG=Hs.321709 purinergic receptor P2X, ligand-gated ion channel, 4 /FL=gb:U83993.1 gb:NM_002560.1 NM_002560 purinergic receptor P2X, ligand-gated ion channel, 4 P2RX4 5025 NM_001256796 /// NM_001261397 /// NM_001261398 /// NM_002560 /// NM_175567 /// NM_175568 /// NR_046372 /// NR_046373 /// XR_429105 0001894 // tissue homeostasis // non-traceable author statement /// 0002028 // regulation of sodium ion transport // inferred from sequence or structural similarity /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from direct assay /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from direct assay /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0010614 // negative regulation of cardiac muscle hypertrophy // inferred from mutant phenotype /// 0019228 // neuronal action potential // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from sequence or structural similarity /// 0032308 // positive regulation of prostaglandin secretion // non-traceable author statement /// 0033198 // response to ATP // inferred from direct assay /// 0034220 // ion transmembrane transport // inferred from direct assay /// 0034405 // response to fluid shear stress // inferred from direct assay /// 0035590 // purinergic nucleotide receptor signaling pathway // inferred from mutant phenotype /// 0042118 // endothelial cell activation // traceable author statement /// 0042311 // vasodilation // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // non-traceable author statement /// 0050850 // positive regulation of calcium-mediated signaling // inferred from direct assay /// 0050850 // positive regulation of calcium-mediated signaling // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from direct assay /// 0051928 // positive regulation of calcium ion transport // non-traceable author statement /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0055119 // relaxation of cardiac muscle // inferred from mutant phenotype /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0071318 // cellular response to ATP // inferred from direct assay /// 0097190 // apoptotic signaling pathway // inferred from direct assay 0005639 // integral component of nuclear inner membrane // not recorded /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // inferred by curator /// 0005887 // integral component of plasma membrane // inferred from mutant phenotype /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043195 // terminal bouton // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001614 // purinergic nucleotide receptor activity // inferred from direct assay /// 0001614 // purinergic nucleotide receptor activity // inferred from mutant phenotype /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred by curator /// 0008144 // drug binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // non-traceable author statement /// 0045296 // cadherin binding // inferred from physical interaction -96.13 230.21 -5.32 0.00 0.00 -4.45
209037_s_at 209037_s_at AW182860 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW182860 /FEA=EST /DB_XREF=gi:6451320 /DB_XREF=est:xj64g08.x1 /CLONE=IMAGE:2662046 /UG=Hs.155119 EH domain containing 1 /FL=gb:AF001434.1 AW182860 EH-domain containing 1 EHD1 10938 NM_001282444 /// NM_001282445 /// NM_006795 /// XM_006718424 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0010886 // positive regulation of cholesterol storage // inferred from sequence or structural similarity /// 0016197 // endosomal transport // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0032456 // endocytic recycling // inferred from genetic interaction /// 0032456 // endocytic recycling // inferred from mutant phenotype /// 0034383 // low-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from physical interaction /// 1901741 // positive regulation of myoblast fusion // inferred from sequence or structural similarity /// 1990090 // cellular response to nerve growth factor stimulus // inferred from sequence or structural similarity /// 2001137 // positive regulation of endocytic recycling // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0010008 // endosome membrane // inferred from sequence or structural similarity /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031095 // platelet dense tubular network membrane // inferred from sequence or structural similarity /// 0031901 // early endosome membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -46.12 84.46 -5.32 0.00 0.00 -4.45
206283_s_at 206283_s_at NM_003189 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003189.1 /DEF=Homo sapiens T-cell acute lymphocytic leukemia 1 (TAL1), mRNA. /FEA=mRNA /GEN=TAL1 /PROD=T-cell acute lymphocytic leukemia 1 /DB_XREF=gi:4507362 /UG=Hs.73828 T-cell acute lymphocytic leukemia 1 /FL=gb:M29038.1 gb:NM_003189.1 gb:M61108.1 NM_003189 T-cell acute lymphocytic leukemia 1 TAL1 6886 NM_001287347 /// NM_001290403 /// NM_001290404 /// NM_001290405 /// NM_001290406 /// NM_003189 /// XM_005271158 /// XM_005271159 /// XM_005271160 /// XM_006710862 /// XM_006710863 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0021527 // spinal cord association neuron differentiation // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from expression pattern /// 0030218 // erythrocyte differentiation // inferred from mutant phenotype /// 0030219 // megakaryocyte differentiation // inferred from expression pattern /// 0030220 // platelet formation // inferred from electronic annotation /// 0030221 // basophil differentiation // inferred from expression pattern /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0035162 // embryonic hemopoiesis // inferred from sequence or structural similarity /// 0035855 // megakaryocyte development // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043249 // erythrocyte maturation // inferred from electronic annotation /// 0045165 // cell fate commitment // inferred from sequence or structural similarity /// 0045637 // regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // inferred from direct assay /// 0045648 // positive regulation of erythrocyte differentiation // inferred from sequence or structural similarity /// 0045799 // positive regulation of chromatin assembly or disassembly // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048699 // generation of neurons // inferred from electronic annotation /// 0051781 // positive regulation of cell division // inferred from mutant phenotype /// 0060018 // astrocyte fate commitment // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060217 // hemangioblast cell differentiation // inferred from electronic annotation /// 0060218 // hematopoietic stem cell differentiation // inferred from electronic annotation /// 0060375 // regulation of mast cell differentiation // inferred from electronic annotation /// 2000036 // regulation of stem cell maintenance // inferred from electronic annotation 0000118 // histone deacetylase complex // inferred from direct assay /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from direct assay /// 0033193 // Lsd1/2 complex // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from electronic annotation /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from direct assay 71.77 116.16 5.31 0.00 0.00 -4.45
204549_at 204549_at NM_014002 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014002.1 /DEF=Homo sapiens IKK-related kinase epsilon; inducible IkappaB kinase (IKKE), mRNA. /FEA=mRNA /GEN=IKKE /PROD=IKK-related kinase epsilon /DB_XREF=gi:7661945 /UG=Hs.321045 IKK-related kinase epsilon; inducible IkappaB kinase /FL=gb:D63485.1 gb:AB016590.1 gb:AF241789.1 gb:NM_014002.1 NM_014002 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon IKBKE 9641 NM_001193321 /// NM_001193322 /// NM_014002 /// XM_005273356 /// XM_006711641 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006955 // immune response // non-traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007252 // I-kappaB phosphorylation // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038061 // NIK/NF-kappaB signaling // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0045087 // innate immune response // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0016605 // PML body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004704 // NF-kappaB-inducing kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008384 // IkappaB kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -59.75 109.45 -5.31 0.00 0.00 -4.45
207339_s_at 207339_s_at NM_002341 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002341.1 /DEF=Homo sapiens lymphotoxin beta (TNF superfamily, member 3) (LTB), transcript variant 1, mRNA. /FEA=mRNA /GEN=LTB /PROD=lymphotoxin-beta isoform a /DB_XREF=gi:4505034 /UG=Hs.890 lymphotoxin beta (TNF superfamily, member 3) /FL=gb:L11015.1 gb:NM_002341.1 NM_002341 lymphotoxin beta (TNF superfamily, member 3) LTB 4050 NM_002341 /// NM_009588 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0010467 // gene expression // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from sequence or structural similarity /// 0048535 // lymph node development // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -59.85 43.75 -5.31 0.00 0.00 -4.45
201980_s_at 201980_s_at NM_012425 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012425.2 /DEF=Homo sapiens Ras suppressor protein 1 (RSU1), mRNA. /FEA=mRNA /GEN=RSU1 /PROD=ras suppressor protein 1 /DB_XREF=gi:10800408 /UG=Hs.75551 Homo sapiens Ras suppressor protein 1 (RSU1), mRNA /FL=gb:NM_012425.2 NM_012425 Ras suppressor protein 1 RSU1 6251 NM_012425 /// NM_152724 /// XM_005252552 0007165 // signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 66.02 214.64 5.31 0.00 0.00 -4.45
207435_s_at 207435_s_at NM_016333 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016333.1 /DEF=Homo sapiens RNA binding protein; AT-rich element binding factor (SRM300), mRNA. /FEA=mRNA /GEN=SRM300 /PROD=splicing coactivator subunit SRm300 /DB_XREF=gi:7706718 /UG=Hs.197114 RNA binding protein; AT-rich element binding factor /FL=gb:AF201422.1 gb:NM_016333.1 NM_016333 serine/arginine repetitive matrix 2 SRRM2 23524 NM_016333 /// XM_005255225 /// XM_005255226 /// XM_005255227 /// XM_006720872 /// XM_006720873 /// XM_006720874 /// XR_243270 /// XR_243271 /// XR_429640 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0070742 // C2H2 zinc finger domain binding // inferred from direct assay 118.65 197.70 5.29 0.00 0.00 -4.45
220305_at 220305_at NM_024030 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024030.1 /DEF=Homo sapiens hypothetical protein MGC3260 (MGC3260), mRNA. /FEA=mRNA /GEN=MGC3260 /PROD=hypothetical protein MGC3260 /DB_XREF=gi:13128977 /UG=Hs.15514 hypothetical protein MGC3260 /FL=gb:BC000073.1 gb:NM_024030.1 NM_024030 mitochondrial antiviral signaling protein MAVS 57506 NM_001206491 /// NM_020746 /// NR_037921 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0002218 // activation of innate immune response // inferred from mutant phenotype /// 0002230 // positive regulation of defense response to virus by host // inferred from direct assay /// 0002230 // positive regulation of defense response to virus by host // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // inferred from electronic annotation /// 0032727 // positive regulation of interferon-alpha production // inferred from direct assay /// 0032727 // positive regulation of interferon-alpha production // inferred from mutant phenotype /// 0032728 // positive regulation of interferon-beta production // inferred from direct assay /// 0032728 // positive regulation of interferon-beta production // inferred from mutant phenotype /// 0032757 // positive regulation of interleukin-8 production // inferred from direct assay /// 0032760 // positive regulation of tumor necrosis factor production // inferred from direct assay /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from direct assay /// 0039529 // RIG-I signaling pathway // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from mutant phenotype /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045087 // innate immune response // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051607 // defense response to virus // inferred from direct assay /// 0060340 // positive regulation of type I interferon-mediated signaling pathway // inferred from direct assay /// 0071360 // cellular response to exogenous dsRNA // inferred from mutant phenotype /// 0071651 // positive regulation of chemokine (C-C motif) ligand 5 production // inferred from direct assay /// 0071660 // positive regulation of IP-10 production // inferred from direct assay /// 1900063 // regulation of peroxisome organization // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0050700 // CARD domain binding // inferred from physical interaction 60.35 49.67 5.29 0.00 0.00 -4.45
211090_s_at 211090_s_at Z25435 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:Z25435.1 /DEF=H.sapiens protein-serinethreonine kinase gene, complete CDS. /FEA=mRNA /PROD=protein-serinethreonine kinase /DB_XREF=gi:405748 /FL=gb:Z25435.1 Z25435 pre-mRNA processing factor 4B PRPF4B 8899 NM_003913 /// NM_176800 /// XM_006715238 /// XR_241936 /// XR_241940 /// XR_241944 /// XR_241945 /// XR_241947 /// XR_241948 /// XR_241949 /// XR_427838 /// XR_427839 /// XR_427840 /// XR_427841 /// XR_427842 /// XR_427843 /// XR_427844 /// XR_427845 /// XR_427846 /// XR_427847 /// XR_427848 /// XR_427849 /// XR_427850 /// XR_427851 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 101.33 110.86 5.29 0.00 0.00 -4.45
217844_at 217844_at NM_021198 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021198.1 /DEF=Homo sapiens nuclear LIM interactor-interacting factor (NLI-IF), mRNA. /FEA=mRNA /GEN=NLI-IF /PROD=nuclear LIM interactor-interacting factor /DB_XREF=gi:10864008 /UG=Hs.283724 nuclear LIM interactor-interacting factor /FL=gb:AF229162.1 gb:NM_021198.1 NM_021198 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 CTDSP1 58190 NM_001206878 /// NM_001206879 /// NM_021198 /// NM_182642 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008420 // CTD phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -89.42 183.94 -5.29 0.00 0.00 -4.45
209311_at 209311_at D87461 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D87461.1 /DEF=Human mRNA for KIAA0271 gene, complete cds. /FEA=mRNA /GEN=KIAA0271 /DB_XREF=gi:1944417 /UG=Hs.75244 BCL2-like 2 /FL=gb:U59747.1 gb:D87461.1 gb:NM_004050.1 D87461 BCL2-like 2 BCL2L2 599 NM_001199839 /// NM_004050 0006915 // apoptotic process // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0060011 // Sertoli cell proliferation // inferred from electronic annotation /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // not recorded /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051400 // BH domain binding // inferred from electronic annotation 53.35 60.90 5.29 0.00 0.00 -4.45
204897_at 204897_at AA897516 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA897516 /FEA=EST /DB_XREF=gi:3034136 /DB_XREF=est:aj62c04.s1 /CLONE=IMAGE:1394886 /UG=Hs.199248 prostaglandin E receptor 4 (subtype EP4) /FL=gb:D28472.1 gb:L25124.1 gb:NM_000958.1 gb:L28175.1 AA897516 prostaglandin E receptor 4 (subtype EP4) PTGER4 5734 NM_000958 /// XM_005248326 /// XM_005248327 0006955 // immune response // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007254 // JNK cascade // inferred from sequence or structural similarity /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033624 // negative regulation of integrin activation // inferred from direct assay /// 0042093 // T-helper cell differentiation // inferred from sequence or structural similarity /// 0050710 // negative regulation of cytokine secretion // inferred from sequence or structural similarity /// 0050715 // positive regulation of cytokine secretion // inferred from sequence or structural similarity /// 0050728 // negative regulation of inflammatory response // inferred from direct assay /// 0050729 // positive regulation of inflammatory response // inferred from sequence or structural similarity /// 0051492 // regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0060348 // bone development // inferred from sequence or structural similarity /// 0070371 // ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0071260 // cellular response to mechanical stimulus // inferred from sequence or structural similarity /// 2000420 // negative regulation of eosinophil extravasation // inferred from direct assay 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004955 // prostaglandin receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 133.90 308.10 5.29 0.00 0.00 -4.45
208954_s_at 208954_s_at BC003381 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003381.1 /DEF=Homo sapiens, clone MGC:5353, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:5353) /DB_XREF=gi:13097242 /UG=Hs.78851 KIAA0217 protein /FL=gb:BC003381.1 BC003381 La ribonucleoprotein domain family, member 4B LARP4B 23185 NM_015155 /// XM_005252431 /// XM_005252432 /// XM_005252433 /// XM_005252435 /// XM_006717436 0006417 // regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from mutant phenotype 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0042788 // polysomal ribosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 58.35 82.85 5.28 0.00 0.00 -4.45
52164_at 52164_at AA065185 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA065185:zm50e09.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-529096 /clone_end=3' /gb=AA065185 /gi=1559080 /ug=Hs.47008 /len=605 AA065185 chromosome 11 open reading frame 24 C11orf24 53838 NM_022338 /// XM_005274053 /// XM_005274054 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 49.72 95.86 5.28 0.00 0.00 -4.45
208051_s_at 208051_s_at NM_006451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006451.1 /DEF=Homo sapiens polyadenylate binding protein-interacting protein 1 (PAIP1), mRNA. /FEA=mRNA /GEN=PAIP1 /PROD=polyadenylate binding protein-interactingprotein 1 /DB_XREF=gi:5453845 /UG=Hs.109643 polyadenylate binding protein-interacting protein 1 /FL=gb:AF013758.1 gb:NM_006451.1 NM_006451 poly(A) binding protein interacting protein 1 PAIP1 10605 NM_006451 /// NM_182789 /// NM_183323 /// XM_005248230 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from direct assay /// 0048255 // mRNA stabilization // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008494 // translation activator activity // inferred from direct assay 54.55 63.42 5.28 0.00 0.00 -4.45
205521_at 205521_at BF511976 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF511976 /FEA=EST /DB_XREF=gi:11595274 /DB_XREF=est:UI-H-BI4-apu-a-03-0-UI.s1 /CLONE=IMAGE:3088420 /UG=Hs.266258 endonuclease G-like 1 /FL=gb:AB020523.1 gb:NM_005107.1 BF511976 endo/exonuclease (5'-3'), endonuclease G-like EXOG 9941 NM_001145464 /// NM_005107 /// XM_005265633 /// XM_005265635 /// XM_006713442 /// XM_006713443 /// XM_006713444 /// XM_006713445 /// XM_006713446 /// XM_006713447 0000737 // DNA catabolic process, endonucleolytic // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 42.93 24.26 5.28 0.00 0.00 -4.45
218269_at 218269_at NM_013235 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013235.1 /DEF=Homo sapiens putative ribonuclease III (RNASE3L), mRNA. /FEA=mRNA /GEN=RNASE3L /PROD=putative ribonuclease III /DB_XREF=gi:7106396 /UG=Hs.49163 putative ribonuclease III /FL=gb:AF116910.1 gb:NM_013235.1 gb:AF189011.1 NM_013235 drosha, ribonuclease type III DROSHA 29102 NM_001100412 /// NM_013235 /// XM_005248291 /// XM_005248292 /// XM_005248293 /// XM_005248294 0006396 // RNA processing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010586 // miRNA metabolic process // inferred from electronic annotation /// 0016075 // rRNA catabolic process // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031053 // primary miRNA processing // inferred from direct assay /// 0031053 // primary miRNA processing // inferred from mutant phenotype /// 0031054 // pre-miRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0050829 // defense response to Gram-negative bacterium // inferred from direct assay /// 0050830 // defense response to Gram-positive bacterium // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation 0001530 // lipopolysaccharide binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004521 // endoribonuclease activity // inferred from electronic annotation /// 0004525 // ribonuclease III activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 59.60 115.10 5.27 0.00 0.00 -4.45
211240_x_at 211240_x_at AB002382 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB002382.1 /DEF=Human mRNA for KIAA0384 gene, complete cds. /FEA=mRNA /GEN=KIAA0384 /DB_XREF=gi:2224708 /UG=Hs.166011 catenin (cadherin-associated protein), delta 1 /FL=gb:AB002382.1 AB002382 catenin (cadherin-associated protein), delta 1 /// TMX2-CTNND1 readthrough (NMD candidate) CTNND1 /// TMX2-CTNND1 1500 /// 100528016 NM_001085458 /// NM_001085459 /// NM_001085460 /// NM_001085461 /// NM_001085462 /// NM_001085463 /// NM_001085464 /// NM_001085465 /// NM_001085466 /// NM_001085467 /// NM_001085468 /// NM_001085469 /// NM_001206883 /// NM_001206884 /// NM_001206885 /// NM_001206886 /// NM_001206887 /// NM_001206888 /// NM_001206889 /// NM_001206890 /// NM_001206891 /// NM_001331 /// NR_037646 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0045216 // cell-cell junction organization // traceable author statement /// 0060690 // epithelial cell differentiation involved in salivary gland development // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005915 // zonula adherens // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation 114.10 286.60 5.27 0.00 0.00 -4.45
212196_at 212196_at AW242916 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW242916 /FEA=EST /DB_XREF=gi:6576686 /DB_XREF=est:xn27f03.x1 /CLONE=IMAGE:2694941 /UG=Hs.71968 Homo sapiens mRNA; cDNA DKFZp564F053 (from clone DKFZp564F053) AW242916 interleukin 6 signal transducer IL6ST 3572 NM_001190981 /// NM_002184 /// NM_175767 /// NR_120480 /// XM_005248496 0002675 // positive regulation of acute inflammatory response // inferred by curator /// 0002821 // positive regulation of adaptive immune response // inferred by curator /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // traceable author statement /// 0010613 // positive regulation of cardiac muscle hypertrophy // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0034097 // response to cytokine // inferred from direct assay /// 0038154 // interleukin-11-mediated signaling pathway // inferred from electronic annotation /// 0038165 // oncostatin-M-mediated signaling pathway // inferred from mutant phenotype /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from genetic interaction /// 0070102 // interleukin-6-mediated signaling pathway // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from direct assay /// 0070106 // interleukin-27-mediated signaling pathway // inferred from mutant phenotype /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005896 // interleukin-6 receptor complex // inferred from direct assay /// 0005900 // oncostatin-M receptor complex // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from direct assay 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from genetic interaction /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // inferred from genetic interaction /// 0004924 // oncostatin-M receptor activity // inferred from direct assay /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from physical interaction /// 0005138 // interleukin-6 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0019838 // growth factor binding // inferred from physical interaction /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0045509 // interleukin-27 receptor activity // inferred by curator -363.40 724.15 -5.27 0.00 0.00 -4.45
209773_s_at 209773_s_at BC001886 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001886.1 /DEF=Homo sapiens, ribonucleotide reductase M2 polypeptide, clone MGC:1551, mRNA, complete cds. /FEA=mRNA /PROD=ribonucleotide reductase M2 polypeptide /DB_XREF=gi:12804874 /UG=Hs.75319 ribonucleotide reductase M2 polypeptide /FL=gb:BC001886.1 BC001886 ribonucleotide reductase M2 RRM2 6241 NM_001034 /// NM_001165931 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 0009186 // deoxyribonucleoside diphosphate metabolic process // inferred from electronic annotation /// 0009262 // deoxyribonucleotide metabolic process // inferred from electronic annotation /// 0009263 // deoxyribonucleotide biosynthetic process // inferred from sequence or structural similarity /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0004748 // ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor // inferred from sequence or structural similarity /// 0004748 // ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 181.10 387.50 5.26 0.00 0.00 -4.45
219279_at 219279_at NM_017718 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017718.1 /DEF=Homo sapiens hypothetical protein FLJ20220 (FLJ20220), mRNA. /FEA=mRNA /GEN=FLJ20220 /PROD=hypothetical protein FLJ20220 /DB_XREF=gi:8923209 /UG=Hs.21126 hypothetical protein FLJ20220 /FL=gb:NM_017718.1 NM_017718 dedicator of cytokinesis 10 DOCK10 55619 NM_001290263 /// NM_014689 /// NM_017718 /// XM_005246672 /// XM_005246673 /// XM_005246674 /// XM_006712616 /// XM_006712617 /// XM_006712618 /// XM_006712619 /// XM_006712620 /// XM_006712621 /// XM_006712622 /// XM_006712623 /// XM_006712624 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from direct assay /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation -70.13 126.76 -5.26 0.00 0.00 -4.45
211929_at 211929_at AA527502 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA527502 /FEA=EST /DB_XREF=gi:2269571 /DB_XREF=est:ng41f10.s1 /CLONE=IMAGE:937387 /UG=Hs.249247 heterogeneous nuclear protein similar to rat helix destabilizing protein AA527502 heterogeneous nuclear ribonucleoprotein A3 HNRNPA3 220988 NM_194247 /// XM_005246380 /// XM_005246381 /// XM_005246382 /// XM_006712365 /// XR_427076 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 159.08 213.96 5.26 0.00 0.00 -4.45
203811_s_at 203811_s_at NM_007034 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007034.2 /DEF=Homo sapiens DnaJ-like heat shock protein 40 (HLJ1), mRNA. /FEA=mRNA /GEN=HLJ1 /PROD=DnaJ-like heat shock protein 40 /DB_XREF=gi:6631084 /UG=Hs.41693 DnaJ (Hsp40) homolog, subfamily B, member 4 /FL=gb:U40992.2 gb:NM_007034.2 NM_007034 DnaJ (Hsp40) homolog, subfamily B, member 4 DNAJB4 11080 NM_007034 /// XM_005270397 /// XM_006710308 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0009408 // response to heat // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from physical interaction 131.83 185.66 5.25 0.00 0.00 -4.45
201904_s_at 201904_s_at BF031714 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF031714 /FEA=EST /DB_XREF=gi:10739426 /DB_XREF=est:601558023F1 /CLONE=IMAGE:3827909 /UG=Hs.147189 HYA22 protein /FL=gb:D88153.1 gb:NM_005808.1 BF031714 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like CTDSPL 10217 NM_001008392 /// NM_005808 /// XM_006712922 /// XM_006712923 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 60.25 43.42 5.25 0.00 0.00 -4.45
202733_at 202733_at NM_004199 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004199.1 /DEF=Homo sapiens procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II (P4HA2), mRNA. /FEA=mRNA /GEN=P4HA2 /PROD=procollagen-proline, 2-oxoglutarate4-dioxygenase (proline 4-hydroxylase), alpha polypeptideII /DB_XREF=gi:4758867 /UG=Hs.3622 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II /FL=gb:U90441.1 gb:NM_004199.1 NM_004199 uncharacterized LOC101927705 /// prolyl 4-hydroxylase, alpha polypeptide II LOC101927705 /// P4HA2 8974 /// 101927705 NM_001017973 /// NM_001017974 /// NM_001142598 /// NM_001142599 /// NM_004199 /// XM_005272116 /// XM_005272117 /// XM_005272118 /// XM_005272119 /// XM_005272120 /// XM_005272122 /// XM_006714728 /// XM_006714729 /// XM_006714730 /// XM_006714731 /// XR_246585 /// XR_249830 /// XR_251870 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from electronic annotation /// 0019511 // peptidyl-proline hydroxylation // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -120.40 230.55 -5.25 0.00 0.00 -4.45
213010_at 213010_at AI088622 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI088622 /FEA=EST /DB_XREF=gi:3427681 /DB_XREF=est:qb14f06.x1 /CLONE=IMAGE:1696259 /UG=Hs.85181 v-raf-1 murine leukemia viral oncogene homolog 1 AI088622 protein kinase C, delta binding protein PRKCDBP 112464 NM_145040 0005901 // caveola // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 56.25 254.50 5.25 0.00 0.00 -4.45
201924_at 201924_at NM_005935 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005935.1 /DEF=Homo sapiens myeloidlymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog); translocated to, 2 (MLLT2), mRNA. /FEA=mRNA /GEN=MLLT2 /PROD=myeloidlymphoid or mixed-lineage leukemia(trithorax (Drosophila) homolog); translocated to, 2 /DB_XREF=gi:5174572 /UG=Hs.114765 myeloidlymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog); translocated to, 2 /FL=gb:L13773.1 gb:L25050.1 gb:NM_005935.1 NM_005935 AF4/FMR2 family, member 1 AFF1 4299 NM_001166693 /// NM_005935 /// XM_005263007 /// XM_005263008 /// XM_005263009 /// XM_005263010 /// XM_005263011 /// XM_005263012 /// XM_005263013 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 217.55 216.57 5.25 0.00 0.00 -4.45
201037_at 201037_at NM_002627 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002627.1 /DEF=Homo sapiens phosphofructokinase, platelet (PFKP), mRNA. /FEA=mRNA /GEN=PFKP /PROD=phosphofructokinase, platelet /DB_XREF=gi:11321600 /UG=Hs.99910 phosphofructokinase, platelet /FL=gb:NM_002627.1 gb:BC002536.1 gb:M64784.1 gb:D25328.1 NM_002627 phosphofructokinase, platelet PFKP 5214 NM_001242339 /// NM_002627 /// XM_005252465 /// XM_005252466 /// XM_005252467 /// XM_006717449 0005975 // carbohydrate metabolic process // traceable author statement /// 0006002 // fructose 6-phosphate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // inferred from sequence or structural similarity /// 0046835 // carbohydrate phosphorylation // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005945 // 6-phosphofructokinase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from sequence or structural similarity /// 0003872 // 6-phosphofructokinase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -287.78 1265.74 -5.25 0.00 0.00 -4.45
202038_at 202038_at NM_004788 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004788.1 /DEF=Homo sapiens ubiquitination factor E4A (homologous to yeast UFD2) (UBE4A), mRNA. /FEA=mRNA /GEN=UBE4A /PROD=ubiquitination factor E4A (homologous to yeastUFD2) /DB_XREF=gi:4759287 /UG=Hs.75275 ubiquitination factor E4A (homologous to yeast UFD2) /FL=gb:D50916.1 gb:NM_004788.1 NM_004788 ubiquitination factor E4A UBE4A 9354 NM_001204077 /// NM_004788 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation 90.80 266.00 5.25 0.00 0.00 -4.45
212614_at 212614_at BG285011 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG285011 /FEA=EST /DB_XREF=gi:13036541 /DB_XREF=est:602409278F1 /CLONE=IMAGE:4538275 /UG=Hs.12702 Homo sapiens mRNA; cDNA DKFZp586N012 (from clone DKFZp586N012) BG285011 AT rich interactive domain 5B (MRF1-like) ARID5B 84159 NM_001244638 /// NM_032199 0001822 // kidney development // inferred from electronic annotation /// 0001889 // liver development // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // traceable author statement /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048468 // cell development // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060021 // palate development // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060612 // adipose tissue development // inferred from sequence or structural similarity /// 0060613 // fat pad development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay -48.63 75.81 -5.24 0.00 0.00 -4.45
201198_s_at 201198_s_at AI860431 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI860431 /FEA=EST /DB_XREF=gi:5514047 /DB_XREF=est:wl13h07.x1 /CLONE=IMAGE:2424829 /UG=Hs.3887 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 /FL=gb:D44466.1 gb:NM_002807.1 AI860431 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 PSMD1 5707 NM_001191037 /// NM_002807 /// NR_034059 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation 96.32 455.69 5.24 0.00 0.00 -4.45
214771_x_at 214771_x_at AK025604 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025604.1 /DEF=Homo sapiens cDNA: FLJ21951 fis, clone HEP04968. /FEA=mRNA /DB_XREF=gi:10438172 /UG=Hs.84883 KIAA0864 protein AK025604 myosin phosphatase Rho interacting protein MPRIP 23164 NM_015134 /// NM_201274 /// XM_005256563 /// XM_005256564 /// XM_006721487 /// XM_006721488 /// XM_006721489 /// XM_006721490 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation -101.63 524.89 -5.24 0.00 0.00 -4.45
201089_at 201089_at NM_001693 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001693.1 /DEF=Homo sapiens ATPase, H+ transporting, lysosomal (vacuolar proton pump), beta polypeptide, 5658kD, isoform 2 (ATP6B2), mRNA. /FEA=mRNA /GEN=ATP6B2 /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump), beta polypeptide, 5658kD, isoform 2 /DB_XREF=gi:4502310 /UG=Hs.1697 ATPase, H+ transporting, lysosomal (vacuolar proton pump), beta polypeptide, 5658kD, isoform 2 /FL=gb:BC003100.1 gb:NM_001693.1 gb:L35249.1 NM_001693 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 ATP6V1B2 526 NM_001693 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0033572 // transferrin transport // traceable author statement /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005902 // microvillus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005524 // ATP binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // traceable author statement -69.75 347.77 -5.23 0.00 0.00 -4.45
218007_s_at 218007_s_at NM_015920 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015920.1 /DEF=Homo sapiens 40S ribosomal protein S27 isoform (LOC51065), mRNA. /FEA=mRNA /GEN=LOC51065 /PROD=40S ribosomal protein S27 isoform /DB_XREF=gi:7705705 /UG=Hs.108957 40S ribosomal protein S27 isoform /FL=gb:BC003667.1 gb:AF070668.1 gb:NM_015920.1 NM_015920 ribosomal protein S27-like RPS27L 51065 NM_015920 0006281 // DNA repair // inferred from mutant phenotype /// 0006412 // translation // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0031571 // mitotic G1 DNA damage checkpoint // inferred from mutant phenotype /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008494 // translation activator activity // inferred from direct assay /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 299.90 1505.53 5.23 0.00 0.00 -4.45
215773_x_at 215773_x_at AJ236912 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ236912.1 /DEF=Homo sapiens mRNA for poly-(ADP-ribose) polymerase II. /FEA=mRNA /GEN=PARP2 /PROD=poly-(ADP-ribose) polymerase II /DB_XREF=gi:6688129 /UG=Hs.24284 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 2 AJ236912 poly (ADP-ribose) polymerase 2 PARP2 10038 NM_001042618 /// NM_005484 /// XM_005267247 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0097191 // extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 54.55 175.97 5.23 0.00 0.00 -4.45
212103_at 212103_at BG403834 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG403834 /FEA=EST /DB_XREF=gi:13297282 /DB_XREF=est:602419675F1 /CLONE=IMAGE:4526611 /UG=Hs.301553 karyopherin alpha 6 (importin alpha 7) /FL=gb:AF060543.1 gb:NM_012316.1 BG403834 karyopherin alpha 6 (importin alpha 7) KPNA6 23633 NM_012316 /// XM_005270711 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 77.22 105.56 5.23 0.00 0.00 -4.45
221847_at 221847_at BF665706 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF665706 /FEA=EST /DB_XREF=gi:11939601 /DB_XREF=est:602124033F1 /CLONE=IMAGE:4280744 /UG=Hs.45033 lacrimal proline rich protein BF665706 chromosome X open reading frame 69-like LOC100129361 100129361 NM_001271592 /// NR_036583 68.05 102.22 5.23 0.00 0.00 -4.45
218973_at 218973_at NM_024580 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024580.1 /DEF=Homo sapiens hypothetical protein FLJ13119 (FLJ13119), mRNA. /FEA=mRNA /GEN=FLJ13119 /PROD=hypothetical protein FLJ13119 /DB_XREF=gi:13375759 /UG=Hs.19348 hypothetical protein FLJ13119 /FL=gb:NM_024580.1 NM_024580 elongation factor Tu GTP binding domain containing 1 EFTUD1 79631 NM_001040610 /// NM_024580 0006184 // GTP catabolic process // inferred from direct assay /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042256 // mature ribosome assembly // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from mutant phenotype -71.87 172.74 -5.23 0.00 0.00 -4.45
218096_at 218096_at NM_018361 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018361.1 /DEF=Homo sapiens hypothetical protein FLJ11210 (FLJ11210), mRNA. /FEA=mRNA /GEN=FLJ11210 /PROD=hypothetical protein FLJ11210 /DB_XREF=gi:8922941 /UG=Hs.27842 hypothetical protein FLJ11210 /FL=gb:NM_018361.1 NM_018361 1-acylglycerol-3-phosphate O-acyltransferase 5 AGPAT5 55326 NM_018361 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006639 // acylglycerol metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006654 // phosphatidic acid biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // non-traceable author statement /// 0016024 // CDP-diacylglycerol biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 61.25 320.75 5.22 0.00 0.00 -4.45
218546_at 218546_at NM_024709 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024709.1 /DEF=Homo sapiens hypothetical protein FLJ14146 (FLJ14146), mRNA. /FEA=mRNA /GEN=FLJ14146 /PROD=hypothetical protein FLJ14146 /DB_XREF=gi:13376004 /UG=Hs.103395 hypothetical protein FLJ14146 /FL=gb:NM_024709.1 NM_024709 chromosome 1 open reading frame 115 C1orf115 79762 NM_024709 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 95.98 106.14 5.21 0.00 0.00 -4.45
207173_x_at 207173_x_at D21254 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D21254.1 /DEF=Human mRNA for OB-cadherin-1, complete cds. /FEA=mRNA /GEN=osf-4 /PROD=OB-cadherin-1 /DB_XREF=gi:575577 /UG=Hs.75929 cadherin 11, type 2, OB-cadherin (osteoblast) /FL=gb:NM_001797.1 gb:L34056.1 gb:D21254.1 D21254 cadherin 11, type 2, OB-cadherin (osteoblast) CDH11 1009 NM_001797 /// XM_005255761 /// XM_005255762 /// XM_005255763 /// XM_005255764 /// XM_005255766 /// XM_005255767 0001501 // skeletal system development // traceable author statement /// 0001503 // ossification // non-traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // non-traceable author statement /// 0021957 // corticospinal tract morphogenesis // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0045216 // cell-cell junction organization // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -86.23 254.41 -5.21 0.00 0.00 -4.45
212667_at 212667_at AL575922 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL575922 /FEA=EST /DB_XREF=gi:12937561 /DB_XREF=est:AL575922 /CLONE=CS0DI067YN03 (3 prime) /UG=Hs.111779 secreted protein, acidic, cysteine-rich (osteonectin) AL575922 secreted protein, acidic, cysteine-rich (osteonectin) SPARC 6678 NM_003118 0001503 // ossification // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009629 // response to gravity // inferred from electronic annotation /// 0010288 // response to lead ion // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033591 // response to L-ascorbic acid // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0060348 // bone development // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation /// 0071682 // endocytic vesicle lumen // traceable author statement 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation 126.67 633.79 5.21 0.00 0.00 -4.45
217959_s_at 217959_s_at NM_016146 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016146.1 /DEF=Homo sapiens PTD009 protein (PTD009), mRNA. /FEA=mRNA /GEN=PTD009 /PROD=PTD009 protein /DB_XREF=gi:7706666 /UG=Hs.279901 PTD009 protein /FL=gb:AF151862.1 gb:AF078862.1 gb:AF161520.1 gb:NM_016146.1 NM_016146 microRNA 3656 /// trafficking protein particle complex 4 MIR3656 /// TRAPPC4 51399 /// 100500840 NM_016146 /// NR_037429 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from sequence or structural similarity /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0030008 // TRAPP complex // inferred from electronic annotation /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 78.80 210.95 5.20 0.00 0.01 -4.45
208093_s_at 208093_s_at NM_030808 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030808.1 /DEF=Homo sapiens LIS1-interacting protein NUDEL; endooligopeptidase A (NUDEL), mRNA. /FEA=mRNA /GEN=NUDEL /PROD=LIS1-interacting protein NUDEL;endooligopeptidase A /DB_XREF=gi:13540599 /FL=gb:NM_030808.1 NM_030808 nudE neurodevelopment protein 1-like 1 NDEL1 81565 NM_001025579 /// NM_030808 /// XM_005256806 /// XM_006721580 /// XM_006721581 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0001764 // neuron migration // inferred from electronic annotation /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0010975 // regulation of neuron projection development // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // inferred from electronic annotation /// 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032864 // activation of Cdc42 GTPase activity // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0047496 // vesicle transport along microtubule // inferred from electronic annotation /// 0048680 // positive regulation of axon regeneration // inferred from electronic annotation /// 0051081 // nuclear envelope disassembly // inferred from electronic annotation /// 0051642 // centrosome localization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0060053 // neurofilament cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0070012 // oligopeptidase activity // inferred from electronic annotation 61.75 195.53 5.20 0.00 0.01 -4.45
201449_at 201449_at AL567227 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL567227 /FEA=EST /DB_XREF=gi:12920378 /DB_XREF=est:AL567227 /CLONE=CS0DF027YA11 (3 prime) /UG=Hs.239489 TIA1 cytotoxic granule-associated RNA-binding protein /FL=gb:NM_022037.1 gb:M77142.1 AL567227 TIA1 cytotoxic granule-associated RNA binding protein TIA1 7072 NM_022037 /// NM_022173 /// XM_005264524 /// XM_005264525 /// XM_005264526 /// XM_005264527 /// XM_005264528 /// XM_005264530 /// XM_005264531 /// XM_005264532 /// XM_005264533 /// XR_244953 /// XR_244954 /// XR_244955 0006915 // apoptotic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0042036 // negative regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0048024 // regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0097165 // nuclear stress granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // traceable author statement /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 46.55 60.07 5.20 0.00 0.01 -4.45
204312_x_at 204312_x_at AI655737 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI655737 /FEA=EST /DB_XREF=gi:4739716 /DB_XREF=est:tt14h05.x1 /CLONE=IMAGE:2240793 /UG=Hs.79194 cAMP responsive element binding protein 1 /FL=gb:M27691.1 gb:NM_004379.1 AI655737 cAMP responsive element binding protein 1 CREB1 1385 NM_004379 /// NM_134442 /// XR_241289 /// XR_241290 /// XR_241292 /// XR_427071 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007595 // lactation // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0008361 // regulation of cell size // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010033 // response to organic substance // inferred from direct assay /// 0010944 // negative regulation of transcription by competitive promoter binding // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0033363 // secretory granule organization // inferred from electronic annotation /// 0033762 // response to glucagon // inferred from sequence or structural similarity /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045600 // positive regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046889 // positive regulation of lipid biosynthetic process // inferred from sequence or structural similarity /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0060428 // lung epithelium development // inferred from electronic annotation /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060509 // Type I pneumocyte differentiation // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred by curator /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0035497 // cAMP response element binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -47.32 91.79 -5.19 0.00 0.01 -4.45
219008_at 219008_at NM_021925 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021925.1 /DEF=Homo sapiens hypothetical protein FLJ21820 (FLJ21820), mRNA. /FEA=mRNA /GEN=FLJ21820 /PROD=hypothetical protein FLJ21820 /DB_XREF=gi:11345457 /UG=Hs.63300 hypothetical protein FLJ21820 /FL=gb:NM_021925.1 NM_021925 chromosome 2 open reading frame 43 C2orf43 60526 NM_001282719 /// NM_001282720 /// NM_001282721 /// NM_001282722 /// NM_001282723 /// NM_001282724 /// NM_021925 /// NR_104233 /// XR_426990 /// XR_426991 /// XR_426992 42.40 46.80 5.19 0.00 0.01 -4.45
210524_x_at 210524_x_at AF078844 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF078844.1 /DEF=Homo sapiens hqp0376 protein mRNA, complete cds. /FEA=mRNA /PROD=hqp0376 protein /DB_XREF=gi:6683748 /UG=Hs.8765 RNA helicase-related protein /FL=gb:AF078844.1 AF078844 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -97.30 203.70 -5.19 0.00 0.01 -4.45
201630_s_at 201630_s_at NM_004300 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004300.1 /DEF=Homo sapiens acid phosphatase 1, soluble (ACP1), transcript variant a, mRNA. /FEA=mRNA /GEN=ACP1 /PROD=acid phosphatase 1 isoform a /DB_XREF=gi:4757713 /UG=Hs.75393 acid phosphatase 1, soluble /FL=gb:M83653.1 gb:NM_004300.1 NM_004300 acid phosphatase 1, soluble ACP1 52 NM_001040649 /// NM_004300 /// NM_007099 /// NM_177554 /// NR_024080 /// XR_426957 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 64.72 293.59 5.19 0.00 0.01 -4.45
213144_at 213144_at AI074611 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI074611 /FEA=EST /DB_XREF=gi:3401255 /DB_XREF=est:oy99c09.x1 /CLONE=IMAGE:1673968 /UG=Hs.100651 golgi SNAP receptor complex member 2 AI074611 golgi SNAP receptor complex member 2 GOSR2 9570 NM_001012511 /// NM_004287 /// NM_054022 /// XM_005257843 /// XM_005257844 /// XM_005257845 /// XM_006722188 /// XM_006722189 /// XM_006722190 /// XM_006722191 /// XM_006722192 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0061025 // membrane fusion // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005215 // transporter activity // traceable author statement 45.50 67.58 5.18 0.00 0.01 -4.45
207573_x_at 207573_x_at NM_006476 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006476.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F1F0, subunit g (ATP5JG), mRNA. /FEA=mRNA /GEN=ATP5JG /PROD=ATP synthase, H+ transporting, mitochondrialF1F0, subunit g /DB_XREF=gi:5453560 /UG=Hs.107476 ATP synthase, H+ transporting, mitochondrial F1F0, subunit g /FL=gb:AF092124.1 gb:NM_006476.1 NM_006476 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G ATP5L 10632 NM_006476 /// NR_033759 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator 155.60 937.98 5.18 0.00 0.01 -4.45
218397_at 218397_at NM_018062 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018062.1 /DEF=Homo sapiens hypothetical protein FLJ10335 (FLJ10335), mRNA. /FEA=mRNA /GEN=FLJ10335 /PROD=hypothetical protein FLJ10335 /DB_XREF=gi:8922359 /UG=Hs.279841 hypothetical protein FLJ10335 /FL=gb:NM_018062.1 NM_018062 Fanconi anemia, complementation group L FANCL 55120 NM_001114636 /// NM_018062 /// XM_005264395 /// XM_005264397 /// XM_006712038 /// XR_426986 0006281 // DNA repair // inferred from mutant phenotype /// 0006281 // DNA repair // traceable author statement /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0007276 // gamete generation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043240 // Fanconi anaemia nuclear complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 46.65 45.52 5.18 0.00 0.01 -4.45
200692_s_at 200692_s_at NM_004134 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004134.1 /DEF=Homo sapiens heat shock 70kD protein 9B (mortalin-2) (HSPA9B), mRNA. /FEA=mRNA /GEN=HSPA9B /PROD=heat shock 70kD protein 9B (mortalin-2) /DB_XREF=gi:4758569 /UG=Hs.3069 heat shock 70kD protein 9B (mortalin-2) /FL=gb:BC000478.1 gb:L15189.1 gb:NM_004134.1 NM_004134 heat shock 70kDa protein 9 (mortalin) HSPA9 3313 NM_004134 0000902 // cell morphogenesis // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement -179.95 388.98 -5.18 0.00 0.01 -4.45
203013_at 203013_at NM_007265 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007265.1 /DEF=Homo sapiens suppressor of S. cerevisiae gcr2 (HSGT1), mRNA. /FEA=mRNA /GEN=HSGT1 /PROD=suppressor of S. cerevisiae gcr2 /DB_XREF=gi:6005783 /UG=Hs.19673 suppressor of S. cerevisiae gcr2 /FL=gb:BC000721.1 gb:D88208.1 gb:NM_007265.1 NM_007265 ecdysoneless homolog (Drosophila) ECD 11319 NM_001135752 /// NM_001135753 /// NM_007265 /// NR_024203 0006110 // regulation of glycolytic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 2000045 // regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 60.88 115.94 5.17 0.00 0.01 -4.45
201894_s_at 201894_s_at NM_001920 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001920.1 /DEF=Homo sapiens decorin (DCN), mRNA. /FEA=mRNA /GEN=DCN /PROD=decorin /DB_XREF=gi:4503270 /UG=Hs.76152 decorin /FL=gb:M14219.1 gb:NM_001920.1 gb:AF138300.1 gb:AF138304.1 NM_001920 signal sequence receptor, alpha SSR1 6745 NM_001292008 /// NM_003144 /// NR_120448 0001822 // kidney development // inferred from electronic annotation /// 0001890 // placenta development // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009887 // organ morphogenesis // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0030207 // chondroitin sulfate catabolic process // traceable author statement /// 0030208 // dermatan sulfate biosynthetic process // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005589 // collagen type VI trimer // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005796 // Golgi lumen // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0043202 // lysosomal lumen // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation 85.22 352.96 5.17 0.00 0.01 -4.45
218536_at 218536_at AF052167 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF052167.1 /DEF=Homo sapiens clone 24749 and 24750 mRNA sequences. /FEA=mRNA /DB_XREF=gi:3360478 /UG=Hs.30057 transporter similar to yeast MRS2 /FL=gb:NM_020662.1 gb:AF288288.1 AF052167 MRS2 magnesium transporter MRS2 57380 NM_001286264 /// NM_001286265 /// NM_001286266 /// NM_020662 /// NR_104423 /// XM_005249242 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015693 // magnesium ion transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015095 // magnesium ion transmembrane transporter activity // inferred from electronic annotation 46.55 52.57 5.17 0.00 0.01 -4.45
212301_at 212301_at D87440 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D87440.1 /DEF=Human mRNA for KIAA0252 gene, partial cds. /FEA=mRNA /GEN=KIAA0252 /DB_XREF=gi:1665770 /UG=Hs.83419 KIAA0252 protein D87440 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) RTF1 23168 NM_015138 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001711 // endodermal cell fate commitment // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016570 // histone modification // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from direct assay /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from electronic annotation /// 0080182 // histone H3-K4 trimethylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 53.38 162.01 5.17 0.00 0.01 -4.45
209652_s_at 209652_s_at BC001422 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001422.1 /DEF=Homo sapiens, Similar to placental growth factor, vascular endothelial growth factor-related protein, clone MGC:1683, mRNA, complete cds. /FEA=mRNA /PROD=Similar to placental growth factor, vascularendothelial growth factor-related protein /DB_XREF=gi:12802997 /UG=Hs.2894 placental growth factor, vascular endothelial growth factor-related protein /FL=gb:BC001422.1 gb:S72960.1 BC001422 placental growth factor PGF 5228 NM_001207012 /// NM_001293643 /// NM_002632 /// XM_005267761 0001525 // angiogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from mutant phenotype /// 0008201 // heparin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 167.22 485.76 5.17 0.00 0.01 -4.45
214812_s_at 214812_s_at D80006 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D80006.1 /DEF=Human mRNA for KIAA0184 gene, partial cds. /FEA=mRNA /GEN=KIAA0184 /DB_XREF=gi:1136427 /UG=Hs.322903 KIAA0184 protein D80006 MOB kinase activator 1A MOB1A 55233 NM_018221 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0035329 // hippo signaling // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 104.98 241.29 5.17 0.00 0.01 -4.45
201071_x_at 201071_x_at NM_012433 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012433.1 /DEF=Homo sapiens splicing factor 3b, subunit 1, 155kD (SF3B1), mRNA. /FEA=mRNA /GEN=SF3B1 /PROD=splicing factor 3b, subunit 1, 155kD /DB_XREF=gi:6912653 /UG=Hs.13453 splicing factor 3b, subunit 1, 155kD /FL=gb:AF054284.1 gb:NM_012433.1 NM_012433 splicing factor 3b, subunit 1, 155kDa SF3B1 23451 NM_001005526 /// NM_012433 /// XM_005246428 /// XR_241300 /// XR_241301 /// XR_241302 0000375 // RNA splicing, via transesterification reactions // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -159.50 967.62 -5.16 0.00 0.01 -4.45
202765_s_at 202765_s_at AI264196 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI264196 /FEA=EST /DB_XREF=gi:3872399 /DB_XREF=est:qi20h04.x1 /CLONE=IMAGE:1857079 /UG=Hs.750 fibrillin 1 (Marfan syndrome) /FL=gb:L13923.1 gb:NM_000138.1 AI264196 fibrillin 1 FBN1 2200 NM_000138 0001501 // skeletal system development // inferred from mutant phenotype /// 0001822 // kidney development // inferred from electronic annotation /// 0007507 // heart development // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0035582 // sequestering of BMP in extracellular matrix // inferred from sequence or structural similarity /// 0035583 // sequestering of TGFbeta in extracellular matrix // inferred from sequence or structural similarity 0001527 // microfibril // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -142.53 175.09 -5.16 0.00 0.01 -4.45
201412_at 201412_at NM_014045 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014045.1 /DEF=Homo sapiens DKFZP564C1940 protein (DKFZP564C1940), mRNA. /FEA=mRNA /GEN=DKFZP564C1940 /PROD=DKFZP564C1940 protein /DB_XREF=gi:13027587 /UG=Hs.3804 DKFZP564C1940 protein /FL=gb:BC000424.1 gb:NM_014045.1 gb:AF131760.1 NM_014045 low density lipoprotein receptor-related protein 10 LRP10 26020 NM_014045 /// XM_005267510 0006897 // endocytosis // inferred from electronic annotation 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 91.90 437.30 5.16 0.00 0.01 -4.45
218140_x_at 218140_x_at NM_021203 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021203.1 /DEF=Homo sapiens APMCF1 protein (APMCF1), mRNA. /FEA=mRNA /GEN=APMCF1 /PROD=APMCF1 protein /DB_XREF=gi:10864014 /UG=Hs.12152 APMCF1 protein /FL=gb:NM_021203.1 gb:AF141882.1 NM_021203 signal recognition particle receptor, B subunit SRPRB 58477 NM_021203 0006412 // translation // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from electronic annotation 110.10 249.38 5.15 0.00 0.01 -4.45
218882_s_at 218882_s_at NM_006784 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006784.1 /DEF=Homo sapiens WD repeat domain 3 (WDR3), mRNA. /FEA=mRNA /GEN=WDR3 /PROD=WD repeat-containing protein 3 /DB_XREF=gi:5803220 /UG=Hs.33085 WD repeat domain 3 /FL=gb:AF083217.1 gb:NM_006784.1 NM_006784 WD repeat domain 3 WDR3 10885 NM_006784 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0036126 // sperm flagellum // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 63.27 109.69 5.15 0.00 0.01 -4.45
203427_at 203427_at NM_014034 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014034.1 /DEF=Homo sapiens DKFZP547E2110 protein (DKFZP547E2110), mRNA. /FEA=mRNA /GEN=DKFZP547E2110 /PROD=DKFZP547E2110 protein /DB_XREF=gi:7661591 /UG=Hs.108110 DKFZP547E2110 protein /FL=gb:AL050261.1 gb:AF151856.1 gb:AF161495.1 gb:NM_014034.1 gb:AB028628.1 NM_014034 anti-silencing function 1A histone chaperone ASF1A 25842 NM_014034 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0006281 // DNA repair // inferred from direct assay /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031936 // negative regulation of chromatin silencing // non-traceable author statement /// 0042692 // muscle cell differentiation // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0043234 // protein complex // inferred from direct assay 0003682 // chromatin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay 51.73 93.41 5.15 0.00 0.01 -4.45
219137_s_at 219137_s_at NM_020194 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020194.1 /DEF=Homo sapiens GL004 protein (GL004), mRNA. /FEA=mRNA /GEN=GL004 /PROD=GL004 protein /DB_XREF=gi:9910247 /UG=Hs.7045 GL004 protein /FL=gb:AF226049.1 gb:NM_020194.1 NM_020194 mitochondrial fission factor MFF 56947 NM_001277061 /// NM_001277062 /// NM_001277063 /// NM_001277064 /// NM_001277065 /// NM_001277066 /// NM_001277067 /// NM_001277068 /// NM_020194 /// NR_102266 /// XM_005246681 /// XM_005246682 /// XM_005246683 /// XM_005246684 /// XM_005246685 /// XM_005246686 /// XM_005246687 /// XM_005246688 /// XM_006712637 /// XM_006712638 /// XM_006712639 0000266 // mitochondrial fission // inferred from sequence or structural similarity /// 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0006626 // protein targeting to mitochondrion // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // inferred from mutant phenotype /// 0010821 // regulation of mitochondrion organization // inferred from mutant phenotype /// 0016559 // peroxisome fission // inferred from mutant phenotype /// 0043653 // mitochondrial fragmentation involved in apoptotic process // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay /// 0070584 // mitochondrion morphogenesis // inferred from mutant phenotype /// 0090141 // positive regulation of mitochondrial fission // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0090314 // positive regulation of protein targeting to membrane // inferred from direct assay /// 1900063 // regulation of peroxisome organization // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032592 // integral component of mitochondrial membrane // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay 45.35 56.80 5.15 0.00 0.01 -4.45
218088_s_at 218088_s_at NM_022157 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022157.1 /DEF=Homo sapiens Rag C protein (GTR2), mRNA. /FEA=mRNA /GEN=GTR2 /PROD=Rag C protein /DB_XREF=gi:11995471 /UG=Hs.110950 Rag C protein /FL=gb:AF272035.1 gb:NM_022157.1 gb:AF323609.1 NM_022157 Ras-related GTP binding C RRAGC 64121 NM_001271851 /// NM_022157 0006184 // GTP catabolic process // inferred from direct assay /// 0006351 // transcription, DNA-templated // non-traceable author statement /// 0006915 // apoptotic process // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0008380 // RNA splicing // non-traceable author statement /// 0016049 // cell growth // non-traceable author statement /// 0034613 // cellular protein localization // inferred from sequence or structural similarity /// 0071230 // cellular response to amino acid stimulus // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // non-traceable author statement /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction -160.93 353.69 -5.15 0.00 0.01 -4.45
202568_s_at 202568_s_at AI745639 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI745639 /FEA=EST /DB_XREF=gi:5113927 /DB_XREF=est:tr24b01.x1 /CLONE=IMAGE:2219209 /UG=Hs.172766 MAPmicrotubule affinity-regulating kinase 3 /FL=gb:M80359.1 gb:NM_002376.1 AI745639 MAP/microtubule affinity-regulating kinase 3 MARK3 4140 NM_001128918 /// NM_001128919 /// NM_001128920 /// NM_001128921 /// NM_002376 /// XM_005267641 /// XM_005267642 /// XM_005267643 /// XM_006720146 /// XM_006720147 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -52.08 116.19 -5.14 0.00 0.01 -4.45
218023_s_at 218023_s_at NM_016605 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016605.1 /DEF=Homo sapiens putative nuclear protein (LOC51307), mRNA. /FEA=mRNA /GEN=LOC51307 /PROD=putative nuclear protein /DB_XREF=gi:7706138 /UG=Hs.102469 putative nuclear protein /FL=gb:AF251040.1 gb:NM_016605.1 NM_016605 family with sequence similarity 53, member C FAM53C 51307 NM_001135647 /// NM_016605 77.35 235.82 5.14 0.00 0.01 -4.45
218653_at 218653_at NM_014252 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014252.1 /DEF=Homo sapiens solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (SLC25A15), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=SLC25A15 /PROD=ornithine transporter 1(hyperornithinemia-hyperammonemia-homocitrullinuria) /DB_XREF=gi:7657584 /UG=Hs.78457 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 /FL=gb:BC002702.1 gb:AF112968.1 gb:NM_014252.1 NM_014252 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 SLC25A15 10166 NM_014252 0000050 // urea cycle // traceable author statement /// 0000066 // mitochondrial ornithine transport // traceable author statement /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000064 // L-ornithine transmembrane transporter activity // traceable author statement 56.62 97.26 5.14 0.00 0.01 -4.45
208919_s_at 208919_s_at BC001709 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001709.1 /DEF=Homo sapiens, Similar to hypothetical protein FLJ13052, clone MGC:1900, mRNA, complete cds. /FEA=mRNA /PROD=Similar to hypothetical protein FLJ13052 /DB_XREF=gi:12804578 /UG=Hs.220324 hypothetical protein FLJ13052 /FL=gb:BC001709.1 BC001709 NAD kinase NADK 65220 NM_001198993 /// NM_001198994 /// NM_001198995 /// NM_023018 /// XM_005244778 /// XM_006710837 /// XM_006710838 /// XM_006710839 /// XR_241040 0006741 // NADP biosynthetic process // inferred from electronic annotation /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // non-traceable author statement /// 0019674 // NAD metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046034 // ATP metabolic process // non-traceable author statement 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003951 // NAD+ kinase activity // inferred from direct assay /// 0003951 // NAD+ kinase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 109.25 178.20 5.14 0.00 0.01 -4.45
210101_x_at 210101_x_at AF257318 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF257318.1 /DEF=Homo sapiens SH3-containing protein SH3GLB1 mRNA, complete cds. /FEA=mRNA /PROD=SH3-containing protein SH3GLB1 /DB_XREF=gi:8896091 /UG=Hs.136309 SH3-containing protein SH3GLB1 /FL=gb:AF350371.1 gb:AF151819.1 gb:NM_016009.1 gb:AF257318.1 AF257318 SH3-domain GRB2-like endophilin B1 SH3GLB1 51100 NM_001206651 /// NM_001206652 /// NM_001206653 /// NM_016009 /// XM_006710672 /// XM_006710673 0006654 // phosphatidic acid biosynthetic process // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0051084 // 'de novo' posttranslational protein folding // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from direct assay /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005504 // fatty acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0042171 // lysophosphatidic acid acyltransferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction -268.33 798.61 -5.14 0.00 0.01 -4.45
218582_at 218582_at NM_017824 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017824.1 /DEF=Homo sapiens hypothetical protein FLJ20445 (FLJ20445), mRNA. /FEA=mRNA /GEN=FLJ20445 /PROD=hypothetical protein FLJ20445 /DB_XREF=gi:8923414 /UG=Hs.10340 hypothetical protein FLJ20445 /FL=gb:NM_017824.1 NM_017824 membrane-associated ring finger (C3HC4) 5 MARCH5 54708 NM_017824 /// XM_005269923 0000209 // protein polyubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0070585 // protein localization to mitochondrion // inferred from mutant phenotype /// 0090140 // regulation of mitochondrial fission // inferred from mutant phenotype /// 0090141 // positive regulation of mitochondrial fission // inferred from mutant phenotype /// 0090344 // negative regulation of cell aging // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from physical interaction -86.37 196.09 -5.14 0.00 0.01 -4.45
209147_s_at 209147_s_at AB000888 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB000888.1 /DEF=Homo sapiens mRNA for phosphatidic acid phosphatase 2a, complete cds. /FEA=mRNA /PROD=phosphatidic acid phosphatase 2a /DB_XREF=gi:2467297 /UG=Hs.41569 phosphatidic acid phosphatase type 2A /FL=gb:AB000888.1 gb:AF017116.1 gb:AF014402.1 gb:NM_003711.1 AB000888 phosphatidic acid phosphatase type 2A PPAP2A 8611 NM_003711 /// NM_176895 /// NR_103485 /// XM_006714724 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0007205 // protein kinase C-activating G-protein coupled receptor signaling pathway // traceable author statement /// 0008285 // negative regulation of cell proliferation // non-traceable author statement /// 0008354 // germ cell migration // traceable author statement /// 0019216 // regulation of lipid metabolic process // non-traceable author statement /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0030518 // intracellular steroid hormone receptor signaling pathway // traceable author statement /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046839 // phospholipid dephosphorylation // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from direct assay /// 0008195 // phosphatidate phosphatase activity // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation -51.42 101.66 -5.14 0.00 0.01 -4.45
212139_at 212139_at D86973 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D86973.1 /DEF=Human mRNA for KIAA0219 gene, partial cds. /FEA=mRNA /GEN=KIAA0219 /DB_XREF=gi:1504019 /UG=Hs.75354 GCN1 (general control of amino-acid synthesis 1, yeast)-like 1 D86973 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) GCN1L1 10985 NM_006836 0006412 // translation // non-traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 60.70 145.40 5.13 0.00 0.01 -4.45
210574_s_at 210574_s_at AF241788 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF241788.1 /DEF=Homo sapiens NPD011 (NPD011) mRNA, complete cds. /FEA=mRNA /GEN=NPD011 /PROD=NPD011 /DB_XREF=gi:12005492 /UG=Hs.263812 nuclear distribution gene C (A.nidulans) homolog /FL=gb:AF241788.1 AF241788 nudC nuclear distribution protein NUDC 10726 NM_006600 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 60.80 262.02 5.13 0.00 0.01 -4.45
205816_at 205816_at NM_002214 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002214.1 /DEF=Homo sapiens integrin, beta 8 (ITGB8), mRNA. /FEA=mRNA /GEN=ITGB8 /PROD=integrin, beta 8 /DB_XREF=gi:4504778 /UG=Hs.52620 integrin, beta 8 /FL=gb:M73780.1 gb:NM_002214.1 NM_002214 integrin, beta 8 ITGB8 3696 NM_002214 /// XM_005249751 /// XM_005249752 0001573 // ganglioside metabolic process // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0060674 // placenta blood vessel development // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0008305 // integrin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation -43.40 30.25 -5.13 0.00 0.01 -4.45
213140_s_at 213140_s_at AB014593 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB014593.1 /DEF=Homo sapiens mRNA for KIAA0693 protein, partial cds. /FEA=mRNA /GEN=KIAA0693 /PROD=KIAA0693 protein /DB_XREF=gi:3327199 /UG=Hs.154429 KIAA0693 protein AB014593 synovial sarcoma translocation gene on chromosome 18-like 1 SS18L1 26039 NM_015558 /// NM_198935 /// XM_005260389 /// XM_005260391 /// XM_006723771 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0050773 // regulation of dendrite development // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000780 // condensed nuclear chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005694 // chromosome // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 45.95 37.45 5.13 0.00 0.01 -4.45
212183_at 212183_at AW511135 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW511135 /FEA=EST /DB_XREF=gi:7149213 /DB_XREF=est:hd43g08.x1 /CLONE=IMAGE:2912318 /UG=Hs.92381 nudix (nucleoside diphosphate linked moiety X)-type motif 4 AW511135 nudix (nucleoside diphosphate linked moiety X)-type motif 4 /// nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 NUDT4 /// NUDT4P1 11163 /// 440672 NM_019094 /// NM_199040 /// NR_002212 /// XM_005268595 0008152 // metabolic process // inferred from electronic annotation /// 0009187 // cyclic nucleotide metabolic process // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement /// 0019935 // cyclic-nucleotide-mediated signaling // traceable author statement /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046831 // regulation of RNA export from nucleus // traceable author statement /// 0046907 // intracellular transport // traceable author statement 0005622 // intracellular // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030515 // snoRNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050072 // m7G(5')pppN diphosphatase activity // inferred from sequence or structural similarity /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // traceable author statement /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation 78.60 135.68 5.12 0.00 0.01 -4.45
210825_s_at 210825_s_at AF130103 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF130103.1 /DEF=Homo sapiens clone FLB2914 PRO0720 mRNA, complete cds. /FEA=mRNA /PROD=PRO0720 /DB_XREF=gi:11493509 /UG=Hs.160483 erythrocyte membrane protein band 7.2 (stomatin) /FL=gb:AF130103.1 AF130103 phosphatidylethanolamine binding protein 1 PEBP1 5037 NM_002567 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008429 // phosphatidylethanolamine binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 197.07 512.51 5.12 0.00 0.01 -4.45
218734_at 218734_at NM_024771 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024771.1 /DEF=Homo sapiens hypothetical protein FLJ13848 (FLJ13848), mRNA. /FEA=mRNA /GEN=FLJ13848 /PROD=hypothetical protein FLJ13848 /DB_XREF=gi:13376118 /UG=Hs.136976 hypothetical protein FLJ13848 /FL=gb:NM_024771.1 NM_024771 N(alpha)-acetyltransferase 40, NatD catalytic subunit NAA40 79829 NM_024771 /// XM_005274295 /// XM_005274296 /// XM_006718689 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 47.23 77.66 5.11 0.00 0.01 -4.45
203819_s_at 203819_s_at AU160004 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU160004 /FEA=EST /DB_XREF=gi:11021525 /DB_XREF=est:AU160004 /CLONE=Y79AA1000871 /UG=Hs.79440 IGF-II mRNA-binding protein 3 /FL=gb:U97188.1 gb:U76705.1 gb:AF117108.1 gb:NM_006547.1 AU160004 insulin-like growth factor 2 mRNA binding protein 3 IGF2BP3 10643 NM_006547 /// XM_006715638 /// XM_006715639 0006412 // translation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0042035 // regulation of cytokine biosynthetic process // inferred by curator /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045182 // translation regulator activity // inferred from sequence or structural similarity /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay 189.33 405.84 5.11 0.00 0.01 -4.45
209608_s_at 209608_s_at BC000408 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000408.1 /DEF=Homo sapiens, acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase), clone MGC:8573, mRNA, complete cds. /FEA=mRNA /PROD=acetyl-Coenzyme A acetyltransferase 2(acetoacetyl Coenzyme A thiolase) /DB_XREF=gi:12653278 /UG=Hs.278544 acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase) /FL=gb:BC000408.1 BC000408 acetyl-CoA acetyltransferase 2 ACAT2 39 NM_005891 /// XM_005266980 0006629 // lipid metabolic process // inferred by curator /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003985 // acetyl-CoA C-acetyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 66.18 138.41 5.11 0.00 0.01 -4.45
200757_s_at 200757_s_at NM_001219 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001219.2 /DEF=Homo sapiens calumenin (CALU), mRNA. /FEA=mRNA /GEN=CALU /PROD=calumenin precursor /DB_XREF=gi:6005991 /UG=Hs.7753 calumenin /FL=gb:U67280.1 gb:AF013759.1 gb:NM_001219.2 NM_001219 calumenin CALU 813 NM_001130674 /// NM_001199671 /// NM_001199672 /// NM_001199673 /// NM_001199674 /// NM_001219 /// NR_074086 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 233.28 737.99 5.11 0.00 0.01 -4.45
204658_at 204658_at NM_013293 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013293.1 /DEF=Homo sapiens transformer-2 alpha (htra-2 alpha) (HSU53209), mRNA. /FEA=mRNA /GEN=HSU53209 /PROD=transformer-2 alpha (htra-2 alpha) /DB_XREF=gi:9558732 /UG=Hs.24937 transformer-2 alpha (htra-2 alpha) /FL=gb:U53209.1 gb:NM_013293.1 NM_013293 transformer 2 alpha homolog (Drosophila) TRA2A 29896 NM_001282757 /// NM_001282758 /// NM_001282759 /// NM_013293 /// XM_005249725 /// XM_006715713 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 49.07 232.94 5.11 0.00 0.01 -4.45
200744_s_at 200744_s_at AI741124 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI741124 /FEA=EST /DB_XREF=gi:5109412 /DB_XREF=est:wg19c04.x1 /CLONE=IMAGE:2365542 /UG=Hs.215595 guanine nucleotide binding protein (G protein), beta polypeptide 1 /FL=gb:NM_002074.1 gb:BC004186.1 AI741124 guanine nucleotide binding protein (G protein), beta polypeptide 1 GNB1 2782 NM_001282538 /// NM_001282539 /// NM_002074 0006112 // energy reserve metabolic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007213 // G-protein coupled acetylcholine receptor signaling pathway // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005622 // intracellular // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from electronic annotation /// 0042622 // photoreceptor outer segment membrane // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097381 // photoreceptor disc membrane // traceable author statement 0003924 // GTPase activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0051020 // GTPase binding // inferred from physical interaction -275.28 591.96 -5.10 0.00 0.01 -4.45
202688_at 202688_at NM_003810 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003810.1 /DEF=Homo sapiens tumor necrosis factor (ligand) superfamily, member 10 (TNFSF10), mRNA. /FEA=mRNA /GEN=TNFSF10 /PROD=tumor necrosis factor (ligand) superfamily,member 10 /DB_XREF=gi:4507592 /UG=Hs.83429 tumor necrosis factor (ligand) superfamily, member 10 /FL=gb:U37518.1 gb:U57059.1 gb:NM_003810.1 NM_003810 tumor necrosis factor (ligand) superfamily, member 10 TNFSF10 8743 NM_001190942 /// NM_001190943 /// NM_003810 /// NR_033994 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008584 // male gonad development // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032813 // tumor necrosis factor receptor superfamily binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -136.48 121.69 -5.09 0.00 0.01 -4.45
202627_s_at 202627_s_at AL574210 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL574210 /FEA=EST /DB_XREF=gi:12934198 /DB_XREF=est:AL574210 /CLONE=CS0DI039YB02 (3 prime) /UG=Hs.82085 serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 /FL=gb:NM_000602.1 gb:M16006.1 AL574210 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 SERPINE1 5054 NM_000602 /// NM_001165413 0001300 // chronological cell aging // inferred from expression pattern /// 0001525 // angiogenesis // inferred from expression pattern /// 0002576 // platelet degranulation // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010469 // regulation of receptor activity // inferred from direct assay /// 0010757 // negative regulation of plasminogen activation // inferred from direct assay /// 0010757 // negative regulation of plasminogen activation // inferred from mutant phenotype /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0014912 // negative regulation of smooth muscle cell migration // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030194 // positive regulation of blood coagulation // inferred from mutant phenotype /// 0030195 // negative regulation of blood coagulation // inferred by curator /// 0030198 // extracellular matrix organization // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0032757 // positive regulation of interleukin-8 production // inferred from mutant phenotype /// 0033629 // negative regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0035491 // positive regulation of leukotriene production involved in inflammatory response // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042730 // fibrinolysis // traceable author statement /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from direct assay /// 0050729 // positive regulation of inflammatory response // inferred from genetic interaction /// 0050829 // defense response to Gram-negative bacterium // inferred from genetic interaction /// 0051918 // negative regulation of fibrinolysis // inferred from direct assay /// 0061044 // negative regulation of vascular wound healing // inferred from genetic interaction /// 0061045 // negative regulation of wound healing // inferred by curator /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype /// 0090026 // positive regulation of monocyte chemotaxis // inferred from mutant phenotype /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2000098 // negative regulation of smooth muscle cell-matrix adhesion // inferred from direct assay /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from mutant phenotype 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement 0002020 // protease binding // inferred from physical interaction /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -1012.73 3560.59 -5.09 0.00 0.01 -4.45
202572_s_at 202572_s_at NM_014902 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014902.1 /DEF=Homo sapiens KIAA0964 protein (KIAA0964), mRNA. /FEA=mRNA /GEN=KIAA0964 /PROD=KIAA0964 protein /DB_XREF=gi:7662411 /UG=Hs.177425 KIAA0964 protein /FL=gb:AB023181.1 gb:NM_014902.1 NM_014902 discs, large (Drosophila) homolog-associated protein 4 DLGAP4 22839 NM_001042486 /// NM_014902 /// NM_183006 /// XM_005260329 /// XM_005260331 /// XM_005260332 /// XM_005260333 /// XR_430296 0007267 // cell-cell signaling // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 53.30 113.12 5.09 0.00 0.01 -4.45
200875_s_at 200875_s_at NM_006392 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006392.1 /DEF=Homo sapiens nucleolar protein (KKED repeat) (NOP56), mRNA. /FEA=mRNA /GEN=NOP56 /PROD=nucleolar protein (KKED repeat) /DB_XREF=gi:5453793 /UG=Hs.296585 nucleolar protein (KKED repeat) /FL=gb:NM_006392.1 NM_006392 microRNA 1292 /// NOP56 ribonucleoprotein /// small nucleolar RNA, C/D box 110 /// small nucleolar RNA, C/D box 57 /// small nucleolar RNA, C/D box 86 MIR1292 /// NOP56 /// SNORD110 /// SNORD57 /// SNORD86 10528 /// 26792 /// 692201 /// 692213 /// 100302138 NM_006392 /// NR_002738 /// NR_003078 /// NR_004399 /// NR_027700 /// NR_031699 0006364 // rRNA processing // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005732 // small nucleolar ribonucleoprotein complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031428 // box C/D snoRNP complex // non-traceable author statement /// 0070761 // pre-snoRNP complex // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0030515 // snoRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 91.35 253.22 5.09 0.00 0.01 -4.45
208868_s_at 208868_s_at BF125756 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF125756 /FEA=EST /DB_XREF=gi:10964796 /DB_XREF=est:601763146F1 /CLONE=IMAGE:4026010 /UG=Hs.282654 Homo sapiens mRNA; cDNA DKFZp564N1272 (from clone DKFZp564N1272); complete cds /FL=gb:AL136676.1 gb:AF087847.1 BF125756 GABA(A) receptor-associated protein like 1 GABARAPL1 23710 NM_031412 /// XM_005253344 0000045 // autophagic vacuole assembly // not recorded /// 0000422 // mitochondrion degradation // not recorded /// 0006914 // autophagy // inferred from electronic annotation /// 0012501 // programmed cell death // not recorded /// 0032258 // CVT pathway // not recorded /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0044805 // late nucleophagy // not recorded /// 0071211 // protein targeting to vacuole involved in autophagy // not recorded 0000407 // pre-autophagosomal structure // not recorded /// 0000421 // autophagic vacuole membrane // not recorded /// 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // not recorded /// 0008429 // phosphatidylethanolamine binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0050811 // GABA receptor binding // not recorded /// 0050811 // GABA receptor binding // inferred from sequence or structural similarity -46.20 63.20 -5.09 0.00 0.01 -4.45
213278_at 213278_at AW014788 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW014788 /FEA=EST /DB_XREF=gi:5863545 /DB_XREF=est:UI-H-BI0-aae-h-10-0-UI.s1 /CLONE=IMAGE:2709354 /UG=Hs.48802 Homo sapiens clone 23632 mRNA sequence AW014788 myotubularin related protein 9 MTMR9 66036 NM_015458 /// XM_005272396 0016311 // dephosphorylation // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation 45.33 71.99 5.09 0.00 0.01 -4.45
201687_s_at 201687_s_at NM_006595 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006595.1 /DEF=Homo sapiens API5-like 1 (API5L1), mRNA. /FEA=mRNA /GEN=API5L1 /PROD=API5-like 1 /DB_XREF=gi:5729729 /UG=Hs.227913 API5-like 1 /FL=gb:AF229254.1 gb:NM_006595.1 NM_006595 apoptosis inhibitor 5 API5 8539 NM_001142930 /// NM_001142931 /// NM_001243747 /// NM_006595 /// NR_024625 /// XM_006718359 0006915 // apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // non-traceable author statement /// 2000270 // negative regulation of fibroblast apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 55.78 168.19 5.08 0.00 0.01 -4.45
218175_at 218175_at NM_025140 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025140.1 /DEF=Homo sapiens hypothetical protein FLJ22471 (FLJ22471), mRNA. /FEA=mRNA /GEN=FLJ22471 /PROD=hypothetical protein FLJ22471 /DB_XREF=gi:13376724 /UG=Hs.288909 hypothetical protein FLJ22471 /FL=gb:NM_025140.1 NM_025140 coiled-coil domain containing 92 CCDC92 80212 NM_025140 /// XM_005253624 /// XM_005253625 /// XM_006719611 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -63.30 312.98 -5.08 0.00 0.01 -4.45
209920_at 209920_at U20165 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U20165.1 /DEF=Human type II serinethreonine kinase receptor mRNA, complete cds. /FEA=mRNA /PROD=type II serinethreonine kinase receptor /DB_XREF=gi:704361 /UG=Hs.53250 bone morphogenetic protein receptor, type II (serinethreonine kinase) /FL=gb:NM_001204.2 gb:U20165.1 gb:D50516.1 U20165 bone morphogenetic protein receptor, type II (serine/threonine kinase) BMPR2 659 NM_001204 /// NM_033346 0001707 // mesoderm formation // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001946 // lymphangiogenesis // inferred from sequence or structural similarity /// 0001974 // blood vessel remodeling // inferred from sequence or structural similarity /// 0002063 // chondrocyte development // inferred from mutant phenotype /// 0003085 // negative regulation of systemic arterial blood pressure // inferred from mutant phenotype /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from expression pattern /// 0009952 // anterior/posterior pattern specification // inferred from sequence or structural similarity /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0014916 // regulation of lung blood pressure // inferred from mutant phenotype /// 0014916 // regulation of lung blood pressure // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030501 // positive regulation of bone mineralization // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0030509 // BMP signaling pathway // traceable author statement /// 0030513 // positive regulation of BMP signaling pathway // inferred from mutant phenotype /// 0032924 // activin receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045906 // negative regulation of vasoconstriction // inferred from sequence or structural similarity /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048286 // lung alveolus development // inferred from sequence or structural similarity /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060836 // lymphatic endothelial cell differentiation // inferred from sequence or structural similarity /// 0060840 // artery development // inferred from sequence or structural similarity /// 0060841 // venous blood vessel development // inferred from sequence or structural similarity /// 0061298 // retina vasculature development in camera-type eye // inferred from sequence or structural similarity /// 1902731 // negative regulation of chondrocyte proliferation // inferred from mutant phenotype /// 2000279 // negative regulation of DNA biosynthetic process // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from mutant phenotype /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044214 // fully spanning plasma membrane // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016362 // activin receptor activity, type II // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -87.75 101.85 -5.08 0.00 0.01 -4.45
203058_s_at 203058_s_at AW299958 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW299958 /FEA=EST /DB_XREF=gi:6709635 /DB_XREF=est:xs44g05.x1 /CLONE=IMAGE:2772536 /UG=Hs.274230 3-phosphoadenosine 5-phosphosulfate synthase 2 /FL=gb:AF150754.2 gb:AF313907.1 gb:AF091242.1 gb:NM_004670.1 gb:AF074331.1 gb:AF173365.1 AW299958 3'-phosphoadenosine 5'-phosphosulfate synthase 2 PAPSS2 9060 NM_001015880 /// NM_004670 0000103 // sulfate assimilation // inferred from electronic annotation /// 0001501 // skeletal system development // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0050428 // 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process // traceable author statement /// 0060348 // bone development // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004020 // adenylylsulfate kinase activity // inferred from electronic annotation /// 0004781 // sulfate adenylyltransferase (ATP) activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from sequence or structural similarity -59.75 232.50 -5.07 0.00 0.01 -4.45
202033_s_at 202033_s_at BG402105 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG402105 /FEA=EST /DB_XREF=gi:13295553 /DB_XREF=est:602465641F1 /CLONE=IMAGE:4593682 /UG=Hs.50421 KIAA0203 gene product /FL=gb:D86958.1 gb:NM_014781.1 BG402105 RB1-inducible coiled-coil 1 RB1CC1 9821 NM_001083617 /// NM_014781 /// XM_006716491 /// XM_006716492 /// XM_006716493 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0010506 // regulation of autophagy // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0034045 // pre-autophagosomal structure membrane // inferred from sequence or structural similarity /// 0070969 // ULK1-ATG13-FIP200 complex // inferred from physical interaction 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation -107.20 201.05 -5.07 0.00 0.01 -4.45
218530_at 218530_at NM_013241 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013241.1 /DEF=Homo sapiens FH1FH2 domain-containing protein (FHOS), mRNA. /FEA=mRNA /GEN=FHOS /PROD=FH1FH2 domain-containing protein /DB_XREF=gi:7019374 /UG=Hs.95231 FH1FH2 domain-containing protein /FL=gb:AF113615.1 gb:NM_013241.1 NM_013241 formin homology 2 domain containing 1 FHOD1 29109 NM_013241 /// XM_005255909 /// XM_005255910 /// XM_006721180 0007015 // actin filament organization // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay 0001725 // stress fiber // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0032059 // bleb // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 98.45 155.60 5.07 0.00 0.01 -4.45
203974_at 203974_at NM_012080 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012080.1 /DEF=Homo sapiens DNA segment, numerous copies, expressed probes (GS1 gene) (DXF68S1E), mRNA. /FEA=mRNA /GEN=DXF68S1E /PROD=DNA segment, numerous copies, expressed probes(GS1 gene) /DB_XREF=gi:6912345 /UG=Hs.78991 DNA segment, numerous copies, expressed probes (GS1 gene) /FL=gb:M86934.1 gb:NM_012080.1 NM_012080 haloacid dehalogenase-like hydrolase domain containing 1 HDHD1 8226 NM_001135565 /// NM_001178135 /// NM_001178136 /// NM_012080 0008152 // metabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0070062 // extracellular vesicular exosome // inferred from direct assay 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 67.75 245.60 5.06 0.00 0.01 -4.45
213315_x_at 213315_x_at L43577 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:L43577 /FEA=EST /DB_XREF=gi:899066 /DB_XREF=est:L43577 /CLONE=EST500 /UG=Hs.82171 Homo sapiens (clone 115392) mRNA L43577 chromosome X open reading frame 40A CXorf40A 91966 NM_001171907 /// NM_001171908 /// NM_001171909 /// NM_178124 /// XM_005262348 /// XM_005262349 /// XM_005262350 /// XM_005278212 0005515 // protein binding // inferred from physical interaction 50.80 146.70 5.06 0.00 0.01 -4.45
208614_s_at 208614_s_at M62994 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M62994.1 /DEF=Homo sapiens thyroid autoantigen (truncated actin-binding protein) mRNA, complete cds. /FEA=mRNA /PROD=thyroid autoantigen /DB_XREF=gi:349450 /UG=Hs.81008 filamin B, beta (actin-binding protein-278) /FL=gb:AF043045.1 gb:AF042166.1 gb:M62994.1 gb:NM_001457.1 M62994 filamin B, beta FLNB 2317 NM_001164317 /// NM_001164318 /// NM_001164319 /// NM_001457 /// XM_005264977 /// XM_005264978 /// XM_005264981 /// XM_005264982 /// XM_006713067 0007016 // cytoskeletal anchoring at plasma membrane // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016021 // integral component of membrane // non-traceable author statement /// 0030018 // Z disc // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 280.88 884.44 5.06 0.00 0.01 -4.45
200810_s_at 200810_s_at NM_001280 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001280.1 /DEF=Homo sapiens cold inducible RNA-binding protein (CIRBP), mRNA. /FEA=mRNA /GEN=CIRBP /PROD=cold inducible RNA-binding protein /DB_XREF=gi:4502846 /UG=Hs.119475 cold inducible RNA-binding protein /FL=gb:D78134.1 gb:BC000403.1 gb:BC000901.1 gb:AF021336.1 gb:NM_001280.1 NM_001280 cold inducible RNA binding protein CIRBP 1153 NM_001280 /// NR_023312 /// NR_023313 /// XM_006722636 /// XM_006722637 /// XM_006722638 /// XR_430127 /// XR_430128 0006950 // response to stress // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009411 // response to UV // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0034063 // stress granule assembly // inferred from sequence or structural similarity /// 0045727 // positive regulation of translation // inferred from direct assay /// 0048255 // mRNA stabilization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030371 // translation repressor activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070181 // small ribosomal subunit rRNA binding // inferred from direct assay 115.87 290.56 5.06 0.00 0.01 -4.45
218809_at 218809_at NM_024960 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024960.1 /DEF=Homo sapiens hypothetical protein FLJ11729 (FLJ11729), mRNA. /FEA=mRNA /GEN=FLJ11729 /PROD=hypothetical protein FLJ11729 /DB_XREF=gi:13376450 /UG=Hs.286212 hypothetical protein FLJ11729 /FL=gb:NM_024960.1 NM_024960 pantothenate kinase 2 PANK2 80025 NM_024960 /// NM_153637 /// NM_153638 /// NM_153639 /// NM_153640 /// NM_153641 /// XM_005260835 /// XM_005260836 /// XM_006723631 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0007286 // spermatid development // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0009060 // aerobic respiration // inferred from electronic annotation /// 0009108 // coenzyme biosynthetic process // traceable author statement /// 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation /// 0015939 // pantothenate metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0070584 // mitochondrion morphogenesis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -60.38 190.99 -5.05 0.00 0.01 -4.45
203057_s_at 203057_s_at AV724783 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV724783 /FEA=EST /DB_XREF=gi:10829513 /DB_XREF=est:AV724783 /CLONE=HTBCEG11 /UG=Hs.26719 zinc-finger DNA-binding protein /FL=gb:D45132.1 gb:NM_015866.1 AV724783 PR domain containing 2, with ZNF domain PRDM2 7799 NM_001007257 /// NM_001135610 /// NM_012231 /// NM_015866 /// XM_005245992 /// XM_005245993 /// XM_005245994 /// XM_005245995 /// XM_005245996 /// XM_005245997 /// XM_005245998 /// XM_006710877 /// XM_006710878 /// XM_006710879 /// XM_006710880 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0032259 // methylation // inferred from electronic annotation /// 0034968 // histone lysine methylation // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 63.47 120.74 5.05 0.00 0.01 -4.45
216267_s_at 216267_s_at BF034906 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF034906 /FEA=EST /DB_XREF=gi:10742618 /DB_XREF=est:601458947F1 /CLONE=IMAGE:3862474 /UG=Hs.91566 PL6 protein BF034906 transmembrane protein 115 TMEM115 11070 NM_007024 0008285 // negative regulation of cell proliferation // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 44.92 74.11 5.05 0.00 0.01 -4.45
217908_s_at 217908_s_at NM_018442 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018442.1 /DEF=Homo sapiens PC326 protein (PC326), mRNA. /FEA=mRNA /GEN=PC326 /PROD=PC326 protein /DB_XREF=gi:8923955 /UG=Hs.279882 PC326 protein /FL=gb:AL136738.1 gb:AF150734.1 gb:NM_018442.1 NM_018442 DDB1 and CUL4 associated factor 6 DCAF6 55827 NM_001017977 /// NM_001198956 /// NM_001198957 /// NM_018442 /// XM_005245331 /// XM_005245332 /// XM_005245333 0016567 // protein ubiquitination // inferred by curator /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction 0005634 // nucleus // inferred from direct assay /// 0080008 // Cul4-RING E3 ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay -40.22 134.71 -5.05 0.00 0.01 -4.45
219806_s_at 219806_s_at NM_020179 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020179.1 /DEF=Homo sapiens FN5 protein (FN5), mRNA. /FEA=mRNA /GEN=FN5 /PROD=FN5 protein /DB_XREF=gi:9910225 /UG=Hs.259737 FN5 protein /FL=gb:AF197137.1 gb:NM_020179.1 NM_020179 single-pass membrane protein with coiled-coil domains 4 SMCO4 56935 NM_020179 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 65.95 75.12 5.05 0.00 0.01 -4.45
203504_s_at 203504_s_at NM_005502 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005502.1 /DEF=Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. /FEA=mRNA /GEN=ABCA1 /PROD=ATP-binding cassette, sub-family A member 1 /DB_XREF=gi:5915657 /UG=Hs.211562 ATP-binding cassette, sub-family A (ABC1), member 1 /FL=gb:AF165281.1 gb:NM_005502.1 gb:AF285167.1 NM_005502 ATP-binding cassette, sub-family A (ABC1), member 1 ABCA1 19 NM_005502 /// XM_005251773 /// XM_005251774 /// XM_005251776 /// XM_005251778 /// XM_005251780 /// XM_006716995 0002790 // peptide secretion // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006497 // protein lipidation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from direct assay /// 0007186 // G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from direct assay /// 0010745 // negative regulation of macrophage derived foam cell differentiation // traceable author statement /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // traceable author statement /// 0015914 // phospholipid transport // inferred from electronic annotation /// 0016197 // endosomal transport // inferred from direct assay /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0032367 // intracellular cholesterol transport // inferred from mutant phenotype /// 0032489 // regulation of Cdc42 protein signal transduction // inferred from mutant phenotype /// 0033344 // cholesterol efflux // inferred from direct assay /// 0033344 // cholesterol efflux // inferred from mutant phenotype /// 0033700 // phospholipid efflux // inferred from direct assay /// 0033700 // phospholipid efflux // inferred from mutant phenotype /// 0034380 // high-density lipoprotein particle assembly // inferred from mutant phenotype /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0038027 // apolipoprotein A-I-mediated signaling pathway // inferred from direct assay /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from direct assay /// 0043691 // reverse cholesterol transport // inferred from mutant phenotype /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045332 // phospholipid translocation // inferred from electronic annotation /// 0050702 // interleukin-1 beta secretion // inferred from mutant phenotype /// 0055091 // phospholipid homeostasis // inferred from mutant phenotype /// 0055098 // response to low-density lipoprotein particle // inferred from expression pattern /// 0060155 // platelet dense granule organization // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071300 // cellular response to retinoic acid // inferred from electronic annotation /// 0071397 // cellular response to cholesterol // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred by curator /// 0005548 // phospholipid transporter activity // inferred from direct assay /// 0008509 // anion transmembrane transporter activity // inferred from sequence or structural similarity /// 0015485 // cholesterol binding // inferred by curator /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // inferred from direct assay /// 0019905 // syntaxin binding // inferred from physical interaction /// 0031267 // small GTPase binding // inferred from physical interaction /// 0034185 // apolipoprotein binding // inferred from physical interaction /// 0034186 // apolipoprotein A-I binding // inferred from physical interaction /// 0034188 // apolipoprotein A-I receptor activity // inferred from direct assay /// 0051117 // ATPase binding // inferred from physical interaction -62.62 75.96 -5.04 0.00 0.01 -4.45
218726_at 218726_at NM_018410 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018410.1 /DEF=Homo sapiens hypothetical protein DKFZp762E1312 (DKFZp762E1312), mRNA. /FEA=mRNA /GEN=DKFZp762E1312 /PROD=hypothetical protein DKFZp762E1312 /DB_XREF=gi:8922180 /UG=Hs.104859 hypothetical protein DKFZp762E1312 /FL=gb:BC001940.1 gb:NM_018410.1 NM_018410 Holliday junction recognition protein HJURP 55355 NM_001282962 /// NM_001282963 /// NM_018410 0006334 // nucleosome assembly // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0034080 // centromere-specific nucleosome assembly // inferred from mutant phenotype /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0043254 // regulation of protein complex assembly // inferred from direct assay /// 0051101 // regulation of DNA binding // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay /// 0042393 // histone binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction -87.32 191.21 -5.04 0.00 0.01 -4.45
208780_x_at 208780_x_at AF154847 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF154847.1 /DEF=Homo sapiens 33 kDa Vamp-associated protein (VAMP) mRNA, complete cds. /FEA=mRNA /GEN=VAMP /PROD=33 kDa Vamp-associated protein /DB_XREF=gi:8099349 /UG=Hs.9006 VAMP (vesicle-associated membrane protein)-associated protein A (33kD) /FL=gb:BC002992.1 gb:AF057358.1 gb:AF044670.1 gb:AF086627.1 gb:NM_003574.1 gb:AF154847.1 AF154847 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa VAPA 9218 NM_003574 /// NM_194434 0006665 // sphingolipid metabolic process // traceable author statement /// 0007165 // signal transduction // inferred from mutant phenotype /// 0008219 // cell death // inferred from mutant phenotype /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0061025 // membrane fusion // traceable author statement /// 0070972 // protein localization to endoplasmic reticulum // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction -382.05 1439.03 -5.04 0.00 0.01 -4.45
208942_s_at 208942_s_at BE866511 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE866511 /FEA=EST /DB_XREF=gi:10315287 /DB_XREF=est:601678885F1 /CLONE=IMAGE:3961461 /UG=Hs.8146 translocation protein 1 /FL=gb:D87127.1 gb:U93239.1 gb:NM_003262.1 BE866511 SEC62 homolog (S. cerevisiae) SEC62 7095 NM_003262 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006620 // posttranslational protein targeting to membrane // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016235 // aggresome // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0004872 // receptor activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 171.53 241.59 5.04 0.00 0.01 -4.45
218092_s_at 218092_s_at NM_004504 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004504.2 /DEF=Homo sapiens HIV-1 Rev binding protein (HRB), mRNA. /FEA=mRNA /GEN=HRB /PROD=HIV-1 Rev binding protein /DB_XREF=gi:7262381 /UG=Hs.171545 HIV-1 Rev binding protein /FL=gb:NM_004504.2 NM_004504 ArfGAP with FG repeats 1 AGFG1 3267 NM_001135187 /// NM_001135188 /// NM_001135189 /// NM_004504 /// XM_005246516 /// XM_006712478 /// XM_006712479 /// XM_006712480 /// XM_006712481 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -72.50 209.43 -5.04 0.00 0.01 -4.45
36564_at 36564_at W27419 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. W27419:31a10 Homo sapiens cDNA /gb=W27419 /gi=1307241 /ug=Hs.64239 /len=803 W27419 ring finger protein 19B RNF19B 127544 NM_001127361 /// NM_153341 /// XM_005270460 /// XM_006710356 /// XM_006710357 /// XM_006710358 0002376 // immune system process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042267 // natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0072643 // interferon-gamma secretion // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0044194 // cytolytic granule // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -61.63 150.11 -5.04 0.00 0.01 -4.45
209579_s_at 209579_s_at AL556619 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL556619 /FEA=EST /DB_XREF=gi:12899460 /DB_XREF=est:AL556619 /CLONE=CS0DK006YH06 (5 prime) /UG=Hs.35947 methyl-CpG binding domain protein 4 /FL=gb:AF072250.1 gb:NM_003925.1 gb:AF114784.1 AL556619 methyl-CpG binding domain protein 4 MBD4 8930 NM_001276270 /// NM_001276271 /// NM_001276272 /// NM_001276273 /// NM_003925 0000737 // DNA catabolic process, endonucleolytic // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // traceable author statement /// 0006285 // base-excision repair, AP site formation // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007095 // mitotic G2 DNA damage checkpoint // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0009314 // response to radiation // inferred from electronic annotation /// 0031572 // G2 DNA damage checkpoint // inferred from electronic annotation /// 0045008 // depyrimidination // traceable author statement 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003696 // satellite DNA binding // traceable author statement /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008263 // pyrimidine-specific mismatch base pair DNA N-glycosylase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 57.40 105.98 5.04 0.00 0.01 -4.45
219491_at 219491_at NM_024036 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024036.1 /DEF=Homo sapiens hypothetical protein MGC3103 (MGC3103), mRNA. /FEA=mRNA /GEN=MGC3103 /PROD=hypothetical protein MGC3103 /DB_XREF=gi:13128987 /UG=Hs.115960 hypothetical protein MGC3103 /FL=gb:BC000207.1 gb:NM_024036.1 NM_024036 leucine rich repeat and fibronectin type III domain containing 4 LRFN4 78999 NM_024036 /// XM_005274239 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 39.70 25.65 5.03 0.00 0.01 -4.45
213988_s_at 213988_s_at BE971383 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE971383 /FEA=EST /DB_XREF=gi:10584719 /DB_XREF=est:601651561F1 /CLONE=IMAGE:3934935 /UG=Hs.28491 spermidinespermine N1-acetyltransferase BE971383 spermidine/spermine N1-acetyltransferase 1 SAT1 6303 NM_002970 /// NR_027783 0001525 // angiogenesis // inferred from expression pattern /// 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // traceable author statement /// 0006598 // polyamine catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009447 // putrescine catabolic process // inferred from electronic annotation /// 0032918 // spermidine acetylation // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004145 // diamine N-acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019809 // spermidine binding // inferred from electronic annotation -399.85 351.52 -5.03 0.00 0.01 -4.45
200685_at 200685_at AU146237 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU146237 /FEA=EST /DB_XREF=gi:11007758 /DB_XREF=est:AU146237 /CLONE=HEMBA1007233 /UG=Hs.11482 splicing factor, arginineserine-rich 11 /FL=gb:M74002.1 gb:NM_004768.1 AU146237 serine/arginine-rich splicing factor 11 SRSF11 9295 NM_001190987 /// NM_004768 /// XM_005271338 /// XM_005271339 /// XM_006711037 /// XM_006711038 /// XM_006711039 /// XM_006711040 /// XM_006711041 /// XR_426640 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 39.60 30.93 5.03 0.00 0.01 -4.45
217861_s_at 217861_s_at NM_013388 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013388.1 /DEF=Homo sapiens prolactin regulatory element binding (PREB), mRNA. /FEA=mRNA /GEN=PREB /PROD=prolactin regulatory element binding /DB_XREF=gi:7019502 /UG=Hs.279784 prolactin regulatory element binding /FL=gb:BC002765.1 gb:AF203687.1 gb:NM_013388.1 gb:AF226684.1 NM_013388 prolactin regulatory element binding PREB 10113 NM_013388 /// XM_006711914 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 51.85 126.78 5.03 0.00 0.01 -4.45
212742_at 212742_at AL530462 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL530462 /FEA=EST /DB_XREF=gi:12793955 /DB_XREF=est:AL530462 /CLONE=CS0DD007YH21 (3 prime) /UG=Hs.16537 hypothetical protein, similar to (U06944) PRAJA1 AL530462 ring finger protein 115 RNF115 27246 NM_014455 /// XM_005272952 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -69.90 171.45 -5.03 0.00 0.01 -4.45
206332_s_at 206332_s_at NM_005531 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005531.1 /DEF=Homo sapiens interferon, gamma-inducible protein 16 (IFI16), mRNA. /FEA=mRNA /GEN=IFI16 /PROD=interferon, gamma-inducible protein 16 /DB_XREF=gi:5031778 /UG=Hs.155530 interferon, gamma-inducible protein 16 /FL=gb:M63838.1 gb:NM_005531.1 NM_005531 interferon, gamma-inducible protein 16 IFI16 3428 NM_001206567 /// NM_005531 /// XM_005245127 /// XM_006711290 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001819 // positive regulation of cytokine production // traceable author statement /// 0002218 // activation of innate immune response // inferred from direct assay /// 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0009615 // response to virus // non-traceable author statement /// 0010506 // regulation of autophagy // inferred from expression pattern /// 0030097 // hemopoiesis // non-traceable author statement /// 0030099 // myeloid cell differentiation // non-traceable author statement /// 0030224 // monocyte differentiation // inferred from direct assay /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032731 // positive regulation of interleukin-1 beta production // inferred from direct assay /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045824 // negative regulation of innate immune response // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from mutant phenotype /// 0071479 // cellular response to ionizing radiation // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype /// 0097202 // activation of cysteine-type endopeptidase activity // inferred from mutant phenotype /// 2000117 // negative regulation of cysteine-type endopeptidase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -90.22 380.71 -5.02 0.00 0.01 -4.46
213123_at 213123_at BE222709 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE222709 /FEA=EST /DB_XREF=gi:8910027 /DB_XREF=est:hu51g06.x1 /CLONE=IMAGE:3173626 /UG=Hs.28785 microfibrillar-associated protein 3 BE222709 microfibrillar-associated protein 3 MFAP3 4238 NM_001135037 /// NM_001242336 /// NM_005927 0030198 // extracellular matrix organization // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 54.37 112.76 5.02 0.00 0.01 -4.46
217941_s_at 217941_s_at NM_018695 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018695.1 /DEF=Homo sapiens erbb2-interacting protein ERBIN (LOC55914), mRNA. /FEA=mRNA /GEN=LOC55914 /PROD=erbb2-interacting protein ERBIN /DB_XREF=gi:8923908 /UG=Hs.8117 erbb2-interacting protein ERBIN /FL=gb:AF263744.1 gb:NM_018695.1 NM_018695 erbb2 interacting protein ERBB2IP 55914 NM_001006600 /// NM_001253697 /// NM_001253698 /// NM_001253699 /// NM_001253701 /// NM_018695 /// XM_005248554 /// XM_005248555 /// XM_005248556 /// XM_006714660 0006605 // protein targeting // inferred from electronic annotation /// 0007049 // cell cycle // non-traceable author statement /// 0007155 // cell adhesion // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0016049 // cell growth // non-traceable author statement /// 0045104 // intermediate filament cytoskeleton organization // non-traceable author statement /// 0045175 // basal protein localization // non-traceable author statement /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // non-traceable author statement 0005604 // basement membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009925 // basal plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation 0005176 // ErbB-2 class receptor binding // traceable author statement /// 0005178 // integrin binding // inferred from physical interaction /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction -50.32 151.51 -5.01 0.00 0.01 -4.46
209907_s_at 209907_s_at AF182198 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF182198.1 /DEF=Homo sapiens intersectin 2 long isoform (ITSN2) mRNA, complete cds. /FEA=mRNA /GEN=ITSN2 /PROD=intersectin 2 long isoform /DB_XREF=gi:7329075 /UG=Hs.166184 intersectin 2 /FL=gb:AF182198.1 AF182198 intersectin 2 ITSN2 50618 NM_006277 /// NM_019595 /// NM_147152 0006897 // endocytosis // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -71.43 168.54 -5.01 0.00 0.01 -4.46
201176_s_at 201176_s_at NM_001655 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001655.2 /DEF=Homo sapiens archain 1 (ARCN1), mRNA. /FEA=mRNA /GEN=ARCN1 /PROD=archain /DB_XREF=gi:11863153 /UG=Hs.33642 archain 1 /FL=gb:NM_001655.2 NM_001655 archain 1 ARCN1 372 NM_001142281 /// NM_001655 /// XM_005271542 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0021691 // cerebellar Purkinje cell layer maturation // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 121.93 301.91 5.01 0.00 0.01 -4.46
202110_at 202110_at NM_001866 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001866.1 /DEF=Homo sapiens cytochrome c oxidase subunit VIIb (COX7B), mRNA. /FEA=mRNA /GEN=COX7B /PROD=cytochrome c oxidase subunit VIIb /DB_XREF=gi:4502990 /UG=Hs.75752 cytochrome c oxidase subunit VIIb /FL=gb:NM_001866.1 NM_001866 cytochrome c oxidase subunit VIIb COX7B 1349 NM_001866 0007417 // central nervous system development // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 158.47 424.39 5.01 0.00 0.01 -4.46
218151_x_at 218151_x_at NM_024531 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024531.1 /DEF=Homo sapiens hypothetical protein FLJ11856 (FLJ11856), mRNA. /FEA=mRNA /GEN=FLJ11856 /PROD=hypothetical protein FLJ11856 /DB_XREF=gi:13375681 /UG=Hs.6459 hypothetical protein FLJ11856 /FL=gb:BC002917.1 gb:NM_024531.1 NM_024531 solute carrier family 52 (riboflavin transporter), member 2 SLC52A2 79581 NM_001253815 /// NM_001253816 /// NM_024531 /// NR_045600 /// XM_006716658 /// XM_006716659 /// XM_006716660 0006810 // transport // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0032218 // riboflavin transport // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001618 // virus receptor activity // inferred from electronic annotation /// 0032217 // riboflavin transporter activity // inferred from direct assay 61.57 100.31 5.00 0.00 0.01 -4.46
201281_at 201281_at NM_007002 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007002.1 /DEF=Homo sapiens cell membrane glycoprotein, 110000M(r) (surface antigen) (GP110), mRNA. /FEA=mRNA /GEN=GP110 /PROD=cell membrane glycoprotein, 110000M(r) (surfaceantigen) /DB_XREF=gi:5901959 /UG=Hs.90107 cell membrane glycoprotein, 110000M(r) (surface antigen) /FL=gb:NM_007002.1 gb:D64154.1 NM_007002 adhesion regulating molecule 1 ADRM1 11047 NM_001281437 /// NM_001281438 /// NM_007002 /// NM_175573 /// XM_005260257 0006368 // transcription elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 0010950 // positive regulation of endopeptidase activity // inferred from direct assay /// 0043248 // proteasome assembly // inferred from direct assay 0000502 // proteasome complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0061133 // endopeptidase activator activity // inferred from direct assay /// 0070628 // proteasome binding // inferred from direct assay -162.70 581.15 -5.00 0.00 0.01 -4.46
208795_s_at 208795_s_at D55716 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D55716.1 /DEF=Human mRNA for P1cdc47, complete cds. /FEA=mRNA /GEN=P1cdc47 /PROD=P1cdc47 /DB_XREF=gi:1255616 /UG=Hs.77152 minichromosome maintenance deficient (S. cerevisiae) 7 /FL=gb:D55716.1 D55716 minichromosome maintenance complex component 7 MCM7 4176 NM_001278595 /// NM_005916 /// NM_182776 /// XM_005250348 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006268 // DNA unwinding involved in DNA replication // inferred from electronic annotation /// 0006270 // DNA replication initiation // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0015979 // photosynthesis // inferred from electronic annotation /// 0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from electronic annotation 0000785 // chromatin // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042555 // MCM complex // inferred from direct assay /// 0042555 // MCM complex // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016851 // magnesium chelatase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation -69.40 186.12 -5.00 0.00 0.01 -4.46
201191_at 201191_at H15647 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:H15647 /FEA=EST /DB_XREF=gi:880467 /DB_XREF=est:ym27b09.s1 /CLONE=IMAGE:49287 /UG=Hs.79709 phosphotidylinositol transfer protein /FL=gb:D30036.1 gb:M73704.1 gb:NM_006224.1 H15647 phosphatidylinositol transfer protein, alpha PITPNA 5306 NM_006224 0006629 // lipid metabolic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007601 // visual perception // traceable author statement /// 0015914 // phospholipid transport // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008525 // phosphatidylcholine transporter activity // traceable author statement /// 0008526 // phosphatidylinositol transporter activity // traceable author statement /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0070540 // stearic acid binding // inferred from electronic annotation 57.15 106.75 5.00 0.00 0.01 -4.46
221622_s_at 221622_s_at AF246240 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF246240.1 /DEF=Homo sapiens HT026 mRNA, complete cds. /FEA=mRNA /PROD=HT026 /DB_XREF=gi:12005514 /UG=Hs.24371 uncharacterized hypothalamus protein HT007 /FL=gb:AF246240.1 AF246240 transmembrane protein 126B TMEM126B 55863 NM_001193537 /// NM_001193538 /// NM_001256546 /// NM_001256547 /// NM_018480 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 82.45 322.95 5.00 0.00 0.01 -4.46
209193_at 209193_at M24779 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M24779.1 /DEF=Homo sapiens protein kinase-related oncogene (PIM1) mRNA, complete cds. /FEA=mRNA /GEN=PIM1 /PROD=protein kinase /DB_XREF=gi:1066790 /UG=Hs.81170 pim-1 oncogene /FL=gb:M24779.1 gb:M16750.1 gb:M54915.1 gb:NM_002648.1 M24779 Pim-1 proto-oncogene, serine/threonine kinase PIM1 5292 NM_001243186 /// NM_002648 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0043024 // ribosomal small subunit binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -63.50 69.80 -5.00 0.00 0.01 -4.46
202946_s_at 202946_s_at NM_014962 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014962.1 /DEF=Homo sapiens KIAA0952 protein (KIAA0952), mRNA. /FEA=mRNA /GEN=KIAA0952 /PROD=KIAA0952 protein /DB_XREF=gi:7662401 /UG=Hs.7935 KIAA0952 protein /FL=gb:AB023169.1 gb:NM_014962.1 NM_014962 BTB (POZ) domain containing 3 BTBD3 22903 NM_001282550 /// NM_001282551 /// NM_001282552 /// NM_001282554 /// NM_014962 /// NM_181443 /// XM_006723550 /// XM_006723551 0007399 // nervous system development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from sequence or structural similarity /// 0048813 // dendrite morphogenesis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation 54.30 96.62 5.00 0.00 0.01 -4.46
201020_at 201020_at NM_003405 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003405.1 /DEF=Homo sapiens tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, eta polypeptide (YWHAH), mRNA. /FEA=mRNA /GEN=YWHAH /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, eta polypeptide /DB_XREF=gi:4507950 /UG=Hs.75544 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, eta polypeptide /FL=gb:BC003047.1 gb:L20422.1 gb:NM_003405.1 NM_003405 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta YWHAH 7533 NM_003405 0002028 // regulation of sodium ion transport // inferred from direct assay /// 0006713 // glucocorticoid catabolic process // inferred from direct assay /// 0006886 // intracellular protein transport // inferred from sequence or structural similarity /// 0006915 // apoptotic process // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0042921 // glucocorticoid receptor signaling pathway // inferred from direct assay /// 0045664 // regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048167 // regulation of synaptic plasticity // inferred from sequence or structural similarity /// 0050774 // negative regulation of dendrite morphogenesis // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0086010 // membrane depolarization during action potential // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement /// 2000649 // regulation of sodium ion transmembrane transporter activity // inferred from direct assay 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0014704 // intercalated disc // inferred by curator /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0017080 // sodium channel regulator activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from sequence or structural similarity /// 0035259 // glucocorticoid receptor binding // inferred from physical interaction /// 0044325 // ion channel binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction 92.53 267.66 5.00 0.00 0.01 -4.46
212460_at 212460_at BE738425 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE738425 /FEA=EST /DB_XREF=gi:10152417 /DB_XREF=est:601572441T1 /CLONE=IMAGE:3839147 /UG=Hs.241507 ribosomal protein S6 BE738425 serine palmitoyltransferase, small subunit A SPTSSA 171546 NM_138288 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0017059 // serine C-palmitoyltransferase complex // inferred from direct assay 0004758 // serine C-palmitoyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 69.30 189.38 4.99 0.00 0.01 -4.46
214949_at 214949_at AL050136 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050136.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586L141 (from clone DKFZp586L141). /FEA=mRNA /DB_XREF=gi:4884346 /UG=Hs.140945 Homo sapiens mRNA; cDNA DKFZp586L141 (from clone DKFZp586L141) AL050136 60.80 132.10 4.99 0.00 0.01 -4.46
209195_s_at 209195_s_at AF250226 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF250226.1 /DEF=Homo sapiens adenylyl cyclase type VI mRNA, complete cds. /FEA=mRNA /PROD=adenylyl cyclase type VI /DB_XREF=gi:9049782 /UG=Hs.12373 adenylate cyclase 6 /FL=gb:NM_015270.2 gb:AF250226.1 AF250226 adenylate cyclase 6 ADCY6 112 NM_015270 /// NM_020983 /// XM_005268605 /// XM_006719209 /// XM_006719210 /// XM_006719211 /// XM_006719212 /// XM_006719213 0006112 // energy reserve metabolic process // traceable author statement /// 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // traceable author statement /// 0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007212 // dopamine receptor signaling pathway // inferred from direct assay /// 0007268 // synaptic transmission // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from sequence or structural similarity /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from direct assay /// 0071870 // cellular response to catecholamine stimulus // inferred from direct assay 0005886 // plasma membrane // traceable author statement /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 89.43 107.51 4.99 0.00 0.01 -4.46
209598_at 209598_at AB020690 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB020690.1 /DEF=Homo sapiens mRNA for KIAA0883 protein, complete cds. /FEA=mRNA /GEN=KIAA0883 /PROD=KIAA0883 protein /DB_XREF=gi:4240254 /UG=Hs.7782 paraneoplastic antigen MA2 /FL=gb:AF286487.1 gb:NM_007257.1 gb:AB020690.1 AB020690 paraneoplastic Ma antigen 2 PNMA2 10687 NM_007257 0006915 // apoptotic process // non-traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 49.55 63.12 4.99 0.00 0.01 -4.46
207535_s_at 207535_s_at NM_002502 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002502.1 /DEF=Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49p100) (NFKB2), mRNA. /FEA=mRNA /GEN=NFKB2 /PROD=nuclear factor of kappa light polypeptide geneenhancer in B-cells 2 (p49p100) /DB_XREF=gi:4505382 /UG=Hs.73090 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49p100) /FL=gb:NM_002502.1 NM_002502 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) NFKB2 4791 NM_001077494 /// NM_001261403 /// NM_001288724 /// NM_002502 /// XM_005269860 /// XM_005269861 /// XM_006717869 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002268 // follicular dendritic cell differentiation // inferred from electronic annotation /// 0002467 // germinal center formation // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048536 // spleen development // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0033257 // Bcl3/NF-kappaB2 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -52.43 58.76 -4.98 0.00 0.01 -4.46
212074_at 212074_at BE972774 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE972774 /FEA=EST /DB_XREF=gi:10586110 /DB_XREF=est:601652004F1 /CLONE=IMAGE:3935281 /UG=Hs.7531 KIAA0810 protein BE972774 Sad1 and UNC84 domain containing 1 SUN1 23353 NM_001130965 /// NM_001171944 /// NM_001171945 /// NM_001171946 /// NM_025154 0006810 // transport // inferred from electronic annotation /// 0006998 // nuclear envelope organization // inferred from genetic interaction /// 0071816 // tail-anchored membrane protein insertion into ER membrane // inferred from mutant phenotype /// 0090286 // cytoskeletal anchoring at nuclear membrane // inferred from direct assay /// 0090292 // nuclear matrix anchoring at nuclear membrane // inferred from direct assay 0002080 // acrosomal membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005639 // integral component of nuclear inner membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0034993 // SUN-KASH complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0071818 // BAT3 complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005521 // lamin binding // inferred from electronic annotation 54.72 206.16 4.98 0.00 0.01 -4.46
219353_at 219353_at NM_017687 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017687.1 /DEF=Homo sapiens hypothetical protein FLJ20147 (FLJ20147), mRNA. /FEA=mRNA /GEN=FLJ20147 /PROD=hypothetical protein FLJ20147 /DB_XREF=gi:8923144 /UG=Hs.23984 hypothetical protein FLJ20147 /FL=gb:NM_017687.1 NM_017687 NHL repeat containing 2 NHLRC2 374354 NM_198514 0005515 // protein binding // inferred from electronic annotation 40.50 36.20 4.98 0.00 0.01 -4.46
220486_x_at 220486_x_at NM_017698 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017698.1 /DEF=Homo sapiens hypothetical protein FLJ20173 (FLJ20173), mRNA. /FEA=mRNA /GEN=FLJ20173 /PROD=hypothetical protein FLJ20173 /DB_XREF=gi:8923168 /UG=Hs.5472 hypothetical protein FLJ20173 /FL=gb:NM_017698.1 NM_017698 uncharacterized LOC101928589 /// transmembrane protein 164 LOC101928589 /// TMEM164 84187 /// 101928589 NM_017698 /// NM_032227 /// XM_005262205 /// XM_005262206 /// XM_005262208 /// XM_005262239 /// XM_006724708 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 79.45 130.62 4.98 0.00 0.01 -4.46
216210_x_at 216210_x_at AA046650 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA046650 /FEA=EST /DB_XREF=gi:1524566 /DB_XREF=est:zk72e08.s1 /CLONE=IMAGE:488390 /UG=Hs.40342 putative nuclear protein AA046650 TRIO and F-actin binding protein TRIOBP 11078 NM_001039141 /// NM_007032 /// NM_138632 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0030047 // actin modification // non-traceable author statement /// 0051016 // barbed-end actin filament capping // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // non-traceable author statement /// 0030496 // midbody // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // non-traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0045159 // myosin II binding // non-traceable author statement /// 0051015 // actin filament binding // inferred from direct assay 95.78 204.71 4.97 0.00 0.01 -4.46
219146_at 219146_at NM_024683 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024683.1 /DEF=Homo sapiens hypothetical protein FLJ22729 (FLJ22729), mRNA. /FEA=mRNA /GEN=FLJ22729 /PROD=hypothetical protein FLJ22729 /DB_XREF=gi:13375953 /UG=Hs.94891 hypothetical protein FLJ22729 /FL=gb:NM_024683.1 NM_024683 transcription elongation factor, mitochondrial TEFM 79736 NM_024683 /// XM_006722084 0006119 // oxidative phosphorylation // inferred from mutant phenotype /// 0006259 // DNA metabolic process // inferred from direct assay /// 0006264 // mitochondrial DNA replication // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006390 // transcription from mitochondrial promoter // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008821 // crossover junction endodeoxyribonuclease activity // inferred from direct assay /// 0030337 // DNA polymerase processivity factor activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 40.92 39.36 4.97 0.00 0.01 -4.46
200618_at 200618_at NM_006148 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006148.1 /DEF=Homo sapiens LIM and SH3 protein 1 (LASP1), mRNA. /FEA=mRNA /GEN=LASP1 /PROD=LIM and SH3 protein 1 /DB_XREF=gi:5453709 /UG=Hs.75080 LIM and SH3 protein 1 /FL=gb:NM_006148.1 NM_006148 LIM and SH3 protein 1 LASP1 3927 NM_001271608 /// NM_006148 /// NR_073384 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0009967 // positive regulation of signal transduction // traceable author statement /// 0034220 // ion transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015075 // ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation 158.87 689.26 4.97 0.00 0.01 -4.46
212061_at 212061_at AB002330 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB002330.1 /DEF=Human mRNA for KIAA0332 gene, partial cds. /FEA=mRNA /GEN=KIAA0332 /DB_XREF=gi:2224604 /UG=Hs.7976 KIAA0332 protein AB002330 U2 snRNP-associated SURP domain containing U2SURP 23350 NM_001080415 /// XM_005247246 /// XM_005247248 /// XM_005247249 0006396 // RNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 45.25 32.90 4.97 0.00 0.01 -4.46
217913_at 217913_at NM_013245 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013245.1 /DEF=Homo sapiens vacuolar sorting protein 4 (VPS4), mRNA. /FEA=mRNA /GEN=VPS4 /PROD=vacuolar sorting protein 4 /DB_XREF=gi:7019568 /UG=Hs.234839 vacuolar sorting protein 4 /FL=gb:AF159063.1 gb:AF112215.1 gb:NM_013245.1 NM_013245 vacuolar protein sorting 4 homolog A (S. cerevisiae) VPS4A 27183 NM_013245 0000910 // cytokinesis // inferred from direct assay /// 0006200 // ATP catabolic process // non-traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009838 // abscission // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0031565 // cytokinesis checkpoint // inferred from mutant phenotype /// 0032466 // negative regulation of cytokinesis // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0000815 // ESCRT III complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042623 // ATPase activity, coupled // non-traceable author statement 69.40 196.22 4.97 0.00 0.01 -4.46
211185_s_at 211185_s_at AF130099 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF130099.1 /DEF=Homo sapiens clone FLC1464 PRO3102 mRNA, complete cds. /FEA=mRNA /PROD=PRO3102 /DB_XREF=gi:11493501 /UG=Hs.13453 splicing factor 3b, subunit 1, 155kD /FL=gb:AF130099.1 AF130099 splicing factor 3b, subunit 1, 155kDa SF3B1 23451 NM_001005526 /// NM_012433 /// XM_005246428 /// XR_241300 /// XR_241301 /// XR_241302 0000375 // RNA splicing, via transesterification reactions // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -150.38 864.51 -4.97 0.00 0.01 -4.46
201995_at 201995_at NM_000127 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000127.1 /DEF=Homo sapiens exostoses (multiple) 1 (EXT1), mRNA. /FEA=mRNA /GEN=EXT1 /PROD=exostoses (multiple) 1 /DB_XREF=gi:4557570 /UG=Hs.184161 exostoses (multiple) 1 /FL=gb:BC001174.1 gb:NM_000127.1 NM_000127 exostosin glycosyltransferase 1 EXT1 2131 NM_000127 0001501 // skeletal system development // traceable author statement /// 0001503 // ossification // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // inferred from direct assay /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007369 // gastrulation // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from direct assay /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from sequence or structural similarity /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from mutant phenotype /// 0021772 // olfactory bulb development // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0033692 // cellular polysaccharide biosynthetic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0072498 // embryonic skeletal joint development // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // non-traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0031227 // intrinsic component of endoplasmic reticulum membrane // inferred from electronic annotation 0008375 // acetylglucosaminyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from direct assay /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0042328 // heparan sulfate N-acetylglucosaminyltransferase activity // non-traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0050508 // glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // inferred from sequence or structural similarity /// 0050508 // glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // non-traceable author statement /// 0050509 // N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0050509 // N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity // non-traceable author statement -187.53 428.34 -4.97 0.00 0.01 -4.46
210817_s_at 210817_s_at BC004130 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004130.1 /DEF=Homo sapiens, nuclear domain 10 protein, clone MGC:1399, mRNA, complete cds. /FEA=mRNA /PROD=nuclear domain 10 protein /DB_XREF=gi:13278698 /UG=Hs.154230 nuclear domain 10 protein /FL=gb:BC004130.1 BC004130 calcium binding and coiled-coil domain 2 CALCOCO2 10241 NM_001261390 /// NM_001261391 /// NM_001261393 /// NM_001261395 /// NM_005831 0016032 // viral process // traceable author statement /// 0034341 // response to interferon-gamma // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction -104.47 210.29 -4.97 0.00 0.01 -4.46
213296_at 213296_at BF339133 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF339133 /FEA=EST /DB_XREF=gi:11285556 /DB_XREF=est:602038434F1 /CLONE=IMAGE:4186304 /UG=Hs.247220 peroxisome biogenesis factor 10 BF339133 retention in endoplasmic reticulum sorting receptor 1 RER1 11079 NM_007033 /// XM_005244713 /// XM_006710305 /// XM_006710306 /// XM_006710307 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // inferred from direct assay 42.75 107.12 4.97 0.00 0.01 -4.46
208828_at 208828_at BC004170 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004170.1 /DEF=Homo sapiens, histone fold protein CHRAC17; DNA polymerase epsilon p17 subunit, clone MGC:2725, mRNA, complete cds. /FEA=mRNA /PROD=histone fold protein CHRAC17; DNA polymeraseepsilon p17 subunit /DB_XREF=gi:13278800 /UG=Hs.108112 histone fold protein CHRAC17; DNA polymerase epsilon p17 subunit /FL=gb:BC003166.1 gb:BC004170.1 gb:AF226077.1 gb:NM_017443.1 BC004170 polymerase (DNA directed), epsilon 3, accessory subunit POLE3 54107 NM_001278255 /// NM_017443 /// NR_027261 0006260 // DNA replication // traceable author statement /// 0006261 // DNA-dependent DNA replication // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // traceable author statement /// 0043966 // histone H3 acetylation // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay /// 0008622 // epsilon DNA polymerase complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 94.52 214.29 4.96 0.00 0.01 -4.46
217043_s_at 217043_s_at U95822 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U95822.1 /DEF=Human putative transmembrane GTPase mRNA, partial cds. /FEA=mRNA /GEN=fzo /PROD=putative transmembrane GTPase /DB_XREF=gi:2252803 /UG=Hs.197877 hypothetical protein FLJ20693 U95822 mitofusin 1 MFN1 55669 NM_017927 /// NM_033540 /// XM_005247595 /// XM_005247596 0006184 // GTP catabolic process // inferred from electronic annotation /// 0008053 // mitochondrial fusion // inferred from direct assay /// 0008053 // mitochondrial fusion // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 49.43 94.56 4.96 0.00 0.01 -4.46
208682_s_at 208682_s_at AF126181 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF126181.1 /DEF=Homo sapiens breast cancer-associated gene 1 protein (BCG1) mRNA, complete cds. /FEA=mRNA /GEN=BCG1 /PROD=breast cancer-associated gene 1 protein /DB_XREF=gi:4732088 /UG=Hs.4943 hepatocellular carcinoma associated protein; breast cancer associated gene 1 /FL=gb:NM_006787.1 gb:BC000304.1 gb:U92544.1 gb:AF126181.1 gb:AF128527.1 gb:AF128528.1 AF126181 melanoma antigen family D, 2 MAGED2 10916 NM_014599 /// NM_177433 /// NM_201222 0016020 // membrane // inferred from direct assay 110.45 265.23 4.96 0.00 0.01 -4.46
201964_at 201964_at N64643 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N64643 /FEA=EST /DB_XREF=gi:1212472 /DB_XREF=est:yz87a06.s1 /CLONE=IMAGE:290002 /UG=Hs.154919 KIAA0625 protein /FL=gb:NM_015046.1 N64643 senataxin SETX 23064 NM_015046 /// XM_005272171 /// XM_005272172 /// XM_005272173 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from direct assay /// 0006369 // termination of RNA polymerase II transcription // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred by curator /// 0003678 // DNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 45.00 114.58 4.96 0.00 0.01 -4.46
205449_at 205449_at NM_013299 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013299.1 /DEF=Homo sapiens protein predicted by clone 23627 (HSU79266), mRNA. /FEA=mRNA /GEN=HSU79266 /PROD=protein predicted by clone 23627 /DB_XREF=gi:9558738 /UG=Hs.23642 protein predicted by clone 23627 /FL=gb:U79266.1 gb:NM_013299.1 NM_013299 SAC3 domain containing 1 SAC3D1 29901 NM_013299 /// XM_005273960 /// XM_005273961 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051298 // centrosome duplication // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 49.15 29.80 4.95 0.00 0.01 -4.46
202309_at 202309_at NM_005956 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005956.2 /DEF=Homo sapiens methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase (MTHFD1), mRNA. /FEA=mRNA /GEN=MTHFD1 /PROD=methylenetetrahydrofolate dehydrogenase (NADP+dependent), methenyltetrahydrofolate cyclohydrolase,formyltetrahydrofolate synthetase /DB_XREF=gi:13699867 /UG=Hs.172665 methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase /FL=gb:NM_005956.2 gb:J04031.1 NM_005956 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase MTHFD1 4522 NM_005956 0000105 // histidine biosynthetic process // inferred from electronic annotation /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // not recorded /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009396 // folic acid-containing compound biosynthetic process // inferred from electronic annotation /// 0035999 // tetrahydrofolate interconversion // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046655 // folic acid metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004329 // formate-tetrahydrofolate ligase activity // not recorded /// 0004329 // formate-tetrahydrofolate ligase activity // traceable author statement /// 0004477 // methenyltetrahydrofolate cyclohydrolase activity // not recorded /// 0004477 // methenyltetrahydrofolate cyclohydrolase activity // traceable author statement /// 0004486 // methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity // traceable author statement /// 0004488 // methylenetetrahydrofolate dehydrogenase (NADP+) activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 71.25 230.65 4.95 0.00 0.01 -4.46
221745_at 221745_at BE538424 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE538424 /FEA=EST /DB_XREF=gi:9767069 /DB_XREF=est:601068256F1 /CLONE=IMAGE:3454693 /UG=Hs.288283 Homo sapiens cDNA: FLJ22355 fis, clone HRC06344 BE538424 DDB1 and CUL4 associated factor 7 DCAF7 10238 NM_001003725 /// NM_005828 /// NR_073585 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred by curator /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0016363 // nuclear matrix // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0080008 // Cul4-RING E3 ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 48.82 77.49 4.95 0.00 0.01 -4.46
216973_s_at 216973_s_at S49765 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S49765.1 /DEF=homeobox gene human, mRNA Partial, 769 nt. /FEA=mRNA /GEN=homeobox gene /DB_XREF=gi:233572 /UG=Hs.819 homeo box B7 S49765 homeobox B7 HOXB7 3217 NM_004502 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0007275 // multicellular organismal development // non-traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 108.65 205.47 4.95 0.00 0.01 -4.46
208433_s_at 208433_s_at NM_017522 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017522.1 /DEF=Homo sapiens apolipoprotein E receptor 2 (HSZ75190), mRNA. /FEA=mRNA /GEN=HSZ75190 /PROD=apolipoprotein E receptor 2 /DB_XREF=gi:8923799 /UG=Hs.54481 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor /FL=gb:NM_017522.1 NM_017522 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor LRP8 7804 NM_001018054 /// NM_004631 /// NM_017522 /// NM_033300 /// XM_005271173 /// XM_005271174 /// XM_005271175 /// XM_005271176 /// XM_006710881 /// XM_006710882 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001523 // retinoid metabolic process // traceable author statement /// 0006508 // proteolysis // non-traceable author statement /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006897 // endocytosis // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // non-traceable author statement /// 0021541 // ammon gyrus development // inferred from sequence or structural similarity /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021819 // layer formation in cerebral cortex // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0032793 // positive regulation of CREB transcription factor activity // inferred from sequence or structural similarity /// 0038026 // reelin-mediated signaling pathway // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0050804 // regulation of synaptic transmission // inferred from sequence or structural similarity /// 0061003 // positive regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from sequence or structural similarity /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071397 // cellular response to cholesterol // inferred from electronic annotation /// 1900006 // positive regulation of dendrite development // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred by curator /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008035 // high-density lipoprotein particle binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0030229 // very-low-density lipoprotein particle receptor activity // inferred from direct assay /// 0034185 // apolipoprotein binding // inferred by curator /// 0038025 // reelin receptor activity // inferred from sequence or structural similarity 54.28 65.31 4.95 0.00 0.01 -4.46
204823_at 204823_at NM_014903 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014903.1 /DEF=Homo sapiens KIAA0938 protein (KIAA0938), mRNA. /FEA=mRNA /GEN=KIAA0938 /PROD=KIAA0938 protein /DB_XREF=gi:7662389 /UG=Hs.174188 KIAA0938 protein /FL=gb:AB023155.1 gb:NM_014903.1 NM_014903 neuron navigator 3 NAV3 89795 NM_001024383 /// NM_014903 /// XM_005269215 /// XM_006719675 /// XM_006719676 /// XM_006719677 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation -207.25 248.75 -4.94 0.00 0.01 -4.46
205567_at 205567_at NM_003654 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003654.1 /DEF=Homo sapiens carbohydrate (chondroitin 6keratan) sulfotransferase 1 (CHST1), mRNA. /FEA=mRNA /GEN=CHST1 /PROD=carbohydrate (chondroitin 6keratan)sulfotransferase 1 /DB_XREF=gi:4502840 /UG=Hs.104576 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 /FL=gb:U65637.1 gb:AB003791.1 gb:AF090137.1 gb:NM_003654.1 NM_003654 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 CHST1 8534 NM_003654 /// XM_006718356 /// XM_006718357 /// XR_428858 0005975 // carbohydrate metabolic process // traceable author statement /// 0005976 // polysaccharide metabolic process // traceable author statement /// 0006012 // galactose metabolic process // inferred from direct assay /// 0006790 // sulfur compound metabolic process // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // inferred from direct assay /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0008146 // sulfotransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0045130 // keratan sulfotransferase activity // inferred from direct assay 72.95 291.02 4.94 0.00 0.01 -4.46
205618_at 205618_at NM_000950 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000950.1 /DEF=Homo sapiens proline-rich Gla (G-carboxyglutamic acid) polypeptide 1 (PRRG1), mRNA. /FEA=mRNA /GEN=PRRG1 /PROD=proline-rich Gla (G-carboxyglutamic acid)polypeptide 1 /DB_XREF=gi:4506134 /UG=Hs.40637 proline-rich Gla (G-carboxyglutamic acid) polypeptide 1 /FL=gb:AF009242.1 gb:NM_000950.1 NM_000950 proline rich Gla (G-carboxyglutamic acid) 1 PRRG1 5638 NM_000950 /// NM_001142395 /// NM_001173486 /// NM_001173489 /// NM_001173490 0005576 // extracellular region // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 77.85 204.93 4.94 0.00 0.01 -4.46
201853_s_at 201853_s_at NM_021873 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021873.1 /DEF=Homo sapiens cell division cycle 25B (CDC25B), transcript variant 3, mRNA. /FEA=mRNA /GEN=CDC25B /PROD=cell division cycle 25B, isoform 3 /DB_XREF=gi:11641412 /UG=Hs.153752 cell division cycle 25B /FL=gb:NM_021873.1 NM_021873 cell division cycle 25B CDC25B 994 NM_001287516 /// NM_001287517 /// NM_001287518 /// NM_001287519 /// NM_001287520 /// NM_001287522 /// NM_001287524 /// NM_004358 /// NM_021872 /// NM_021873 /// NM_021874 /// NM_212530 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000087 // mitotic M phase // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0001556 // oocyte maturation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007144 // female meiosis I // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0032467 // positive regulation of cytokinesis // inferred from mutant phenotype /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction 71.38 156.94 4.93 0.00 0.01 -4.46
212309_at 212309_at AV725315 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV725315 /FEA=EST /DB_XREF=gi:10830580 /DB_XREF=est:AV725315 /CLONE=HTCCAG11 /UG=Hs.108614 KIAA0627 protein; Drosophila multiple asters (Mast)-like homolog 2 AV725315 cytoplasmic linker associated protein 2 CLASP2 23122 NM_001207044 /// NM_015097 /// XM_006713036 /// XM_006713037 /// XM_006713038 /// XM_006713039 /// XM_006713040 /// XM_006713041 /// XM_006713042 /// XM_006713043 /// XM_006713044 /// XM_006713045 /// XM_006713046 /// XM_006713047 /// XM_006713048 /// XM_006713049 /// XM_006713050 /// XM_006713051 /// XM_006713052 /// XM_006713053 /// XM_006713054 /// XM_006713055 /// XM_006713056 /// XM_006713057 /// XM_006713058 /// XM_006713059 /// XM_006713060 0000278 // mitotic cell cycle // traceable author statement /// 0007020 // microtubule nucleation // inferred from mutant phenotype /// 0007026 // negative regulation of microtubule depolymerization // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0016477 // cell migration // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from mutant phenotype /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from mutant phenotype /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0034453 // microtubule anchoring // inferred from mutant phenotype /// 0036065 // fucosylation // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005828 // kinetochore microtubule // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // non-traceable author statement /// 0043515 // kinetochore binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from direct assay 50.07 49.89 4.93 0.00 0.01 -4.46
204366_s_at 204366_s_at NM_001521 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001521.1 /DEF=Homo sapiens general transcription factor IIIC, polypeptide 2 (beta subunit, 110kD) (GTF3C2), mRNA. /FEA=mRNA /GEN=GTF3C2 /PROD=general transcription factor IIIC, polypeptide 2(beta subunit, 110kD) /DB_XREF=gi:4504204 /UG=Hs.75782 general transcription factor IIIC, polypeptide 2 (beta subunit, 110kD) /FL=gb:D13636.1 gb:NM_001521.1 NM_001521 general transcription factor IIIC, polypeptide 2, beta 110kDa GTF3C2 2976 NM_001035521 /// NM_001521 /// XM_005264272 /// XM_005264273 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006383 // transcription from RNA polymerase III promoter // inferred from direct assay /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0042791 // 5S class rRNA transcription from RNA polymerase III type 1 promoter // inferred by curator /// 0042797 // tRNA transcription from RNA polymerase III promoter // inferred by curator 0000127 // transcription factor TFIIIC complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 69.73 178.84 4.93 0.00 0.01 -4.46
201549_x_at 201549_x_at NM_006618 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006618.1 /DEF=Homo sapiens putative DNAchromatin binding motif (PLU-1), mRNA. /FEA=mRNA /GEN=PLU-1 /PROD=putative DNAchromatin binding motif /DB_XREF=gi:5729977 /UG=Hs.143323 putative DNAchromatin binding motif /FL=gb:NM_006618.1 NM_006618 lysine (K)-specific demethylase 5B KDM5B 10765 NM_006618 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034720 // histone H3-K4 demethylation // inferred from direct assay /// 0034721 // histone H3-K4 demethylation, trimethyl-H3-K4-specific // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0032453 // histone demethylase activity (H3-K4 specific) // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // inferred from direct assay /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -59.70 188.50 -4.93 0.00 0.01 -4.46
217829_s_at 217829_s_at NM_006590 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006590.1 /DEF=Homo sapiens SnRNP assembly defective 1 homolog (SAD1), mRNA. /FEA=mRNA /GEN=SAD1 /PROD=SnRNP assembly defective 1 homolog /DB_XREF=gi:5730024 /UG=Hs.12820 SnRNP assembly defective 1 homolog /FL=gb:AF130096.1 gb:BC001384.1 gb:AF132955.1 gb:NM_006590.1 NM_006590 ubiquitin specific peptidase 39 USP39 10713 NM_001256725 /// NM_001256726 /// NM_001256727 /// NM_001256728 /// NM_006590 /// NR_046347 /// XM_006711922 /// XM_006711923 0000245 // spliceosomal complex assembly // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 50.65 70.67 4.92 0.00 0.01 -4.46
202794_at 202794_at NM_002194 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002194.2 /DEF=Homo sapiens inositol polyphosphate-1-phosphatase (INPP1), mRNA. /FEA=mRNA /GEN=INPP1 /PROD=inositol polyphosphate-1-phosphatase /DB_XREF=gi:4755138 /UG=Hs.32309 inositol polyphosphate-1-phosphatase /FL=gb:L08488.1 gb:NM_002194.2 NM_002194 inositol polyphosphate-1-phosphatase INPP1 3628 NM_001128928 /// NM_002194 /// XM_005246532 /// XM_006712498 0006796 // phosphate-containing compound metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0004441 // inositol-1,4-bisphosphate 1-phosphatase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052829 // inositol-1,3,4-trisphosphate 1-phosphatase activity // traceable author statement 91.53 228.59 4.92 0.00 0.01 -4.46
202371_at 202371_at NM_024863 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024863.1 /DEF=Homo sapiens hypothetical protein FLJ21174 (FLJ21174), mRNA. /FEA=mRNA /GEN=FLJ21174 /PROD=hypothetical protein FLJ21174 /DB_XREF=gi:13376293 /UG=Hs.194329 hypothetical protein FLJ21174 /FL=gb:AF271783.1 gb:NM_024863.1 NM_024863 transcription elongation factor A (SII)-like 4 TCEAL4 79921 NM_001006935 /// NM_001006936 /// NM_001006937 /// NM_024863 /// XM_005262192 /// XM_005262193 /// XM_005262194 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003746 // translation elongation factor activity // inferred from electronic annotation 85.47 300.16 4.92 0.00 0.01 -4.46
201224_s_at 201224_s_at AU147713 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU147713 /FEA=EST /DB_XREF=gi:11009234 /DB_XREF=est:AU147713 /CLONE=MAMMA1001474 /UG=Hs.18192 SerArg-related nuclear matrix protein (plenty of prolines 101-like) /FL=gb:AF048977.1 gb:NM_005839.1 AU147713 serine/arginine repetitive matrix 1 SRRM1 10250 NM_005839 /// XM_005245717 /// XM_005245718 /// XM_005245719 /// XM_005245720 /// XM_005245721 /// XM_005245722 /// XR_241182 /// XR_241183 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 54.45 68.40 4.92 0.00 0.01 -4.46
201290_at 201290_at NM_014300 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014300.1 /DEF=Homo sapiens signal peptidase complex (18kD) (SPC18), mRNA. /FEA=mRNA /GEN=SPC18 /PROD=signal peptidase complex (18kD) /DB_XREF=gi:7657608 /UG=Hs.9534 signal peptidase complex (18kD) /FL=gb:BC000359.1 gb:AF061737.1 gb:AF108945.1 gb:NM_014300.1 NM_014300 SEC11 homolog A (S. cerevisiae) SEC11A 23478 NM_001271918 /// NM_001271919 /// NM_001271920 /// NM_001271921 /// NM_001271922 /// NM_014300 /// NR_073518 0006412 // translation // traceable author statement /// 0006465 // signal peptide processing // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 134.55 843.05 4.92 0.00 0.01 -4.46
220342_x_at 220342_x_at NM_017992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017992.1 /DEF=Homo sapiens hypothetical protein FLJ10083 (FLJ10083), mRNA. /FEA=mRNA /GEN=FLJ10083 /PROD=hypothetical protein FLJ10083 /DB_XREF=gi:8922223 /UG=Hs.279951 hypothetical protein FLJ10083 /FL=gb:NM_017992.1 NM_017992 ER degradation enhancer, mannosidase alpha-like 3 EDEM3 80267 NM_025191 /// XM_005245499 0006457 // protein folding // traceable author statement /// 0006516 // glycoprotein catabolic process // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004569 // glycoprotein endo-alpha-1,2-mannosidase activity // inferred from electronic annotation /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 50.85 90.88 4.92 0.00 0.01 -4.46
201076_at 201076_at NM_005008 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005008.1 /DEF=Homo sapiens non-histone chromosome protein 2 (S. cerevisiae)-like 1 (NHP2L1), mRNA. /FEA=mRNA /GEN=NHP2L1 /PROD=non-histone chromosome protein 2 (S.cerevisiae)-like 1 /DB_XREF=gi:4826859 /UG=Hs.182255 non-histone chromosome protein 2 (S. cerevisiae)-like 1 /FL=gb:BC005358.1 gb:D50420.1 gb:AF091076.1 gb:NM_005008.1 gb:AF155235.1 NM_005008 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) NHP2L1 4809 NM_001003796 /// NM_005008 /// XM_005261620 /// XM_006724258 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031428 // box C/D snoRNP complex // non-traceable author statement 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0030515 // snoRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 46.85 139.60 4.92 0.00 0.01 -4.46
212492_s_at 212492_s_at AW237172 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW237172 /FEA=EST /DB_XREF=gi:6569561 /DB_XREF=est:xm66e04.x1 /CLONE=IMAGE:2689182 /UG=Hs.301011 KIAA0876 protein AW237172 lysine (K)-specific demethylase 4B KDM4B 23030 NM_015015 /// XM_005259521 /// XM_005259522 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -134.25 145.85 -4.91 0.00 0.01 -4.46
200625_s_at 200625_s_at NM_006367 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006367.2 /DEF=Homo sapiens adenylyl cyclase-associated protein (CAP), mRNA. /FEA=mRNA /GEN=CAP /PROD=adenylyl cyclase-associated protein /DB_XREF=gi:10938021 /UG=Hs.104125 adenylyl cyclase-associated protein /FL=gb:NM_006367.2 gb:L12168.1 gb:M98474.1 NM_006367 CAP, adenylate cyclase-associated protein 1 (yeast) CAP1 10487 NM_001105530 /// NM_006367 /// XM_005270367 /// XM_005270368 /// XM_006710294 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007190 // activation of adenylate cyclase activity // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 240.75 693.05 4.91 0.00 0.01 -4.46
202877_s_at 202877_s_at W72082 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W72082 /FEA=EST /DB_XREF=gi:1382588 /DB_XREF=est:zd70c06.s1 /CLONE=IMAGE:345994 /UG=Hs.97199 complement component C1q receptor /FL=gb:NM_012072.2 gb:U94333.1 W72082 CD93 molecule CD93 22918 NM_012072 0006909 // phagocytosis // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042116 // macrophage activation // non-traceable author statement 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred by curator /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation 0001849 // complement component C1q binding // inferred from direct assay /// 0004872 // receptor activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation 173.28 316.21 4.91 0.00 0.01 -4.46
218854_at 218854_at NM_013352 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013352.1 /DEF=Homo sapiens squamous cell carcinoma antigen recognized by T cell (SART-2), mRNA. /FEA=mRNA /GEN=SART-2 /PROD=squamous cell carcinoma antigen recognized by Tcell /DB_XREF=gi:7019520 /UG=Hs.58636 squamous cell carcinoma antigen recognized by T cell /FL=gb:AF098066.1 gb:NM_013352.1 NM_013352 dermatan sulfate epimerase DSE 29940 NM_001080976 /// NM_013352 /// XM_005266953 0005975 // carbohydrate metabolic process // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // inferred from electronic annotation /// 0030208 // dermatan sulfate biosynthetic process // inferred from direct assay /// 0030208 // dermatan sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016853 // isomerase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0047757 // chondroitin-glucuronate 5-epimerase activity // inferred from direct assay -48.52 108.64 -4.91 0.00 0.01 -4.46
207507_s_at 207507_s_at NM_001689 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001689.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 (ATP5G3), mRNA. /FEA=mRNA /GEN=ATP5G3 /PROD=ATP synthase, H+ transporting, mitochondrial F0complex, subunit c (subunit 9) isoform 3 /DB_XREF=gi:4502300 /UG=Hs.429 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 /FL=gb:U09813.1 gb:NM_001689.1 NM_001689 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) ATP5G3 518 NM_001002258 /// NM_001190329 /// NM_001689 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 303.33 899.19 4.90 0.00 0.01 -4.46
204656_at 204656_at AL138752 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL138752 /DEF=Human DNA sequence from clone RP11-3J10 on chromosome 9p12-13.3 Contains part of a novel gene, the 3 end of the SHB (SHB adaptor protein (a Src homology 2 ) protein ) gene, the gene for CG7943 protein, a pseudogene similar to CGI-31 protein, a ps... /FEA=mRNA_2 /DB_XREF=gi:8452480 /UG=Hs.244542 SHB adaptor protein (a Src homology 2 protein) /FL=gb:NM_003028.1 AL138752 Src homology 2 domain containing adaptor protein B SHB 6461 NM_003028 0001525 // angiogenesis // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // traceable author statement /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042100 // B cell proliferation // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 1900194 // negative regulation of oocyte maturation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -45.00 45.68 -4.90 0.00 0.01 -4.46
209878_s_at 209878_s_at M62399 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M62399.1 /DEF=Human NF-kappa-B transcription factor p65 DNA binding subunit mRNA, complete cds. /FEA=mRNA /PROD=NF-kappa-B transcription factor /DB_XREF=gi:189503 /UG=Hs.75569 v-rel avian reticuloendotheliosis viral oncogene homolog A (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (p65)) /FL=gb:M62399.1 M62399 v-rel avian reticuloendotheliosis viral oncogene homolog A RELA 5970 NM_001145138 /// NM_001243984 /// NM_001243985 /// NM_021975 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001889 // liver development // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006117 // acetaldehyde metabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006952 // defense response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from direct assay /// 0006968 // cellular defense response // non-traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0010035 // response to inorganic substance // inferred from electronic annotation /// 0010224 // response to UV-B // inferred from direct assay /// 0014040 // positive regulation of Schwann cell differentiation // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0031293 // membrane protein intracellular domain proteolysis // traceable author statement /// 0032332 // positive regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0033590 // response to cobalamin // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051607 // defense response to virus // non-traceable author statement /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from genetic interaction /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071316 // cellular response to nicotine // inferred from mutant phenotype /// 0071347 // cellular response to interleukin-1 // inferred from direct assay /// 0071354 // cellular response to interleukin-6 // inferred from mutant phenotype /// 0071356 // cellular response to tumor necrosis factor // inferred from direct assay /// 0071375 // cellular response to peptide hormone stimulus // inferred from mutant phenotype /// 2000630 // positive regulation of miRNA metabolic process // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0001205 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0033613 // activating transcription factor binding // inferred from physical interaction /// 0042301 // phosphate ion binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from physical interaction /// 0070491 // repressing transcription factor binding // inferred from physical interaction /// 0071532 // ankyrin repeat binding // inferred from electronic annotation -77.15 142.03 -4.90 0.00 0.01 -4.46
209064_x_at 209064_x_at AL136920 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136920.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586C051 (from clone DKFZp586C051); complete cds. /FEA=mRNA /GEN=DKFZp586C051 /PROD=hypothetical protein /DB_XREF=gi:12053334 /UG=Hs.109643 polyadenylate binding protein-interacting protein 1 /FL=gb:AL136920.1 AL136920 poly(A) binding protein interacting protein 1 PAIP1 10605 NM_006451 /// NM_182789 /// NM_183323 /// XM_005248230 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from direct assay /// 0048255 // mRNA stabilization // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008494 // translation activator activity // inferred from direct assay 60.70 88.90 4.90 0.00 0.01 -4.46
205479_s_at 205479_s_at NM_002658 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002658.1 /DEF=Homo sapiens plasminogen activator, urokinase (PLAU), mRNA. /FEA=mRNA /GEN=PLAU /PROD=plasminogen activator, urokinase /DB_XREF=gi:4505862 /UG=Hs.77274 plasminogen activator, urokinase /FL=gb:M15476.1 gb:NM_002658.1 NM_002658 plasminogen activator, urokinase PLAU 5328 NM_001145031 /// NM_002658 /// XM_006717893 0001666 // response to hypoxia // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007599 // hemostasis // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from direct assay /// 0014909 // smooth muscle cell migration // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042730 // fibrinolysis // traceable author statement /// 0061041 // regulation of wound healing // inferred by curator /// 2000097 // regulation of smooth muscle cell-matrix adhesion // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -139.15 213.97 -4.89 0.00 0.01 -4.46
201685_s_at 201685_s_at NM_014828 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014828.1 /DEF=Homo sapiens KIAA0737 gene product (KIAA0737), mRNA. /FEA=mRNA /GEN=KIAA0737 /PROD=KIAA0737 gene product /DB_XREF=gi:7662273 /UG=Hs.194035 KIAA0737 gene product /FL=gb:AB018280.1 gb:NM_014828.1 NM_014828 TOX high mobility group box family member 4 TOX4 9878 NM_014828 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 45.17 50.71 4.89 0.00 0.01 -4.46
218421_at 218421_at NM_022766 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022766.1 /DEF=Homo sapiens hypothetical protein FLJ23239 (FLJ23239), mRNA. /FEA=mRNA /GEN=FLJ23239 /PROD=hypothetical protein FLJ23239 /DB_XREF=gi:12232440 /UG=Hs.34516 hypothetical protein FLJ23239 /FL=gb:NM_022766.1 gb:BC004278.1 NM_022766 ceramide kinase CERK 64781 NM_022766 /// NM_182661 0006665 // sphingolipid metabolic process // traceable author statement /// 0006672 // ceramide metabolic process // inferred from direct assay /// 0006672 // ceramide metabolic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0007205 // protein kinase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046834 // lipid phosphorylation // inferred from direct assay /// 0046834 // lipid phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001729 // ceramide kinase activity // inferred from direct assay /// 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 105.48 354.29 4.89 0.00 0.01 -4.46
217988_at 217988_at NM_021178 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021178.1 /DEF=Homo sapiens enhancer of invasion 10 (HEI10), mRNA. /FEA=mRNA /GEN=HEI10 /PROD=enhancer of invasion 10 /DB_XREF=gi:10863978 /UG=Hs.107003 enhancer of invasion 10 /FL=gb:NM_021178.1 gb:BC000369.1 gb:BC001218.1 gb:BC004435.1 gb:AF216381.1 NM_021178 cyclin B1 interacting protein 1, E3 ubiquitin protein ligase CCNB1IP1 57820 NM_021178 /// NM_182849 /// NM_182851 /// NM_182852 0001825 // blastocyst formation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // inferred from sequence or structural similarity /// 0007286 // spermatid development // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035265 // organ growth // inferred from electronic annotation /// 0051026 // chiasma assembly // inferred from sequence or structural similarity 0000795 // synaptonemal complex // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -53.30 145.72 -4.88 0.00 0.01 -4.46
203093_s_at 203093_s_at NM_006351 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006351.1 /DEF=Homo sapiens translocase of inner mitochondrial membrane 44 (yeast) homolog (TIM44), mRNA. /FEA=mRNA /GEN=TIM44 /PROD=translocase of inner mitochondrial membrane 44(yeast) homolog /DB_XREF=gi:5454123 /UG=Hs.123178 translocase of inner mitochondrial membrane 44 (yeast) homolog /FL=gb:AF026030.1 gb:NM_006351.1 NM_006351 translocase of inner mitochondrial membrane 44 homolog (yeast) TIMM44 10469 NM_006351 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071806 // protein transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation -52.15 99.33 -4.88 0.00 0.01 -4.46
203286_at 203286_at NM_014901 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014901.1 /DEF=Homo sapiens KIAA1100 protein (KIAA1100), mRNA. /FEA=mRNA /GEN=KIAA1100 /PROD=KIAA1100 protein /DB_XREF=gi:7662485 /UG=Hs.179946 KIAA1100 protein /FL=gb:AB029023.1 gb:NM_014901.1 NM_014901 ring finger protein 44 RNF44 22838 NM_014901 /// XM_005265840 /// XM_005265841 /// XM_005265842 /// XM_005265843 /// XM_005265844 /// XM_005265845 /// XM_006714831 /// XM_006714832 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -134.60 200.20 -4.88 0.00 0.01 -4.46
218319_at 218319_at NM_020651 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020651.2 /DEF=Homo sapiens pellino (Drosophila) homolog 1 (PELI1), mRNA. /FEA=mRNA /GEN=PELI1 /PROD=pellino protein /DB_XREF=gi:11037062 /UG=Hs.7886 pellino (Drosophila) homolog 1 /FL=gb:AF302505.1 gb:AF300987.1 gb:NM_020651.2 NM_020651 pellino E3 ubiquitin protein ligase 1 PELI1 57162 NM_020651 /// XM_005264436 /// XM_005264437 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0001819 // positive regulation of cytokine production // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0008063 // Toll signaling pathway // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034141 // positive regulation of toll-like receptor 3 signaling pathway // inferred from electronic annotation /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from electronic annotation /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0043331 // response to dsRNA // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0050868 // negative regulation of T cell activation // inferred from electronic annotation /// 0050871 // positive regulation of B cell activation // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation -91.62 192.04 -4.88 0.00 0.01 -4.46
208892_s_at 208892_s_at BC003143 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003143.1 /DEF=Homo sapiens, dual specificity phosphatase 6, clone MGC:3789, mRNA, complete cds. /FEA=mRNA /PROD=dual specificity phosphatase 6 /DB_XREF=gi:13111942 /UG=Hs.180383 dual specificity phosphatase 6 /FL=gb:BC003562.1 gb:BC003143.1 gb:BC005047.1 gb:AB013382.1 gb:NM_001946.1 BC003143 dual specificity phosphatase 6 DUSP6 1848 NM_001946 /// NM_022652 0000188 // inactivation of MAPK activity // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042663 // regulation of endodermal cell fate specification // not recorded /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051409 // response to nitrosative stress // inferred from expression pattern /// 0060420 // regulation of heart growth // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0070848 // response to growth factor // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from direct assay -341.55 795.42 -4.88 0.00 0.01 -4.46
201489_at 201489_at BC005020 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005020.1 /DEF=Homo sapiens, peptidylprolyl isomerase F (cyclophilin F), clone MGC:11022, mRNA, complete cds. /FEA=mRNA /PROD=peptidylprolyl isomerase F (cyclophilin F) /DB_XREF=gi:13477126 /UG=Hs.173125 peptidylprolyl isomerase F (cyclophilin F) /FL=gb:BC005020.1 gb:M80254.1 gb:NM_005729.1 BC005020 peptidylprolyl isomerase F PPIF 10105 NM_005729 /// XM_005269379 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0002931 // response to ischemia // inferred from sequence or structural similarity /// 0006457 // protein folding // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0010849 // regulation of proton-transporting ATPase activity, rotational mechanism // inferred from sequence or structural similarity /// 0010939 // regulation of necrotic cell death // inferred from electronic annotation /// 0010940 // positive regulation of necrotic cell death // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // inferred from sequence or structural similarity /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0046902 // regulation of mitochondrial membrane permeability // inferred from sequence or structural similarity /// 0070301 // cellular response to hydrogen peroxide // inferred from mutant phenotype /// 0071243 // cellular response to arsenic-containing substance // inferred from sequence or structural similarity /// 0071277 // cellular response to calcium ion // inferred from sequence or structural similarity /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from sequence or structural similarity /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0090324 // negative regulation of oxidative phosphorylation // inferred from sequence or structural similarity /// 1902445 // regulation of mitochondrial membrane permeability involved in programmed necrotic cell death // inferred from mutant phenotype /// 2000276 // negative regulation of oxidative phosphorylation uncoupler activity // inferred from sequence or structural similarity /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0016020 // membrane // traceable author statement 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016018 // cyclosporin A binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 116.83 143.69 4.88 0.00 0.01 -4.46
214151_s_at 214151_s_at AU144243 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU144243 /FEA=EST /DB_XREF=gi:11005764 /DB_XREF=est:AU144243 /CLONE=HEMBA1001328 /UG=Hs.247118 phosphatidylinositol glycan, class B AU144243 cell cycle progression 1 /// DYX1C1-CCPG1 readthrough (NMD candidate) CCPG1 /// DYX1C1-CCPG1 9236 /// 100533483 NM_001204450 /// NM_001204451 /// NM_004748 /// NM_020739 /// NR_037923 0007049 // cell cycle // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 2001106 // regulation of Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 48.15 80.38 4.88 0.00 0.01 -4.46
212311_at 212311_at AA522514 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA522514 /FEA=EST /DB_XREF=gi:2263226 /DB_XREF=est:ni38c01.s1 /CLONE=IMAGE:979104 /UG=Hs.49500 KIAA0746 protein AA522514 sel-1 suppressor of lin-12-like 3 (C. elegans) SEL1L3 23231 NM_015187 /// XM_005248143 /// XM_006713956 /// XM_006713957 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -71.95 182.72 -4.88 0.00 0.01 -4.46
208765_s_at 208765_s_at NM_005826 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005826.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein R (HNRPR), mRNA. /FEA=CDS /GEN=HNRPR /PROD=heterogeneous nuclear ribonucleoprotein R /DB_XREF=gi:5031754 /UG=Hs.15265 heterogeneous nuclear ribonucleoprotein R /FL=gb:BC001449.1 gb:AF000364.1 gb:NM_005826.1 NM_005826 heterogeneous nuclear ribonucleoprotein R HNRNPR 10236 NM_001102397 /// NM_001102398 /// NM_001102399 /// NM_005826 /// XM_005245711 /// XM_005245712 /// XM_005245713 /// XM_005245714 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // non-traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 227.65 317.73 4.87 0.00 0.01 -4.46
214246_x_at 214246_x_at AI859060 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI859060 /FEA=EST /DB_XREF=gi:5512676 /DB_XREF=est:wl66d06.x1 /CLONE=IMAGE:2429867 /UG=Hs.278295 cholinergic receptor, nicotinic, epsilon polypeptide AI859060 misshapen-like kinase 1 MINK1 50488 NM_001024937 /// NM_015716 /// NM_153827 /// NM_170663 /// XM_005256664 /// XM_005256665 /// XM_005256666 /// XM_006721530 /// XM_006721531 /// XM_006721532 /// XM_006721533 /// XM_006721534 /// XM_006721535 /// XM_006721536 /// XM_006721537 /// XM_006721538 0001952 // regulation of cell-matrix adhesion // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0007254 // JNK cascade // traceable author statement /// 0007268 // synaptic transmission // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0022407 // regulation of cell-cell adhesion // inferred from mutant phenotype /// 0030334 // regulation of cell migration // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from sequence or structural similarity /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048813 // dendrite morphogenesis // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 2000311 // regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 55.77 171.59 4.87 0.00 0.01 -4.46
219199_at 219199_at NM_014423 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014423.1 /DEF=Homo sapiens ALL1 fused gene from 5q31 (AF5Q31), mRNA. /FEA=mRNA /GEN=AF5Q31 /PROD=ALL1 fused gene from 5q31 /DB_XREF=gi:7656878 /UG=Hs.231967 ALL1 fused gene from 5q31 /FL=gb:AF197927.1 gb:NM_014423.1 NM_014423 AF4/FMR2 family, member 4 AFF4 27125 NM_014423 /// XM_005271963 /// XM_005271964 /// XM_006714587 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007286 // spermatid development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -62.25 76.03 -4.86 0.00 0.01 -4.46
203627_at 203627_at AI830698 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI830698 /FEA=EST /DB_XREF=gi:5451454 /DB_XREF=est:wj52f06.x1 /CLONE=IMAGE:2406467 /UG=Hs.239176 insulin-like growth factor 1 receptor /FL=gb:NM_000875.2 AI830698 insulin-like growth factor 1 receptor IGF1R 3480 NM_000875 /// NM_001291858 /// NM_152452 /// XM_005254896 /// XM_005254897 /// XM_006720486 /// XM_006720487 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006955 // immune response // inferred from mutant phenotype /// 0007165 // signal transduction // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010656 // negative regulation of muscle cell apoptotic process // inferred from electronic annotation /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred by curator /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030010 // establishment of cell polarity // inferred from electronic annotation /// 0030238 // male sex determination // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030879 // mammary gland development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032467 // positive regulation of cytokinesis // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0038083 // peptidyl-tyrosine autophosphorylation // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043409 // negative regulation of MAPK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0046328 // regulation of JNK cascade // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // inferred from direct assay /// 0051054 // positive regulation of DNA metabolic process // inferred from electronic annotation /// 0051262 // protein tetramerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051389 // inactivation of MAPKK activity // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0090031 // positive regulation of steroid hormone biosynthetic process // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred by curator /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001965 // G-protein alpha-subunit binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005010 // insulin-like growth factor-activated receptor activity // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005520 // insulin-like growth factor binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from physical interaction /// 0043559 // insulin binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // inferred from physical interaction -120.90 194.12 -4.86 0.00 0.01 -4.46
213069_at 213069_at AI148659 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI148659 /FEA=EST /DB_XREF=gi:3677128 /DB_XREF=est:qc69c01.x1 /CLONE=IMAGE:1714848 /UG=Hs.296326 ESTs AI148659 heart development protein with EGF-like domains 1 HEG1 57493 NM_020733 /// XM_005247666 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001885 // endothelial cell development // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0001944 // vasculature development // inferred from electronic annotation /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0003017 // lymph circulation // inferred from electronic annotation /// 0003209 // cardiac atrium morphogenesis // inferred from electronic annotation /// 0003281 // ventricular septum development // inferred from electronic annotation /// 0007043 // cell-cell junction assembly // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0048845 // venous blood vessel morphogenesis // inferred from electronic annotation /// 0050878 // regulation of body fluid levels // inferred from electronic annotation /// 0060039 // pericardium development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 78.45 157.18 4.86 0.00 0.01 -4.46
213251_at 213251_at AV712064 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV712064 /FEA=EST /DB_XREF=gi:10731370 /DB_XREF=est:AV712064 /CLONE=DCAAUD05 /UG=Hs.9456 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 AV712064 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 SMARCA5 8467 NM_003601 0000183 // chromatin silencing at rDNA // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // traceable author statement /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006352 // DNA-templated transcription, initiation // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016584 // nucleosome positioning // inferred from direct assay /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0000793 // condensed chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005677 // chromatin silencing complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016589 // NURF complex // inferred from direct assay /// 0031010 // ISWI-type complex // inferred from electronic annotation /// 0031213 // RSF complex // inferred from physical interaction /// 0043596 // nuclear replication fork // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0031491 // nucleosome binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from direct assay 44.68 111.11 4.85 0.00 0.01 -4.46
200867_at 200867_at AL031685 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031685 /DEF=Human DNA sequence from clone RP5-963K23 on chromosome 20q13.11-13.2 Contains a KRT18 (Keratin type I, Cytoskeletal 18 (Cytokeratin 18, CK18,CYK18)) pseudogene, a gene for a novel protein, the gene for spermatogenesis associated protein PD1 (KIAA0... /FEA=mRNA_2 /DB_XREF=gi:9368423 /UG=Hs.10590 zinc finger protein 313 /FL=gb:AF265215.1 gb:NM_018683.1 AL031685 ring finger protein 114 RNF114 55905 NM_018683 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 42.20 60.00 4.85 0.00 0.01 -4.46
220091_at 220091_at NM_017585 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017585.2 /DEF=Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 6 (SLC2A6), mRNA. /FEA=mRNA /GEN=SLC2A6 /PROD=sugar transporter (SLC2A6 gene) /DB_XREF=gi:9938031 /UG=Hs.244378 solute carrier family 2 (facilitated glucose transporter), member 6 /FL=gb:NM_017585.2 NM_017585 solute carrier family 2 (facilitated glucose transporter), member 6 SLC2A6 11182 NM_001145099 /// NM_017585 /// XR_428513 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // non-traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // non-traceable author statement /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation -69.55 75.28 -4.84 0.00 0.01 -4.46
208643_s_at 208643_s_at J04977 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J04977.1 /DEF=Human Ku autoimmune antigen gene, complete cds. /FEA=mRNA /GEN=G22P1 /DB_XREF=gi:186791 /UG=Hs.84981 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kD) /FL=gb:NM_021141.2 gb:J04977.1 gb:M30938.1 J04977 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) XRCC5 7520 NM_021141 /// XM_005246836 /// XM_005246837 0000723 // telomere maintenance // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from mutant phenotype /// 0006303 // double-strand break repair via nonhomologous end joining // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0060218 // hematopoietic stem cell differentiation // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from electronic annotation /// 0071475 // cellular hyperosmotic salinity response // inferred from electronic annotation /// 0071481 // cellular response to X-ray // inferred from electronic annotation /// 0075713 // establishment of integrated proviral latency // traceable author statement 0000783 // nuclear telomere cap complex // traceable author statement /// 0000784 // nuclear chromosome, telomeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0043564 // Ku70:Ku80 complex // inferred from direct assay /// 0070419 // nonhomologous end joining complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author statement /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003691 // double-stranded telomeric DNA binding // inferred from direct assay /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042162 // telomeric DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from mutant phenotype 189.15 430.88 4.84 0.00 0.01 -4.46
209255_at 209255_at D87454 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D87454.1 /DEF=Human mRNA for KIAA0265 gene, partial cds. /FEA=mRNA /GEN=KIAA0265 /DB_XREF=gi:1665796 /UG=Hs.192966 KIAA0265 protein /FL=gb:AF277177.1 D87454 kelch domain containing 10 KLHDC10 23008 NM_014997 /// XM_005250233 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 47.57 80.39 4.84 0.00 0.01 -4.46
213117_at 213117_at AW138594 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW138594 /FEA=EST /DB_XREF=gi:6142912 /DB_XREF=est:UI-H-BI1-acw-b-06-0-UI.s1 /CLONE=IMAGE:2715610 /UG=Hs.106283 hypothetical protein FLJ10262 AW138594 kelch-like family member 9 KLHL9 55958 NM_001040713 /// NM_018847 0000910 // cytokinesis // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0030496 // midbody // inferred from direct assay /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 48.60 64.33 4.84 0.00 0.01 -4.46
215235_at 215235_at AL110273 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL110273.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564P0562 (from clone DKFZp564P0562); partial cds. /FEA=mRNA /GEN=DKFZp564P0562 /PROD=hypothetical protein /DB_XREF=gi:5817091 /UG=Hs.77196 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) AL110273 spectrin, alpha, non-erythrocytic 1 SPTAN1 6709 NM_001130438 /// NM_001195532 /// NM_003127 /// XM_006717245 /// XM_006717246 /// XM_006717247 /// XM_006717248 /// XM_006717249 /// XM_006717250 /// XM_006717251 /// XM_006717252 /// XM_006717253 /// XM_006717254 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0051693 // actin filament capping // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0008091 // spectrin // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0030507 // spectrin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 100.87 383.21 4.83 0.00 0.01 -4.46
201209_at 201209_at NM_004964 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004964.2 /DEF=Homo sapiens histone deacetylase 1 (HDAC1), mRNA. /FEA=mRNA /GEN=HDAC1 /PROD=histone deacetylase 1 /DB_XREF=gi:13128859 /UG=Hs.88556 histone deacetylase 1 /FL=gb:BC000301.1 gb:U50079.1 gb:NM_004964.2 gb:D50405.1 NM_004964 histone deacetylase 1 HDAC1 3065 NM_004964 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006338 // chromatin remodeling // inferred by curator /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006476 // protein deacetylation // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009913 // epidermal cell differentiation // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0010832 // negative regulation of myotube differentiation // inferred from mutant phenotype /// 0010870 // positive regulation of receptor biosynthetic process // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0016568 // chromatin modification // traceable author statement /// 0016575 // histone deacetylation // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042475 // odontogenesis of dentin-containing tooth // inferred from sequence or structural similarity /// 0042733 // embryonic digit morphogenesis // inferred from sequence or structural similarity /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043922 // negative regulation by host of viral transcription // inferred from mutant phenotype /// 0045786 // negative regulation of cell cycle // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from direct assay /// 0060789 // hair follicle placode formation // inferred from sequence or structural similarity /// 0061029 // eyelid development in camera-type eye // inferred from sequence or structural similarity /// 0061198 // fungiform papilla formation // inferred from sequence or structural similarity /// 0070932 // histone H3 deacetylation // inferred from direct assay /// 0070933 // histone H4 deacetylation // inferred from direct assay 0000118 // histone deacetylase complex // traceable author statement /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0016580 // Sin3 complex // inferred from direct assay /// 0016581 // NuRD complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001047 // core promoter binding // inferred from direct assay /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004407 // histone deacetylase activity // inferred from direct assay /// 0004407 // histone deacetylase activity // inferred from mutant phenotype /// 0004407 // histone deacetylase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019213 // deacetylase activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from physical interaction /// 0031078 // histone deacetylase activity (H3-K14 specific) // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0032041 // NAD-dependent histone deacetylase activity (H3-K14 specific) // inferred from electronic annotation /// 0032129 // histone deacetylase activity (H3-K9 specific) // inferred from electronic annotation /// 0033558 // protein deacetylase activity // inferred from direct assay /// 0033558 // protein deacetylase activity // inferred from mutant phenotype /// 0033613 // activating transcription factor binding // inferred from physical interaction /// 0034739 // histone deacetylase activity (H4-K16 specific) // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0046969 // NAD-dependent histone deacetylase activity (H3-K9 specific) // inferred from electronic annotation /// 0046970 // NAD-dependent histone deacetylase activity (H4-K16 specific) // inferred from electronic annotation /// 0051059 // NF-kappaB binding // inferred from physical interaction /// 0097372 // NAD-dependent histone deacetylase activity (H3-K18 specific) // inferred from electronic annotation 84.62 222.74 4.83 0.00 0.01 -4.46
214036_at 214036_at BE464799 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE464799 /FEA=EST /DB_XREF=gi:9510493 /DB_XREF=est:hs87a06.x1 /CLONE=IMAGE:3144178 /UG=Hs.27342 ESTs BE464799 ephrin-A5 EFNA5 1946 NM_001962 /// XM_006714565 0006915 // apoptotic process // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007411 // axon guidance // not recorded /// 0022407 // regulation of cell-cell adhesion // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0032314 // regulation of Rac GTPase activity // inferred from sequence or structural similarity /// 0032319 // regulation of Rho GTPase activity // inferred from direct assay /// 0032956 // regulation of actin cytoskeleton organization // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0051893 // regulation of focal adhesion assembly // inferred from direct assay /// 0061178 // regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0070507 // regulation of microtubule cytoskeleton organization // inferred from direct assay 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0031362 // anchored component of external side of plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0045499 // chemorepellent activity // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from physical interaction 46.55 116.33 4.83 0.00 0.01 -4.46
212760_at 212760_at AB002347 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB002347.1 /DEF=Human mRNA for KIAA0349 gene, partial cds. /FEA=mRNA /GEN=KIAA0349 /DB_XREF=gi:2224638 /UG=Hs.15303 KIAA0349 protein AB002347 ubiquitin protein ligase E3 component n-recognin 2 UBR2 23304 NM_001184801 /// NM_015255 /// XM_005248965 /// XM_005248966 0006342 // chromatin silencing // inferred from sequence or structural similarity /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0032007 // negative regulation of TOR signaling // inferred from mutant phenotype /// 0033522 // histone H2A ubiquitination // inferred from sequence or structural similarity /// 0071233 // cellular response to leucine // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070728 // leucine binding // inferred from direct assay 72.32 101.26 4.83 0.00 0.01 -4.46
213848_at 213848_at AI655015 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI655015 /FEA=EST /DB_XREF=gi:4738994 /DB_XREF=est:wb66a10.x1 /CLONE=IMAGE:2310618 /UG=Hs.3843 Homo sapiens mRNA; cDNA DKFZp586F2224 (from clone DKFZp586F2224) AI655015 dual specificity phosphatase 7 DUSP7 1849 NM_001947 0000188 // inactivation of MAPK activity // inferred from direct assay /// 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from direct assay 50.75 89.78 4.82 0.00 0.01 -4.46
212378_at 212378_at NM_000819 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_000819.1 /DEF=Homo sapiens phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase (GART), mRNA. /FEA=CDS /GEN=GART /PROD=phosphoribosylglycinamide formyltransferase,phosphoribosylglycinamide synthetase,phosphoribosylaminoimidazole synthetase /DB_XREF=gi:4503914 /UG=Hs.82285 phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase /FL=gb:NM_000819.1 NM_000819 phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase GART 2618 NM_000819 /// NM_001136005 /// NM_001136006 /// NM_175085 /// XM_005260941 /// XM_006723988 /// XM_006723989 /// XM_006723990 0003360 // brainstem development // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009113 // purine nucleobase biosynthetic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046654 // tetrahydrofolate biosynthetic process // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004637 // phosphoribosylamine-glycine ligase activity // inferred from electronic annotation /// 0004641 // phosphoribosylformylglycinamidine cyclo-ligase activity // inferred from electronic annotation /// 0004644 // phosphoribosylglycinamide formyltransferase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016742 // hydroxymethyl-, formyl- and related transferase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -77.50 159.03 -4.82 0.00 0.01 -4.46
31845_at 31845_at U32645 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U32645:Human myeloid elf-1 like factor (MEF) mRNA, complete cds /cds=(382,2373) /gb=U32645 /gi=1761934 /ug=Hs.151139 /len=4167 U32645 E74-like factor 4 (ets domain transcription factor) ELF4 2000 NM_001127197 /// NM_001421 /// XM_005262389 0001787 // natural killer cell proliferation // inferred from sequence or structural similarity /// 0001866 // NK T cell proliferation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -51.48 158.49 -4.82 0.00 0.01 -4.46
215096_s_at 215096_s_at AU145746 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU145746 /FEA=EST /DB_XREF=gi:11007267 /DB_XREF=est:AU145746 /CLONE=HEMBA1005679 /UG=Hs.82193 esterase Dformylglutathione hydrolase AU145746 esterase D ESD 2098 NM_001984 /// XM_005266278 0006508 // proteolysis // inferred from electronic annotation /// 0046294 // formaldehyde catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from direct assay /// 0018738 // S-formylglutathione hydrolase activity // inferred from electronic annotation /// 0047374 // methylumbelliferyl-acetate deacetylase activity // inferred from electronic annotation /// 0052689 // carboxylic ester hydrolase activity // non-traceable author statement 114.45 352.20 4.82 0.00 0.01 -4.46
203200_s_at 203200_s_at NM_024010 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024010.1 /DEF=Homo sapiens 5-methyltetrahydrofolate-homocysteine methyltransferase reductase (MTRR), transcript variant 2, mRNA. /FEA=mRNA /GEN=MTRR /PROD=methionine synthase reductase, isoform 2 /DB_XREF=gi:13325067 /UG=Hs.153792 5-methyltetrahydrofolate-homocysteine methyltransferase reductase /FL=gb:NM_024010.1 gb:AF121214.1 NM_024010 5-methyltetrahydrofolate-homocysteine methyltransferase reductase MTRR 4552 NM_002454 /// NM_024010 /// XM_006714474 /// XR_241702 /// XR_241703 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006306 // DNA methylation // inferred from sequence or structural similarity /// 0006555 // methionine metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009235 // cobalamin metabolic process // traceable author statement /// 0032259 // methylation // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046655 // folic acid metabolic process // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0003958 // NADPH-hemoprotein reductase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0010181 // FMN binding // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen // not recorded /// 0016723 // oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor // inferred from direct assay /// 0030586 // [methionine synthase] reductase activity // traceable author statement /// 0050660 // flavin adenine dinucleotide binding // inferred from direct assay /// 0050660 // flavin adenine dinucleotide binding // traceable author statement /// 0050661 // NADP binding // traceable author statement 45.10 76.03 4.82 0.00 0.01 -4.46
209143_s_at 209143_s_at AF005422 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF005422.1 /DEF=Homo sapiens reticulocyte pICln mRNA, complete cds. /FEA=mRNA /PROD=reticulocyte pICln /DB_XREF=gi:2209234 /UG=Hs.84974 chloride channel, nucleotide-sensitive, 1A /FL=gb:U53454.1 gb:AF005422.1 gb:AF026003.1 gb:NM_001293.1 gb:U17899.1 AF005422 chloride channel, nucleotide-sensitive, 1A CLNS1A 1207 NM_001293 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0006810 // transport // traceable author statement /// 0006821 // chloride transport // inferred from electronic annotation /// 0006884 // cell volume homeostasis // inferred from electronic annotation /// 0008015 // blood circulation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0034709 // methylosome // inferred from direct assay /// 0034715 // pICln-Sm protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 80.65 257.95 4.82 0.00 0.01 -4.46
209226_s_at 209226_s_at U72069 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U72069.1 /DEF=Human karyopherin beta2 mRNA, complete cds. /FEA=mRNA /PROD=karyopherin beta2 /DB_XREF=gi:1657775 /UG=Hs.168075 karyopherin (importin) beta 2 /FL=gb:U72069.1 gb:U72395.1 U72069 transportin 1 TNPO1 3842 NM_002270 /// NM_153188 /// XM_005248500 /// XM_005248501 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -427.40 954.40 -4.82 0.00 0.01 -4.46
211042_x_at 211042_x_at BC006329 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006329.1 /DEF=Homo sapiens, Similar to melanoma adhesion molecule, clone MGC:12808, mRNA, complete cds. /FEA=mRNA /PROD=Similar to melanoma adhesion molecule /DB_XREF=gi:13623456 /FL=gb:BC006329.1 BC006329 melanoma cell adhesion molecule /// microRNA 6756 MCAM /// MIR6756 4162 /// 102465453 NM_006500 /// NR_106814 /// XM_005271551 /// XM_005271552 /// XM_006718836 /// XM_006718837 /// XM_006718838 0003094 // glomerular filtration // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0061042 // vascular wound healing // inferred from expression pattern 0005886 // plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 82.68 104.59 4.81 0.00 0.01 -4.46
217759_at 217759_at BF431488 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF431488 /FEA=EST /DB_XREF=gi:11443602 /DB_XREF=est:7o14f01.x1 /CLONE=IMAGE:3574033 /UG=Hs.14512 DIPB protein /FL=gb:NM_017583.1 BF431488 tripartite motif containing 44 TRIM44 54765 NM_017583 /// XM_006718254 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 84.88 181.76 4.81 0.00 0.01 -4.46
209387_s_at 209387_s_at M90657 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M90657.1 /DEF=Human tumor antigen (L6) mRNA, complete cds. /FEA=mRNA /GEN=L6 /DB_XREF=gi:186803 /UG=Hs.3337 transmembrane 4 superfamily member 1 /FL=gb:M90657.1 M90657 transmembrane 4 L six family member 1 TM4SF1 4071 NM_014220 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 330.10 939.23 4.81 0.00 0.01 -4.46
201005_at 201005_at NM_001769 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001769.1 /DEF=Homo sapiens CD9 antigen (p24) (CD9), mRNA. /FEA=mRNA /GEN=CD9 /PROD=CD9 antigen (p24) /DB_XREF=gi:4502692 /UG=Hs.1244 CD9 antigen (p24) /FL=gb:M38690.1 gb:NM_001769.1 gb:L34068.1 NM_001769 CD9 molecule CD9 928 NM_001769 /// XM_005253814 0002576 // platelet degranulation // traceable author statement /// 0006928 // cellular component movement // inferred from direct assay /// 0007155 // cell adhesion // inferred from direct assay /// 0007338 // single fertilization // traceable author statement /// 0007342 // fusion of sperm to egg plasma membrane // inferred from direct assay /// 0007342 // fusion of sperm to egg plasma membrane // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009414 // response to water deprivation // inferred from electronic annotation /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0030168 // platelet activation // non-traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030913 // paranodal junction assembly // inferred from sequence or structural similarity /// 0032504 // multicellular organism reproduction // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 301.90 1177.03 4.80 0.00 0.01 -4.46
208987_s_at 208987_s_at AK024505 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024505.1 /DEF=Homo sapiens mRNA for FLJ00115 protein, partial cds. /FEA=mRNA /GEN=FLJ00115 /PROD=FLJ00115 protein /DB_XREF=gi:10440529 /UG=Hs.219614 f-box and leucine-rich repeat protein 11 /FL=gb:AF179221.1 AK024505 lysine (K)-specific demethylase 2A KDM2A 22992 NM_001256405 /// NM_012308 /// NR_027473 /// XM_006718479 /// XM_006718480 /// XM_006718481 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070544 // histone H3-K36 demethylation // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0045322 // unmethylated CpG binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation /// 0051864 // histone demethylase activity (H3-K36 specific) // inferred from electronic annotation -67.90 179.75 -4.80 0.00 0.01 -4.46
200031_s_at 200031_s_at NM_001015 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001015.1 /DEF=Homo sapiens ribosomal protein S11 (RPS11), mRNA. /FEA=mRNA /GEN=RPS11 /PROD=ribosomal protein S11 /DB_XREF=gi:4506680 /UG=Hs.182740 ribosomal protein S11 /FL=gb:NM_001015.1 NM_001015 ribosomal protein S11 /// small nucleolar RNA, C/D box 35B RPS11 /// SNORD35B 6205 /// 84546 NM_001015 /// NR_001285 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -553.03 3219.09 -4.80 0.00 0.01 -4.46
205507_at 205507_at NM_014958 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014958.1 /DEF=Homo sapiens KIAA0915 protein (KIAA0915), mRNA. /FEA=mRNA /GEN=KIAA0915 /PROD=KIAA0915 protein /DB_XREF=gi:7662377 /UG=Hs.16714 Rho guanine exchange factor (GEF) 15 /FL=gb:AB020722.1 gb:NM_014958.1 NM_014958 Rho guanine nucleotide exchange factor (GEF) 15 ARHGEF15 22899 NM_025014 /// NM_173728 /// XM_005256537 /// XM_006721474 0032319 // regulation of Rho GTPase activity // inferred from direct assay /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from direct assay /// 0051496 // positive regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0061299 // retina vasculature morphogenesis in camera-type eye // inferred from electronic annotation /// 2000297 // negative regulation of synapse maturation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 49.50 197.32 4.80 0.00 0.01 -4.46
211666_x_at 211666_x_at L22453 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L22453.1 /DEF=Homo sapiens HIV-1 TAR RNA binding protein (TARBP-b) mRNA, complete cds. /FEA=mRNA /GEN=TARBP-b /DB_XREF=gi:347963 /FL=gb:L22453.1 L22453 RNA, U86 small nucleolar /// ribosomal protein L3 /// small nucleolar RNA, C/D box 83B RNU86 /// RPL3 /// SNORD83B 6122 /// 116936 /// 116938 NM_000967 /// NM_001033853 /// NR_000026 /// NR_000028 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -1041.35 3036.80 -4.79 0.00 0.01 -4.46
201996_s_at 201996_s_at AL524033 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL524033 /FEA=EST /DB_XREF=gi:12787526 /DB_XREF=est:AL524033 /CLONE=CS0DC003YL08 (3 prime) /UG=Hs.184245 KIAA0929 protein Msx2 interacting nuclear target (MINT) homolog /FL=gb:NM_015001.1 AL524033 spen family transcriptional repressor SPEN 23013 NM_015001 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0001191 // RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -49.40 91.38 -4.79 0.00 0.01 -4.46
200711_s_at 200711_s_at NM_003197 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003197.2 /DEF=Homo sapiens transcription elongation factor B (SIII), polypeptide 1-like (TCEB1L), mRNA. /FEA=mRNA /GEN=TCEB1L /PROD=transcription elongation factor B polypeptide1-like /DB_XREF=gi:6006030 /UG=Hs.171626 transcription elongation factor B (SIII), polypeptide 1-like /FL=gb:NM_003197.2 NM_003197 S-phase kinase-associated protein 1 SKP1 6500 NM_006930 /// NM_170679 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0035518 // histone H2A monoubiquitination // inferred from direct assay /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay /// 0031467 // Cul7-RING ubiquitin ligase complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 88.33 458.96 4.79 0.00 0.01 -4.46
212370_x_at 212370_x_at AL080183 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080183.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434O171 (from clone DKFZp434O171); partial cds. /FEA=mRNA /GEN=DKFZp434O171 /PROD=hypothetical protein /DB_XREF=gi:5262659 /UG=Hs.13273 KIAA0592 protein AL080183 family with sequence similarity 21, member A /// family with sequence similarity 21, member C /// uncharacterized LOC101930591 FAM21A /// FAM21C /// LOC101930591 253725 /// 387680 /// 101930591 NM_001005751 /// NM_001169106 /// NM_001169107 /// NM_001291398 /// NM_015262 /// NM_018232 /// XM_005269805 /// XM_005269806 /// XM_005269807 /// XM_005269808 /// XM_005269810 /// XM_006717831 /// XM_006717832 /// XR_247516 0006810 // transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype /// 0042147 // retrograde transport, endosome to Golgi // inferred from sequence or structural similarity 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0071203 // WASH complex // inferred from direct assay /// 0071203 // WASH complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction -60.15 297.25 -4.79 0.00 0.01 -4.46
212790_x_at 212790_x_at BF942308 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF942308 /FEA=EST /DB_XREF=gi:12359628 /DB_XREF=est:nae91f11.x1 /CLONE=IMAGE:4119332 /UG=Hs.119122 ribosomal protein L13a BF942308 ribosomal protein L13a /// ribosomal protein L13a pseudogene 5 /// small nucleolar RNA, C/D box 32A /// small nucleolar RNA, C/D box 33 /// small nucleolar RNA, C/D box 34 /// small nucleolar RNA, C/D box 35A RPL13A /// RPL13AP5 /// SNORD32A /// SNORD33 /// SNORD34 /// SNORD35A 23521 /// 26816 /// 26817 /// 26818 /// 26819 /// 728658 NM_001270491 /// NM_012423 /// NR_000018 /// NR_000019 /// NR_000020 /// NR_000021 /// NR_026712 /// NR_073024 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071346 // cellular response to interferon-gamma // inferred from direct assay /// 1901194 // negative regulation of formation of translation preinitiation complex // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -908.10 4532.43 -4.79 0.00 0.01 -4.46
218181_s_at 218181_s_at NM_017792 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017792.1 /DEF=Homo sapiens hypothetical protein FLJ20373 (FLJ20373), mRNA. /FEA=mRNA /GEN=FLJ20373 /PROD=hypothetical protein FLJ20373 /DB_XREF=gi:8923351 /UG=Hs.6631 hypothetical protein FLJ20373 /FL=gb:NM_017792.1 NM_017792 mitogen-activated protein kinase kinase kinase kinase 4 MAP4K4 9448 NM_001242559 /// NM_001242560 /// NM_004834 /// NM_145686 /// NM_145687 /// XM_005264044 /// XM_005264045 /// XM_005264046 /// XM_005264047 /// XM_005264048 /// XM_005264049 /// XM_005264050 /// XM_005264052 /// XM_005264053 /// XM_005264054 /// XM_005264055 /// XM_005264056 /// XM_005264057 /// XM_005264058 /// XM_005264059 /// XM_005264060 /// XM_005264061 /// XM_005264062 /// XM_005264063 /// XM_005264064 /// XM_005264065 /// XM_005264066 /// XM_005264068 /// XM_005264069 /// XM_005264071 /// XM_006712864 /// XM_006712865 /// XM_006712866 /// XM_006712867 /// XM_006712868 /// XM_006712869 0006468 // protein phosphorylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0046328 // regulation of JNK cascade // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 71.53 196.31 4.79 0.00 0.01 -4.46
204127_at 204127_at BC000149 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000149.2 /DEF=Homo sapiens, replication factor C (activator 1) 3 (38kD), clone MGC:5276, mRNA, complete cds. /FEA=mRNA /PROD=replication factor C (activator 1) 3 (38kD) /DB_XREF=gi:12803002 /UG=Hs.115474 replication factor C (activator 1) 3 (38kD) /FL=gb:BC000149.2 gb:L07541.1 gb:NM_002915.1 BC000149 replication factor C (activator 1) 3, 38kDa RFC3 5983 NM_002915 /// NM_181558 0000278 // mitotic cell cycle // traceable author statement /// 0000722 // telomere maintenance via recombination // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0000731 // DNA synthesis involved in DNA repair // traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006260 // DNA replication // inferred from direct assay /// 0006260 // DNA replication // traceable author statement /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006297 // nucleotide-excision repair, DNA gap filling // traceable author statement /// 0032201 // telomere maintenance via semi-conservative replication // traceable author statement /// 0046683 // response to organophosphorus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005663 // DNA replication factor C complex // inferred from direct assay /// 0005663 // DNA replication factor C complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003689 // DNA clamp loader activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 73.42 82.16 4.78 0.00 0.01 -4.46
209112_at 209112_at BC001971 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001971.1 /DEF=Homo sapiens, Similar to cyclin-dependent kinase inhibitor 1B (p27, Kip1), clone MGC:5304, mRNA, complete cds. /FEA=mRNA /PROD=Similar to cyclin-dependent kinase inhibitor 1B(p27, Kip1) /DB_XREF=gi:12805034 /UG=Hs.238990 cyclin-dependent kinase inhibitor 1B (p27, Kip1) /FL=gb:BC001971.1 gb:NM_004064.1 gb:U10906.1 gb:AF247551.1 gb:AY004255.1 BC001971 cyclin-dependent kinase inhibitor 1B (p27, Kip1) CDKN1B 1027 NM_004064 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0000082 // G1/S transition of mitotic cell cycle // inferred from direct assay /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0031116 // positive regulation of microtubule polymerization // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033673 // negative regulation of kinase activity // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042326 // negative regulation of phosphorylation // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048102 // autophagic cell death // inferred from direct assay /// 0048839 // inner ear development // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0051271 // negative regulation of cellular component movement // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // inferred from electronic annotation /// 0071285 // cellular response to lithium ion // inferred from direct assay /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071850 // mitotic cell cycle arrest // inferred from direct assay /// 0071901 // negative regulation of protein serine/threonine kinase activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004861 // cyclin-dependent protein serine/threonine kinase inhibitor activity // inferred from electronic annotation /// 0005072 // transforming growth factor beta receptor, cytoplasmic mediator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation -108.82 220.76 -4.78 0.00 0.01 -4.46
204094_s_at 204094_s_at NM_014779 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014779.1 /DEF=Homo sapiens KIAA0669 gene product (KIAA0669), mRNA. /FEA=mRNA /GEN=KIAA0669 /PROD=KIAA0669 gene product /DB_XREF=gi:7662235 /UG=Hs.52526 KIAA0669 gene product /FL=gb:AB014569.1 gb:NM_014779.1 NM_014779 TSC22 domain family, member 2 TSC22D2 9819 NM_014779 /// XM_005247920 /// XR_427388 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 83.00 158.25 4.78 0.00 0.01 -4.46
201145_at 201145_at NM_006118 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006118.2 /DEF=Homo sapiens HS1 binding protein (HAX1), mRNA. /FEA=mRNA /GEN=HAX1 /PROD=HS1 binding protein /DB_XREF=gi:13435355 /UG=Hs.15318 HS1 binding protein /FL=gb:NM_006118.2 gb:BC005240.1 gb:U68566.1 NM_006118 HCLS1 associated protein X-1 HAX1 10456 NM_001018837 /// NM_006118 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from mutant phenotype /// 0030833 // regulation of actin filament polymerization // inferred from mutant phenotype /// 0030854 // positive regulation of granulocyte differentiation // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0071345 // cellular response to cytokine stimulus // inferred from mutant phenotype /// 2000251 // positive regulation of actin cytoskeleton reorganization // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019966 // interleukin-1 binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay -131.80 315.10 -4.77 0.00 0.01 -4.46
209609_s_at 209609_s_at BC004517 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004517.1 /DEF=Homo sapiens, Similar to RIKEN cDNA C330013D18 gene, clone MGC:11226, mRNA, complete cds. /FEA=mRNA /PROD=Similar to RIKEN cDNA C330013D18 gene /DB_XREF=gi:13325435 /UG=Hs.288936 Homo sapiens, Similar to RIKEN cDNA C330013D18 gene, clone MGC:11226, mRNA, complete cds /FL=gb:BC004517.1 BC004517 mitochondrial ribosomal protein L9 MRPL9 65005 NM_031420 /// XM_005245455 0006412 // translation // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005761 // mitochondrial ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 65.18 229.34 4.77 0.00 0.01 -4.46
212138_at 212138_at AK021757 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK021757.1 /DEF=Homo sapiens cDNA FLJ11695 fis, clone HEMBA1005019, highly similar to Homo sapiens mRNA for KIAA0648 protein. /FEA=mRNA /DB_XREF=gi:10433003 /UG=Hs.31921 KIAA0648 protein AK021757 PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) PDS5A 23244 NM_001100399 /// NM_001100400 /// NM_015200 /// XM_005262652 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -83.00 307.25 -4.77 0.00 0.01 -4.46
214435_x_at 214435_x_at NM_005402 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005402.1 /DEF=Homo sapiens v-ral simian leukemia viral oncogene homolog A (ras related) (RALA), mRNA. /FEA=CDS /GEN=RALA /PROD=v-ral simian leukemia viral oncogene homolog A(ras related) /DB_XREF=gi:4885568 /UG=Hs.288757 v-ral simian leukemia viral oncogene homolog A (ras related) /FL=gb:M29893.1 gb:NM_005402.1 NM_005402 v-ral simian leukemia viral oncogene homolog A (ras related) RALA 5898 NM_005402 /// XM_006715762 /// XM_006715763 0000910 // cytokinesis // inferred from direct assay /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0017157 // regulation of exocytosis // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // inferred from direct assay /// 0051665 // membrane raft localization // inferred from direct assay /// 0061024 // membrane organization // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030496 // midbody // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0032154 // cleavage furrow // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0031755 // Edg-2 lysophosphatidic acid receptor binding // inferred from direct assay -238.48 960.49 -4.77 0.00 0.01 -4.46
217916_s_at 217916_s_at NM_016623 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016623.1 /DEF=Homo sapiens hypothetical protein (BM-009), mRNA. /FEA=mRNA /GEN=BM-009 /PROD=hypothetical protein /DB_XREF=gi:7705303 /UG=Hs.92918 hypothetical protein /FL=gb:BC003599.1 gb:AF208851.1 gb:NM_016623.1 NM_016623 family with sequence similarity 49, member B FAM49B 51571 NM_001256763 /// NM_016623 /// NR_046359 /// NR_046360 /// NR_046361 /// XM_005250966 /// XM_006716582 /// XM_006716583 0005929 // cilium // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 67.60 213.32 4.77 0.00 0.01 -4.46
212267_at 212267_at D87450 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D87450.1 /DEF=Human mRNA for KIAA0261 gene, partial cds. /FEA=mRNA /GEN=KIAA0261 /DB_XREF=gi:1665788 /UG=Hs.154978 KIAA0261 protein D87450 wings apart-like homolog (Drosophila) WAPAL 23063 NM_015045 /// XM_006717726 /// XM_006717727 /// XM_006717728 /// XM_006717729 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0035562 // negative regulation of chromatin binding // inferred from mutant phenotype /// 0045875 // negative regulation of sister chromatid cohesion // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0071168 // protein localization to chromatin // inferred from mutant phenotype /// 0071922 // regulation of cohesin localization to chromatin // inferred from mutant phenotype 0000775 // chromosome, centromeric region // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0000795 // synaptonemal complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008278 // cohesin complex // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 52.20 91.88 4.77 0.00 0.01 -4.46
215535_s_at 215535_s_at AF007145 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF007145.1 /DEF=Homo sapiens clone 23552 unknown mRNA, partial cds. /FEA=mRNA /PROD=unknown /DB_XREF=gi:2852622 /UG=Hs.240534 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) AF007145 1-acylglycerol-3-phosphate O-acyltransferase 1 AGPAT1 10554 NM_006411 /// NM_032741 /// XM_005248805 /// XM_005248806 /// XM_005272761 /// XM_005272762 /// XM_005274829 /// XM_005274830 /// XM_005275073 /// XM_005275074 /// XM_005275203 /// XM_005275204 /// XM_005275337 /// XM_005275338 /// XM_005275504 /// XM_005275505 0001819 // positive regulation of cytokine production // inferred from mutant phenotype /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred by curator /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006654 // phosphatidic acid biosynthetic process // inferred from genetic interaction /// 0006654 // phosphatidic acid biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0016024 // CDP-diacylglycerol biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0031325 // positive regulation of cellular metabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from genetic interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 45.72 136.49 4.76 0.00 0.01 -4.46
213080_x_at 213080_x_at BF214492 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF214492 /FEA=EST /DB_XREF=gi:11108078 /DB_XREF=est:601845736F1 /CLONE=IMAGE:4076600 /UG=Hs.180946 ribosomal protein L5 BF214492 ribosomal protein L5 /// small nucleolar RNA, C/D box 21 RPL5 /// SNORD21 6083 /// 6125 NM_000969 /// NR_000006 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008097 // 5S rRNA binding // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -388.15 2259.40 -4.76 0.00 0.01 -4.46
205282_at 205282_at NM_004631 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004631.1 /DEF=Homo sapiens low density lipoprotein receptor-related protein 8, apolipoprotein e receptor (LRP8), mRNA. /FEA=mRNA /GEN=LRP8 /PROD=low density lipoprotein receptor-related protein8, apolipoprotein e receptor /DB_XREF=gi:4758687 /UG=Hs.54481 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor /FL=gb:D50678.1 gb:NM_004631.1 NM_004631 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor LRP8 7804 NM_001018054 /// NM_004631 /// NM_017522 /// NM_033300 /// XM_005271173 /// XM_005271174 /// XM_005271175 /// XM_005271176 /// XM_006710881 /// XM_006710882 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001523 // retinoid metabolic process // traceable author statement /// 0006508 // proteolysis // non-traceable author statement /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006897 // endocytosis // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // non-traceable author statement /// 0021541 // ammon gyrus development // inferred from sequence or structural similarity /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021819 // layer formation in cerebral cortex // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0032793 // positive regulation of CREB transcription factor activity // inferred from sequence or structural similarity /// 0038026 // reelin-mediated signaling pathway // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0050804 // regulation of synaptic transmission // inferred from sequence or structural similarity /// 0061003 // positive regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from sequence or structural similarity /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071397 // cellular response to cholesterol // inferred from electronic annotation /// 1900006 // positive regulation of dendrite development // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred by curator /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008035 // high-density lipoprotein particle binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0030229 // very-low-density lipoprotein particle receptor activity // inferred from direct assay /// 0034185 // apolipoprotein binding // inferred by curator /// 0038025 // reelin receptor activity // inferred from sequence or structural similarity 39.08 49.91 4.76 0.00 0.01 -4.46
33768_at 33768_at L19267 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. L19267:Homo sapiens 59 protein mRNA, 3 end /cds=(0,1661) /gb=L19267 /gi=306711 /ug=Hs.198836 /len=2894 L19267 dystrophia myotonica, WD repeat containing DMWD 1762 NM_004943 0007126 // meiotic nuclear division // non-traceable author statement 0005515 // protein binding // inferred from electronic annotation 63.15 199.03 4.76 0.00 0.01 -4.46
203454_s_at 203454_s_at NM_004045 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004045.1 /DEF=Homo sapiens ATX1 (antioxidant protein 1, yeast) homolog 1 (ATOX1), mRNA. /FEA=mRNA /GEN=ATOX1 /PROD=ATX1 (antioxidant protein 1, yeast) homolog 1 /DB_XREF=gi:4757803 /UG=Hs.279910 ATX1 (antioxidant protein 1, yeast) homolog 1 /FL=gb:NM_004045.1 NM_004045 antioxidant 1 copper chaperone ATOX1 475 NM_004045 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // traceable author statement /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0005507 // copper ion binding // inferred from direct assay /// 0016530 // metallochaperone activity // traceable author statement /// 0016531 // copper chaperone activity // inferred from direct assay /// 0032767 // copper-dependent protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 45.85 196.28 4.76 0.00 0.01 -4.46
221970_s_at 221970_s_at AU158148 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU158148 /FEA=EST /DB_XREF=gi:11019669 /DB_XREF=est:AU158148 /CLONE=PLACE1011221 /UG=Hs.321105 Homo sapiens cDNA: FLJ21737 fis, clone COLF3396 AU158148 nucleolar protein 11 NOL11 25926 NM_015462 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0030490 // maturation of SSU-rRNA // inferred from mutant phenotype /// 1901838 // positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0034455 // t-UTP complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 65.58 195.44 4.76 0.00 0.01 -4.46
212780_at 212780_at AA700167 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA700167 /FEA=EST /DB_XREF=gi:2703130 /DB_XREF=est:zj36h12.s1 /CLONE=IMAGE:452423 /UG=Hs.326392 son of sevenless (Drosophila) homolog 1 /FL=gb:L13857.1 AA700167 son of sevenless homolog 1 (Drosophila) SOS1 6654 NM_005633 /// XM_005264515 0007165 // signal transduction // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0032318 // regulation of Ras GTPase activity // not recorded /// 0032318 // regulation of Ras GTPase activity // traceable author statement /// 0032319 // regulation of Rho GTPase activity // traceable author statement /// 0032320 // positive regulation of Ras GTPase activity // /// 0032320 // positive regulation of Ras GTPase activity // inferred from electronic annotation /// 0032320 // positive regulation of Ras GTPase activity // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // traceable author statement /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051057 // positive regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005088 // Ras guanyl-nucleotide exchange factor activity // not recorded /// 0005088 // Ras guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -61.35 129.05 -4.75 0.00 0.01 -4.46
203499_at 203499_at NM_004431 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004431.1 /DEF=Homo sapiens EphA2 (EPHA2), mRNA. /FEA=mRNA /GEN=EPHA2 /PROD=EphA2 /DB_XREF=gi:4758277 /UG=Hs.171596 EphA2 /FL=gb:M59371.1 gb:NM_004431.1 NM_004431 EPH receptor A2 EPHA2 1969 NM_004431 /// XM_005245751 /// XM_005245752 0001501 // skeletal system development // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from direct assay /// 0010591 // regulation of lamellipodium assembly // inferred from mutant phenotype /// 0014028 // notochord formation // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from mutant phenotype /// 0030316 // osteoclast differentiation // inferred from sequence or structural similarity /// 0032863 // activation of Rac GTPase activity // inferred from mutant phenotype /// 0033598 // mammary gland epithelial cell proliferation // inferred from sequence or structural similarity /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0036342 // post-anal tail morphogenesis // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from direct assay /// 0043535 // regulation of blood vessel endothelial cell migration // inferred from sequence or structural similarity /// 0045765 // regulation of angiogenesis // inferred from sequence or structural similarity /// 0046849 // bone remodeling // inferred from sequence or structural similarity /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048320 // axial mesoderm formation // inferred from electronic annotation /// 0048570 // notochord morphogenesis // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling // inferred from direct assay /// 0060035 // notochord cell development // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from mutant phenotype /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from sequence or structural similarity /// 0070309 // lens fiber cell morphogenesis // inferred from sequence or structural similarity /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0070848 // response to growth factor // inferred from mutant phenotype /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031256 // leading edge membrane // inferred from direct assay /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -125.62 424.61 -4.75 0.00 0.01 -4.46
201397_at 201397_at NM_006623 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006623.1 /DEF=Homo sapiens phosphoglycerate dehydrogenase (PHGDH), mRNA. /FEA=mRNA /GEN=PHGDH /PROD=phosphoglycerate dehydrogenase /DB_XREF=gi:5729973 /UG=Hs.3343 phosphoglycerate dehydrogenase /FL=gb:BC000303.1 gb:BC001349.1 gb:AF006043.1 gb:NM_006623.1 gb:AF171237.1 NM_006623 phosphoglycerate dehydrogenase PHGDH 26227 NM_006623 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0006563 // L-serine metabolic process // inferred from electronic annotation /// 0006564 // L-serine biosynthetic process // traceable author statement /// 0006566 // threonine metabolic process // inferred from electronic annotation /// 0007420 // brain development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0009448 // gamma-aminobutyric acid metabolic process // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0019530 // taurine metabolic process // inferred from electronic annotation /// 0021510 // spinal cord development // inferred from electronic annotation /// 0021782 // glial cell development // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022402 // cell cycle process // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070314 // G1 to G0 transition // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004617 // phosphoglycerate dehydrogenase activity // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation -58.07 69.09 -4.75 0.00 0.01 -4.46
220615_s_at 220615_s_at NM_018099 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018099.1 /DEF=Homo sapiens hypothetical protein FLJ10462 (FLJ10462), mRNA. /FEA=mRNA /GEN=FLJ10462 /PROD=hypothetical protein FLJ10462 /DB_XREF=gi:8922433 /UG=Hs.100895 hypothetical protein FLJ10462 /FL=gb:AL136843.1 gb:NM_018099.1 NM_018099 fatty acyl CoA reductase 2 FAR2 55711 NM_001271783 /// NM_001271784 /// NM_018099 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008611 // ether lipid biosynthetic process // traceable author statement /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0035336 // long-chain fatty-acyl-CoA metabolic process // inferred from direct assay /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005782 // peroxisomal matrix // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0050062 // long-chain-fatty-acyl-CoA reductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0080019 // fatty-acyl-CoA reductase (alcohol-forming) activity // inferred from direct assay 75.82 229.81 4.75 0.00 0.01 -4.46
204612_at 204612_at NM_006823 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006823.1 /DEF=Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor alpha (PKIA), mRNA. /FEA=mRNA /GEN=PKIA /PROD=protein kinase, cAMP-dependent, catalytic,inhibitor alpha /DB_XREF=gi:5803126 /UG=Hs.75209 protein kinase (cAMP-dependent, catalytic) inhibitor alpha /FL=gb:NM_006823.1 NM_006823 protein kinase (cAMP-dependent, catalytic) inhibitor alpha PKIA 5569 NM_006823 /// NM_181839 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0042308 // negative regulation of protein import into nucleus // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0071901 // negative regulation of protein serine/threonine kinase activity // inferred from electronic annotation /// 2000480 // negative regulation of cAMP-dependent protein kinase activity // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from direct assay /// 0004862 // cAMP-dependent protein kinase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction -113.45 514.75 -4.75 0.00 0.01 -4.46
203940_s_at 203940_s_at NM_014909 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014909.1 /DEF=Homo sapiens KIAA1036 protein (KIAA1036), mRNA. /FEA=mRNA /GEN=KIAA1036 /PROD=KIAA1036 protein /DB_XREF=gi:7662453 /UG=Hs.155182 KIAA1036 protein /FL=gb:AB028959.1 gb:NM_014909.1 NM_014909 vasohibin 1 VASH1 22846 NM_014909 /// XM_006720080 0001525 // angiogenesis // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0009611 // response to wounding // inferred from direct assay /// 0010596 // negative regulation of endothelial cell migration // inferred from genetic interaction /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from genetic interaction /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 1901491 // negative regulation of lymphangiogenesis // inferred from genetic interaction /// 2000772 // regulation of cellular senescence // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 53.30 63.35 4.75 0.00 0.01 -4.46
209849_s_at 209849_s_at AF029669 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF029669.1 /DEF=Homo sapiens Rad51C (RAD51C) mRNA, complete cds. /FEA=mRNA /GEN=RAD51C /PROD=Rad51C /DB_XREF=gi:2909800 /UG=Hs.11393 RAD51 (S. cerevisiae) homolog C /FL=gb:AF029669.1 AF029669 RAD51 paralog C RAD51C 5889 NM_002876 /// NM_058216 /// NR_103872 /// NR_103873 /// XM_006722001 /// XM_006722002 /// XM_006722003 /// XM_006722004 /// XM_006722005 /// XM_006722006 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0000737 // DNA catabolic process, endonucleolytic // inferred from mutant phenotype /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from direct assay /// 0006310 // DNA recombination // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // inferred from sequence or structural similarity /// 0007066 // female meiosis sister chromatid cohesion // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // inferred from electronic annotation /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005657 // replication fork // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0033063 // Rad51B-Rad51C-Rad51D-XRCC2 complex // inferred from direct assay /// 0033065 // Rad51C-XRCC3 complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048476 // Holliday junction resolvase complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000400 // four-way junction DNA binding // inferred from direct assay /// 0003677 // DNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008821 // crossover junction endodeoxyribonuclease activity // inferred from mutant phenotype /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 60.95 106.38 4.74 0.00 0.01 -4.46
211302_s_at 211302_s_at L20966 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L20966.1 /DEF=Human phosphodiesterase mRNA, complete cds. /FEA=mRNA /PROD=phosphodiesterase /DB_XREF=gi:347121 /UG=Hs.188 phosphodiesterase 4B, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E4) /FL=gb:L20966.1 L20966 phosphodiesterase 4B, cAMP-specific PDE4B 5142 NM_001037339 /// NM_001037340 /// NM_001037341 /// NM_001297440 /// NM_001297441 /// NM_001297442 /// NM_002600 /// XM_005270923 /// XM_005270924 /// XM_005270925 /// XM_005270926 /// XM_006710680 0001780 // neutrophil homeostasis // inferred from sequence or structural similarity /// 0006198 // cAMP catabolic process // inferred from direct assay /// 0006198 // cAMP catabolic process // inferred from electronic annotation /// 0006198 // cAMP catabolic process // inferred from genetic interaction /// 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0032729 // positive regulation of interferon-gamma production // inferred from mutant phenotype /// 0032743 // positive regulation of interleukin-2 production // inferred from mutant phenotype /// 0035690 // cellular response to drug // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // inferred from mutant phenotype /// 0050900 // leukocyte migration // inferred from sequence or structural similarity /// 0071222 // cellular response to lipopolysaccharide // inferred from sequence or structural similarity /// 0071872 // cellular response to epinephrine stimulus // inferred from sequence or structural similarity /// 0086004 // regulation of cardiac muscle cell contraction // inferred from sequence or structural similarity /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 1901898 // negative regulation of relaxation of cardiac muscle // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005891 // voltage-gated calcium channel complex // inferred from sequence or structural similarity /// 0030018 // Z disc // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0071944 // cell periphery // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from sequence or structural similarity /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from genetic interaction /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from genetic interaction /// 0044325 // ion channel binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -150.27 355.39 -4.74 0.00 0.01 -4.46
206765_at 206765_at AF153820 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF153820.1 /DEF=Homo sapiens inwardly-rectifying potassium channel Kir2.1 (KCNJ2) mRNA, complete cds. /FEA=mRNA /GEN=KCNJ2 /PROD=inwardly-rectifying potassium channel Kir2.1 /DB_XREF=gi:8132296 /UG=Hs.1547 potassium inwardly-rectifying channel, subfamily J, member 2 /FL=gb:AF011904.1 gb:AF021139.1 gb:NM_000891.1 gb:U16861.1 gb:U12507.1 gb:U22413.1 gb:AF153820.1 gb:U24055.1 AF153820 potassium inwardly-rectifying channel, subfamily J, member 2 KCNJ2 3759 NM_000891 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0007268 // synaptic transmission // traceable author statement /// 0010107 // potassium ion import // inferred from direct assay /// 0014861 // regulation of skeletal muscle contraction via regulation of action potential // inferred from mutant phenotype /// 0015693 // magnesium ion transport // inferred from electronic annotation /// 0030007 // cellular potassium ion homeostasis // traceable author statement /// 0034765 // regulation of ion transmembrane transport // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from direct assay /// 0055119 // relaxation of cardiac muscle // inferred from mutant phenotype /// 0060075 // regulation of resting membrane potential // traceable author statement /// 0060306 // regulation of membrane repolarization // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071805 // potassium ion transmembrane transport // inferred from direct assay /// 0086001 // cardiac muscle cell action potential // inferred from electronic annotation /// 0086002 // cardiac muscle cell action potential involved in contraction // inferred from mutant phenotype /// 0086004 // regulation of cardiac muscle cell contraction // inferred from electronic annotation /// 0086011 // membrane repolarization during action potential // inferred from mutant phenotype /// 0086012 // membrane depolarization during cardiac muscle cell action potential // traceable author statement /// 0086013 // membrane repolarization during cardiac muscle cell action potential // inferred from mutant phenotype /// 0086013 // membrane repolarization during cardiac muscle cell action potential // traceable author statement /// 0086091 // regulation of heart rate by cardiac conduction // inferred from mutant phenotype /// 0090076 // relaxation of skeletal muscle // inferred from mutant phenotype /// 1901381 // positive regulation of potassium ion transmembrane transport // inferred from electronic annotation 0005790 // smooth endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation 0005242 // inward rectifier potassium channel activity // inferred from direct assay /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from electronic annotation /// 0086008 // voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization // inferred from mutant phenotype -51.60 100.60 -4.74 0.00 0.01 -4.46
202759_s_at 202759_s_at BE879367 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE879367 /FEA=EST /DB_XREF=gi:10328143 /DB_XREF=est:601484628F1 /CLONE=IMAGE:3887262 /UG=Hs.42322 A kinase (PRKA) anchor protein 2 /FL=gb:AB023137.1 gb:NM_007203.1 BE879367 A kinase (PRKA) anchor protein 2 /// PALM2-AKAP2 readthrough AKAP2 /// PALM2-AKAP2 11217 /// 445815 NM_001004065 /// NM_001136562 /// NM_001198656 /// NM_007203 /// NM_147150 0008360 // regulation of cell shape // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0016301 // kinase activity // inferred from electronic annotation /// 0019899 // enzyme binding // non-traceable author statement -424.67 1264.76 -4.74 0.00 0.01 -4.46
214329_x_at 214329_x_at AW474434 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW474434 /FEA=EST /DB_XREF=gi:7044540 /DB_XREF=est:xs95h07.x1 /CLONE=IMAGE:2777437 /UG=Hs.301527 ESTs, Moderately similar to unknown H.sapiens AW474434 tumor necrosis factor (ligand) superfamily, member 10 TNFSF10 8743 NM_001190942 /// NM_001190943 /// NM_003810 /// NR_033994 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008584 // male gonad development // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032813 // tumor necrosis factor receptor superfamily binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -58.60 60.80 -4.74 0.00 0.01 -4.46
201803_at 201803_at NM_000938 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000938.1 /DEF=Homo sapiens polymerase (RNA) II (DNA directed) polypeptide B (140kD) (POLR2B), mRNA. /FEA=mRNA /GEN=POLR2B /PROD=polymerase (RNA) II (DNA directed) polypeptide B(140kD) /DB_XREF=gi:4505940 /UG=Hs.296014 polymerase (RNA) II (DNA directed) polypeptide B (140kD) /FL=gb:NM_000938.1 NM_000938 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa POLR2B 5431 NM_000938 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0001055 // RNA polymerase II activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0032549 // ribonucleoside binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 121.55 570.80 4.74 0.00 0.01 -4.46
218265_at 218265_at NM_024077 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024077.1 /DEF=Homo sapiens hypothetical protein MGC3156 (MGC3156), mRNA. /FEA=mRNA /GEN=MGC3156 /PROD=hypothetical protein MGC3156 /DB_XREF=gi:13129065 /UG=Hs.288141 hypothetical protein MGC3156 /FL=gb:AL136881.1 gb:NM_024077.1 NM_024077 SECIS binding protein 2 SECISBP2 79048 NM_001282688 /// NM_001282689 /// NM_001282690 /// NM_024077 /// XM_005252193 /// XM_005252195 /// XM_005252196 /// XM_005252198 /// XM_005252202 /// XM_006717282 /// XR_428537 0006412 // translation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0035368 // selenocysteine insertion sequence binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 39.88 37.74 4.74 0.00 0.01 -4.46
219192_at 219192_at NM_018449 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018449.1 /DEF=Homo sapiens AD-012 protein (LOC55833), mRNA. /FEA=mRNA /GEN=LOC55833 /PROD=AD-012 protein /DB_XREF=gi:8923858 /UG=Hs.14953 AD-012 protein /FL=gb:AF157327.1 gb:NM_018449.1 NM_018449 ubiquitin associated protein 2 UBAP2 55833 NM_001282529 /// NM_001282530 /// NM_018449 /// NM_020867 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 48.92 128.44 4.74 0.00 0.01 -4.46
210612_s_at 210612_s_at AF318616 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF318616.1 /DEF=Homo sapiens synaptojanin 2 mRNA, complete cds. /FEA=mRNA /PROD=synaptojanin 2 /DB_XREF=gi:12034891 /UG=Hs.61289 synaptojanin 2 /FL=gb:AF318616.1 AF318616 synaptojanin 2 SYNJ2 8871 NM_001178088 /// NM_003898 /// XM_005267197 /// XM_005267198 /// XM_005267199 /// XM_005267200 /// XM_006715591 /// XM_006715592 /// XR_245556 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046856 // phosphatidylinositol dephosphorylation // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042578 // phosphoric ester hydrolase activity // inferred from electronic annotation -130.52 199.06 -4.73 0.00 0.01 -4.46
211919_s_at 211919_s_at AF348491 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF348491.1 /DEF=Homo sapiens chemokine receptor CXCR4 mRNA, complete cds. /FEA=CDS /PROD=chemokine receptor CXCR4 /DB_XREF=gi:13549089 /FL=gb:AF348491.1 AF348491 chemokine (C-X-C motif) receptor 4 CXCR4 7852 NM_001008540 /// NM_003467 0000187 // activation of MAPK activity // traceable author statement /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0002407 // dendritic cell chemotaxis // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007204 // positive regulation of cytosolic calcium ion concentration // traceable author statement /// 0007281 // germ cell development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008045 // motor neuron axon guidance // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from mutant phenotype /// 0030260 // entry into host cell // traceable author statement /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042119 // neutrophil activation // inferred from electronic annotation /// 0043217 // myelin maintenance // inferred from sequence or structural similarity /// 0048699 // generation of neurons // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0050920 // regulation of chemotaxis // inferred from mutant phenotype /// 0061351 // neural precursor cell proliferation // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // non-traceable author statement /// 0071345 // cellular response to cytokine stimulus // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004950 // chemokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015026 // coreceptor activity // traceable author statement /// 0016494 // C-X-C chemokine receptor activity // non-traceable author statement /// 0019955 // cytokine binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032027 // myosin light chain binding // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay -139.08 444.34 -4.73 0.00 0.01 -4.46
219405_at 219405_at NM_018073 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018073.1 /DEF=Homo sapiens hypothetical protein FLJ10369 (FLJ10369), mRNA. /FEA=mRNA /GEN=FLJ10369 /PROD=hypothetical protein FLJ10369 /DB_XREF=gi:8922379 /UG=Hs.53940 hypothetical protein FLJ10369 /FL=gb:NM_018073.1 NM_018073 tripartite motif containing 68 TRIM68 55128 NM_018073 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0060765 // regulation of androgen receptor signaling pathway // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from physical interaction 38.13 48.86 4.73 0.00 0.01 -4.46
209493_at 209493_at AF338650 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF338650.1 /DEF=Homo sapiens PDZ domain-containing protein AIPC (AIPC) mRNA, complete cds. /FEA=mRNA /GEN=AIPC /PROD=PDZ domain-containing protein AIPC /DB_XREF=gi:12751451 /UG=Hs.173035 KIAA0300 protein /FL=gb:AF338650.1 AF338650 PDZ domain containing 2 PDZD2 23037 NM_015022 /// NM_178140 /// XM_005248269 /// XM_005248270 /// XM_005248271 /// XM_005248272 /// XM_006714456 /// XM_006714457 /// XM_006714458 /// XM_006714459 /// XM_006714460 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005911 // cell-cell junction // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation -45.03 36.41 -4.73 0.00 0.01 -4.46
204004_at 204004_at AI336206 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI336206 /FEA=EST /DB_XREF=gi:4073133 /DB_XREF=est:qt44e12.x1 /CLONE=IMAGE:1950862 /UG=Hs.176090 PRKC, apoptosis, WT1, regulator /FL=gb:U63809.1 gb:NM_002583.1 AI336206 PRKC, apoptosis, WT1, regulator PAWR 5074 NM_002583 /// XM_006719435 /// XM_006719436 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0030889 // negative regulation of B cell proliferation // inferred from electronic annotation /// 0042094 // interleukin-2 biosynthetic process // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // non-traceable author statement /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // inferred from sequence or structural similarity /// 0097190 // apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005884 // actin filament // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay 0003714 // transcription corepressor activity // traceable author statement /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from direct assay /// 0043522 // leucine zipper domain binding // inferred from physical interaction 104.35 257.77 4.73 0.00 0.01 -4.46
213581_at 213581_at BF446180 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF446180 /FEA=EST /DB_XREF=gi:11511318 /DB_XREF=est:7p33e08.x1 /CLONE=IMAGE:3647703 /UG=Hs.41639 programmed cell death 2 BF446180 programmed cell death 2 PDCD2 5134 NM_001199461 /// NM_001199462 /// NM_001199463 /// NM_001199464 /// NM_002598 /// NM_144781 /// XM_006715498 /// XR_427972 0006915 // apoptotic process // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 44.97 77.44 4.73 0.00 0.01 -4.46
218032_at 218032_at AF070673 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF070673.1 /DEF=Homo sapiens stannin mRNA, complete cds. /FEA=mRNA /PROD=stannin /DB_XREF=gi:3978241 /UG=Hs.76691 stannin /FL=gb:AF030196.1 gb:AF070673.1 gb:NM_003498.1 gb:AL161976.1 AF070673 stannin SNN 8303 NM_003498 0006950 // response to stress // traceable author statement /// 0009628 // response to abiotic stimulus // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 64.43 127.81 4.72 0.00 0.01 -4.46
213198_at 213198_at AL117643 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL117643.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434M245 (from clone DKFZp434M245). /FEA=mRNA /DB_XREF=gi:5912233 /UG=Hs.5288 Homo sapiens mRNA; cDNA DKFZp434M245 (from clone DKFZp434M245) AL117643 activin A receptor, type IB ACVR1B 91 NM_004302 /// NM_020327 /// NM_020328 /// XM_006719685 0000082 // G1/S transition of mitotic cell cycle // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007165 // signal transduction // inferred from direct assay /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // traceable author statement /// 0007417 // central nervous system development // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0032924 // activin receptor signaling pathway // inferred from direct assay /// 0032924 // activin receptor signaling pathway // inferred from mutant phenotype /// 0032927 // positive regulation of activin receptor signaling pathway // inferred from direct assay /// 0038092 // nodal signaling pathway // inferred from genetic interaction /// 0045648 // positive regulation of erythrocyte differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046545 // development of primary female sexual characteristics // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 1901165 // positive regulation of trophoblast cell migration // inferred from direct assay 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // non-traceable author statement /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016361 // activin receptor activity, type I // inferred from direct assay /// 0016361 // activin receptor activity, type I // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017002 // activin-activated receptor activity // inferred from direct assay /// 0019838 // growth factor binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // non-traceable author statement /// 0034711 // inhibin binding // inferred from physical interaction /// 0046332 // SMAD binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from direct assay -91.55 248.92 -4.72 0.00 0.01 -4.46
209344_at 209344_at BC002827 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002827.1 /DEF=Homo sapiens, tropomyosin 4, clone MGC:3641, mRNA, complete cds. /FEA=mRNA /PROD=tropomyosin 4 /DB_XREF=gi:12803958 /UG=Hs.250641 tropomyosin 4 /FL=gb:BC002827.1 gb:NM_003290.1 BC002827 tropomyosin 4 TPM4 7171 NM_001145160 /// NM_003290 /// XM_005260042 /// XM_006722865 0001649 // osteoblast differentiation // inferred from direct assay /// 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030049 // muscle filament sliding // traceable author statement 0001725 // stress fiber // inferred from direct assay /// 0002102 // podosome // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005862 // muscle thin filament tropomyosin // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceable author statement /// 0008307 // structural constituent of muscle // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 174.58 409.29 4.72 0.00 0.01 -4.46
216231_s_at 216231_s_at AW188940 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW188940 /FEA=EST /DB_XREF=gi:6463376 /DB_XREF=est:xk90f09.x1 /CLONE=IMAGE:2674025 /UG=Hs.75415 beta-2-microglobulin AW188940 beta-2-microglobulin B2M 567 NM_004048 /// XM_005254549 /// XM_006725182 0001895 // retina homeostasis // inferred from expression pattern /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // inferred from electronic annotation /// 0006955 // immune response // non-traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0042026 // protein refolding // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0031905 // early endosome lumen // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction -532.82 2350.81 -4.72 0.00 0.01 -4.46
202442_at 202442_at NM_001284 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001284.1 /DEF=Homo sapiens adaptor-related protein complex 3, sigma 1 subunit (AP3S1), mRNA. /FEA=mRNA /GEN=AP3S1 /PROD=adaptor-related protein complex 3, sigma 1subunit /DB_XREF=gi:4502860 /UG=Hs.80917 adaptor-related protein complex 3, sigma 1 subunit /FL=gb:BC000804.1 gb:D63643.1 gb:U91932.1 gb:NM_001284.1 NM_001284 adaptor-related protein complex 3, sigma 1 subunit AP3S1 1176 NM_001002924 /// NM_001284 /// XM_005271872 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048490 // anterograde synaptic vesicle transport // inferred from sequence or structural similarity 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030119 // AP-type membrane coat adaptor complex // traceable author statement /// 0030123 // AP-3 adaptor complex // inferred from direct assay /// 0030133 // transport vesicle // traceable author statement /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation 215.67 715.46 4.72 0.00 0.01 -4.46
210983_s_at 210983_s_at AF279900 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF279900.1 /DEF=Homo sapiens PNAS-146 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-146 /DB_XREF=gi:12751125 /UG=Hs.77152 minichromosome maintenance deficient (S. cerevisiae) 7 /FL=gb:AF279900.1 AF279900 minichromosome maintenance complex component 7 MCM7 4176 NM_001278595 /// NM_005916 /// NM_182776 /// XM_005250348 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006268 // DNA unwinding involved in DNA replication // inferred from electronic annotation /// 0006270 // DNA replication initiation // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0015979 // photosynthesis // inferred from electronic annotation /// 0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from electronic annotation 0000785 // chromatin // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042555 // MCM complex // inferred from direct assay /// 0042555 // MCM complex // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016851 // magnesium chelatase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation -106.52 260.59 -4.72 0.00 0.01 -4.46
218101_s_at 218101_s_at NM_004549 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004549.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 (14.5kD, B14.5b) (NDUFC2), mRNA. /FEA=mRNA /GEN=NDUFC2 /PROD=NADH dehydrogenase (ubiquinone) 1, subcomplexunknown, 2 (14.5kD, B14.5b) /DB_XREF=gi:4758783 /UG=Hs.193313 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 (14.5kD, B14.5b) /FL=gb:AF087659.1 gb:AF070652.1 gb:NM_004549.1 NM_004549 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa /// NDUFC2-KCTD14 readthrough NDUFC2 /// NDUFC2-KCTD14 4718 /// 100532726 NM_001203260 /// NM_001203261 /// NM_001203262 /// NM_001204054 /// NM_001204055 /// NM_004549 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation 196.82 823.76 4.72 0.00 0.01 -4.46
212418_at 212418_at M82882 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:M82882.1 /DEF=Human cis-acting sequence. /FEA=mRNA /DB_XREF=gi:180551 /UG=Hs.154365 E74-like factor 1 (ets domain transcription factor) M82882 E74-like factor 1 (ets domain transcription factor) ELF1 1997 NM_001145353 /// NM_172373 /// XM_005266276 /// XM_005266277 0001817 // regulation of cytokine production // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -86.42 127.11 -4.71 0.00 0.01 -4.46
202297_s_at 202297_s_at AF157324 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF157324.1 /DEF=Homo sapiens RER1 protein (RER1) mRNA, complete cds. /FEA=mRNA /GEN=RER1 /PROD=RER1 protein /DB_XREF=gi:7688698 /UG=Hs.40500 similar to S. cerevisiae RER1 /FL=gb:BC004965.1 gb:NM_007033.1 gb:AF157324.1 AF157324 retention in endoplasmic reticulum sorting receptor 1 RER1 11079 NM_007033 /// XM_005244713 /// XM_006710305 /// XM_006710306 /// XM_006710307 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // inferred from direct assay 60.85 161.62 4.70 0.00 0.01 -4.46
202906_s_at 202906_s_at AF049895 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF049895 /DEF=Homo sapiens 8q21.3: Nibrin (NBS1), 2,4-dienoyl-CoA reductase (DECR), and calbindin 1 (CALB1) genes /FEA=mRNA_5 /DB_XREF=gi:4126312 /UG=Hs.25812 Nijmegen breakage syndrome 1 (nibrin) /FL=gb:AF058696.1 gb:AF051334.1 gb:NM_002485.2 AF049895 nibrin NBN 4683 NM_001024688 /// NM_002485 /// XM_005250923 /// XR_242390 /// XR_242391 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // inferred from direct assay /// 0000723 // telomere maintenance // inferred from mutant phenotype /// 0000724 // double-strand break repair via homologous recombination // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // inferred from direct assay /// 0006302 // double-strand break repair // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007093 // mitotic cell cycle checkpoint // inferred from direct assay /// 0007095 // mitotic G2 DNA damage checkpoint // inferred from direct assay /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0030174 // regulation of DNA-dependent DNA replication initiation // traceable author statement /// 0030330 // DNA damage response, signal transduction by p53 class mediator // traceable author statement /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032508 // DNA duplex unwinding // inferred from mutant phenotype /// 0033674 // positive regulation of kinase activity // inferred from direct assay /// 0045190 // isotype switching // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005657 // replication fork // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0030870 // Mre11 complex // inferred from direct assay /// 0035861 // site of double-strand break // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from direct assay 0003684 // damaged DNA binding // inferred by curator /// 0004003 // ATP-dependent DNA helicase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction -55.33 81.94 -4.70 0.00 0.01 -4.46
201458_s_at 201458_s_at NM_004725 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004725.1 /DEF=Homo sapiens BUB3 (budding uninhibited by benzimidazoles 3, yeast) homolog (BUB3), mRNA. /FEA=mRNA /GEN=BUB3 /PROD=BUB3 (budding uninhibited by benzimidazoles 3,yeast) homolog /DB_XREF=gi:4757879 /UG=Hs.40323 BUB3 (budding uninhibited by benzimidazoles 3, yeast) homolog /FL=gb:BC005138.1 gb:AF047472.1 gb:AF053304.1 gb:AF081496.1 gb:NM_004725.1 NM_004725 BUB3 mitotic checkpoint protein BUB3 9184 NM_001007793 /// NM_004725 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051983 // regulation of chromosome segregation // inferred from electronic annotation /// 0071173 // spindle assembly checkpoint // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction 156.55 298.43 4.70 0.00 0.01 -4.46
212810_s_at 212810_s_at W72527 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W72527 /FEA=EST /DB_XREF=gi:1382184 /DB_XREF=est:zd63a09.s1 /CLONE=IMAGE:345304 /UG=Hs.286049 phosphoserine aminotransferase W72527 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 SLC1A4 6509 NM_001135581 /// NM_001193493 /// NM_003038 /// XM_006712079 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006821 // chloride transport // inferred from direct assay /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0006868 // glutamine transport // traceable author statement /// 0015808 // L-alanine transport // inferred from direct assay /// 0015811 // L-cystine transport // inferred from direct assay /// 0015824 // proline transport // inferred from direct assay /// 0015825 // L-serine transport // inferred from direct assay /// 0015826 // threonine transport // inferred from direct assay /// 0034589 // hydroxyproline transport // inferred from direct assay /// 0035249 // synaptic transmission, glutamatergic // non-traceable author statement /// 0035524 // proline transmembrane transport // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement /// 1902476 // chloride transmembrane transport // inferred from direct assay 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005882 // intermediate filament // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred by curator /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0030425 // dendrite // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005254 // chloride channel activity // inferred from direct assay /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015180 // L-alanine transmembrane transporter activity // inferred from direct assay /// 0015184 // L-cystine transmembrane transporter activity // inferred from direct assay /// 0015186 // L-glutamine transmembrane transporter activity // traceable author statement /// 0015193 // L-proline transmembrane transporter activity // inferred from direct assay /// 0015194 // L-serine transmembrane transporter activity // inferred from direct assay /// 0015195 // L-threonine transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation /// 0034590 // L-hydroxyproline transmembrane transporter activity // inferred from direct assay -41.12 55.59 -4.70 0.00 0.01 -4.46
202530_at 202530_at NM_001315 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001315.1 /DEF=Homo sapiens mitogen-activated protein kinase 14 (MAPK14), mRNA. /FEA=mRNA /GEN=MAPK14 /PROD=mitogen-activated protein kinase 14 /DB_XREF=gi:4503068 /UG=Hs.79107 mitogen-activated protein kinase 14 /FL=gb:NM_001315.1 gb:L35263.1 NM_001315 mitogen-activated protein kinase 14 MAPK14 1432 NM_001315 /// NM_139012 /// NM_139013 /// NM_139014 /// XM_006714998 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000165 // MAPK cascade // inferred from electronic annotation /// 0000187 // activation of MAPK activity // traceable author statement /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010831 // positive regulation of myotube differentiation // inferred from sequence or structural similarity /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0019395 // fatty acid oxidation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030316 // osteoclast differentiation // inferred from sequence or structural similarity /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from mutant phenotype /// 0038066 // p38MAPK cascade // inferred from sequence or structural similarity /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042307 // positive regulation of protein import into nucleus // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0042770 // signal transduction in response to DNA damage // inferred from mutant phenotype /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045648 // positive regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045663 // positive regulation of myoblast differentiation // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // traceable author statement /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070935 // 3'-UTR-mediated mRNA stabilization // traceable author statement /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0071479 // cellular response to ionizing radiation // inferred from mutant phenotype /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from electronic annotation /// 0090400 // stress-induced premature senescence // inferred from mutant phenotype /// 1901741 // positive regulation of myoblast fusion // inferred from sequence or structural similarity /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from mutant phenotype 0000922 // spindle pole // inferred from electronic annotation /// 0005623 // cell // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004708 // MAP kinase kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0051525 // NFAT protein binding // inferred from sequence or structural similarity 62.93 101.16 4.70 0.00 0.01 -4.46
209479_at 209479_at BC000758 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000758.1 /DEF=Homo sapiens, clone MGC:2698, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:2698) /DB_XREF=gi:12653928 /UG=Hs.44468 DKFZP586D0623 protein /FL=gb:BC000758.1 BC000758 coiled-coil domain containing 28A CCDC28A 25901 NM_015439 -50.20 101.53 -4.69 0.00 0.01 -4.46
215195_at 215195_at AF035594 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF035594.1 /DEF=Homo sapiens protein kinase C-alpha mRNA, partial 3 UTR. /FEA=mRNA /DB_XREF=gi:3168857 /UG=Hs.279856 Homo sapiens protein kinase C-alpha mRNA, partial 3 UTR AF035594 protein kinase C, alpha PRKCA 5578 NM_002737 /// XM_006721972 /// XR_243672 /// XR_243673 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002159 // desmosome assembly // inferred from mutant phenotype /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0007194 // negative regulation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0010613 // positive regulation of cardiac muscle hypertrophy // inferred from sequence or structural similarity /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0031666 // positive regulation of lipopolysaccharide-mediated signaling pathway // inferred from mutant phenotype /// 0034351 // negative regulation of glial cell apoptotic process // inferred from mutant phenotype /// 0035408 // histone H3-T6 phosphorylation // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0036289 // peptidyl-serine autophosphorylation // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045651 // positive regulation of macrophage differentiation // inferred from sequence or structural similarity /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 0071322 // cellular response to carbohydrate stimulus // inferred from electronic annotation /// 0090330 // regulation of platelet aggregation // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation /// 2000707 // positive regulation of dense core granule biogenesis // inferred from sequence or structural similarity 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from sequence or structural similarity /// 0004698 // calcium-dependent protein kinase C activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0035403 // histone kinase activity (H3-T6 specific) // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -49.10 43.85 -4.69 0.00 0.01 -4.46
212185_x_at 212185_x_at NM_005953 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005953.1 /DEF=Homo sapiens metallothionein 2A (MT2A), mRNA. /FEA=CDS /GEN=MT2A /PROD=metallothionein 2A /DB_XREF=gi:5174763 /UG=Hs.118786 metallothionein 2A /FL=gb:NM_005953.1 NM_005953 metallothionein 2A MT2A 4502 NM_005953 0006878 // cellular copper ion homeostasis // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0035690 // cellular response to drug // inferred from direct assay /// 0036016 // cellular response to interleukin-3 // inferred from expression pattern /// 0036018 // cellular response to erythropoietin // inferred from expression pattern /// 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0071294 // cellular response to zinc ion // inferred from expression pattern 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -2595.70 5236.95 -4.69 0.00 0.01 -4.46
213154_s_at 213154_s_at AI934125 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI934125 /FEA=EST /DB_XREF=gi:5672995 /DB_XREF=est:wn97c08.x1 /CLONE=IMAGE:2453774 /UG=Hs.17411 KIAA0699 protein AI934125 bicaudal D homolog 2 (Drosophila) BICD2 23299 NM_001003800 /// NM_015250 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0072385 // minus-end-directed organelle transport along microtubule // inferred from sequence or structural similarity /// 0072393 // microtubule anchoring at microtubule organizing center // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0017137 // Rab GTPase binding // inferred from sequence or structural similarity 68.77 149.11 4.69 0.00 0.01 -4.46
219628_at 219628_at NM_022470 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022470.1 /DEF=Homo sapiens hypothetical protein FLJ12296 similar to wild-type p53-induced gene 1 (FLJ12296), mRNA. /FEA=mRNA /GEN=FLJ12296 /PROD=hypothetical protein FLJ12296 similar towild-type p53-induced gene 1 /DB_XREF=gi:11968018 /UG=Hs.252406 hypothetical protein FLJ12296 similar to wild-type p53-induced gene 1 /FL=gb:NM_022470.1 gb:BC002896.1 NM_022470 zinc finger, matrin-type 3 ZMAT3 64393 NM_022470 /// NM_152240 /// XM_005247706 /// XM_006713725 /// XM_006713726 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 87.85 168.88 4.69 0.00 0.01 -4.46
210705_s_at 210705_s_at AF220028 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF220028.1 /DEF=Homo sapiens tripartite motif protein TRIM5 isoform delta (TRIM5) mRNA, complete cds; alternatively spliced. /FEA=mRNA /GEN=TRIM5 /PROD=tripartite motif protein TRIM5 isoform delta /DB_XREF=gi:12407386 /UG=Hs.30445 Homo sapiens tripartite motif protein TRIM5 isoform epsilon (TRIM5) mRNA, complete cds; alternatively spliced /FL=gb:AF220028.1 AF220028 tripartite motif containing 5 TRIM5 85363 NM_033034 /// NM_033092 /// NM_033093 /// XM_005253183 /// XM_005253184 /// XM_006718358 0002218 // activation of innate immune response // inferred from direct assay /// 0002221 // pattern recognition receptor signaling pathway // inferred from direct assay /// 0002376 // immune system process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031664 // regulation of lipopolysaccharide-mediated signaling pathway // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043410 // positive regulation of MAPK cascade // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from direct assay /// 0046597 // negative regulation of viral entry into host cell // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051607 // defense response to virus // traceable author statement /// 0070206 // protein trimerization // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 1902187 // negative regulation of viral release from host cell // inferred from direct assay 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008329 // signaling pattern recognition receptor activity // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 53.23 67.09 4.69 0.00 0.01 -4.46
203182_s_at 203182_s_at NM_003138 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003138.1 /DEF=Homo sapiens SFRS protein kinase 2 (SRPK2), mRNA. /FEA=mRNA /GEN=SRPK2 /PROD=SFRS protein kinase 2 /DB_XREF=gi:4507220 /UG=Hs.78353 SFRS protein kinase 2 /FL=gb:U88666.1 gb:NM_003138.1 NM_003138 SRSF protein kinase 2 SRPK2 6733 NM_001278273 /// NM_182691 /// NM_182692 /// XM_005250549 /// XM_005250550 /// XM_005250551 /// XM_006716098 0000245 // spliceosomal complex assembly // inferred from direct assay /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008380 // RNA splicing // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035063 // nuclear speck organization // inferred from sequence or structural similarity /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0043525 // positive regulation of neuron apoptotic process // inferred from sequence or structural similarity /// 0045070 // positive regulation of viral genome replication // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045087 // innate immune response // inferred by curator /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0048024 // regulation of mRNA splicing, via spliceosome // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0071889 // 14-3-3 protein binding // inferred from sequence or structural similarity 53.92 138.54 4.68 0.00 0.01 -4.46
209079_x_at 209079_x_at AF152318 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF152318.1 /DEF=Homo sapiens protocadherin gamma A1 (PCDH-gamma-A1) mRNA, complete cds. /FEA=mRNA /GEN=PCDH-gamma-A1 /PROD=protocadherin gamma A1 /DB_XREF=gi:5456923 /UG=Hs.284180 protocadherin gamma subfamily A, 1 /FL=gb:NM_018912.1 gb:BC004321.1 gb:AF152318.1 AF152318 protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 4 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 6 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 1 /// protocadherin gamma subfamily B, 2 /// protocadherin gamma subfamily B, 3 /// protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5 /// protocadherin gamma subfamily B, 6 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily C, 3 /// protocadherin gamma subfamily C, 4 /// protocadherin gamma subfamily C, 5 PCDHGA1 /// PCDHGA10 /// PCDHGA11 /// PCDHGA12 /// PCDHGA2 /// PCDHGA3 /// PCDHGA4 /// PCDHGA5 /// PCDHGA6 /// PCDHGA7 /// PCDHGA8 /// PCDHGA9 /// PCDHGB1 /// PCDHGB2 /// PCDHGB3 /// PCDHGB4 /// PCDHGB5 /// PCDHGB6 /// PCDHGB7 /// PCDHGC3 /// PCDHGC4 /// PCDHGC5 5098 /// 8641 /// 9708 /// 26025 /// 56097 /// 56098 /// 56099 /// 56100 /// 56101 /// 56102 /// 56103 /// 56104 /// 56105 /// 56106 /// 56107 /// 56108 /// 56109 /// 56110 /// 56111 /// 56112 /// 56113 /// 56114 NM_002588 /// NM_003735 /// NM_003736 /// NM_014004 /// NM_018912 /// NM_018913 /// NM_018914 /// NM_018915 /// NM_018916 /// NM_018917 /// NM_018918 /// NM_018919 /// NM_018920 /// NM_018921 /// NM_018922 /// NM_018923 /// NM_018924 /// NM_018925 /// NM_018926 /// NM_018927 /// NM_018928 /// NM_018929 /// NM_031993 /// NM_032009 /// NM_032011 /// NM_032053 /// NM_032054 /// NM_032086 /// NM_032087 /// NM_032088 /// NM_032089 /// NM_032090 /// NM_032091 /// NM_032092 /// NM_032094 /// NM_032095 /// NM_032096 /// NM_032097 /// NM_032098 /// NM_032099 /// NM_032100 /// NM_032101 /// NM_032402 /// NM_032403 /// NM_032406 /// NM_032407 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -68.80 348.98 -4.68 0.00 0.01 -4.46
201615_x_at 201615_x_at AI685060 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI685060 /FEA=EST /DB_XREF=gi:4896365 /DB_XREF=est:wc67a07.x1 /CLONE=IMAGE:2323668 /UG=Hs.325474 caldesmon 1 /FL=gb:NM_004342.2 gb:M64110.1 AI685060 caldesmon 1 CALD1 800 NM_004342 /// NM_033138 /// NM_033139 /// NM_033140 /// NM_033157 /// XM_006716136 /// XM_006716137 /// XM_006716138 /// XM_006716139 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030478 // actin cap // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // traceable author statement /// 0017022 // myosin binding // inferred from electronic annotation -45.97 138.54 -4.68 0.00 0.01 -4.46
213310_at 213310_at AI613483 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI613483 /FEA=EST /DB_XREF=gi:4622650 /DB_XREF=est:ty37e12.x1 /CLONE=IMAGE:2281294 /UG=Hs.324504 Homo sapiens mRNA; cDNA DKFZp586J0720 (from clone DKFZp586J0720) AI613483 argonaute RISC catalytic component 2 /// cancer susceptibility candidate 7 (non-protein coding) /// /// Homo sapiens cDNA FLJ38845 fis, clone MESAN2003709. AGO2 /// CASC7 /// CASC7 /// DQ574852 27161 /// 286109 NM_001164623 /// NM_012154 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006379 // mRNA cleavage // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006413 // translational initiation // non-traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0031047 // gene silencing by RNA // inferred from sequence or structural similarity /// 0031054 // pre-miRNA processing // inferred from direct assay /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // inferred from direct assay /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // inferred from mutant phenotype /// 0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from direct assay /// 0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045947 // negative regulation of translational initiation // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // inferred from sequence or structural similarity /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // not recorded /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 1900153 // positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from sequence or structural similarity 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005844 // polysome // inferred from direct assay /// 0005845 // mRNA cap binding complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016442 // RISC complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0035068 // micro-ribonucleoprotein complex // inferred from direct assay 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004521 // endoribonuclease activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0035197 // siRNA binding // inferred from direct assay /// 0035198 // miRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070551 // endoribonuclease activity, cleaving siRNA-paired mRNA // inferred from direct assay -91.80 187.28 -4.68 0.00 0.01 -4.46
218303_x_at 218303_x_at NM_016618 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016618.1 /DEF=Homo sapiens hypothetical protein (LOC51315), mRNA. /FEA=mRNA /GEN=LOC51315 /PROD=hypothetical protein /DB_XREF=gi:7706155 /UG=Hs.5721 hypothetical protein /FL=gb:AF208845.1 gb:AF217520.1 gb:NM_016618.1 NM_016618 lysine-rich coiled-coil 1 KRCC1 51315 NM_016618 /// XM_005264360 -99.65 312.82 -4.68 0.00 0.01 -4.46
222039_at 222039_at AA292789 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA292789 /FEA=EST /DB_XREF=gi:1941611 /DB_XREF=est:zt56d09.s1 /CLONE=IMAGE:726353 /UG=Hs.274448 hypothetical protein FLJ11029 AA292789 kinesin family member 18B KIF18B 146909 NM_001080443 /// NM_001264573 /// NM_001265577 /// XM_005257077 0000278 // mitotic cell cycle // inferred from direct assay /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007019 // microtubule depolymerization // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008152 // metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051302 // regulation of cell division // inferred from direct assay 0000235 // astral microtubule // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0035371 // microtubule plus-end // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from direct assay /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction 59.57 113.19 4.67 0.00 0.01 -4.46
217760_at 217760_at AA176780 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA176780 /FEA=EST /DB_XREF=gi:1757929 /DB_XREF=est:zp32a10.s1 /CLONE=IMAGE:611130 /UG=Hs.14512 DIPB protein /FL=gb:NM_017583.1 AA176780 tripartite motif containing 44 TRIM44 54765 NM_017583 /// XM_006718254 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 65.47 150.71 4.67 0.00 0.01 -4.46
221505_at 221505_at AW612574 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW612574 /FEA=EST /DB_XREF=gi:7317760 /DB_XREF=est:hh05b12.x1 /CLONE=IMAGE:2954207 /UG=Hs.71331 hypothetical protein MGC5350 /FL=gb:BC003380.1 AW612574 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E ANP32E 81611 NM_001136478 /// NM_001136479 /// NM_001280559 /// NM_001280560 /// NM_030920 /// XM_005245513 /// XM_005245514 /// XR_426799 /// XR_426800 0016568 // chromatin modification // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from sequence or structural similarity /// 0043486 // histone exchange // inferred from direct assay 0000812 // Swr1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation /// 0019212 // phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0042393 // histone binding // inferred from direct assay 55.70 294.72 4.67 0.00 0.01 -4.46
221059_s_at 221059_s_at NM_021615 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021615.1 /DEF=Homo sapiens carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 (CHST6), mRNA. /FEA=mRNA /GEN=CHST6 /PROD=carbohydrate (N-acetylglucosamine 6-O)sulfotransferase 6 /DB_XREF=gi:11055975 /UG=Hs.157439 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 /FL=gb:AF219990.1 gb:NM_021615.1 NM_021615 coactosin-like F-actin binding protein 1 COTL1 23406 NM_021149 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006044 // N-acetylglucosamine metabolic process // inferred by curator /// 0006044 // N-acetylglucosamine metabolic process // inferred from direct assay /// 0006790 // sulfur compound metabolic process // inferred from direct assay /// 0018146 // keratan sulfate biosynthetic process // inferred from direct assay /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050832 // defense response to fungus // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001517 // N-acetylglucosamine 6-O-sulfotransferase activity // inferred from direct assay /// 0001517 // N-acetylglucosamine 6-O-sulfotransferase activity // traceable author statement /// 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction -186.15 468.32 -4.67 0.00 0.01 -4.46
212188_at 212188_at AA551075 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA551075 /FEA=EST /DB_XREF=gi:2321327 /DB_XREF=est:nk74h06.s1 /CLONE=IMAGE:1019291 /UG=Hs.109438 Homo sapiens clone 24775 mRNA sequence AA551075 potassium channel tetramerization domain containing 12 KCTD12 115207 NM_138444 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 226.15 407.93 4.67 0.00 0.01 -4.46
204382_at 204382_at NM_015654 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015654.1 /DEF=Homo sapiens DKFZP564C103 protein (DKFZP564C103), mRNA. /FEA=mRNA /GEN=DKFZP564C103 /PROD=DKFZP564C103 protein /DB_XREF=gi:7661603 /UG=Hs.144058 DKFZP564C103 protein /FL=gb:BC004195.1 gb:BC004225.1 gb:NM_015654.1 NM_015654 N-acetyltransferase 9 (GCN5-related, putative) NAT9 26151 NM_015654 /// XM_005257207 /// XM_005257212 /// XM_006721812 /// XM_006721813 /// XM_006721814 /// XM_006721815 /// XM_006721816 /// XR_243644 0008152 // metabolic process // inferred from electronic annotation 0043234 // protein complex // inferred from direct assay 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 51.02 48.61 4.67 0.00 0.01 -4.46
217407_x_at 217407_x_at U37220 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U37220.1 /DEF=Human cyclophilin-like protein mRNA, partial cds. /FEA=mRNA /PROD=cyclophilin-like protein /DB_XREF=gi:1199599 /UG=Hs.93523 peptidylprolyl isomerase (cyclophilin)-like 2 U37220 peptidylprolyl isomerase (cyclophilin)-like 2 PPIL2 23759 NM_014337 /// NM_148175 /// NM_148176 /// XM_005261447 /// XM_005261448 /// XM_006724197 /// XM_006724198 0000209 // protein polyubiquitination // inferred from direct assay /// 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0051898 // negative regulation of protein kinase B signaling // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from direct assay 37.63 31.51 4.66 0.00 0.01 -4.46
213293_s_at 213293_s_at AA083478 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA083478 /FEA=EST /DB_XREF=gi:1625564 /DB_XREF=est:zn32e02.s1 /CLONE=IMAGE:549146 /UG=Hs.295978 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 746039 AA083478 tripartite motif containing 22 TRIM22 10346 NM_001199573 /// NM_006074 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006955 // immune response // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0070206 // protein trimerization // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 84.37 374.54 4.66 0.00 0.01 -4.46
213860_x_at 213860_x_at AW268585 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW268585 /FEA=EST /DB_XREF=gi:6655615 /DB_XREF=est:xv34g06.x1 /CLONE=IMAGE:2815066 /UG=Hs.84264 acidic protein rich in leucines AW268585 casein kinase 1, alpha 1 CSNK1A1 1452 NM_001025105 /// NM_001271741 /// NM_001271742 /// NM_001892 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -153.73 759.21 -4.66 0.00 0.01 -4.46
201729_s_at 201729_s_at NM_014680 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014680.1 /DEF=Homo sapiens KIAA0100 gene product (KIAA0100), mRNA. /FEA=mRNA /GEN=KIAA0100 /PROD=KIAA0100 gene product /DB_XREF=gi:7661903 /UG=Hs.151761 KIAA0100 gene product /FL=gb:D43947.1 gb:NM_014680.1 NM_014680 KIAA0100 KIAA0100 9703 NM_014680 /// XM_005258073 /// XM_006722198 /// XR_429933 0005576 // extracellular region // inferred from electronic annotation 49.88 177.04 4.66 0.00 0.01 -4.46
209232_s_at 209232_s_at BC004191 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004191.1 /DEF=Homo sapiens, dynactin 4, clone MGC:3248, mRNA, complete cds. /FEA=mRNA /PROD=dynactin 4 /DB_XREF=gi:13278857 /UG=Hs.111429 Homo sapiens, dynactin 4, clone MGC:3248, mRNA, complete cds /FL=gb:BC004191.1 BC004191 dynactin 5 (p25) DCTN5 84516 NM_001199011 /// NM_001199743 /// NM_032486 /// NR_037573 /// XR_243320 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation 93.65 93.33 4.66 0.00 0.01 -4.46
202056_at 202056_at AW051311 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW051311 /FEA=EST /DB_XREF=gi:5913581 /DB_XREF=est:wy89b01.x1 /CLONE=IMAGE:2555689 /UG=Hs.169149 karyopherin alpha 1 (importin alpha 5) /FL=gb:BC002374.1 gb:BC003009.1 gb:NM_002264.1 AW051311 karyopherin alpha 1 (importin alpha 5) KPNA1 3836 NM_002264 /// NR_026698 /// XM_005247437 /// XM_005247439 0000018 // regulation of DNA recombination // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0042307 // positive regulation of protein import into nucleus // inferred from sequence or structural similarity /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030425 // dendrite // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008565 // protein transporter activity // inferred from electronic annotation 47.07 83.89 4.65 0.00 0.01 -4.46
214971_s_at 214971_s_at AV695711 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV695711 /FEA=EST /DB_XREF=gi:10297574 /DB_XREF=est:AV695711 /CLONE=GKCDXA06 /UG=Hs.2554 sialyltransferase 1 (beta-galactoside alpha-2,6-sialytransferase) AV695711 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 ST6GAL1 6480 NM_003032 /// NM_173216 /// NM_173217 /// XM_005247717 /// XM_005247719 /// XM_005247720 /// XM_006713734 0006054 // N-acetylneuraminate metabolic process // inferred from direct assay /// 0006464 // cellular protein modification process // non-traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006959 // humoral immune response // traceable author statement /// 0016266 // O-glycan processing // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // inferred from direct assay /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0097503 // sialylation // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003835 // beta-galactoside alpha-2,6-sialyltransferase activity // inferred from direct assay /// 0008373 // sialyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -117.88 91.76 -4.65 0.00 0.01 -4.46
207265_s_at 207265_s_at NM_016657 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016657.1 /DEF=Homo sapiens KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 (KDELR3), transcript variant 2, mRNA. /FEA=mRNA /GEN=KDELR3 /PROD=KDEL receptor 3, isoform b /DB_XREF=gi:8051610 /UG=Hs.250696 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 /FL=gb:NM_016657.1 NM_016657 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 KDELR3 11015 NM_006855 /// NM_016657 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0046923 // ER retention sequence binding // inferred from electronic annotation 106.07 259.16 4.65 0.00 0.01 -4.46
205541_s_at 205541_s_at NM_018094 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018094.1 /DEF=Homo sapiens hypothetical protein FLJ10441 (FLJ10441), mRNA. /FEA=mRNA /GEN=FLJ10441 /PROD=hypothetical protein FLJ10441 /DB_XREF=gi:8922423 /UG=Hs.59523 hypothetical protein FLJ10441 /FL=gb:NM_018094.1 NM_018094 G1 to S phase transition 2 GSPT2 23708 NM_018094 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 42.60 87.22 4.65 0.00 0.01 -4.46
208857_s_at 208857_s_at M93008 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M93008.1 /DEF=Human L-isoaspartylD-aspartyl protein carboxyl methyltransferase isozyme II mRNA, complete cds. /FEA=mRNA /PROD=L-isoaspartylD-aspartyl protein carboxylmethyltransferase /DB_XREF=gi:180636 /UG=Hs.79137 protein-L-isoaspartate (D-aspartate) O-methyltransferase /FL=gb:D25546.1 gb:M93008.1 gb:D13892.1 M93008 protein-L-isoaspartate (D-aspartate) O-methyltransferase PCMT1 5110 NM_001252049 /// NM_001252050 /// NM_001252051 /// NM_001252052 /// NM_001252053 /// NM_005389 0006464 // cellular protein modification process // inferred from electronic annotation /// 0006479 // protein methylation // traceable author statement /// 0030091 // protein repair // traceable author statement /// 0032259 // methylation // inferred from electronic annotation /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from electronic annotation /// 0046500 // S-adenosylmethionine metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // traceable author statement /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 68.75 205.20 4.64 0.00 0.01 -4.46
212747_at 212747_at AI990523 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI990523 /FEA=EST /DB_XREF=gi:5837404 /DB_XREF=est:ws40g04.x1 /CLONE=IMAGE:2499702 /UG=Hs.20060 KIAA0229 protein AI990523 ankyrin repeat and sterile alpha motif domain containing 1A ANKS1A 23294 NM_015245 /// XM_005248964 /// XM_006715033 /// XM_006715034 /// XM_006715035 /// XM_006715036 /// XM_006715037 /// XM_006715038 0006929 // substrate-dependent cell migration // inferred from sequence or structural similarity /// 0016322 // neuron remodeling // inferred from sequence or structural similarity /// 0048013 // ephrin receptor signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0046875 // ephrin receptor binding // inferred from electronic annotation 44.58 79.59 4.64 0.00 0.01 -4.46
219600_s_at 219600_s_at NM_006134 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006134.2 /DEF=Homo sapiens chromosome 21 open reading frame 4 (C21ORF4), mRNA. /FEA=mRNA /GEN=C21ORF4 /PROD=chromosome 21 open reading frame 4 /DB_XREF=gi:8659558 /UG=Hs.284142 chromosome 21 open reading frame 4 /FL=gb:BC000569.1 gb:AF045606.2 gb:NM_006134.2 NM_006134 transmembrane protein 50B TMEM50B 757 NM_006134 /// NR_038211 /// NR_040016 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 50.75 116.15 4.64 0.00 0.01 -4.46
208598_s_at 208598_s_at NM_005703 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005703.2 /DEF=Homo sapiens upstream regulatory element binding protein 1 (UREB1), mRNA. /FEA=CDS /GEN=UREB1 /PROD=upstream regulatory element binding protein 1 /DB_XREF=gi:6692990 /UG=Hs.3383 upstream regulatory element binding protein 1 /FL=gb:NM_005703.2 NM_005703 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase HUWE1 10075 NM_031407 /// XM_005261965 /// XM_005261966 /// XM_005261967 /// XM_005261968 /// XM_005261969 /// XM_005261971 /// XM_005261972 /// XM_006724574 0000209 // protein polyubiquitination // inferred from direct assay /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from mutant phenotype /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -139.57 579.91 -4.64 0.00 0.01 -4.46
212282_at 212282_at BF038366 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF038366 /FEA=EST /DB_XREF=gi:10744142 /DB_XREF=est:601459338F1 /CLONE=IMAGE:3862808 /UG=Hs.199695 hypothetical protein BF038366 transmembrane protein 97 TMEM97 27346 NM_014573 /// XM_005257965 0001558 // regulation of cell growth // non-traceable author statement /// 0042632 // cholesterol homeostasis // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 49.72 130.09 4.64 0.00 0.01 -4.46
217976_s_at 217976_s_at NM_016141 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016141.1 /DEF=Homo sapiens dynein light chain-A (LOC51143), mRNA. /FEA=mRNA /GEN=LOC51143 /PROD=dynein light chain-A /DB_XREF=gi:7705852 /UG=Hs.266483 dynein light chain-A /FL=gb:AF078849.1 gb:NM_016141.1 NM_016141 dynein, cytoplasmic 1, light intermediate chain 1 DYNC1LI1 51143 NM_016141 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // inferred from mutant phenotype 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030286 // dynein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 62.87 122.04 4.63 0.00 0.01 -4.46
212870_at 212870_at AI628605 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI628605 /FEA=EST /DB_XREF=gi:4665405 /DB_XREF=est:ty77a08.x1 /CLONE=IMAGE:2285078 /UG=Hs.326392 son of sevenless (Drosophila) homolog 1 /FL=gb:L13858.1 gb:NM_005633.1 AI628605 son of sevenless homolog 2 (Drosophila) SOS2 6655 NM_006939 /// XM_005268021 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051057 // positive regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // non-traceable author statement /// 0005088 // Ras guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -56.40 122.00 -4.63 0.00 0.01 -4.46
204881_s_at 204881_s_at NM_003358 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003358.1 /DEF=Homo sapiens UDP-glucose ceramide glucosyltransferase (UGCG), mRNA. /FEA=mRNA /GEN=UGCG /PROD=ceramide glucosyltransferase /DB_XREF=gi:4507810 /UG=Hs.152601 UDP-glucose ceramide glucosyltransferase /FL=gb:D50840.1 gb:NM_003358.1 NM_003358 UDP-glucose ceramide glucosyltransferase UGCG 7357 NM_003358 /// XM_005252186 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006679 // glucosylceramide biosynthetic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0006688 // glycosphingolipid biosynthetic process // traceable author statement /// 0008544 // epidermis development // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0008120 // ceramide glucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -488.40 709.60 -4.63 0.00 0.01 -4.46
205017_s_at 205017_s_at AI088145 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI088145 /FEA=EST /DB_XREF=gi:3427121 /DB_XREF=est:oz95h07.x1 /CLONE=IMAGE:1683133 /UG=Hs.184340 C3H-type zinc finger protein; similar to D. melanogaster muscleblind B protein /FL=gb:AF061261.1 gb:NM_005757.2 AI088145 muscleblind-like splicing regulator 2 MBNL2 10150 NM_144778 /// NM_207304 /// XM_005254018 /// XM_005254019 /// XM_005254020 /// XM_005254021 /// XM_005254022 /// XM_006719912 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -115.15 114.12 -4.63 0.00 0.01 -4.46
202330_s_at 202330_s_at NM_003362 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003362.1 /DEF=Homo sapiens uracil-DNA glycosylase (UNG), mRNA. /FEA=mRNA /GEN=UNG /PROD=uracil-DNA glycosylase /DB_XREF=gi:6224978 /UG=Hs.78853 uracil-DNA glycosylase /FL=gb:NM_003362.1 NM_003362 uracil-DNA glycosylase UNG 7374 NM_003362 /// NM_080911 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016446 // somatic hypermutation of immunoglobulin genes // inferred from electronic annotation /// 0016447 // somatic recombination of immunoglobulin gene segments // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation 0004844 // uracil DNA N-glycosylase activity // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // inferred from electronic annotation 49.65 61.55 4.63 0.00 0.01 -4.46
201873_s_at 201873_s_at NM_002940 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002940.1 /DEF=Homo sapiens ATP-binding cassette, sub-family E (OABP), member 1 (ABCE1), mRNA. /FEA=mRNA /GEN=ABCE1 /PROD=ATP-binding cassette, sub-family E, member 1 /DB_XREF=gi:4506558 /UG=Hs.12013 ATP-binding cassette, sub-family E (OABP), member 1 /FL=gb:NM_002940.1 NM_002940 ATP-binding cassette, sub-family E (OABP), member 1 ABCE1 6059 NM_001040876 /// NM_002940 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006401 // RNA catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008428 // ribonuclease inhibitor activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 111.25 272.18 4.63 0.00 0.01 -4.46
219622_at 219622_at NM_017817 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017817.1 /DEF=Homo sapiens hypothetical protein FLJ20429 (FLJ20429), mRNA. /FEA=mRNA /GEN=FLJ20429 /PROD=hypothetical protein FLJ20429 /DB_XREF=gi:8923400 /UG=Hs.179791 hypothetical protein FLJ20429 /FL=gb:NM_017817.1 NM_017817 RAB20, member RAS oncogene family RAB20 55647 NM_017817 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0090383 // phagosome acidification // inferred from mutant phenotype /// 0090385 // phagosome-lysosome fusion // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation -44.12 64.51 -4.63 0.00 0.01 -4.46
208738_x_at 208738_x_at AK024823 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024823.1 /DEF=Homo sapiens cDNA: FLJ21170 fis, clone CAS10946, highly similar to HSSMT3B Homo sapiens mRNA for SMT3B protein. /FEA=mRNA /DB_XREF=gi:10437226 /UG=Hs.180139 SMT3 (suppressor of mif two 3, yeast) homolog 2 /FL=gb:L76416.1 gb:NM_006937.1 AK024823 small ubiquitin-related modifier 2-like /// small ubiquitin-like modifier 2 /// small ubiquitin-like modifier 3 LOC101929087 /// SUMO2 /// SUMO3 6612 /// 6613 /// 101929087 NM_001005849 /// NM_001286416 /// NM_006936 /// NM_006937 /// XM_005250081 /// XM_005276013 /// XM_005276311 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // traceable author statement /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000776 // kinetochore // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 159.40 535.38 4.63 0.00 0.01 -4.46
212904_at 212904_at AB033011 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB033011.1 /DEF=Homo sapiens mRNA for KIAA1185 protein, partial cds. /FEA=mRNA /GEN=KIAA1185 /PROD=KIAA1185 protein /DB_XREF=gi:6330301 /UG=Hs.268488 KIAA1185 protein AB033011 leucine rich repeat containing 47 LRRC47 57470 NM_020710 0008152 // metabolic process // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004826 // phenylalanine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 72.80 306.18 4.63 0.00 0.01 -4.46
204396_s_at 204396_s_at NM_005308 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005308.1 /DEF=Homo sapiens G protein-coupled receptor kinase 5 (GPRK5), mRNA. /FEA=mRNA /GEN=GPRK5 /PROD=G protein-coupled receptor kinase 5 /DB_XREF=gi:4885348 /UG=Hs.211569 G protein-coupled receptor kinase 5 /FL=gb:L15388.1 gb:NM_005308.1 NM_005308 G protein-coupled receptor kinase 5 GRK5 2869 NM_005308 /// XM_005269707 /// XM_005269708 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // traceable author statement /// 0007217 // tachykinin receptor signaling pathway // inferred from direct assay /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -102.03 203.89 -4.63 0.00 0.01 -4.46
221085_at 221085_at NM_005118 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005118.1 /DEF=Homo sapiens tumor necrosis factor (ligand) superfamily, member 15 (TNFSF15), mRNA. /FEA=mRNA /GEN=TNFSF15 /PROD=tumor necrosis factor (ligand) superfamily,member 15 /DB_XREF=gi:4827031 /UG=Hs.241382 tumor necrosis factor (ligand) superfamily, member 15 /FL=gb:NM_005118.1 NM_005118 tumor necrosis factor (ligand) superfamily, member 15 TNFSF15 9966 NM_001204344 /// NM_005118 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from direct assay /// 0042107 // cytokine metabolic process // inferred from direct assay /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0005102 // receptor binding // traceable author statement /// 0005123 // death receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -116.98 150.11 -4.62 0.00 0.01 -4.46
205159_at 205159_at AV756141 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV756141 /FEA=EST /DB_XREF=gi:10913989 /DB_XREF=est:AV756141 /CLONE=BMFAKF10 /UG=Hs.285401 colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) /FL=gb:NM_000395.1 gb:M59941.1 AV756141 colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) CSF2RB 1439 NM_000395 /// XM_005261340 /// XM_005261342 0007165 // signal transduction // non-traceable author statement /// 0007585 // respiratory gaseous exchange // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0036016 // cellular response to interleukin-3 // traceable author statement /// 0038043 // interleukin-5-mediated signaling pathway // traceable author statement /// 0038156 // interleukin-3-mediated signaling pathway // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030526 // granulocyte macrophage colony-stimulating factor receptor complex // traceable author statement 0004872 // receptor activity // traceable author statement /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004912 // interleukin-3 receptor activity // traceable author statement /// 0004914 // interleukin-5 receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -150.57 282.41 -4.62 0.00 0.01 -4.46
221870_at 221870_at AI417917 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI417917 /FEA=EST /DB_XREF=gi:4261421 /DB_XREF=est:tg55d04.x1 /CLONE=IMAGE:2112679 /UG=Hs.20733 Homo sapiens cDNA: FLJ22356 fis, clone HRC06345 AI417917 EH-domain containing 2 EHD2 30846 NM_014601 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0032456 // endocytic recycling // inferred from genetic interaction /// 0072659 // protein localization to plasma membrane // inferred from sequence or structural similarity /// 1901741 // positive regulation of myoblast fusion // inferred from sequence or structural similarity /// 2001137 // positive regulation of endocytic recycling // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005768 // endosome // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from direct assay /// 0010008 // endosome membrane // traceable author statement /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 153.10 252.43 4.62 0.00 0.01 -4.46
201959_s_at 201959_s_at AA488899 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA488899 /FEA=EST /DB_XREF=gi:2218501 /DB_XREF=est:aa55h06.s1 /CLONE=IMAGE:824891 /UG=Hs.151411 KIAA0916 protein /FL=gb:AF075587.1 gb:AF083244.1 gb:NM_015057.1 AA488899 MYC binding protein 2, E3 ubiquitin protein ligase MYCBP2 23077 NM_015057 /// XM_005266299 /// XM_005266300 /// XM_006719779 /// XM_006719780 /// XM_006719781 /// XM_006719782 /// XM_006719783 /// XM_006719784 /// XM_006719785 /// XM_006719786 /// XM_006719787 /// XM_006719788 /// XM_006719789 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008045 // motor neuron axon guidance // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0021785 // branchiomotor neuron axon guidance // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0048667 // cell morphogenesis involved in neuron differentiation // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -50.30 176.70 -4.61 0.00 0.01 -4.46
203521_s_at 203521_s_at NM_014345 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014345.1 /DEF=Homo sapiens endocrine regulator (HRIHFB2436), mRNA. /FEA=mRNA /GEN=HRIHFB2436 /PROD=endocrine regulator /DB_XREF=gi:7657183 /UG=Hs.48433 endocrine regulator /FL=gb:AF121141.1 gb:NM_014345.1 NM_014345 zinc finger protein 318 ZNF318 24149 NM_014345 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 44.58 53.26 4.61 0.00 0.01 -4.46
213011_s_at 213011_s_at BF116254 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF116254 /FEA=EST /DB_XREF=gi:10985730 /DB_XREF=est:7n79g04.x1 /CLONE=IMAGE:3570991 /UG=Hs.83848 triosephosphate isomerase 1 BF116254 triosephosphate isomerase 1 TPI1 7167 NM_000365 /// NM_001159287 /// NM_001258026 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0019682 // glyceraldehyde-3-phosphate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004807 // triose-phosphate isomerase activity // not recorded /// 0004807 // triose-phosphate isomerase activity // non-traceable author statement /// 0004807 // triose-phosphate isomerase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation -299.25 1242.20 -4.61 0.00 0.01 -4.46
212034_s_at 212034_s_at AB028990 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB028990.1 /DEF=Homo sapiens mRNA for KIAA1067 protein, partial cds. /FEA=mRNA /GEN=KIAA1067 /PROD=KIAA1067 protein /DB_XREF=gi:5689470 /UG=Hs.325530 KIAA1067 protein AB028990 exocyst complex component 7 EXOC7 23265 NM_001013839 /// NM_001145297 /// NM_001145298 /// NM_001145299 /// NM_001282313 /// NM_001282314 /// NM_015219 /// XM_006721786 /// XM_006721787 /// XM_006721788 /// XM_006721789 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000145 // exocyst // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0032584 // growth cone membrane // inferred from electronic annotation /// 0034451 // centriolar satellite // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 44.97 138.31 4.61 0.00 0.01 -4.46
201375_s_at 201375_s_at NM_004156 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004156.1 /DEF=Homo sapiens protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform (PPP2CB), mRNA. /FEA=mRNA /GEN=PPP2CB /PROD=protein phosphatase 2 (formerly 2A), catalyticsubunit, beta isoform /DB_XREF=gi:4758951 /UG=Hs.80350 protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform /FL=gb:NM_004156.1 NM_004156 protein phosphatase 2, catalytic subunit, beta isozyme PPP2CB 5516 NM_001009552 /// NM_004156 0006470 // protein dephosphorylation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0042221 // response to chemical // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0046580 // negative regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // traceable author statement /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity 174.33 943.76 4.61 0.00 0.01 -4.46
215380_s_at 215380_s_at AK021779 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK021779.1 /DEF=Homo sapiens cDNA FLJ11717 fis, clone HEMBA1005241. /FEA=mRNA /DB_XREF=gi:10433033 /UG=Hs.288649 hypothetical protein MGC3077 AK021779 gamma-glutamylcyclotransferase GGCT 79017 NM_001199815 /// NM_001199816 /// NM_001199817 /// NM_024051 /// NR_037669 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0006750 // glutathione biosynthetic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1901687 // glutathione derivative biosynthetic process // traceable author statement 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003839 // gamma-glutamylcyclotransferase activity // inferred from direct assay /// 0003839 // gamma-glutamylcyclotransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 129.55 299.65 4.61 0.00 0.01 -4.46
208855_s_at 208855_s_at AF083420 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF083420.1 /DEF=Homo sapiens brain-specific STE20-like protein kinase 3 (STK3) mRNA, complete cds. /FEA=mRNA /GEN=STK3 /PROD=brain-specific STE20-like protein kinase 3 /DB_XREF=gi:5326765 /UG=Hs.168913 serinethreonine kinase 24 (Ste20, yeast homolog) /FL=gb:AF083420.1 AF083420 serine/threonine kinase 24 STK24 8428 NM_001032296 /// NM_001286649 /// NM_003576 /// XM_005254078 /// XM_005254079 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048679 // regulation of axon regeneration // inferred from mutant phenotype /// 0097194 // execution phase of apoptosis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -117.65 647.23 -4.61 0.00 0.01 -4.46
205920_at 205920_at NM_003043 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003043.1 /DEF=Homo sapiens solute carrier family 6 (neurotransmitter transporter, taurine), member 6 (SLC6A6), mRNA. /FEA=mRNA /GEN=SLC6A6 /PROD=solute carrier family 6 (neurotransmittertransporter, taurine), member 6 /DB_XREF=gi:4507044 /UG=Hs.1194 solute carrier family 6 (neurotransmitter transporter, taurine), member 6 /FL=gb:NM_003043.1 gb:U16120.1 gb:U09220.1 NM_003043 solute carrier family 6 (neurotransmitter transporter), member 6 SLC6A6 6533 NM_001134367 /// NM_001134368 /// NM_003043 /// NR_103507 /// XM_006713307 /// XR_427286 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0015734 // taurine transport // inferred from electronic annotation /// 0015849 // organic acid transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005368 // taurine transmembrane transporter activity // inferred from electronic annotation /// 0005369 // taurine:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0030977 // taurine binding // inferred from electronic annotation -35.90 24.40 -4.60 0.00 0.01 -4.46
217899_at 217899_at NM_017727 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017727.1 /DEF=Homo sapiens hypothetical protein FLJ20254 (FLJ20254), mRNA. /FEA=mRNA /GEN=FLJ20254 /PROD=hypothetical protein FLJ20254 /DB_XREF=gi:8923227 /UG=Hs.15356 hypothetical protein FLJ20254 /FL=gb:BC002467.1 gb:NM_017727.1 NM_017727 transmembrane protein 214 TMEM214 54867 NM_001083590 /// NM_017727 /// XM_005264381 /// XM_005264382 /// XM_005264383 /// XM_006712036 /// XR_244942 /// XR_426985 0006915 // apoptotic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 72.80 153.00 4.60 0.00 0.01 -4.46
209089_at 209089_at BC001267 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001267.1 /DEF=Homo sapiens, RAB5A, member RAS oncogene family, clone MGC:5048, mRNA, complete cds. /FEA=mRNA /PROD=RAB5A, member RAS oncogene family /DB_XREF=gi:12654846 /UG=Hs.73957 RAB5A, member RAS oncogene family /FL=gb:BC001267.1 BC001267 RAB5A, member RAS oncogene family RAB5A 5868 NM_001292048 /// NM_004162 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045921 // positive regulation of exocytosis // inferred from mutant phenotype /// 0051489 // regulation of filopodium assembly // inferred from direct assay /// 2000286 // receptor internalization involved in canonical Wnt signaling pathway // inferred from mutant phenotype 0001726 // ruffle // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // traceable author statement /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043195 // terminal bouton // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay -207.05 770.42 -4.60 0.00 0.01 -4.46
208685_x_at 208685_x_at AA902767 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA902767 /FEA=EST /DB_XREF=gi:3037890 /DB_XREF=est:ok72a04.s1 /CLONE=IMAGE:1519470 /UG=Hs.75243 bromodomain-containing 2 /FL=gb:NM_005104.2 gb:M80613.1 gb:D42040.1 AA902767 bromodomain containing 2 BRD2 6046 NM_001113182 /// NM_001199455 /// NM_001199456 /// NM_001291986 /// NM_005104 /// NR_037625 /// XR_241911 /// XR_246967 /// XR_247375 /// XR_247406 /// XR_247427 0006334 // nucleosome assembly // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0007283 // spermatogenesis // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay -123.85 365.93 -4.60 0.00 0.01 -4.46
209307_at 209307_at AB014540 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB014540.1 /DEF=Homo sapiens mRNA for KIAA0640 protein, partial cds. /FEA=mRNA /GEN=KIAA0640 /PROD=KIAA0640 protein /DB_XREF=gi:3327093 /UG=Hs.153026 SWAP-70 protein /FL=gb:BC000616.1 gb:AF210818.1 AB014540 SWAP switching B-cell complex 70kDa subunit SWAP70 23075 NM_015055 /// XM_005252829 /// XM_005252830 0016444 // somatic cell DNA recombination // inferred from electronic annotation /// 0045190 // isotype switching // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation 105.42 323.74 4.59 0.00 0.01 -4.46
212184_s_at 212184_s_at AL117407 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL117407.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434D2050 (from clone DKFZp434D2050); partial cds. /FEA=mRNA /GEN=DKFZp434D2050 /PROD=hypothetical protein /DB_XREF=gi:5911992 /UG=Hs.109727 TAK1-binding protein 2; KIAA0733 protein AL117407 TGF-beta activated kinase 1/MAP3K7 binding protein 2 TAB2 23118 NM_001292034 /// NM_001292035 /// NM_015093 /// NM_145342 /// XM_006715403 0000187 // activation of MAPK activity // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007254 // JNK cascade // traceable author statement /// 0007507 // heart development // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0045087 // innate immune response // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070530 // K63-linked polyubiquitin binding // inferred from direct assay -80.75 170.25 -4.59 0.00 0.01 -4.46
217373_x_at 217373_x_at AJ276888 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ276888.1 /DEF=Homo sapiens non-productive mRNA for p53-binding protein, alternatively spliced variant DS2 (MDM2 gene). /FEA=CDS /GEN=MDM2 /PROD=p53-binding protein /DB_XREF=gi:7327962 /UG=Hs.272346 Homo sapiens non-productive mRNA for p53-binding protein, alternatively spliced variant DS2 (MDM2 gene) AJ276888 MDM2 proto-oncogene, E3 ubiquitin protein ligase MDM2 4193 NM_001145336 /// NM_001145337 /// NM_001145339 /// NM_001145340 /// NM_001278462 /// NM_002392 /// NM_006878 /// NM_006879 /// NM_006880 /// NM_006881 /// NM_006882 /// NM_032739 /// XM_005268872 /// XM_006719399 /// XM_006719400 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006461 // protein complex assembly // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from mutant phenotype /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007089 // traversing start control point of mitotic cell cycle // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0009743 // response to carbohydrate // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010955 // negative regulation of protein processing // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0018205 // peptidyl-lysine modification // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031648 // protein destabilization // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0034504 // protein localization to nucleus // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from direct assay /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045184 // establishment of protein localization // inferred from direct assay /// 0045472 // response to ether // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from expression pattern /// 0046827 // positive regulation of protein export from nucleus // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0071157 // negative regulation of cell cycle arrest // inferred from direct assay /// 0071229 // cellular response to acid // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // inferred from electronic annotation /// 0071301 // cellular response to vitamin B1 // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0071312 // cellular response to alkaloid // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation /// 0071391 // cellular response to estrogen stimulus // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0071494 // cellular response to UV-C // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016604 // nuclear body // inferred from direct assay /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0002039 // p53 binding // inferred from physical interaction /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042975 // peroxisome proliferator activated receptor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0097110 // scaffold protein binding // inferred from electronic annotation -60.32 63.21 -4.59 0.00 0.01 -4.46
204992_s_at 204992_s_at NM_002628 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002628.1 /DEF=Homo sapiens profilin 2 (PFN2), mRNA. /FEA=mRNA /GEN=PFN2 /PROD=profilin 2 /DB_XREF=gi:4505750 /UG=Hs.91747 profilin 2 /FL=gb:L10678.1 gb:NM_002628.1 NM_002628 profilin 2 PFN2 5217 NM_002628 /// NM_053024 0008064 // regulation of actin polymerization or depolymerization // non-traceable author statement /// 0010633 // negative regulation of epithelial cell migration // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030837 // negative regulation of actin filament polymerization // inferred from direct assay /// 0030838 // positive regulation of actin filament polymerization // inferred from genetic interaction /// 0032233 // positive regulation of actin filament bundle assembly // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 1900028 // negative regulation of ruffle assembly // inferred from mutant phenotype /// 2000300 // regulation of synaptic vesicle exocytosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // non-traceable author statement /// 0043195 // terminal bouton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000774 // adenyl-nucleotide exchange factor activity // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // non-traceable author statement /// 0003785 // actin monomer binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay 176.43 720.74 4.59 0.00 0.01 -4.46
214459_x_at 214459_x_at M12679 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:M12679.1 /DEF=Human Cw1 antigen mRNA, complete cds. /FEA=mRNA /GEN=HLA-C /DB_XREF=gi:187911 /UG=Hs.274485 Cw1 antigen /FL=gb:M12679.1 M12679 major histocompatibility complex, class I, C HLA-C 3107 NM_001243042 /// NM_002117 0001539 // cilium or flagellum-dependent cell motility // non-traceable author statement /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0006955 // immune response // non-traceable author statement /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005858 // axonemal dynein complex // non-traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032395 // MHC class II receptor activity // non-traceable author statement /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0046977 // TAP binding // inferred from direct assay -278.95 682.42 -4.59 0.00 0.01 -4.46
209118_s_at 209118_s_at AF141347 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF141347.1 /DEF=Homo sapiens hum-a-tub2 alpha-tubulin mRNA, complete cds. /FEA=mRNA /PROD=alpha-tubulin /DB_XREF=gi:4929133 /UG=Hs.272897 Tubulin, alpha, brain-specific /FL=gb:AF141347.1 gb:NM_006009.1 AF141347 tubulin, alpha 1a TUBA1A 7846 NM_001270399 /// NM_001270400 /// NM_006009 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 793.25 2680.10 4.59 0.00 0.01 -4.46
201242_s_at 201242_s_at BC000006 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000006.1 /DEF=Homo sapiens, ATPase, Na+K+ transporting, beta 1 polypeptide, clone MGC:1798, mRNA, complete cds. /FEA=mRNA /PROD=ATPase, Na+K+ transporting, beta 1 polypeptide /DB_XREF=gi:12652534 /UG=Hs.78629 ATPase, Na+K+ transporting, beta 1 polypeptide /FL=gb:BC000006.1 gb:NM_001677.1 BC000006 ATPase, Na+/K+ transporting, beta 1 polypeptide ATP1B1 481 NM_001001787 /// NM_001677 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030001 // metal ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0035725 // sodium ion transmembrane transport // inferred from electronic annotation /// 0035725 // sodium ion transmembrane transport // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0023026 // MHC class II protein complex binding // inferred from direct assay -214.10 449.12 -4.59 0.00 0.01 -4.46
204334_at 204334_at AA488672 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA488672 /FEA=EST /DB_XREF=gi:2216103 /DB_XREF=est:ab40d10.s1 /CLONE=IMAGE:843283 /UG=Hs.21599 Kruppel-like factor 7 (ubiquitous) /FL=gb:AB015132.1 gb:NM_003709.1 AA488672 Kruppel-like factor 7 (ubiquitous) KLF7 8609 NM_001270942 /// NM_001270943 /// NM_001270944 /// NM_003709 /// NR_073108 /// XM_005246926 /// XM_006712815 /// XM_006712816 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -188.68 263.46 -4.59 0.00 0.01 -4.46
213127_s_at 213127_s_at BG230758 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG230758 /FEA=EST /DB_XREF=gi:12725810 /DB_XREF=est:naf39f08.x1 /CLONE=IMAGE:4143495 /UG=Hs.301756 ESTs, Weakly similar to T31475 hypothetical protein Y62F5A.1b - Caenorhabditis elegans C.elegans BG230758 mediator complex subunit 8 MED8 112950 NM_001001653 /// NM_052877 /// NM_201542 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0016592 // mediator complex // inferred from direct assay 0001104 // RNA polymerase II transcription cofactor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 48.82 61.41 4.59 0.00 0.01 -4.46
222036_s_at 222036_s_at AI859865 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI859865 /FEA=EST /DB_XREF=gi:5513481 /DB_XREF=est:wm21f03.x1 /CLONE=IMAGE:2436605 /UG=Hs.154443 minichromosome maintenance deficient (S. cerevisiae) 4 AI859865 minichromosome maintenance complex component 4 MCM4 4173 NM_005914 /// NM_182746 /// XM_005251234 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // non-traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006268 // DNA unwinding involved in DNA replication // inferred from electronic annotation /// 0006270 // DNA replication initiation // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0015979 // photosynthesis // inferred from electronic annotation /// 0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0042555 // MCM complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016851 // magnesium chelatase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 96.80 93.75 4.59 0.00 0.01 -4.46
212213_x_at 212213_x_at AB011139 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011139.1 /DEF=Homo sapiens mRNA for KIAA0567 protein, partial cds. /FEA=mRNA /GEN=KIAA0567 /PROD=KIAA0567 protein /DB_XREF=gi:3043657 /UG=Hs.147946 optic atrophy 1 (autosomal dominant) AB011139 optic atrophy 1 (autosomal dominant) OPA1 4976 NM_015560 /// NM_130831 /// NM_130832 /// NM_130833 /// NM_130834 /// NM_130835 /// NM_130836 /// NM_130837 0000266 // mitochondrial fission // traceable author statement /// 0001843 // neural tube closure // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0007005 // mitochondrion organization // non-traceable author statement /// 0007007 // inner mitochondrial membrane organization // inferred from direct assay /// 0007601 // visual perception // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // inferred from direct assay /// 0008053 // mitochondrial fusion // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0019896 // axon transport of mitochondrion // traceable author statement /// 0050896 // response to stimulus // inferred from electronic annotation /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0090398 // cellular senescence // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // non-traceable author statement /// 0005758 // mitochondrial intermembrane space // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0030425 // dendrite // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 97.63 193.04 4.59 0.00 0.01 -4.46
210793_s_at 210793_s_at U41815 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U41815.1 /DEF=Human nucleoporin 98 (NUP98) mRNA, complete cds. /FEA=mRNA /GEN=NUP98 /PROD=nucleoporin 98 /DB_XREF=gi:1184172 /UG=Hs.112255 nucleoporin 98kD /FL=gb:U41815.1 U41815 nucleoporin 98kDa NUP98 4928 NM_005387 /// NM_016320 /// NM_139131 /// NM_139132 /// XM_005252950 /// XM_006718240 /// XM_006718241 /// XM_006718242 /// XR_428845 0000059 // protein import into nucleus, docking // non-traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006260 // DNA replication // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // traceable author statement /// 0006999 // nuclear pore organization // non-traceable author statement /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051292 // nuclear pore complex assembly // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031080 // nuclear pore outer ring // inferred from direct assay /// 0031080 // nuclear pore outer ring // non-traceable author statement /// 0031965 // nuclear membrane // inferred from direct assay /// 0034399 // nuclear periphery // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from direct assay /// 0044615 // nuclear pore nuclear basket // inferred from direct assay 0005215 // transporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017056 // structural constituent of nuclear pore // inferred from mutant phenotype /// 0017056 // structural constituent of nuclear pore // non-traceable author statement /// 0042277 // peptide binding // inferred from electronic annotation 39.35 48.17 4.58 0.00 0.01 -4.46
210776_x_at 210776_x_at M31222 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M31222.1 /DEF=Human e12 protein (E2A) mRNA, complete cds. /FEA=mRNA /GEN=TCF3 /DB_XREF=gi:181905 /UG=Hs.101047 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12E47) /FL=gb:M31222.1 M31222 transcription factor 3 TCF3 6929 NM_001136139 /// NM_003200 /// XM_005259620 /// XM_006722852 /// XM_006722853 /// XM_006722854 /// XM_006722855 /// XM_006722856 /// XM_006722857 /// XM_006722858 /// XM_006722859 /// XM_006722860 /// XM_006722861 /// XM_006722862 /// XM_006722863 /// XR_430150 /// XR_430151 /// XR_430152 /// XR_430153 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0002326 // B cell lineage commitment // inferred from direct assay /// 0002326 // B cell lineage commitment // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030098 // lymphocyte differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // non-traceable author statement /// 0030890 // positive regulation of B cell proliferation // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033152 // immunoglobulin V(D)J recombination // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048468 // cell development // inferred from electronic annotation /// 0048541 // Peyer's patch development // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 2000045 // regulation of G1/S transition of mitotic cell cycle // inferred from direct assay 0000788 // nuclear nucleosome // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070491 // repressing transcription factor binding // inferred from physical interaction /// 0070644 // vitamin D response element binding // inferred from direct assay /// 0070888 // E-box binding // inferred from direct assay /// 0070888 // E-box binding // inferred from sequence or structural similarity -104.27 265.54 -4.58 0.00 0.01 -4.46
216202_s_at 216202_s_at U15555 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U15555.1 /DEF=Human serine palmitoyltransferase (LCB2) mRNA, partial cds. /FEA=mRNA /GEN=LCB2 /PROD=serine palmitoyltransferase /DB_XREF=gi:1001944 /UG=Hs.59403 serine palmitoyltransferase, long chain base subunit 2 U15555 serine palmitoyltransferase, long chain base subunit 2 SPTLC2 9517 NM_004863 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006686 // sphingomyelin biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046511 // sphinganine biosynthetic process // inferred from electronic annotation /// 0046512 // sphingosine biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0017059 // serine C-palmitoyltransferase complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation -92.85 112.67 -4.58 0.00 0.01 -4.46
211000_s_at 211000_s_at AB015706 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB015706.1 /DEF=Homo sapiens mRNA for gp130 of the rheumatoid arthritis antigenic peptide-bearing soluble form (gp130-RAPS), complete cds. /FEA=mRNA /GEN=gp130 /PROD=gp130 of the rheumatoid arthritis antigenicpeptide-bearing soluble form (gp130-RAPS) /DB_XREF=gi:4972293 /UG=Hs.82065 interleukin 6 signal transducer (gp130, oncostatin M receptor) /FL=gb:AB015706.1 AB015706 interleukin 6 signal transducer IL6ST 3572 NM_001190981 /// NM_002184 /// NM_175767 /// NR_120480 /// XM_005248496 0002675 // positive regulation of acute inflammatory response // inferred by curator /// 0002821 // positive regulation of adaptive immune response // inferred by curator /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // traceable author statement /// 0010613 // positive regulation of cardiac muscle hypertrophy // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0034097 // response to cytokine // inferred from direct assay /// 0038154 // interleukin-11-mediated signaling pathway // inferred from electronic annotation /// 0038165 // oncostatin-M-mediated signaling pathway // inferred from mutant phenotype /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from genetic interaction /// 0070102 // interleukin-6-mediated signaling pathway // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from direct assay /// 0070106 // interleukin-27-mediated signaling pathway // inferred from mutant phenotype /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005896 // interleukin-6 receptor complex // inferred from direct assay /// 0005900 // oncostatin-M receptor complex // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from direct assay 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from genetic interaction /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // inferred from genetic interaction /// 0004924 // oncostatin-M receptor activity // inferred from direct assay /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from physical interaction /// 0005138 // interleukin-6 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0019838 // growth factor binding // inferred from physical interaction /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0045509 // interleukin-27 receptor activity // inferred by curator -176.32 247.96 -4.58 0.00 0.01 -4.46
219547_at 219547_at NM_004376 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004376.1 /DEF=Homo sapiens COX15 (yeast) homolog, cytochrome c oxidase assembly protein (COX15), mRNA. /FEA=mRNA /GEN=COX15 /PROD=COX15 (yeast) homolog, cytochrome c oxidaseassembly protein /DB_XREF=gi:4758035 /UG=Hs.226581 COX15 (yeast) homolog, cytochrome c oxidase assembly protein /FL=gb:AF044323.1 gb:NM_004376.1 NM_004376 cytochrome c oxidase assembly homolog 15 (yeast) COX15 1355 NM_004376 /// NM_078470 /// XM_005269539 /// XM_006717633 /// XM_006717634 0006123 // mitochondrial electron transport, cytochrome c to oxygen // inferred by curator /// 0006778 // porphyrin-containing compound metabolic process // traceable author statement /// 0006783 // heme biosynthetic process // traceable author statement /// 0006784 // heme a biosynthetic process // inferred from electronic annotation /// 0006784 // heme a biosynthetic process // inferred from genetic interaction /// 0007585 // respiratory gaseous exchange // traceable author statement /// 0008535 // respiratory chain complex IV assembly // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0045333 // cellular respiration // inferred by curator /// 0055114 // oxidation-reduction process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from genetic interaction /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004129 // cytochrome-c oxidase activity // inferred from genetic interaction /// 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation 34.80 83.20 4.58 0.00 0.01 -4.46
218420_s_at 218420_s_at NM_025138 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025138.1 /DEF=Homo sapiens hypothetical protein FLJ12661 (FLJ12661), mRNA. /FEA=mRNA /GEN=FLJ12661 /PROD=hypothetical protein FLJ12661 /DB_XREF=gi:13376720 /UG=Hs.318526 hypothetical protein FLJ12661 /FL=gb:NM_025138.1 NM_025138 proline and serine rich 1 PROSER1 80209 NM_025138 /// NM_170719 /// XM_005266545 -63.07 132.84 -4.58 0.00 0.01 -4.46
214911_s_at 214911_s_at S78771 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S78771.1 /DEF=NAT=CpG island-associated gene human, mRNA, 1741 nt. /FEA=mRNA /DB_XREF=gi:244232 /UG=Hs.75243 bromodomain-containing 2 S78771 bromodomain containing 2 BRD2 6046 NM_001113182 /// NM_001199455 /// NM_001199456 /// NM_001291986 /// NM_005104 /// NR_037625 /// XR_241911 /// XR_246967 /// XR_247375 /// XR_247406 /// XR_247427 0006334 // nucleosome assembly // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0007283 // spermatogenesis // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay -66.93 255.76 -4.58 0.00 0.01 -4.46
204341_at 204341_at NM_006470 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006470.1 /DEF=Homo sapiens estrogen-responsive B box protein (EBBP), mRNA. /FEA=mRNA /GEN=EBBP /PROD=estrogen-responsive B box protein /DB_XREF=gi:5453643 /UG=Hs.241305 estrogen-responsive B box protein /FL=gb:AF096870.1 gb:NM_006470.1 NM_006470 tripartite motif containing 16 TRIM16 10626 NM_006470 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0043967 // histone H4 acetylation // inferred from direct assay /// 0045618 // positive regulation of keratinocyte differentiation // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0046683 // response to organophosphorus // inferred from expression pattern /// 0048386 // positive regulation of retinoic acid receptor signaling pathway // inferred from direct assay /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from mutant phenotype /// 0060416 // response to growth hormone // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019966 // interleukin-1 binding // inferred from physical interaction /// 0032089 // NACHT domain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -54.32 140.96 -4.57 0.00 0.01 -4.46
203301_s_at 203301_s_at NM_021145 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021145.1 /DEF=Homo sapiens cyclin D binding Myb-like transcription factor 1 (DMTF), mRNA. /FEA=mRNA /GEN=DMTF /PROD=cyclin D binding Myb-like transcription factor1 /DB_XREF=gi:10863946 /UG=Hs.5671 cyclin D binding Myb-like transcription factor 1 /FL=gb:NM_021145.1 gb:AF084530.1 NM_021145 cyclin D binding myb-like transcription factor 1 DMTF1 9988 NM_001142326 /// NM_001142327 /// NM_021145 /// NR_024549 /// NR_024550 /// XM_005250734 /// XM_006716197 /// XM_006716198 /// XM_006716199 /// XM_006716200 /// XM_006716201 /// XM_006716202 /// XM_006716203 /// XM_006716204 /// XM_006716205 /// XM_006716206 /// XR_428190 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement 71.33 97.36 4.57 0.00 0.01 -4.46
209042_s_at 209042_s_at BC001738 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001738.1 /DEF=Homo sapiens, Similar to ubiquitin-conjugating enzyme E2G 2 (homologous to yeast UBC7), clone MGC:1589, mRNA, complete cds. /FEA=mRNA /PROD=Similar to ubiquitin-conjugating enzyme E2G 2(homologous to yeast UBC7) /DB_XREF=gi:12804628 /UG=Hs.192853 ubiquitin-conjugating enzyme E2G 2 (homologous to yeast UBC7) /FL=gb:BC001738.1 gb:AF032456.1 gb:NM_003343.1 BC001738 ubiquitin-conjugating enzyme E2G 2 UBE2G2 7327 NM_001202489 /// NM_003343 /// NM_182688 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 49.83 69.26 4.57 0.00 0.01 -4.46
202529_at 202529_at NM_002766 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002766.1 /DEF=Homo sapiens phosphoribosyl pyrophosphate synthetase-associated protein 1 (PRPSAP1), mRNA. /FEA=mRNA /GEN=PRPSAP1 /PROD=phosphoribosyl pyrophosphatesynthetase-associated protein 1 /DB_XREF=gi:4506130 /UG=Hs.77498 phosphoribosyl pyrophosphate synthetase-associated protein 1 /FL=gb:D61391.1 gb:NM_002766.1 NM_002766 phosphoribosyl pyrophosphate synthetase-associated protein 1 PRPSAP1 5635 NM_002766 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0033673 // negative regulation of kinase activity // inferred from electronic annotation 0002189 // ribose phosphate diphosphokinase complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // traceable author statement /// 0019900 // kinase binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation 71.53 325.19 4.57 0.00 0.01 -4.46
201507_at 201507_at NM_002622 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002622.2 /DEF=Homo sapiens prefoldin 1 (PFDN1), mRNA. /FEA=mRNA /GEN=PFDN1 /PROD=prefoldin 1 /DB_XREF=gi:12408673 /UG=Hs.132881 prefoldin 1 /FL=gb:NM_002622.2 NM_002622 prefoldin subunit 1 PFDN1 5201 NM_002622 /// XM_005268465 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007049 // cell cycle // traceable author statement /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0042113 // B cell activation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0016272 // prefoldin complex // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0051082 // unfolded protein binding // inferred from electronic annotation -56.32 301.09 -4.57 0.00 0.01 -4.46
219155_at 219155_at NM_012417 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012417.1 /DEF=Homo sapiens retinal degeneration B beta (RDGBB), mRNA. /FEA=mRNA /GEN=RDGBB /PROD=retinal degeneration B beta /DB_XREF=gi:6912623 /UG=Hs.109219 retinal degeneration B beta /FL=gb:AF171102.1 gb:NM_012417.1 NM_012417 phosphatidylinositol transfer protein, cytoplasmic 1 PITPNC1 26207 NM_012417 /// NM_181671 /// XM_005257216 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0015914 // phospholipid transport // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0008526 // phosphatidylinositol transporter activity // inferred from mutant phenotype -38.10 73.65 -4.57 0.00 0.01 -4.46
201867_s_at 201867_s_at AW968555 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW968555 /FEA=EST /DB_XREF=gi:8158396 /DB_XREF=est:EST380631 /UG=Hs.76536 transducin (beta)-like 1 /FL=gb:NM_005647.1 AW968555 transducin (beta)-like 1X-linked TBL1X 6907 NM_001139466 /// NM_001139467 /// NM_001139468 /// NM_005647 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006508 // proteolysis // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // traceable author statement /// 0007605 // sensory perception of sound // inferred from mutant phenotype /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from mutant phenotype 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from genetic interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay -38.77 70.14 -4.57 0.00 0.01 -4.46
204571_x_at 204571_x_at BE797213 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE797213 /FEA=EST /DB_XREF=gi:10218411 /DB_XREF=est:601587854F1 /CLONE=IMAGE:3942276 /UG=Hs.11774 protein (peptidyl-prolyl cistrans isomerase) NIMA-interacting, 4 (parvulin) /FL=gb:BC005234.1 gb:AF143096.1 gb:AB009690.1 gb:NM_006223.1 BE797213 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) PIN4 5303 NM_001170747 /// NM_006223 /// NR_033187 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006457 // protein folding // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030684 // preribosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003681 // bent DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 83.15 185.15 4.56 0.00 0.01 -4.46
220079_s_at 220079_s_at NM_018391 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018391.1 /DEF=Homo sapiens hypothetical protein FLJ11328 (FLJ11328), mRNA. /FEA=mRNA /GEN=FLJ11328 /PROD=hypothetical protein FLJ11328 /DB_XREF=gi:8922996 /UG=Hs.178518 hypothetical protein FLJ11328 /FL=gb:NM_018391.1 NM_018391 ubiquitin specific peptidase 48 USP48 84196 NM_001032730 /// NM_032236 /// XM_005246009 /// XM_005246010 /// XM_006710949 /// XM_006710950 /// XM_006710951 /// XM_006710952 /// XM_006710953 /// XM_006710954 /// XM_006710955 /// XM_006710956 /// XR_426634 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation 185.35 371.15 4.56 0.00 0.01 -4.46
211962_s_at 211962_s_at BG250310 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG250310 /FEA=EST /DB_XREF=gi:12760126 /DB_XREF=est:602362443F1 /CLONE=IMAGE:4470898 /UG=Hs.85155 butyrate response factor 1 (EGF-response factor 1) BG250310 ZFP36 ring finger protein-like 1 ZFP36L1 677 NM_001244698 /// NM_001244701 /// NM_004926 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -144.28 382.86 -4.56 0.00 0.01 -4.46
221535_at 221535_at AL136897 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136897.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434E248 (from clone DKFZp434E248); complete cds. /FEA=mRNA /GEN=DKFZp434E248 /PROD=hypothetical protein /DB_XREF=gi:12053290 /UG=Hs.301724 Homo sapiens mRNA; cDNA DKFZp434E248 (from clone DKFZp434E248); complete cds /FL=gb:AL136897.1 AL136897 large 60S subunit nuclear export GTPase 1 LSG1 55341 NM_018385 0006184 // GTP catabolic process // not recorded /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042254 // ribosome biogenesis // not recorded /// 0051168 // nuclear export // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0015030 // Cajal body // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from direct assay /// 0005525 // GTP binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 73.23 149.71 4.56 0.00 0.01 -4.46
204467_s_at 204467_s_at NM_000345 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000345.2 /DEF=Homo sapiens synuclein, alpha (non A4 component of amyloid precursor) (SNCA), transcript variant NACP140, mRNA. /FEA=mRNA /GEN=SNCA /PROD=alpha-synuclein isoform NACP140 /DB_XREF=gi:6806896 /UG=Hs.76930 synuclein, alpha (non A4 component of amyloid precursor) /FL=gb:L08850.1 gb:NM_000345.2 NM_000345 synuclein, alpha (non A4 component of amyloid precursor) SNCA 6622 NM_000345 /// NM_001146054 /// NM_001146055 /// NM_007308 0001774 // microglial cell activation // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001956 // positive regulation of neurotransmitter secretion // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006638 // neutral lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007006 // mitochondrial membrane organization // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0010040 // response to iron(II) ion // inferred from direct assay /// 0010517 // regulation of phospholipase activity // inferred from direct assay /// 0010642 // negative regulation of platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0014048 // regulation of glutamate secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // traceable author statement /// 0031115 // negative regulation of microtubule polymerization // inferred from direct assay /// 0031623 // receptor internalization // inferred from direct assay /// 0031648 // protein destabilization // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032410 // negative regulation of transporter activity // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0032769 // negative regulation of monooxygenase activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // inferred from direct assay /// 0040012 // regulation of locomotion // inferred from electronic annotation /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // traceable author statement /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042775 // mitochondrial ATP synthesis coupled electron transport // inferred from electronic annotation /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043206 // extracellular fibril organization // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from direct assay /// 0045920 // negative regulation of exocytosis // inferred from mutant phenotype /// 0045963 // negative regulation of dopamine metabolic process // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // inferred from sequence or structural similarity /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050808 // synapse organization // inferred from electronic annotation /// 0050812 // regulation of acyl-CoA biosynthetic process // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051583 // dopamine uptake involved in synaptic transmission // traceable author statement /// 0051585 // negative regulation of dopamine uptake involved in synaptic transmission // inferred from direct assay /// 0051612 // negative regulation of serotonin uptake // inferred from direct assay /// 0051622 // negative regulation of norepinephrine uptake // inferred from direct assay /// 0055074 // calcium ion homeostasis // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from direct assay /// 0070495 // negative regulation of thrombin receptor signaling pathway // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from direct assay /// 0071280 // cellular response to copper ion // inferred from direct assay /// 0071872 // cellular response to epinephrine stimulus // traceable author statement /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 1901214 // regulation of neuron death // inferred from genetic interaction 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // traceable author statement /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016234 // inclusion body // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // inferred from direct assay /// 0043195 // terminal bouton // inferred from electronic annotation /// 0043205 // fibril // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0005504 // fatty acid binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0019894 // kinesin binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043014 // alpha-tubulin binding // inferred from physical interaction /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0045502 // dynein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from direct assay /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from direct assay /// 0060961 // phospholipase D inhibitor activity // inferred from direct assay 56.77 71.66 4.56 0.00 0.01 -4.46
48531_at 48531_at AA522816 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA522816:ni40e12.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-979342 /clone_end=3' /gb=AA522816 /gi=2263528 /ug=Hs.173789 /len=564 AA522816 TNFAIP3 interacting protein 2 TNIP2 79155 NM_001161527 /// NM_001292016 /// NM_024309 /// XM_005248010 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0023035 // CD40 signaling pathway // inferred from sequence or structural similarity /// 0034134 // toll-like receptor 2 signaling pathway // inferred from sequence or structural similarity /// 0034138 // toll-like receptor 3 signaling pathway // inferred from sequence or structural similarity /// 0034162 // toll-like receptor 9 signaling pathway // inferred from sequence or structural similarity /// 0043032 // positive regulation of macrophage activation // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050871 // positive regulation of B cell activation // inferred from sequence or structural similarity /// 0070498 // interleukin-1-mediated signaling pathway // inferred from sequence or structural similarity /// 0071222 // cellular response to lipopolysaccharide // inferred from sequence or structural similarity /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from direct assay /// 0031593 // polyubiquitin binding // inferred from direct assay -59.08 186.16 -4.56 0.00 0.01 -4.46
200605_s_at 200605_s_at NM_002734 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002734.1 /DEF=Homo sapiens protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) (PRKAR1A), mRNA. /FEA=mRNA /GEN=PRKAR1A /PROD=protein kinase, cAMP-dependent, regulatory, typeI, alpha /DB_XREF=gi:4506062 /UG=Hs.183037 protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) /FL=gb:M18468.1 gb:M33336.1 gb:NM_002734.1 NM_002734 protein kinase, cAMP-dependent, regulatory, type I, alpha PRKAR1A 5573 NM_001276289 /// NM_001276290 /// NM_001278433 /// NM_002734 /// NM_212471 /// NM_212472 0001707 // mesoderm formation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007143 // female meiotic division // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045835 // negative regulation of meiosis // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 2000480 // negative regulation of cAMP-dependent protein kinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction 130.38 612.04 4.55 0.00 0.01 -4.46
202502_at 202502_at NM_000016 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000016.1 /DEF=Homo sapiens acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain (ACADM), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=ACADM /PROD=acyl-Coenzyme A dehydrogenase, C-4 to C-12straight chain proenzyme /DB_XREF=gi:4557230 /UG=Hs.79158 acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain /FL=gb:BC005377.1 gb:M16827.1 gb:NM_000016.1 gb:AF251043.1 NM_000016 acyl-CoA dehydrogenase, C-4 to C-12 straight chain ACADM 34 NM_000016 /// NM_001127328 /// NM_001286042 /// NM_001286043 /// NM_001286044 /// NR_022013 0001889 // liver development // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0006082 // organic acid metabolic process // inferred from electronic annotation /// 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009437 // carnitine metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0019254 // carnitine metabolic process, CoA-linked // inferred from mutant phenotype /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from direct assay /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from mutant phenotype /// 0042594 // response to starvation // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045329 // carnitine biosynthetic process // inferred from mutant phenotype /// 0051791 // medium-chain fatty acid metabolic process // inferred from direct assay /// 0051793 // medium-chain fatty acid catabolic process // inferred from direct assay /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0030424 // axon // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003995 // acyl-CoA dehydrogenase activity // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from mutant phenotype /// 0003995 // acyl-CoA dehydrogenase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation /// 0070991 // medium-chain-acyl-CoA dehydrogenase activity // inferred from direct assay 88.10 173.25 4.55 0.00 0.01 -4.46
219821_s_at 219821_s_at NM_018988 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018988.1 /DEF=Homo sapiens hypothetical protein (FLJ20330), mRNA. /FEA=mRNA /GEN=FLJ20330 /PROD=hypothetical protein /DB_XREF=gi:9506674 /UG=Hs.61485 hypothetical protein /FL=gb:NM_018988.1 NM_018988 glucose-fructose oxidoreductase domain containing 1 GFOD1 54438 NM_001242628 /// NM_001242629 /// NM_001242630 /// NM_018988 /// NM_033069 /// NR_038459 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 62.58 113.46 4.55 0.00 0.01 -4.46
211776_s_at 211776_s_at BC006141 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006141.1 /DEF=Homo sapiens, Similar to erythrocyte protein band 4.1-like 3, clone MGC:13087, mRNA, complete cds. /FEA=mRNA /PROD=Similar to erythrocyte protein band 4.1-like 3 /DB_XREF=gi:13544008 /FL=gb:BC006141.1 BC006141 erythrocyte membrane protein band 4.1-like 3 EPB41L3 23136 NM_001281533 /// NM_001281534 /// NM_001281535 /// NM_012307 /// XM_005258085 /// XM_005258086 /// XM_005258087 /// XM_005258088 /// XM_005258089 /// XM_005258090 /// XM_005258091 /// XM_006722301 /// XM_006722302 /// XM_006722303 /// XM_006722304 /// XM_006722305 /// XM_006722306 /// XM_006722307 /// XM_006722308 /// XM_006722309 /// XM_006722310 /// XM_006722311 /// XM_006722312 /// XM_006722313 /// XM_006722314 /// XM_006722315 /// XM_006722316 0002175 // protein localization to paranode region of axon // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007016 // cytoskeletal anchoring at plasma membrane // traceable author statement /// 0008360 // regulation of cell shape // inferred from sequence or structural similarity /// 0030865 // cortical cytoskeleton organization // traceable author statement /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030913 // paranodal junction assembly // inferred from sequence or structural similarity /// 0043217 // myelin maintenance // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0071205 // protein localization to juxtaparanode region of axon // inferred from sequence or structural similarity /// 0072659 // protein localization to plasma membrane // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030673 // axolemma // inferred from sequence or structural similarity /// 0033270 // paranode region of axon // inferred from sequence or structural similarity /// 0044224 // juxtaparanode region of axon // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation -91.42 164.54 -4.55 0.00 0.01 -4.46
219006_at 219006_at NM_014165 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014165.1 /DEF=Homo sapiens HSPC125 protein (HSPC125), mRNA. /FEA=mRNA /GEN=HSPC125 /PROD=HSPC125 protein /DB_XREF=gi:7661785 /UG=Hs.5232 HSPC125 protein /FL=gb:AF060508.1 gb:AF161474.1 gb:NM_014165.1 NM_014165 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 NDUFAF4 29078 NM_014165 0032981 // mitochondrial respiratory chain complex I assembly // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation 55.43 190.11 4.55 0.00 0.01 -4.46
217791_s_at 217791_s_at NM_002860 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002860.1 /DEF=Homo sapiens pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) (PYCS), mRNA. /FEA=mRNA /GEN=PYCS /PROD=pyrroline-5-carboxylate synthetase (glutamategamma-semialdehyde synthetase) /DB_XREF=gi:4506348 /UG=Hs.114366 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) /FL=gb:U68758.1 gb:U76542.1 gb:NM_002860.1 NM_002860 aldehyde dehydrogenase 18 family, member A1 ALDH18A1 5832 NM_001017423 /// NM_002860 /// XM_006717933 0006536 // glutamate metabolic process // inferred from mutant phenotype /// 0006561 // proline biosynthetic process // inferred from mutant phenotype /// 0006592 // ornithine biosynthetic process // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019240 // citrulline biosynthetic process // inferred from mutant phenotype /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0055129 // L-proline biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004349 // glutamate 5-kinase activity // inferred from direct assay /// 0004350 // glutamate-5-semialdehyde dehydrogenase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 94.28 234.91 4.54 0.00 0.01 -4.46
212825_at 212825_at AI357401 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI357401 /FEA=EST /DB_XREF=gi:4109022 /DB_XREF=est:qy13d06.x1 /CLONE=IMAGE:2011883 /UG=Hs.173854 PAX transcription activation domain interacting protein 1 like AI357401 PAX interacting (with transcription-activation domain) protein 1 PAXIP1 22976 NM_007349 /// XM_005249536 /// XM_005249537 /// XM_005249539 /// XM_005249541 0000416 // positive regulation of histone H3-K36 methylation // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from direct assay /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0031398 // positive regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0035066 // positive regulation of histone acetylation // inferred from sequence or structural similarity /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0045830 // positive regulation of isotype switching // inferred from sequence or structural similarity /// 0051568 // histone H3-K4 methylation // inferred from direct assay /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from sequence or structural similarity /// 0060261 // positive regulation of transcription initiation from RNA polymerase II promoter // inferred from mutant phenotype /// 0060261 // positive regulation of transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0060612 // adipose tissue development // inferred from electronic annotation /// 0060717 // chorion development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 40.20 95.90 4.54 0.00 0.01 -4.46
203010_at 203010_at NM_003152 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003152.1 /DEF=Homo sapiens signal transducer and activator of transcription 5A (STAT5A), mRNA. /FEA=mRNA /GEN=STAT5A /PROD=signal transducer and activator of transcription5A /DB_XREF=gi:4507256 /UG=Hs.167503 signal transducer and activator of transcription 5A /FL=gb:U43185.1 gb:NM_003152.1 gb:L41142.1 NM_003152 signal transducer and activator of transcription 5A STAT5A 6776 NM_001288718 /// NM_001288719 /// NM_001288720 /// NM_003152 /// XM_005257624 0000255 // allantoin metabolic process // inferred from sequence or structural similarity /// 0001553 // luteinization // inferred from electronic annotation /// 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0006101 // citrate metabolic process // inferred from sequence or structural similarity /// 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006105 // succinate metabolic process // inferred from sequence or structural similarity /// 0006107 // oxaloacetate metabolic process // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006549 // isoleucine metabolic process // inferred from sequence or structural similarity /// 0006573 // valine metabolic process // inferred from sequence or structural similarity /// 0006600 // creatine metabolic process // inferred from sequence or structural similarity /// 0006631 // fatty acid metabolic process // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019218 // regulation of steroid metabolic process // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019530 // taurine metabolic process // inferred from sequence or structural similarity /// 0019915 // lipid storage // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030856 // regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032825 // positive regulation of natural killer cell differentiation // inferred from electronic annotation /// 0033026 // negative regulation of mast cell apoptotic process // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0038161 // prolactin signaling pathway // inferred from sequence or structural similarity /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045579 // positive regulation of B cell differentiation // inferred from electronic annotation /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from electronic annotation /// 0045621 // positive regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045647 // negative regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0046449 // creatinine metabolic process // inferred from sequence or structural similarity /// 0046543 // development of secondary female sexual characteristics // inferred from electronic annotation /// 0046544 // development of secondary male sexual characteristics // inferred from electronic annotation /// 0048541 // Peyer's patch development // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0060376 // positive regulation of mast cell differentiation // inferred from electronic annotation /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // traceable author statement /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0061180 // mammary gland epithelium development // inferred from electronic annotation /// 0070668 // positive regulation of mast cell proliferation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -54.77 94.71 -4.54 0.00 0.01 -4.46
201142_at 201142_at AA577698 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA577698 /FEA=EST /DB_XREF=gi:2355882 /DB_XREF=est:nn22h05.s1 /CLONE=IMAGE:1084665 /UG=Hs.151777 eukaryotic translation initiation factor 2, subunit 1 (alpha, 35kD ) /FL=gb:BC002513.1 gb:J02645.1 gb:NM_004094.1 AA577698 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa EIF2S1 1965 NM_004094 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0043558 // regulation of translational initiation in response to stress // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005844 // polysome // traceable author statement /// 0005850 // eukaryotic translation initiation factor 2 complex // inferred from electronic annotation /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 173.22 231.29 4.54 0.00 0.01 -4.46
210734_x_at 210734_x_at M64240 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M64240.1 /DEF=Human helix-loop-helix zipper protein (max) mRNA, complete cds. /FEA=mRNA /GEN=max; max /PROD=helix-loop-helix zipper protein; helix-loop-helix zipper protein /DB_XREF=gi:187390 /UG=Hs.42712 MAX protein /FL=gb:BC004516.1 gb:M64240.1 M64240 MYC associated factor X MAX 4149 NM_001271068 /// NM_001271069 /// NM_002382 /// NM_145112 /// NM_145113 /// NM_145114 /// NM_145116 /// NM_197957 /// NR_073137 /// NR_073138 /// XR_429315 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0071339 // MLL1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -55.70 101.67 -4.53 0.00 0.01 -4.46
217958_at 217958_at NM_016146 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016146.1 /DEF=Homo sapiens PTD009 protein (PTD009), mRNA. /FEA=mRNA /GEN=PTD009 /PROD=PTD009 protein /DB_XREF=gi:7706666 /UG=Hs.279901 PTD009 protein /FL=gb:AF151862.1 gb:AF078862.1 gb:AF161520.1 gb:NM_016146.1 NM_016146 microRNA 3656 /// trafficking protein particle complex 4 MIR3656 /// TRAPPC4 51399 /// 100500840 NM_016146 /// NR_037429 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from sequence or structural similarity /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0030008 // TRAPP complex // inferred from electronic annotation /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 77.40 292.15 4.53 0.00 0.01 -4.46
208415_x_at 208415_x_at NM_005537 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005537.1 /DEF=Homo sapiens inhibitor of growth 1 family, member 1 (ING1), mRNA. /FEA=mRNA /GEN=ING1 /PROD=inhibitor of growth 1 family, member 1 /DB_XREF=gi:5031792 /UG=Hs.46700 inhibitor of growth 1 family, member 1 /FL=gb:AF001954.1 gb:NM_005537.1 NM_005537 inhibitor of growth family, member 1 ING1 3621 NM_001267728 /// NM_005537 /// NM_198217 /// NM_198218 /// NM_198219 0006606 // protein import into nucleus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010941 // regulation of cell death // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -64.03 91.39 -4.53 0.00 0.01 -4.46
208923_at 208923_at BC005097 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005097.1 /DEF=Homo sapiens, Similar to selective hybridizing clone, clone MGC:13167, mRNA, complete cds. /FEA=mRNA /PROD=Similar to selective hybridizing clone /DB_XREF=gi:13477256 /UG=Hs.77257 KIAA0068 protein /FL=gb:BC005097.1 BC005097 cytoplasmic FMR1 interacting protein 1 CYFIP1 23191 NM_001033028 /// NM_001287810 /// NM_014608 /// XM_005272543 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // inferred from mutant phenotype /// 0030032 // lamellipodium assembly // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031529 // ruffle organization // inferred from sequence or structural similarity /// 0048675 // axon extension // inferred from mutant phenotype /// 0050890 // cognition // inferred from mutant phenotype /// 2000601 // positive regulation of Arp2/3 complex-mediated actin nucleation // inferred from mutant phenotype 0001726 // ruffle // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0031209 // SCAR complex // inferred from mutant phenotype /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from mutant phenotype /// 0048365 // Rac GTPase binding // inferred from mutant phenotype /// 0048365 // Rac GTPase binding // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from sequence or structural similarity 67.70 538.67 4.52 0.00 0.01 -4.46
207121_s_at 207121_s_at NM_002748 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002748.1 /DEF=Homo sapiens mitogen-activated protein kinase 6 (MAPK6), mRNA. /FEA=mRNA /GEN=MAPK6 /PROD=mitogen-activated protein kinase 6 /DB_XREF=gi:4506090 /UG=Hs.271980 mitogen-activated protein kinase 6 /FL=gb:L77964.1 gb:NM_002748.1 NM_002748 mitogen-activated protein kinase 6 MAPK6 5597 NM_002748 /// XM_005254536 /// XM_005254537 /// XM_005254538 /// XM_005254539 0000165 // MAPK cascade // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004707 // MAP kinase activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -71.22 444.59 -4.52 0.00 0.01 -4.46
209884_s_at 209884_s_at AF047033 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF047033.1 /DEF=Homo sapiens sodium bicarbonate cotransporter 3 (SLC4A7) mRNA, complete cds. /FEA=mRNA /GEN=SLC4A7 /PROD=sodium bicarbonate cotransporter 3 /DB_XREF=gi:5051627 /UG=Hs.132904 solute carrier family 4, sodium bicarbonate cotransporter, member 7 /FL=gb:AF047033.1 AF047033 solute carrier family 4, sodium bicarbonate cotransporter, member 7 SLC4A7 9497 NM_001258379 /// NM_001258380 /// NM_003615 /// XM_005265598 /// XM_005265599 /// XM_005265600 /// XM_005265601 /// XM_006713421 /// XR_245166 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0015701 // bicarbonate transport // non-traceable author statement /// 0015701 // bicarbonate transport // traceable author statement /// 0021747 // cochlear nucleus development // inferred from electronic annotation /// 0035725 // sodium ion transmembrane transport // non-traceable author statement /// 0046666 // retinal cell programmed cell death // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060117 // auditory receptor cell development // inferred from electronic annotation /// 0061299 // retina vasculature morphogenesis in camera-type eye // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0032420 // stereocilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0008510 // sodium:bicarbonate symporter activity // non-traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 84.95 98.00 4.52 0.00 0.01 -4.46
218149_s_at 218149_s_at NM_017606 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017606.1 /DEF=Homo sapiens hypothetical protein DKFZp434K1210 (DKFZp434K1210), mRNA. /FEA=mRNA /GEN=DKFZp434K1210 /PROD=hypothetical protein DKFZp434K1210 /DB_XREF=gi:8922146 /UG=Hs.32352 hypothetical protein DKFZp434K1210 /FL=gb:NM_017606.1 NM_017606 zinc finger protein 395 ZNF395 55893 NM_018660 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred by curator 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -43.10 49.23 -4.52 0.00 0.01 -4.46
200995_at 200995_at AI741392 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI741392 /FEA=EST /DB_XREF=gi:5109680 /DB_XREF=est:wg27b08.x1 /CLONE=IMAGE:2366295 /UG=Hs.5151 RAN binding protein 7 /FL=gb:AF098799.1 gb:NM_006391.1 AI741392 importin 7 IPO7 10527 NM_006391 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005083 // small GTPase regulator activity // traceable author statement /// 0005215 // transporter activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation 57.92 172.51 4.51 0.00 0.01 -4.46
221478_at 221478_at AL132665 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL132665.1 /DEF=Homo sapiens mRNA; cDNA DKFZp566E034 (from clone DKFZp566E034); complete cds. /FEA=mRNA /DB_XREF=gi:6137021 /UG=Hs.132955 BCL2adenovirus E1B 19kD-interacting protein 3-like /FL=gb:AF060922.1 gb:AB004788.1 gb:AF067396.1 gb:NM_004331.1 gb:AL132665.1 AL132665 BCL2/adenovirus E1B 19kDa interacting protein 3-like BNIP3L 665 NM_004331 /// XM_005273617 0006915 // apoptotic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0035694 // mitochondrial protein catabolic process // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0051607 // defense response to virus // inferred from direct assay /// 0097345 // mitochondrial outer membrane permeabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0005521 // lamin binding // inferred from direct assay /// 0005521 // lamin binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay -95.55 309.27 -4.51 0.00 0.01 -4.46
202581_at 202581_at NM_005346 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005346.2 /DEF=Homo sapiens heat shock 70kD protein 1B (HSPA1B), mRNA. /FEA=mRNA /GEN=HSPA1B /PROD=heat shock 70kD protein 1B /DB_XREF=gi:5579470 /UG=Hs.274402 heat shock 70kD protein 1B /FL=gb:NM_005346.2 NM_005346 heat shock 70kDa protein 1A /// heat shock 70kDa protein 1B HSPA1A /// HSPA1B 3303 /// 3304 NM_005345 /// NM_005346 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006402 // mRNA catabolic process // inferred from direct assay /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009615 // response to virus // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010941 // regulation of cell death // inferred from mutant phenotype /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0034605 // cellular response to heat // inferred from direct assay /// 0042026 // protein refolding // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045648 // positive regulation of erythrocyte differentiation // inferred from mutant phenotype /// 0060548 // negative regulation of cell death // inferred from mutant phenotype /// 0070370 // cellular heat acclimation // inferred from mutant phenotype /// 0090084 // negative regulation of inclusion body assembly // inferred from direct assay /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // traceable author statement /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005814 // centriole // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016234 // inclusion body // inferred from direct assay /// 0016235 // aggresome // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001618 // virus receptor activity // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042623 // ATPase activity, coupled // inferred from direct assay /// 0044183 // protein binding involved in protein folding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement 54.33 57.66 4.51 0.00 0.01 -4.46
221637_s_at 221637_s_at BC001434 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001434.1 /DEF=Homo sapiens, clone MGC:2477, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:2477) /DB_XREF=gi:12655158 /UG=Hs.9061 hypothetical protein MGC2477 /FL=gb:BC001434.1 BC001434 chromosome 11 open reading frame 48 /// uncharacterized LOC102288414 C11orf48 /// LOC102288414 79081 /// 102288414 NM_001286086 /// NM_024099 /// NR_104414 45.40 80.42 4.51 0.00 0.01 -4.46
217957_at 217957_at NM_013242 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013242.1 /DEF=Homo sapiens similar to mouse Glt3 or D. malanogaster transcription factor IIB (AF093680), mRNA. /FEA=mRNA /GEN=AF093680 /PROD=similar to mouse Glt3 or D. malanogastertranscription factor IIB /DB_XREF=gi:8392874 /UG=Hs.279818 similar to mouse Glt3 or D. malanogaster transcription factor IIB /FL=gb:BC005152.1 gb:AF093680.1 gb:NM_013242.1 NM_013242 chromosome 16 open reading frame 80 C16orf80 29105 NM_013242 0007275 // multicellular organismal development // traceable author statement 0005929 // cilium // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay 102.60 343.95 4.51 0.00 0.01 -4.46
209007_s_at 209007_s_at AF267856 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF267856.1 /DEF=Homo sapiens HT033 mRNA, complete cds. /FEA=mRNA /PROD=HT033 /DB_XREF=gi:12006038 /UG=Hs.8084 hypothetical protein dJ465N24.2.1 /FL=gb:AF247168.1 gb:AF267856.1 AF267856 uncharacterized LOC101928189 /// arginine/serine-rich protein 1 LOC101928189 /// RSRP1 57035 /// 101928189 NM_020317 /// NM_207035 /// XR_241200 /// XR_241201 /// XR_241226 /// XR_248757 /// XR_250715 /// XR_425130 /// XR_426623 /// XR_426670 /// XR_431144 53.57 75.26 4.50 0.00 0.01 -4.46
201524_x_at 201524_x_at NM_003348 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003348.1 /DEF=Homo sapiens ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) (UBE2N), mRNA. /FEA=mRNA /GEN=UBE2N /PROD=ubiquitin-conjugating enzyme E2N (homologous toyeast UBC13) /DB_XREF=gi:4507792 /UG=Hs.75355 ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) /FL=gb:D83004.1 gb:BC000396.1 gb:BC003365.1 gb:NM_003348.1 NM_003348 ubiquitin-conjugating enzyme E2N UBE2N 7334 NM_003348 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0000729 // DNA double-strand break processing // inferred from mutant phenotype /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006282 // regulation of DNA repair // traceable author statement /// 0006301 // postreplication repair // inferred from mutant phenotype /// 0006464 // cellular protein modification process // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0016567 // protein ubiquitination // traceable author statement /// 0016574 // histone ubiquitination // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031058 // positive regulation of histone modification // inferred from mutant phenotype /// 0033182 // regulation of histone ubiquitination // inferred from mutant phenotype /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045739 // positive regulation of DNA repair // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051443 // positive regulation of ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0031372 // UBC13-MMS2 complex // inferred from direct assay /// 0035370 // UBC13-UEV1A complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 165.68 669.66 4.50 0.00 0.01 -4.46
208974_x_at 208974_x_at BC003572 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003572.1 /DEF=Homo sapiens, karyopherin (importin) beta 1, clone MGC:2156, mRNA, complete cds. /FEA=mRNA /PROD=karyopherin (importin) beta 1 /DB_XREF=gi:13097743 /UG=Hs.180446 karyopherin (importin) beta 1 /FL=gb:BC003572.1 gb:NM_002265.1 gb:L38951.1 BC003572 karyopherin (importin) beta 1 KPNB1 3837 NM_001276453 /// NM_002265 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006610 // ribosomal protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071782 // endoplasmic reticulum tubular network // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 286.07 627.56 4.50 0.00 0.01 -4.46
213507_s_at 213507_s_at BG249565 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG249565 /FEA=EST /DB_XREF=gi:12759381 /DB_XREF=est:602319636F1 /CLONE=IMAGE:4414881 /UG=Hs.180446 karyopherin (importin) beta 1 BG249565 karyopherin (importin) beta 1 KPNB1 3837 NM_001276453 /// NM_002265 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006610 // ribosomal protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071782 // endoplasmic reticulum tubular network // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 304.47 786.99 4.50 0.00 0.01 -4.46
220235_s_at 220235_s_at NM_018372 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018372.1 /DEF=Homo sapiens hypothetical protein FLJ11269 (FLJ11269), mRNA. /FEA=mRNA /GEN=FLJ11269 /PROD=hypothetical protein FLJ11269 /DB_XREF=gi:8922961 /UG=Hs.25245 hypothetical protein FLJ11269 /FL=gb:NM_018372.1 NM_018372 ligand dependent nuclear receptor interacting factor 1 LRIF1 55791 NM_001006945 /// NM_018372 /// XM_005271029 /// XM_006710763 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation 44.85 103.83 4.50 0.00 0.01 -4.46
202105_at 202105_at NM_001551 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001551.1 /DEF=Homo sapiens immunoglobulin (CD79A) binding protein 1 (IGBP1), mRNA. /FEA=mRNA /GEN=IGBP1 /PROD=immunoglobulin-binding protein 1 /DB_XREF=gi:4557662 /UG=Hs.3631 immunoglobulin (CD79A) binding protein 1 /FL=gb:BC004137.1 gb:NM_001551.1 NM_001551 immunoglobulin (CD79A) binding protein 1 IGBP1 3476 NM_001551 /// XR_430521 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007165 // signal transduction // non-traceable author statement /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0032873 // negative regulation of stress-activated MAPK cascade // inferred from mutant phenotype /// 0034612 // response to tumor necrosis factor // inferred from mutant phenotype /// 0035306 // positive regulation of dephosphorylation // inferred from electronic annotation /// 0035308 // negative regulation of protein dephosphorylation // inferred from electronic annotation /// 0042113 // B cell activation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060632 // regulation of microtubule-based movement // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // non-traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // inferred from direct assay /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation -73.50 194.22 -4.49 0.00 0.01 -4.46
205241_at 205241_at NM_005138 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005138.1 /DEF=Homo sapiens SCO (cytochrome oxidase deficient, yeast) homolog 2 (SCO2), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=SCO2 /PROD=SCO (cytochrome oxidase deficient, yeast)homolog 2 /DB_XREF=gi:4826991 /UG=Hs.278431 SCO (cytochrome oxidase deficient, yeast) homolog 2 /FL=gb:NM_005138.1 NM_005138 SCO2 cytochrome c oxidase assembly protein SCO2 9997 NM_001169109 /// NM_001169110 /// NM_001169111 /// NM_005138 0000002 // mitochondrial genome maintenance // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001654 // eye development // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003012 // muscle system process // inferred from electronic annotation /// 0006206 // pyrimidine nucleobase metabolic process // inferred from electronic annotation /// 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006213 // pyrimidine nucleoside metabolic process // inferred from electronic annotation /// 0006220 // pyrimidine nucleotide metabolic process // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008535 // respiratory chain complex IV assembly // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0043097 // pyrimidine nucleoside salvage // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046135 // pyrimidine nucleoside catabolic process // traceable author statement /// 0055070 // copper ion homeostasis // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from direct assay 0004645 // phosphorylase activity // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // traceable author statement /// 0005507 // copper ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0009032 // thymidine phosphorylase activity // inferred from electronic annotation /// 0009032 // thymidine phosphorylase activity // traceable author statement /// 0016154 // pyrimidine-nucleoside phosphorylase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 49.10 67.90 4.49 0.00 0.01 -4.46
203613_s_at 203613_s_at NM_002493 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002493.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 (17kD, B17) (NDUFB6), mRNA. /FEA=mRNA /GEN=NDUFB6 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 6 (17kD, B17) /DB_XREF=gi:4505364 /UG=Hs.109646 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 (17kD, B17) /FL=gb:AF035840.1 gb:NM_002493.1 gb:AF067167.1 NM_002493 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa NDUFB6 4712 NM_001199987 /// NM_002493 /// NM_182739 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 86.95 299.90 4.49 0.00 0.01 -4.46
36084_at 36084_at D38548 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. D38548:Human mRNA for KIAA0076 gene, complete cds /cds=(86,5182) /gb=D38548 /gi=559706 /ug=Hs.51039 /len=5253 D38548 cullin 7 CUL7 9820 NM_001168370 /// NM_014780 /// XM_005249503 /// XM_006715285 0000226 // microtubule cytoskeleton organization // inferred from mutant phenotype /// 0000281 // mitotic cytokinesis // inferred from mutant phenotype /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0001890 // placenta development // inferred from direct assay /// 0006508 // proteolysis // non-traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007030 // Golgi organization // inferred from sequence or structural similarity /// 0007088 // regulation of mitosis // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050775 // positive regulation of dendrite morphogenesis // inferred from genetic interaction /// 0050775 // positive regulation of dendrite morphogenesis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005680 // anaphase-promoting complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031467 // Cul7-RING ubiquitin ligase complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 1990393 // 3M complex // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 39.65 100.40 4.49 0.00 0.01 -4.46
209427_at 209427_at AF064238 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF064238.3 /DEF=Homo sapiens smoothelin large isoform L2 (SMTN) mRNA, complete cds. /FEA=mRNA /GEN=SMTN /PROD=smoothelin large isoform L2 /DB_XREF=gi:8119287 /UG=Hs.149098 smoothelin /FL=gb:AF064238.3 AF064238 smoothelin SMTN 6525 NM_001207017 /// NM_001207018 /// NM_006932 /// NM_134269 /// NM_134270 /// XM_006724298 /// XM_006724299 /// XM_006724300 /// XM_006724301 /// XM_006724302 /// XM_006724303 /// XM_006724304 /// XM_006724305 /// XM_006724306 /// XM_006724307 /// XR_430410 0006939 // smooth muscle contraction // traceable author statement /// 0007517 // muscle organ development // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0008307 // structural constituent of muscle // traceable author statement 53.43 110.79 4.49 0.00 0.01 -4.46
218373_at 218373_at NM_022476 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022476.1 /DEF=Homo sapiens hypothetical protein FLJ13258 similar to fused toes (FLJ13258), mRNA. /FEA=mRNA /GEN=FLJ13258 /PROD=hypothetical protein FLJ13258 similar to fusedtoes /DB_XREF=gi:11968026 /UG=Hs.288929 hypothetical protein FLJ13258 similar to fused toes /FL=gb:NM_022476.1 NM_022476 AKT interacting protein AKTIP 64400 NM_001012398 /// NM_022476 /// XM_005256094 /// XM_005256095 /// XM_005256096 /// XM_005256097 /// XM_005256098 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007032 // endosome organization // inferred from mutant phenotype /// 0007040 // lysosome organization // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0045022 // early endosome to late endosome transport // inferred from mutant phenotype 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030897 // HOPS complex // inferred from direct assay /// 0070695 // FHF complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // non-traceable author statement 40.73 64.74 4.49 0.00 0.01 -4.46
208908_s_at 208908_s_at AF327443 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF327443.1 /DEF=Homo sapiens calpastatin mRNA, complete cds. /FEA=mRNA /PROD=calpastatin /DB_XREF=gi:12056961 /UG=Hs.279607 calpastatin /FL=gb:AF327443.1 gb:U26724.2 AF327443 calpastatin CAST 831 NM_001042440 /// NM_001042441 /// NM_001042442 /// NM_001042443 /// NM_001042444 /// NM_001042445 /// NM_001042446 /// NM_001190442 /// NM_001284212 /// NM_001284213 /// NM_001750 /// NM_173060 /// NM_173061 /// NM_173062 /// NM_173063 /// NR_033798 /// NR_104285 /// XM_006714696 /// XM_006714697 /// XM_006714698 /// XM_006714699 /// XM_006714700 /// XM_006714701 /// XM_006714702 /// XM_006714703 /// XM_006714704 /// XM_006714705 /// XM_006714706 /// XM_006714707 /// XM_006714708 /// XM_006714709 /// XM_006714710 /// XM_006714711 /// XM_006714712 /// XM_006714713 /// XM_006714714 /// XM_006714715 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // traceable author statement /// 2000675 // negative regulation of type B pancreatic cell apoptotic process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0004866 // endopeptidase inhibitor activity // traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // non-traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -72.00 185.82 -4.48 0.00 0.01 -4.46
219206_x_at 219206_x_at NM_016056 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016056.1 /DEF=Homo sapiens CGI-119 protein (LOC51643), mRNA. /FEA=mRNA /GEN=LOC51643 /PROD=CGI-119 protein /DB_XREF=gi:7706334 /UG=Hs.283670 CGI-119 protein /FL=gb:AF182041.1 gb:AF151877.1 gb:AF113127.1 gb:AF161526.1 gb:NM_016056.1 NM_016056 transmembrane BAX inhibitor motif containing 4 TMBIM4 51643 NM_001282606 /// NM_001282609 /// NM_001282610 /// NM_016056 0006915 // apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0050848 // regulation of calcium-mediated signaling // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 99.97 225.84 4.48 0.00 0.01 -4.46
202080_s_at 202080_s_at NM_014965 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014965.1 /DEF=Homo sapiens KIAA1042 protein (KIAA1042), mRNA. /FEA=mRNA /GEN=KIAA1042 /PROD=KIAA1042 protein /DB_XREF=gi:7662457 /UG=Hs.6705 KIAA1042 protein /FL=gb:AB028965.1 gb:NM_014965.1 NM_014965 trafficking protein, kinesin binding 1 TRAK1 22906 NM_001042646 /// NM_001265608 /// NM_001265609 /// NM_001265610 /// NM_014965 /// XM_005264956 /// XM_005264957 /// XM_005264958 /// XM_005264959 /// XM_005264960 /// XM_005264962 /// XM_005264963 /// XM_005264964 /// XM_006713028 /// XM_006713029 /// XM_006713030 /// XM_006713031 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006493 // protein O-linked glycosylation // inferred from sequence or structural similarity /// 0006605 // protein targeting // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // inferred from direct assay 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0050811 // GABA receptor binding // inferred from electronic annotation 75.78 172.34 4.48 0.00 0.01 -4.46
203497_at 203497_at NM_004774 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004774.1 /DEF=Homo sapiens PPAR binding protein (PPARBP), mRNA. /FEA=mRNA /GEN=PPARBP /PROD=thyroid hormone receptor interactor 2 /DB_XREF=gi:4759265 /UG=Hs.15589 PPAR binding protein /FL=gb:AF055994.1 gb:NM_004774.1 gb:AF283812.1 NM_004774 mediator complex subunit 1 MED1 5469 NM_004774 /// XM_005257465 /// XM_006721957 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // inferred from sequence or structural similarity /// 0002154 // thyroid hormone mediated signaling pathway // inferred from mutant phenotype /// 0003222 // ventricular trabecula myocardium morphogenesis // inferred from electronic annotation /// 0003406 // retinal pigment epithelium development // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006356 // regulation of transcription from RNA polymerase I promoter // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006590 // thyroid hormone generation // inferred from electronic annotation /// 0006702 // androgen biosynthetic process // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010839 // negative regulation of keratinocyte proliferation // inferred from mutant phenotype /// 0030216 // keratinocyte differentiation // inferred from mutant phenotype /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0030518 // intracellular steroid hormone receptor signaling pathway // inferred from direct assay /// 0030521 // androgen receptor signaling pathway // inferred from direct assay /// 0031100 // organ regeneration // inferred from electronic annotation /// 0033148 // positive regulation of intracellular estrogen receptor signaling pathway // inferred from electronic annotation /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033601 // positive regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035357 // peroxisome proliferator activated receptor signaling pathway // inferred from electronic annotation /// 0035729 // cellular response to hepatocyte growth factor stimulus // inferred from electronic annotation /// 0035855 // megakaryocyte development // inferred from sequence or structural similarity /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045444 // fat cell differentiation // inferred from direct assay /// 0045618 // positive regulation of keratinocyte differentiation // inferred from mutant phenotype /// 0045665 // negative regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048821 // erythrocyte development // inferred from sequence or structural similarity /// 0048822 // enucleate erythrocyte development // inferred from electronic annotation /// 0051726 // regulation of cell cycle // non-traceable author statement /// 0060335 // positive regulation of interferon-gamma-mediated signaling pathway // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060745 // mammary gland branching involved in pregnancy // inferred from electronic annotation /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // inferred from electronic annotation /// 0070318 // positive regulation of G0 to G1 transition // inferred from electronic annotation /// 0070371 // ERK1 and ERK2 cascade // inferred from direct assay /// 0070562 // regulation of vitamin D receptor signaling pathway // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from direct assay /// 0071383 // cellular response to steroid hormone stimulus // inferred from direct assay /// 0097067 // cellular response to thyroid hormone stimulus // inferred from direct assay /// 2000273 // positive regulation of receptor activity // inferred from mutant phenotype /// 2000347 // positive regulation of hepatocyte proliferation // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from mutant phenotype 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016592 // mediator complex // inferred from direct assay /// 0016592 // mediator complex // inferred from mutant phenotype /// 0032993 // protein-DNA complex // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from electronic annotation /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from sequence or structural similarity /// 0001047 // core promoter binding // inferred from direct assay /// 0001104 // RNA polymerase II transcription cofactor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from mutant phenotype /// 0003712 // transcription cofactor activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0004872 // receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016922 // ligand-dependent nuclear receptor binding // inferred from direct assay /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from mutant phenotype /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // non-traceable author statement /// 0030375 // thyroid hormone receptor coactivator activity // inferred from mutant phenotype /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from physical interaction /// 0036033 // mediator complex binding // inferred from direct assay /// 0042809 // vitamin D receptor binding // inferred from physical interaction /// 0042809 // vitamin D receptor binding // non-traceable author statement /// 0042809 // vitamin D receptor binding // traceable author statement /// 0042974 // retinoic acid receptor binding // inferred from physical interaction /// 0042975 // peroxisome proliferator activated receptor binding // inferred from physical interaction /// 0046966 // thyroid hormone receptor binding // inferred from direct assay /// 0046966 // thyroid hormone receptor binding // inferred from physical interaction /// 0050693 // LBD domain binding // inferred from physical interaction 49.92 84.81 4.48 0.00 0.01 -4.46
203721_s_at 203721_s_at NM_016001 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016001.1 /DEF=Homo sapiens CGI-48 protein (LOC51096), mRNA. /FEA=mRNA /GEN=LOC51096 /PROD=CGI-48 protein /DB_XREF=gi:7705764 /UG=Hs.6153 CGI-48 protein /FL=gb:AF151806.1 gb:NM_016001.1 NM_016001 UTP18 small subunit (SSU) processome component homolog (yeast) UTP18 51096 NM_016001 /// XM_006721930 0006364 // rRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 68.67 181.59 4.48 0.00 0.01 -4.46
202506_at 202506_at NM_006751 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006751.1 /DEF=Homo sapiens sperm specific antigen 2 (SSFA2), mRNA. /FEA=mRNA /GEN=SSFA2 /PROD=sperm specific antigen 2 /DB_XREF=gi:5803178 /UG=Hs.82767 sperm specific antigen 2 /FL=gb:M61199.1 gb:NM_006751.1 NM_006751 sperm specific antigen 2 SSFA2 6744 NM_001130445 /// NM_001287503 /// NM_001287504 /// NM_001287505 /// NM_006751 /// NR_109843 /// XM_005246812 /// XM_005246813 /// XR_241319 /// XR_241320 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation 83.00 298.85 4.48 0.00 0.01 -4.46
202967_at 202967_at NM_001512 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001512.1 /DEF=Homo sapiens glutathione S-transferase A4 (GSTA4), mRNA. /FEA=mRNA /GEN=GSTA4 /PROD=glutathione S-transferase A4 /DB_XREF=gi:4504172 /UG=Hs.169907 glutathione S-transferase A4 /FL=gb:AF020918.1 gb:AF025887.1 gb:NM_001512.1 gb:AF125271.1 gb:AF125272.1 gb:AF125273.1 NM_001512 glutathione S-transferase alpha 4 GSTA4 2941 NM_001512 /// XM_005249035 0006749 // glutathione metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 1901687 // glutathione derivative biosynthetic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004364 // glutathione transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction 82.08 214.44 4.48 0.00 0.01 -4.46
221514_at 221514_at BC001149 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001149.1 /DEF=Homo sapiens, Similar to KIAA0266 gene product, clone MGC:1291, mRNA, complete cds. /FEA=mRNA /PROD=Similar to KIAA0266 gene product /DB_XREF=gi:12654624 /UG=Hs.271926 serologically defined colon cancer antigen 16 /FL=gb:BC001149.1 BC001149 UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) UTP14A 10813 NM_001166221 /// NM_006649 /// XM_005262363 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0032040 // small-subunit processome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 37.43 68.16 4.48 0.00 0.01 -4.46
221753_at 221753_at AI651213 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI651213 /FEA=EST /DB_XREF=gi:4735192 /DB_XREF=est:wa98a11.x1 /CLONE=IMAGE:2304188 /UG=Hs.60377 KIAA1298 protein AI651213 slingshot protein phosphatase 1 SSH1 54434 NM_001161330 /// NM_001161331 /// NM_018984 /// XM_005268984 /// XM_005268985 /// XM_005268986 /// XM_006719466 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // inferred from mutant phenotype /// 0008064 // regulation of actin polymerization or depolymerization // not recorded /// 0010591 // regulation of lamellipodium assembly // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0032268 // regulation of cellular protein metabolic process // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0071318 // cellular response to ATP // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from mutant phenotype /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation -333.95 375.75 -4.47 0.00 0.01 -4.46
202214_s_at 202214_s_at NM_003588 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003588.1 /DEF=Homo sapiens cullin 4B (CUL4B), mRNA. /FEA=mRNA /GEN=CUL4B /PROD=cullin 4B /DB_XREF=gi:13270466 /UG=Hs.155976 cullin 4B /FL=gb:NM_003588.1 gb:AB014595.1 NM_003588 cullin 4B CUL4B 8450 NM_001079872 /// NM_003588 /// XM_005262481 /// XM_006724784 /// XM_006724785 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // non-traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035518 // histone H2A monoubiquitination // inferred from direct assay /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from direct assay /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031465 // Cul4B-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003684 // damaged DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 105.88 239.61 4.47 0.00 0.01 -4.46
202067_s_at 202067_s_at AI861942 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI861942 /FEA=EST /DB_XREF=gi:5526049 /DB_XREF=est:td18b10.x1 /CLONE=IMAGE:2075995 /UG=Hs.213289 low density lipoprotein receptor (familial hypercholesterolemia) /FL=gb:NM_000527.2 AI861942 low density lipoprotein receptor LDLR 3949 NM_000527 /// NM_001195798 /// NM_001195799 /// NM_001195800 /// NM_001195802 /// NM_001195803 /// XR_244074 0001523 // retinoid metabolic process // traceable author statement /// 0006629 // lipid metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006897 // endocytosis // traceable author statement /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from sequence or structural similarity /// 0010899 // regulation of phosphatidylcholine catabolic process // inferred from sequence or structural similarity /// 0015914 // phospholipid transport // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030299 // intestinal cholesterol absorption // inferred from mutant phenotype /// 0030301 // cholesterol transport // inferred from mutant phenotype /// 0034383 // low-density lipoprotein particle clearance // inferred from mutant phenotype /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0042159 // lipoprotein catabolic process // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0070508 // cholesterol import // inferred from sequence or structural similarity 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0010008 // endosome membrane // traceable author statement /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0005041 // low-density lipoprotein receptor activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030169 // low-density lipoprotein particle binding // inferred from electronic annotation /// 0030229 // very-low-density lipoprotein particle receptor activity // inferred from direct assay 54.02 32.36 4.47 0.00 0.01 -4.46
212435_at 212435_at AA205593 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA205593 /FEA=EST /DB_XREF=gi:1803601 /DB_XREF=est:zq68c06.s1 /CLONE=IMAGE:646762 /UG=Hs.26837 Homo sapiens mRNA; cDNA DKFZp586K1123 (from clone DKFZp586K1123) AA205593 tripartite motif containing 33 TRIM33 51592 NM_015906 /// NM_033020 /// XM_005270936 /// XM_005270937 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030514 // negative regulation of BMP signaling pathway // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from physical interaction /// 0070412 // R-SMAD binding // inferred from physical interaction 49.53 47.04 4.47 0.00 0.01 -4.46
203225_s_at 203225_s_at NM_018339 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018339.1 /DEF=Homo sapiens hypothetical protein FLJ11149 (FLJ11149), mRNA. /FEA=mRNA /GEN=FLJ11149 /PROD=hypothetical protein FLJ11149 /DB_XREF=gi:8922898 /UG=Hs.37558 hypothetical protein FLJ11149 /FL=gb:NM_018339.1 NM_018339 riboflavin kinase RFK 55312 NM_018339 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006771 // riboflavin metabolic process // traceable author statement /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0009231 // riboflavin biosynthetic process // non-traceable author statement /// 0009398 // FMN biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0033864 // positive regulation of NAD(P)H oxidase activity // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008531 // riboflavin kinase activity // non-traceable author statement /// 0008531 // riboflavin kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 63.03 184.41 4.47 0.00 0.01 -4.46
202725_at 202725_at NM_000937 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000937.1 /DEF=Homo sapiens polymerase (RNA) II (DNA directed) polypeptide A (220kD) (POLR2A), mRNA. /FEA=mRNA /GEN=POLR2A /PROD=polymerase (RNA) II (DNA directed) polypeptide A(220kD) /DB_XREF=gi:4505938 /UG=Hs.171880 polymerase (RNA) II (DNA directed) polypeptide A (220kD) /FL=gb:NM_000937.1 NM_000937 polymerase (RNA) II (DNA directed) polypeptide A, 220kDa POLR2A 5430 NM_000937 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001172 // transcription, RNA-templated // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // non-traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0001055 // RNA polymerase II activity // not recorded /// 0003677 // DNA binding // non-traceable author statement /// 0003899 // DNA-directed RNA polymerase activity // non-traceable author statement /// 0003968 // RNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 51.47 137.64 4.47 0.00 0.01 -4.46
209158_s_at 209158_s_at BC004361 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004361.1 /DEF=Homo sapiens, pleckstrin homology, Sec7 and coiledcoil domains 2 (cytohesin-2), clone MGC:642, mRNA, complete cds. /FEA=mRNA /PROD=pleckstrin homology, Sec7 and coiledcoildomains 2 (cytohesin-2) /DB_XREF=gi:13279334 /UG=Hs.303091 pleckstrin homology, Sec7 and coiledcoil domains 2 (cytohesin-2) /FL=gb:NM_017457.2 gb:NM_004228.3 gb:BC004361.1 gb:U70728.1 BC004361 cytohesin 2 CYTH2 9266 NM_004228 /// NM_017457 /// XM_006723472 /// XM_006723473 0006897 // endocytosis // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007229 // integrin-mediated signaling pathway // traceable author statement /// 0016192 // vesicle-mediated transport // not recorded /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030155 // regulation of cell adhesion // not recorded /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // not recorded /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from sequence or structural similarity /// 0043087 // regulation of GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // traceable author statement 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // not recorded /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005178 // integrin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0070679 // inositol 1,4,5 trisphosphate binding // inferred from sequence or structural similarity -56.02 104.61 -4.47 0.00 0.01 -4.46
201121_s_at 201121_s_at NM_006667 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006667.2 /DEF=Homo sapiens progesterone binding protein (HPR6.6), mRNA. /FEA=mRNA /GEN=HPR6.6 /PROD=progesterone binding protein /DB_XREF=gi:6857798 /UG=Hs.90061 progesterone binding protein /FL=gb:NM_006667.2 NM_006667 progesterone receptor membrane component 1 PGRMC1 10857 NM_001282621 /// NM_006667 0007411 // axon guidance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 85.05 397.00 4.47 0.00 0.01 -4.46
205398_s_at 205398_s_at NM_005902 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005902.1 /DEF=Homo sapiens MAD (mothers against decapentaplegic, Drosophila) homolog 3 (MADH3), mRNA. /FEA=mRNA /GEN=MADH3 /PROD=MAD (mothers against decapentaplegic,Drosophila) homolog 3 /DB_XREF=gi:5174512 /UG=Hs.211578 MAD (mothers against decapentaplegic, Drosophila) homolog 3 /FL=gb:U76622.1 gb:U68019.1 gb:NM_005902.1 NM_005902 SMAD family member 3 SMAD3 4088 NM_001145102 /// NM_001145103 /// NM_001145104 /// NM_005902 /// XM_006720506 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0001947 // heart looping // inferred from electronic annotation /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002520 // immune system development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006810 // transport // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0006955 // immune response // inferred from mutant phenotype /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007183 // SMAD protein complex assembly // inferred from direct assay /// 0007369 // gastrulation // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010694 // positive regulation of alkaline phosphatase activity // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from mutant phenotype /// 0016202 // regulation of striated muscle tissue development // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0019049 // evasion or tolerance of host defenses by virus // inferred from direct assay /// 0023019 // signal transduction involved in regulation of gene expression // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0031053 // primary miRNA processing // traceable author statement /// 0032332 // positive regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032731 // positive regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032909 // regulation of transforming growth factor beta2 production // inferred from mutant phenotype /// 0032916 // positive regulation of transforming growth factor beta3 production // inferred from electronic annotation /// 0032924 // activin receptor signaling pathway // inferred from mutant phenotype /// 0033689 // negative regulation of osteoblast proliferation // inferred from electronic annotation /// 0035413 // positive regulation of catenin import into nucleus // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0038092 // nodal signaling pathway // inferred from mutant phenotype /// 0042060 // wound healing // traceable author statement /// 0042110 // T cell activation // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from mutant phenotype /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045216 // cell-cell junction organization // inferred from mutant phenotype /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045930 // negative regulation of mitotic cell cycle // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048340 // paraxial mesoderm morphogenesis // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0051098 // regulation of binding // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from electronic annotation /// 0060039 // pericardium development // inferred from electronic annotation /// 0060290 // transdifferentiation // inferred from electronic annotation /// 0061045 // negative regulation of wound healing // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 0097191 // extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 0097296 // activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway // inferred from electronic annotation /// 1901313 // positive regulation of gene expression involved in extracellular matrix organization // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005637 // nuclear inner membrane // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043235 // receptor complex // inferred from mutant phenotype /// 0071141 // SMAD protein complex // inferred from direct assay /// 0071144 // SMAD2-SMAD3 protein complex // inferred from direct assay 0000987 // core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000988 // protein binding transcription factor activity // inferred from direct assay /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005160 // transforming growth factor beta receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019902 // phosphatase binding // inferred from physical interaction /// 0030618 // transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity // inferred from direct assay /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from physical interaction /// 0070412 // R-SMAD binding // inferred from physical interaction -123.68 223.71 -4.47 0.00 0.01 -4.46
201546_at 201546_at NM_004238 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004238.1 /DEF=Homo sapiens thyroid hormone receptor interactor 12 (TRIP12), mRNA. /FEA=mRNA /GEN=TRIP12 /PROD=thyroid hormone receptor interactor 12 /DB_XREF=gi:10863902 /UG=Hs.138617 thyroid hormone receptor interactor 12 /FL=gb:NM_004238.1 gb:D28476.1 NM_004238 thyroid hormone receptor interactor 12 TRIP12 9320 NM_001284214 /// NM_001284215 /// NM_001284216 /// NM_004238 /// XM_005246954 /// XM_005246955 /// XM_005246956 /// XM_005246957 /// XM_005246958 /// XM_005246960 /// XM_005246961 /// XM_005246962 /// XM_005246963 /// XM_006712852 /// XM_006712853 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // non-traceable author statement /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 1901315 // negative regulation of histone H2A K63-linked ubiquitination // inferred from mutant phenotype /// 2000780 // negative regulation of double-strand break repair // inferred from mutant phenotype 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein transferase activity // not recorded /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // inferred from direct assay -86.07 396.81 -4.47 0.00 0.01 -4.46
218145_at 218145_at NM_021158 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021158.1 /DEF=Homo sapiens protein kinase domains containing protein similar to phosphoprotein C8FW (LOC57761), mRNA. /FEA=mRNA /GEN=LOC57761 /PROD=protein kinase domains containing proteinsimilar to phosphoprotein C8FW /DB_XREF=gi:11056039 /UG=Hs.26802 protein kinase domains containing protein similar to phosphoprotein C8FW /FL=gb:NM_021158.1 NM_021158 tribbles pseudokinase 3 TRIB3 57761 NM_021158 /// XM_005260773 /// XM_005260774 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010827 // regulation of glucose transport // inferred from sequence or structural similarity /// 0032092 // positive regulation of protein binding // inferred from sequence or structural similarity /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043405 // regulation of MAP kinase activity // inferred from direct assay /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0051443 // positive regulation of ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from direct assay /// 2001141 // regulation of RNA biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0031965 // nuclear membrane // inferred from direct assay 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0031625 // ubiquitin protein ligase binding // inferred from sequence or structural similarity /// 0055106 // ubiquitin-protein transferase regulator activity // inferred from sequence or structural similarity -280.20 360.30 -4.47 0.00 0.01 -4.46
213292_s_at 213292_s_at AA908770 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA908770 /FEA=EST /DB_XREF=gi:3048175 /DB_XREF=est:ol06a11.s1 /CLONE=IMAGE:1522652 /UG=Hs.283881 KIAA0713 protein AA908770 sorting nexin 13 SNX13 23161 NM_015132 /// XM_005249672 /// XM_005249673 /// XM_005249674 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from direct assay 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from direct assay -37.40 108.30 -4.47 0.00 0.01 -4.46
207643_s_at 207643_s_at NM_001065 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001065.1 /DEF=Homo sapiens tumor necrosis factor receptor superfamily, member 1A (TNFRSF1A), mRNA. /FEA=mRNA /GEN=TNFRSF1A /PROD=tumor necrosis factor receptor 1 (55kD) /DB_XREF=gi:4507574 /UG=Hs.159 tumor necrosis factor receptor superfamily, member 1A /FL=gb:NM_001065.1 NM_001065 tumor necrosis factor receptor superfamily, member 1A TNFRSF1A 7132 NM_001065 0001666 // response to hypoxia // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006952 // defense response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // traceable author statement /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009812 // flavonoid metabolic process // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016101 // diterpenoid metabolic process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0033013 // tetrapyrrole metabolic process // inferred from electronic annotation /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043279 // response to alkaloid // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from sequence or structural similarity /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0000139 // Golgi membrane // inferred from direct assay /// 0005576 // extracellular region // non-traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0002020 // protease binding // inferred from electronic annotation /// 0005031 // tumor necrosis factor-activated receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043120 // tumor necrosis factor binding // inferred from electronic annotation -117.02 372.01 -4.47 0.00 0.01 -4.46
217979_at 217979_at NM_014399 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014399.1 /DEF=Homo sapiens tetraspan NET-6 protein (NET-6), mRNA. /FEA=mRNA /GEN=NET-6 /PROD=tetraspan NET-6 protein /DB_XREF=gi:7657372 /UG=Hs.284243 tetraspan NET-6 protein /FL=gb:AF120265.1 gb:AF100759.1 gb:NM_014399.1 NM_014399 tetraspanin 13 TSPAN13 27075 NM_014399 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 161.28 400.31 4.46 0.00 0.01 -4.46
212201_at 212201_at AW274877 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW274877 /FEA=EST /DB_XREF=gi:6661907 /DB_XREF=est:xm62a09.x1 /CLONE=IMAGE:2688760 /UG=Hs.100729 KIAA0692 protein AW274877 ankyrin repeat and LEM domain containing 2 ANKLE2 23141 NM_015114 /// XM_005266159 /// XM_005266160 /// XM_005266161 /// XM_006719735 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007084 // mitotic nuclear envelope reassembly // inferred from mutant phenotype /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0042326 // negative regulation of phosphorylation // inferred from direct assay /// 0050790 // regulation of catalytic activity // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0051721 // protein phosphatase 2A binding // inferred from direct assay -48.28 102.54 -4.46 0.00 0.01 -4.46
204491_at 204491_at R40917 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:R40917 /FEA=EST /DB_XREF=gi:823119 /DB_XREF=est:yf75d09.s1 /CLONE=IMAGE:28220 /UG=Hs.172081 phosphodiesterase 4D, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E3) /FL=gb:L20969.1 gb:U02882.1 gb:NM_006203.1 R40917 phosphodiesterase 4D, cAMP-specific PDE4D 5144 NM_001104631 /// NM_001165899 /// NM_001197218 /// NM_001197219 /// NM_001197220 /// NM_001197221 /// NM_001197222 /// NM_001197223 /// NM_006203 /// XM_005248537 /// XM_005248538 /// XM_005248540 /// XM_005248541 0002027 // regulation of heart rate // inferred from sequence or structural similarity /// 0006198 // cAMP catabolic process // inferred from direct assay /// 0006198 // cAMP catabolic process // inferred from electronic annotation /// 0006198 // cAMP catabolic process // inferred from genetic interaction /// 0006198 // cAMP catabolic process // inferred from mutant phenotype /// 0006939 // smooth muscle contraction // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement /// 0010469 // regulation of receptor activity // inferred from sequence or structural similarity /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from sequence or structural similarity /// 0019933 // cAMP-mediated signaling // non-traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // inferred from mutant phenotype /// 0032743 // positive regulation of interleukin-2 production // inferred from mutant phenotype /// 0032754 // positive regulation of interleukin-5 production // inferred from mutant phenotype /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // inferred from mutant phenotype /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0061028 // establishment of endothelial barrier // inferred from sequence or structural similarity /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071320 // cellular response to cAMP // inferred from direct assay /// 0071872 // cellular response to epinephrine stimulus // inferred from direct assay /// 0071872 // cellular response to epinephrine stimulus // inferred from electronic annotation /// 0071875 // adrenergic receptor signaling pathway // inferred from sequence or structural similarity /// 0086004 // regulation of cardiac muscle cell contraction // inferred from sequence or structural similarity /// 0086024 // adrenergic receptor signaling pathway involved in positive regulation of heart rate // inferred by curator /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred by curator /// 1901898 // negative regulation of relaxation of cardiac muscle // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // non-traceable author statement /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from genetic interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from sequence or structural similarity /// 0030552 // cAMP binding // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031698 // beta-2 adrenergic receptor binding // inferred from sequence or structural similarity /// 0044325 // ion channel binding // inferred from physical interaction /// 0044325 // ion channel binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from physical interaction /// 0097110 // scaffold protein binding // inferred from physical interaction -40.68 90.19 -4.46 0.00 0.01 -4.46
200822_x_at 200822_x_at NM_000365 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000365.1 /DEF=Homo sapiens triosephosphate isomerase 1 (TPI1), mRNA. /FEA=mRNA /GEN=TPI1 /PROD=triosephosphate isomerase 1 /DB_XREF=gi:4507644 /UG=Hs.83848 triosephosphate isomerase 1 /FL=gb:BC004230.1 gb:NM_000365.1 NM_000365 triosephosphate isomerase 1 TPI1 7167 NM_000365 /// NM_001159287 /// NM_001258026 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0019682 // glyceraldehyde-3-phosphate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004807 // triose-phosphate isomerase activity // not recorded /// 0004807 // triose-phosphate isomerase activity // non-traceable author statement /// 0004807 // triose-phosphate isomerase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation -388.70 1292.08 -4.46 0.00 0.01 -4.46
203614_at 203614_at NM_021645 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021645.1 /DEF=Homo sapiens KIAA0266 gene product (KIAA0266), mRNA. /FEA=mRNA /GEN=KIAA0266 /PROD=KIAA0266 gene product /DB_XREF=gi:11063982 /UG=Hs.127376 KIAA0266 gene product /FL=gb:NM_021645.1 gb:D87455.1 NM_021645 ALG11, alpha-1,2-mannosyltransferase /// UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast) ALG11 /// UTP14C 9724 /// 440138 NM_001004127 /// NM_021645 /// NR_036571 0006364 // rRNA processing // inferred from electronic annotation /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0097502 // mannosylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0032040 // small-subunit processome // inferred from electronic annotation 0004377 // GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 46.32 138.06 4.45 0.00 0.01 -4.46
212896_at 212896_at D29641 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D29641.2 /DEF=Homo sapiens mRNA for KIAA0052 protein, partial cds. /FEA=mRNA /GEN=KIAA0052 /PROD=KIAA0052 protein /DB_XREF=gi:6633994 /UG=Hs.278608 KIAA0052 protein D29641 superkiller viralicidic activity 2-like 2 (S. cerevisiae) SKIV2L2 23517 NM_015360 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000460 // maturation of 5.8S rRNA // inferred from mutant phenotype /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0000178 // exosome (RNase complex) // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 48.52 144.76 4.45 0.00 0.01 -4.46
222143_s_at 222143_s_at AY007098 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AY007098.1 /DEF=Homo sapiens clone TCCCIA00183 mRNA sequence. /FEA=mRNA /DB_XREF=gi:9955989 /UG=Hs.27556 hypothetical protein FLJ22405 AY007098 myotubularin related protein 14 MTMR14 64419 NM_001077525 /// NM_001077526 /// NM_022485 /// XM_005265400 /// XR_245152 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0001726 // ruffle // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004438 // phosphatidylinositol-3-phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation -53.30 153.00 -4.45 0.00 0.01 -4.46
203579_s_at 203579_s_at AI660619 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI660619 /FEA=EST /DB_XREF=gi:4764202 /DB_XREF=est:wf21h04.x1 /CLONE=IMAGE:2351287 /UG=Hs.10315 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 /FL=gb:D87432.1 gb:NM_003983.1 AI660619 solute carrier family 7 (amino acid transporter light chain, y+L system), member 6 SLC7A6 9057 NM_001076785 /// NM_003983 /// XR_243433 /// XR_429735 /// XR_429736 /// XR_429737 /// XR_429738 /// XR_429739 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 42.35 76.20 4.45 0.00 0.01 -4.46
221487_s_at 221487_s_at AF157510 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF157510.1 /DEF=Homo sapiens beta endosulfine mRNA, complete cds. /FEA=mRNA /PROD=beta endosulfine /DB_XREF=gi:8886010 /UG=Hs.111680 endosulfine alpha /FL=gb:AF067170.1 gb:AF157510.1 AF157510 endosulfine alpha ENSA 2029 NM_004436 /// NM_207042 /// NM_207043 /// NM_207044 /// NM_207045 /// NM_207046 /// NM_207047 /// NM_207168 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000278 // mitotic cell cycle // traceable author statement /// 0006810 // transport // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from sequence or structural similarity /// 0007584 // response to nutrient // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // inferred from sequence or structural similarity /// 0050796 // regulation of insulin secretion // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0008200 // ion channel inhibitor activity // traceable author statement /// 0008601 // protein phosphatase type 2A regulator activity // inferred from sequence or structural similarity /// 0019212 // phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0019870 // potassium channel inhibitor activity // inferred from direct assay /// 0051721 // protein phosphatase 2A binding // inferred from sequence or structural similarity 40.62 32.66 4.45 0.00 0.01 -4.46
212023_s_at 212023_s_at AU147044 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU147044 /FEA=EST /DB_XREF=gi:11008565 /DB_XREF=est:AU147044 /CLONE=HEMBB1002259 /UG=Hs.80976 antigen identified by monoclonal antibody Ki-67 AU147044 marker of proliferation Ki-67 MKI67 4288 NM_001145966 /// NM_002417 /// XM_006717864 0006259 // DNA metabolic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0034605 // cellular response to heat // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 51.08 67.29 4.45 0.00 0.01 -4.46
202150_s_at 202150_s_at U64317 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U64317.1 /DEF=Human Crk-associated substrate related protein Cas-L mRNA, complete cds. /FEA=mRNA /PROD=Crk-associated substrate related protein Cas-L /DB_XREF=gi:1490786 /UG=Hs.80261 enhancer of filamentation 1 (cas-like docking; Crk-associated substrate related) /FL=gb:L43821.1 gb:U64317.1 gb:NM_006403.1 U64317 neural precursor cell expressed, developmentally down-regulated 9 NEDD9 4739 NM_001142393 /// NM_001271033 /// NM_006403 /// NM_182966 /// NR_073131 0007010 // cytoskeleton organization // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005819 // spindle // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -43.77 148.09 -4.45 0.00 0.01 -4.46
207098_s_at 207098_s_at NM_017927 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017927.1 /DEF=Homo sapiens hypothetical protein FLJ20693 (FLJ20693), mRNA. /FEA=mRNA /GEN=FLJ20693 /PROD=hypothetical protein FLJ20693 /DB_XREF=gi:8923620 /UG=Hs.197877 hypothetical protein FLJ20693 /FL=gb:NM_017927.1 NM_017927 mitofusin 1 MFN1 55669 NM_017927 /// NM_033540 /// XM_005247595 /// XM_005247596 0006184 // GTP catabolic process // inferred from electronic annotation /// 0008053 // mitochondrial fusion // inferred from direct assay /// 0008053 // mitochondrial fusion // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 44.03 63.81 4.44 0.00 0.01 -4.46
205193_at 205193_at NM_012323 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012323.1 /DEF=Homo sapiens v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein F (MAFF), mRNA. /FEA=mRNA /GEN=MAFF /PROD=v-maf musculoaponeurotic fibrosarcoma (avian)oncogene family, protein F /DB_XREF=gi:6912489 /UG=Hs.51305 v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein F /FL=gb:AB025247.1 gb:NM_012323.1 NM_012323 v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F MAFF 23764 NM_001161572 /// NM_001161573 /// NM_001161574 /// NM_012323 /// NM_152878 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0007567 // parturition // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 82.35 188.15 4.44 0.00 0.01 -4.47
202268_s_at 202268_s_at NM_003905 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003905.1 /DEF=Homo sapiens amyloid beta precursor protein-binding protein 1, 59kD (APPBP1), mRNA. /FEA=mRNA /GEN=APPBP1 /PROD=Amyloid beta precursor protein-binding protein1 /DB_XREF=gi:4502168 /UG=Hs.61828 amyloid beta precursor protein-binding protein 1, 59kD /FL=gb:AL136798.1 gb:BC000480.1 gb:U50939.1 gb:NM_003905.1 NM_003905 NEDD8 activating enzyme E1 subunit 1 NAE1 8883 NM_001018159 /// NM_001018160 /// NM_001286500 /// NM_003905 /// XM_005256215 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0033314 // mitotic DNA replication checkpoint // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from direct assay /// 0043523 // regulation of neuron apoptotic process // inferred from direct assay /// 0045116 // protein neddylation // inferred from direct assay /// 0045116 // protein neddylation // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from direct assay 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019781 // NEDD8 activating enzyme activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction 128.45 393.05 4.44 0.00 0.01 -4.47
214039_s_at 214039_s_at T15777 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:T15777 /FEA=EST /DB_XREF=gi:517939 /DB_XREF=est:IB1875 /UG=Hs.296398 Homo sapiens mRNA; cDNA DKFZp586E1124 (from clone DKFZp586E1124); complete cds T15777 lysosomal protein transmembrane 4 beta LAPTM4B 55353 NM_018407 0006810 // transport // inferred from electronic annotation 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 139.12 808.21 4.44 0.00 0.01 -4.47
214143_x_at 214143_x_at AI560573 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI560573 /FEA=EST /DB_XREF=gi:4510914 /DB_XREF=est:tq49c03.x1 /CLONE=IMAGE:2212132 /UG=Hs.184582 ribosomal protein L24 AI560573 ribosomal protein L24 RPL24 6152 NM_000986 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0015808 // L-alanine transport // inferred from electronic annotation /// 0015816 // glycine transport // inferred from electronic annotation /// 0015824 // proline transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0035524 // proline transmembrane transport // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005280 // hydrogen:amino acid symporter activity // inferred from electronic annotation /// 0015180 // L-alanine transmembrane transporter activity // inferred from electronic annotation /// 0015187 // glycine transmembrane transporter activity // inferred from electronic annotation /// 0015187 // glycine transmembrane transporter activity // inferred from mutant phenotype /// 0015193 // L-proline transmembrane transporter activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -244.33 2581.31 -4.43 0.00 0.01 -4.47
210541_s_at 210541_s_at AF230394 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF230394.1 /DEF=Homo sapiens tripartite motif protein TRIM27 beta mRNA, complete cds. /FEA=mRNA /PROD=tripartite motif protein TRIM27 beta /DB_XREF=gi:12275875 /UG=Hs.142653 ret finger protein /FL=gb:AF230394.1 AF230394 tripartite motif containing 27 TRIM27 5987 NM_006510 /// NM_030950 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002820 // negative regulation of adaptive immune response // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0032720 // negative regulation of tumor necrosis factor production // inferred from mutant phenotype /// 0032897 // negative regulation of viral transcription // inferred from direct assay /// 0034314 // Arp2/3 complex-mediated actin nucleation // inferred from direct assay /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay /// 0045087 // innate immune response // inferred from direct assay /// 0045814 // negative regulation of gene expression, epigenetic // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0070206 // protein trimerization // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from mutant phenotype /// 0072643 // interferon-gamma secretion // inferred from mutant phenotype /// 0090281 // negative regulation of calcium ion import // inferred from mutant phenotype /// 1900041 // negative regulation of interleukin-2 secretion // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016605 // PML body // inferred from electronic annotation /// 0030904 // retromer complex // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0003676 // nucleic acid binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // traceable author statement 88.50 120.17 4.43 0.00 0.01 -4.47
200594_x_at 200594_x_at NM_004501 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004501.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRPU), mRNA. /FEA=mRNA /GEN=HNRPU /PROD=heterogeneous nuclear ribonucleoprotein U(scaffold attachment factor A) /DB_XREF=gi:4758545 /UG=Hs.103804 heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) /FL=gb:BC003367.1 gb:BC003621.1 gb:NM_004501.1 NM_004501 heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) HNRNPU 3192 NM_004501 /// NM_031844 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 274.35 887.33 4.43 0.00 0.01 -4.47
218306_s_at 218306_s_at NM_003922 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003922.1 /DEF=Homo sapiens hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 (HERC1), mRNA. /FEA=mRNA /GEN=HERC1 /PROD=guanine nucleotide exchange factor p532 /DB_XREF=gi:4557025 /UG=Hs.76127 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 /FL=gb:U50078.1 gb:NM_003922.1 NM_003922 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 HERC1 8925 NM_003922 /// XM_005254742 /// XM_005254743 /// XM_005254746 /// XM_005254747 /// XM_006720728 /// XR_243129 0006810 // transport // inferred from electronic annotation /// 0010507 // negative regulation of autophagy // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -51.58 121.19 -4.43 0.00 0.01 -4.47
210582_s_at 210582_s_at AL117466 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL117466.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586K0922 (from clone DKFZp586K0922); complete cds. /FEA=mRNA /GEN=DKFZp586K0922 /PROD=hypothetical protein /DB_XREF=gi:5911930 /UG=Hs.278027 LIM domain kinase 2 /FL=gb:AL117466.1 gb:NM_016733.1 AL117466 LIM domain kinase 2 LIMK2 3985 NM_001031801 /// NM_005569 /// NM_016733 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016310 // phosphorylation // traceable author statement /// 0042325 // regulation of phosphorylation // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005801 // cis-Golgi network // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -50.52 217.99 -4.43 0.00 0.01 -4.47
213506_at 213506_at BE965369 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE965369 /FEA=EST /DB_XREF=gi:11769659 /DB_XREF=est:601659282R1 /CLONE=IMAGE:3895653 /UG=Hs.168102 Human proteinase activated receptor-2 mRNA, 3UTR BE965369 coagulation factor II (thrombin) receptor-like 1 F2RL1 2150 NM_005242 0002286 // T cell activation involved in immune response // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0002690 // positive regulation of leukocyte chemotaxis // inferred from direct assay /// 0002741 // positive regulation of cytokine secretion involved in immune response // inferred from direct assay /// 0003104 // positive regulation of glomerular filtration // inferred from sequence or structural similarity /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007596 // blood coagulation // inferred from electronic annotation /// 0010804 // negative regulation of tumor necrosis factor-mediated signaling pathway // inferred from direct assay /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from sequence or structural similarity /// 0030193 // regulation of blood coagulation // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0030836 // positive regulation of actin filament depolymerization // inferred from direct assay /// 0031274 // positive regulation of pseudopodium assembly // inferred from sequence or structural similarity /// 0032930 // positive regulation of superoxide anion generation // inferred from direct assay /// 0034137 // positive regulation of toll-like receptor 2 signaling pathway // inferred from mutant phenotype /// 0034140 // negative regulation of toll-like receptor 3 signaling pathway // inferred from mutant phenotype /// 0034141 // positive regulation of toll-like receptor 3 signaling pathway // inferred from mutant phenotype /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from direct assay /// 0035025 // positive regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035025 // positive regulation of Rho protein signal transduction // inferred from sequence or structural similarity /// 0035926 // chemokine (C-C motif) ligand 2 secretion // inferred from direct assay /// 0042119 // neutrophil activation // inferred from direct assay /// 0043122 // regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043311 // positive regulation of eosinophil degranulation // inferred from direct assay /// 0045087 // innate immune response // inferred from electronic annotation /// 0045909 // positive regulation of vasodilation // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046328 // regulation of JNK cascade // inferred from direct assay /// 0046329 // negative regulation of JNK cascade // inferred from direct assay /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0050702 // interleukin-1 beta secretion // inferred from direct assay /// 0050900 // leukocyte migration // inferred from direct assay /// 0050921 // positive regulation of chemotaxis // inferred from sequence or structural similarity /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0051607 // defense response to virus // inferred from direct assay /// 0060100 // positive regulation of phagocytosis, engulfment // inferred from direct assay /// 0061028 // establishment of endothelial barrier // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070493 // thrombin receptor signaling pathway // inferred from electronic annotation /// 0070661 // leukocyte proliferation // inferred from sequence or structural similarity /// 0070963 // positive regulation of neutrophil mediated killing of gram-negative bacterium // inferred from direct assay /// 0072608 // interleukin-10 secretion // inferred from direct assay /// 0072643 // interferon-gamma secretion // inferred from sequence or structural similarity /// 0090195 // chemokine secretion // inferred from direct assay /// 0090198 // negative regulation of chemokine secretion // inferred from direct assay /// 0097029 // mature dendritic cell differentiation // inferred from direct assay /// 0097029 // mature dendritic cell differentiation // inferred from sequence or structural similarity /// 1900135 // positive regulation of renin secretion into blood stream // inferred from sequence or structural similarity /// 2000484 // positive regulation of interleukin-8 secretion // inferred from direct assay /// 2000778 // positive regulation of interleukin-6 secretion // inferred from direct assay 0005794 // Golgi apparatus // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031143 // pseudopodium // inferred from sequence or structural similarity 0001965 // G-protein alpha-subunit binding // inferred from sequence or structural similarity /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0015057 // thrombin receptor activity // inferred from electronic annotation /// 0031681 // G-protein beta-subunit binding // inferred from sequence or structural similarity -354.45 748.35 -4.42 0.00 0.01 -4.47
221522_at 221522_at AL136784 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136784.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434L0718 (from clone DKFZp434L0718); complete cds. /FEA=mRNA /GEN=DKFZp434L0718 /PROD=hypothetical protein /DB_XREF=gi:12053080 /UG=Hs.59236 Homo sapiens mRNA; cDNA DKFZp434L0718 (from clone DKFZp434L0718); complete cds /FL=gb:AL136784.1 AL136784 ankyrin repeat domain 27 (VPS9 domain) ANKRD27 84079 NM_032139 /// XM_005259310 /// XM_006723412 /// XM_006723413 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 57.63 109.36 4.42 0.00 0.01 -4.47
218500_at 218500_at NM_016647 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016647.1 /DEF=Homo sapiens mesenchymal stem cell protein DSCD75 (LOC51337), mRNA. /FEA=mRNA /GEN=LOC51337 /PROD=mesenchymal stem cell protein DSCD75 /DB_XREF=gi:7706199 /UG=Hs.25237 mesenchymal stem cell protein DSCD75 /FL=gb:BC001311.1 gb:AF242773.1 gb:NM_016647.1 NM_016647 thioesterase superfamily member 6 THEM6 51337 NM_016647 /// XM_005250955 0005576 // extracellular region // inferred from electronic annotation 43.40 39.38 4.42 0.00 0.01 -4.47
202160_at 202160_at NM_004380 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004380.1 /DEF=Homo sapiens CREB binding protein (Rubinstein-Taybi syndrome) (CREBBP), mRNA. /FEA=mRNA /GEN=CREBBP /PROD=CREB binding protein /DB_XREF=gi:4758055 /UG=Hs.23598 CREB binding protein (Rubinstein-Taybi syndrome) /FL=gb:U47741.1 gb:NM_004380.1 NM_004380 CREB binding protein CREBBP 1387 NM_001079846 /// NM_004380 /// XM_005255124 /// XM_005255125 /// XM_006720848 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001666 // response to hypoxia // traceable author statement /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010560 // positive regulation of glycoprotein biosynthetic process // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from direct assay /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030718 // germ-line stem cell maintenance // inferred from electronic annotation /// 0031324 // negative regulation of cellular metabolic process // inferred from electronic annotation /// 0031325 // positive regulation of cellular metabolic process // inferred from electronic annotation /// 0032025 // response to cobalt ion // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042592 // homeostatic process // non-traceable author statement /// 0042733 // embryonic digit morphogenesis // traceable author statement /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0045862 // positive regulation of proteolysis // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from electronic annotation /// 0050714 // positive regulation of protein secretion // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0060177 // regulation of angiotensin metabolic process // inferred from electronic annotation /// 0060298 // positive regulation of sarcomere organization // inferred from electronic annotation /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0065004 // protein-DNA complex assembly // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0070542 // response to fatty acid // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // traceable author statement 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016604 // nuclear body // inferred from direct assay /// 0032993 // protein-DNA complex // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from electronic annotation /// 0000987 // core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0001102 // RNA polymerase II activating transcription factor binding // traceable author statement /// 0001105 // RNA polymerase II transcription coactivator activity // traceable author statement /// 0001159 // core promoter proximal region DNA binding // inferred from electronic annotation /// 0001191 // RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0002039 // p53 binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from physical interaction /// 0003823 // antigen binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004468 // lysine N-acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0033613 // activating transcription factor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0042975 // peroxisome proliferator activated receptor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043426 // MRF binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // inferred from electronic annotation -54.98 157.44 -4.42 0.00 0.01 -4.47
35671_at 35671_at U02619 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U02619:Human TFIIIC Box B-binding subunit mRNA, complete cds /cds=(60,6389) /gb=U02619 /gi=414932 /ug=Hs.331 /len=6996 U02619 general transcription factor IIIC, polypeptide 1, alpha 220kDa GTF3C1 2975 NM_001286242 /// NM_001520 /// XM_006721042 0006351 // transcription, DNA-templated // inferred by curator /// 0006383 // transcription from RNA polymerase III promoter // inferred by curator /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0009303 // rRNA transcription // traceable author statement /// 0009304 // tRNA transcription // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0042791 // 5S class rRNA transcription from RNA polymerase III type 1 promoter // inferred by curator /// 0042797 // tRNA transcription from RNA polymerase III promoter // inferred by curator 0000127 // transcription factor TFIIIC complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction 72.47 164.86 4.41 0.00 0.01 -4.47
218049_s_at 218049_s_at NM_014078 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014078.1 /DEF=Homo sapiens L13 protein (L13), mRNA. /FEA=mRNA /GEN=L13 /PROD=L13 protein /DB_XREF=gi:7662495 /UG=Hs.43946 L13 protein /FL=gb:AF112214.1 gb:NM_014078.1 NM_014078 mitochondrial ribosomal protein L13 MRPL13 28998 NM_014078 /// XM_006716547 0006412 // translation // non-traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from direct assay /// 0005762 // mitochondrial large ribosomal subunit // inferred from direct assay /// 0005762 // mitochondrial large ribosomal subunit // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 49.53 108.91 4.41 0.00 0.01 -4.47
221788_at 221788_at AV727934 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV727934 /FEA=EST /DB_XREF=gi:10837355 /DB_XREF=est:AV727934 /CLONE=HTCBWH07 /UG=Hs.237323 N-acetylglucosamine-phosphate mutase AV727934 phosphoglucomutase 3 PGM3 5238 NM_001199917 /// NM_001199918 /// NM_001199919 /// NM_015599 /// XM_005248728 /// XM_006715504 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006041 // glucosamine metabolic process // non-traceable author statement /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // not recorded /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // inferred from electronic annotation /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // traceable author statement /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019255 // glucose 1-phosphate metabolic process // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004610 // phosphoacetylglucosamine mutase activity // inferred from direct assay /// 0004614 // phosphoglucomutase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 41.15 43.20 4.41 0.00 0.01 -4.47
201544_x_at 201544_x_at BF675004 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF675004 /FEA=EST /DB_XREF=gi:11948899 /DB_XREF=est:602138088F1 /CLONE=IMAGE:4274564 /UG=Hs.117176 poly(A)-binding protein, nuclear 1 /FL=gb:NM_004643.1 BF675004 BCL2-like 2 /// BCL2L2-PABPN1 readthrough /// poly(A) binding protein, nuclear 1 BCL2L2 /// BCL2L2-PABPN1 /// PABPN1 599 /// 8106 /// 100529063 NM_001199839 /// NM_001199864 /// NM_004050 /// NM_004643 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0007283 // spermatogenesis // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0010467 // gene expression // traceable author statement /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // traceable author statement /// 0019054 // modulation by virus of host process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0046778 // modification by virus of host mRNA processing // traceable author statement /// 0060011 // Sertoli cell proliferation // inferred from electronic annotation /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // not recorded /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0051400 // BH domain binding // inferred from electronic annotation 196.70 563.48 4.41 0.00 0.01 -4.47
211758_x_at 211758_x_at BC005968 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005968.1 /DEF=Homo sapiens, ATP binding protein associated with cell differentiation, clone MGC:14620, mRNA, complete cds. /FEA=mRNA /PROD=ATP binding protein associated with celldifferentiation /DB_XREF=gi:13543638 /FL=gb:BC005968.1 BC005968 thioredoxin domain containing 9 TXNDC9 10190 NM_005783 0045454 // cell redox homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 130.80 556.75 4.41 0.00 0.01 -4.47
212607_at 212607_at N32526 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N32526 /FEA=EST /DB_XREF=gi:1152925 /DB_XREF=est:yy11f04.s1 /CLONE=IMAGE:270943 /UG=Hs.300642 serologically defined colon cancer antigen 8 N32526 v-akt murine thymoma viral oncogene homolog 3 AKT3 10000 NM_001206729 /// NM_005465 /// NM_181690 /// XM_005272994 /// XM_005272995 /// XM_005272997 /// XM_006711725 /// XM_006711726 /// XM_006724959 /// XM_006724960 /// XM_006724961 /// XM_006724962 /// XM_006724963 0000002 // mitochondrial genome maintenance // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -98.18 335.19 -4.41 0.00 0.01 -4.47
201384_s_at 201384_s_at NM_005899 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005899.1 /DEF=Homo sapiens membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125) (M17S2), mRNA. /FEA=mRNA /GEN=M17S2 /PROD=membrane component, chromosome 17, surfacemarker 2 (ovarian carcinoma antigen CA125) /DB_XREF=gi:5174504 /UG=Hs.277721 membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125) /FL=gb:D30756.1 gb:NM_005899.1 NM_005899 neighbor of BRCA1 gene 1 NBR1 4077 NM_001291571 /// NM_001291572 /// NM_005899 /// NM_031858 /// NM_031862 /// XM_006721903 0016236 // macroautophagy // inferred from direct assay /// 0030500 // regulation of bone mineralization // inferred from sequence or structural similarity /// 0032872 // regulation of stress-activated MAPK cascade // inferred from sequence or structural similarity /// 0045668 // negative regulation of osteoblast differentiation // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // inferred from direct assay 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005776 // autophagic vacuole // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from sequence or structural similarity -74.65 211.07 -4.41 0.00 0.01 -4.47
32836_at 32836_at U56417 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U56417:Human lysophosphatidic acid acyltransferase-alpha mRNA, complete cds /cds=(318,1169) /gb=U56417 /gi=2155237 /ug=Hs.209119 /len=2232 U56417 1-acylglycerol-3-phosphate O-acyltransferase 1 AGPAT1 10554 NM_006411 /// NM_032741 /// XM_005248805 /// XM_005248806 /// XM_005272761 /// XM_005272762 /// XM_005274829 /// XM_005274830 /// XM_005275073 /// XM_005275074 /// XM_005275203 /// XM_005275204 /// XM_005275337 /// XM_005275338 /// XM_005275504 /// XM_005275505 0001819 // positive regulation of cytokine production // inferred from mutant phenotype /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred by curator /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006654 // phosphatidic acid biosynthetic process // inferred from genetic interaction /// 0006654 // phosphatidic acid biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0016024 // CDP-diacylglycerol biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0031325 // positive regulation of cellular metabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from genetic interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 90.38 313.59 4.41 0.00 0.01 -4.47
40149_at 40149_at AL049924 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL049924:Homo sapiens mRNA; cDNA DKFZp547G1110 (from clone DKFZp547G1110) /cds=(0,1623) /gb=AL049924 /gi=4884170 /ug=Hs.15744 /len=2381 AL049924 SH2B adaptor protein 1 SH2B1 25970 NM_001145795 /// NM_001145796 /// NM_001145797 /// NM_001145812 /// NM_015503 /// XM_005255240 /// XM_006721031 /// XM_006721032 /// XM_006721033 /// XM_006721034 /// XM_006721035 /// XM_006721036 /// XM_006721037 0006928 // cellular component movement // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 2000278 // regulation of DNA biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation 38.20 56.80 4.40 0.00 0.01 -4.47
202060_at 202060_at NM_014633 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014633.1 /DEF=Homo sapiens KIAA0155 gene product (KIAA0155), mRNA. /FEA=mRNA /GEN=KIAA0155 /PROD=KIAA0155 gene product /DB_XREF=gi:7661949 /UG=Hs.173288 KIAA0155 gene product /FL=gb:NM_014633.1 gb:D63875.1 NM_014633 CTR9, Paf1/RNA polymerase II complex component CTR9 9646 NM_014633 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001711 // endodermal cell fate commitment // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from sequence or structural similarity /// 0010390 // histone monoubiquitination // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from direct assay /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from direct assay /// 0033523 // histone H2B ubiquitination // inferred from direct assay /// 0045638 // negative regulation of myeloid cell differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from mutant phenotype /// 0070102 // interleukin-6-mediated signaling pathway // inferred from sequence or structural similarity /// 0071222 // cellular response to lipopolysaccharide // inferred from sequence or structural similarity /// 0080182 // histone H3-K4 trimethylation // inferred from mutant phenotype /// 2001162 // positive regulation of histone H3-K79 methylation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035327 // transcriptionally active chromatin // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0042169 // SH2 domain binding // inferred from electronic annotation 71.68 178.86 4.40 0.00 0.01 -4.47
219184_x_at 219184_x_at NM_013337 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013337.1 /DEF=Homo sapiens translocase of inner mitochondrial membrane 22 (yeast) homolog (TIM22), mRNA. /FEA=mRNA /GEN=TIM22 /PROD=translocase of inner mitochondrial membrane 22(yeast) homolog /DB_XREF=gi:7019552 /UG=Hs.87595 translocase of inner mitochondrial membrane 22 (yeast) homolog /FL=gb:BC002324.1 gb:AF155330.1 gb:NM_013337.1 NM_013337 translocase of inner mitochondrial membrane 22 homolog (yeast) TIMM22 29928 NM_013337 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045039 // protein import into mitochondrial inner membrane // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0015266 // protein channel activity // traceable author statement 60.03 119.06 4.40 0.00 0.01 -4.47
217527_s_at 217527_s_at AI478300 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI478300 /FEA=EST /DB_XREF=gi:4371526 /DB_XREF=est:tm39e01.x1 /CLONE=IMAGE:2160504 /UG=Hs.192789 ESTs, Weakly similar to ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE CONTAMINATION WARNING ENTRY H.sapiens AI478300 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein NFATC2IP 84901 NM_032815 0001816 // cytokine production // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 75.70 101.62 4.40 0.00 0.01 -4.47
221806_s_at 221806_s_at BF590997 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF590997 /FEA=EST /DB_XREF=gi:11683321 /DB_XREF=est:7h47c07.x1 /CLONE=IMAGE:3319116 /UG=Hs.7187 hypothetical protein FLJ10707 BF590997 SET domain containing 5 SETD5 55209 NM_001080517 /// NM_001292043 /// NM_018187 /// XM_005265299 /// XM_005265301 /// XM_005265303 /// XM_005265307 /// XM_006713235 /// XM_006713236 /// XM_006713237 /// XM_006713238 /// XM_006713239 /// XM_006713240 /// XM_006713241 /// XM_006713242 /// XM_006713243 /// XM_006713244 /// XM_006713245 0005515 // protein binding // inferred from electronic annotation -145.05 391.88 -4.40 0.00 0.01 -4.47
206025_s_at 206025_s_at AW188198 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW188198 /FEA=EST /DB_XREF=gi:6462634 /DB_XREF=est:xj93f03.x1 /CLONE=IMAGE:2664797 /UG=Hs.29352 tumor necrosis factor, alpha-induced protein 6 /FL=gb:NM_007115.1 AW188198 tumor necrosis factor, alpha-induced protein 6 TNFAIP6 7130 NM_007115 0006954 // inflammatory response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement 0005540 // hyaluronic acid binding // inferred from electronic annotation -40.52 41.31 -4.40 0.00 0.01 -4.47
203725_at 203725_at NM_001924 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001924.2 /DEF=Homo sapiens growth arrest and DNA-damage-inducible, alpha (GADD45A), mRNA. /FEA=mRNA /GEN=GADD45A /PROD=growth arrest and DNA-damage-inducible, alpha /DB_XREF=gi:9790904 /UG=Hs.80409 growth arrest and DNA-damage-inducible, alpha /FL=gb:M60974.1 gb:NM_001924.2 NM_001924 growth arrest and DNA-damage-inducible, alpha GADD45A 1647 NM_001199741 /// NM_001199742 /// NM_001924 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0000185 // activation of MAPKKK activity // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007098 // centrosome cycle // inferred from electronic annotation /// 0042770 // signal transduction in response to DNA damage // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071479 // cellular response to ionizing radiation // inferred from mutant phenotype /// 1900745 // positive regulation of p38MAPK cascade // inferred from direct assay /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0001047 // core promoter binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -160.83 304.34 -4.40 0.00 0.01 -4.47
212644_s_at 212644_s_at AI671747 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI671747 /FEA=EST /DB_XREF=gi:4851478 /DB_XREF=est:wa05e06.x1 /CLONE=IMAGE:2297218 /UG=Hs.81360 Homo sapiens cDNA: FLJ21927 fis, clone HEP04178, highly similar to HSU90909 Human clone 23722 mRNA sequence AI671747 mitogen-activated protein kinase 1 interacting protein 1-like MAPK1IP1L 93487 NM_144578 90.85 156.55 4.40 0.00 0.01 -4.47
212132_at 212132_at AL117499 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL117499.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434D1335 (from clone DKFZp434D1335); partial cds. /FEA=mRNA /GEN=DKFZp434D1335 /PROD=hypothetical protein /DB_XREF=gi:5912003 /UG=Hs.8258 DKFZP434D1335 protein AL117499 LSM14A, SCD6 homolog A (S. cerevisiae) LSM14A 26065 NM_001114093 /// NM_015578 /// XM_005258719 /// XM_005258720 /// XM_005258721 /// XM_005276948 /// XM_005276949 /// XM_005276950 0006417 // regulation of translation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0033962 // cytoplasmic mRNA processing body assembly // inferred from direct assay /// 0033962 // cytoplasmic mRNA processing body assembly // inferred from mutant phenotype /// 0039529 // RIG-I signaling pathway // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060340 // positive regulation of type I interferon-mediated signaling pathway // inferred from electronic annotation 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -50.80 194.20 -4.40 0.00 0.01 -4.47
202106_at 202106_at NM_005895 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005895.1 /DEF=Homo sapiens golgi autoantigen, golgin subfamily a, 3 (GOLGA3), mRNA. /FEA=mRNA /GEN=GOLGA3 /PROD=golgi autoantigen, golgin subfamily a, 3 /DB_XREF=gi:5174440 /UG=Hs.4953 golgi autoantigen, golgin subfamily a, 3 /FL=gb:D63997.1 gb:NM_005895.1 NM_005895 golgin A3 GOLGA3 2802 NM_001172557 /// NM_005895 /// XM_005266162 /// XM_005266164 /// XM_005266165 /// XM_005266167 /// XM_006719736 /// XM_006719737 /// XM_006719738 /// XM_006719739 /// XM_006719740 0006891 // intra-Golgi vesicle-mediated transport // non-traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from direct assay /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0090498 // extrinsic component of Golgi membrane // inferred from direct assay 0005215 // transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 63.40 133.62 4.40 0.00 0.01 -4.47
220526_s_at 220526_s_at NM_017971 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017971.1 /DEF=Homo sapiens hypothetical protein FLJ10024 (FLJ10024), mRNA. /FEA=mRNA /GEN=FLJ10024 /PROD=hypothetical protein FLJ10024 /DB_XREF=gi:8922189 /UG=Hs.182698 hypothetical protein FLJ10024 /FL=gb:NM_017971.1 NM_017971 mitochondrial ribosomal protein L20 MRPL20 55052 NM_017971 /// XM_005244767 /// XM_005244768 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 85.43 187.21 4.40 0.00 0.01 -4.47
212861_at 212861_at BF690150 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF690150 /FEA=EST /DB_XREF=gi:11975558 /DB_XREF=est:602186478T1 /CLONE=IMAGE:4298635 /UG=Hs.19210 ESTs BF690150 major facilitator superfamily domain containing 5 MFSD5 84975 NM_001170790 /// NM_032889 /// XM_005269197 /// XM_005269198 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 39.88 125.46 4.40 0.00 0.01 -4.47
203411_s_at 203411_s_at NM_005572 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005572.1 /DEF=Homo sapiens lamin AC (LMNA), mRNA. /FEA=mRNA /GEN=LMNA /PROD=lamin AC /DB_XREF=gi:5031874 /UG=Hs.77886 lamin AC /FL=gb:BC000511.1 gb:BC003162.1 gb:M13451.1 gb:NM_005572.1 NM_005572 lamin A/C LMNA 4000 NM_001257374 /// NM_001282624 /// NM_001282625 /// NM_001282626 /// NM_005572 /// NM_170707 /// NM_170708 0000278 // mitotic cell cycle // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0006997 // nucleus organization // inferred from electronic annotation /// 0006998 // nuclear envelope organization // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0007517 // muscle organ development // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from sequence or structural similarity /// 0030951 // establishment or maintenance of microtubule cytoskeleton polarity // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0034504 // protein localization to nucleus // inferred from sequence or structural similarity /// 0035105 // sterol regulatory element binding protein import into nucleus // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from electronic annotation /// 0090343 // positive regulation of cell aging // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005638 // lamin filament // inferred from electronic annotation /// 0005638 // lamin filament // traceable author statement /// 0005652 // nuclear lamina // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005882 // intermediate filament // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 250.20 396.45 4.40 0.00 0.01 -4.47
201437_s_at 201437_s_at NM_001968 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001968.1 /DEF=Homo sapiens eukaryotic translation initiation factor 4E (EIF4E), mRNA. /FEA=mRNA /GEN=EIF4E /PROD=eukaryotic translation initiation factor 4E /DB_XREF=gi:4503534 /UG=Hs.79306 eukaryotic translation initiation factor 4E /FL=gb:M15353.1 gb:NM_001968.1 NM_001968 eukaryotic translation initiation factor 4E EIF4E 1977 NM_001130678 /// NM_001130679 /// NM_001968 /// XM_006714126 /// XM_006714127 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005845 // mRNA cap binding complex // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016442 // RISC complex // inferred from direct assay /// 0033391 // chromatoid body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000339 // RNA cap binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0031370 // eukaryotic initiation factor 4G binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 55.75 106.72 4.40 0.00 0.01 -4.47
209240_at 209240_at AF070560 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF070560.1 /DEF=Homo sapiens clone 24689 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3387927 /UG=Hs.100293 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) /FL=gb:AF223393.1 AF070560 O-linked N-acetylglucosamine (GlcNAc) transferase OGT 8473 NM_003605 /// NM_181672 /// NM_181673 /// XM_005262308 /// XM_006724714 0006110 // regulation of glycolytic process // inferred from direct assay /// 0006325 // chromatin organization // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0006493 // protein O-linked glycosylation // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007584 // response to nutrient // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030854 // positive regulation of granulocyte differentiation // inferred from mutant phenotype /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032868 // response to insulin // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0035020 // regulation of Rac protein signal transduction // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043981 // histone H4-K5 acetylation // inferred from direct assay /// 0043982 // histone H4-K8 acetylation // inferred from direct assay /// 0043984 // histone H4-K16 acetylation // inferred from direct assay /// 0045862 // positive regulation of proteolysis // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046626 // regulation of insulin receptor signaling pathway // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from direct assay /// 0061087 // positive regulation of histone H3-K27 methylation // inferred from mutant phenotype /// 0071300 // cellular response to retinoic acid // inferred from mutant phenotype /// 0080182 // histone H3-K4 trimethylation // inferred from mutant phenotype /// 0090526 // regulation of gluconeogenesis involved in cellular glucose homeostasis // inferred from sequence or structural similarity 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070688 // MLL5-L complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // traceable author statement /// 0016262 // protein N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043995 // histone acetyltransferase activity (H4-K5 specific) // inferred from direct assay /// 0043996 // histone acetyltransferase activity (H4-K8 specific) // inferred from direct assay /// 0046972 // histone acetyltransferase activity (H4-K16 specific) // inferred from direct assay /// 0097363 // protein O-GlcNAc transferase activity // inferred from sequence or structural similarity 107.22 165.11 4.39 0.00 0.01 -4.47
221475_s_at 221475_s_at NM_002948 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_002948.1 /DEF=Homo sapiens ribosomal protein L15 (RPL15), mRNA. /FEA=CDS /GEN=RPL15 /PROD=ribosomal protein L15 /DB_XREF=gi:4506602 /UG=Hs.74267 ribosomal protein L15 /FL=gb:AF279903.1 gb:L25899.1 gb:NM_002948.1 NM_002948 ribosomal protein L15 RPL15 6138 NM_001253379 /// NM_001253380 /// NM_001253382 /// NM_001253383 /// NM_001253384 /// NM_002948 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -610.97 2090.21 -4.39 0.00 0.01 -4.47
217040_x_at 217040_x_at AB025355 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB025355 /DEF=Homo sapiens gene for SOX20, partial cds /FEA=CDS /DB_XREF=gi:5103146 /UG=Hs.247687 Homo sapiens gene for SOX20, partial cds AB025355 SRY (sex determining region Y)-box 15 SOX15 6665 NM_006942 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006325 // chromatin organization // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0008584 // male gonad development // traceable author statement /// 0014718 // positive regulation of satellite cell activation involved in skeletal muscle regeneration // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from sequence or structural similarity /// 0043403 // skeletal muscle tissue regeneration // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048627 // myoblast development // inferred from sequence or structural similarity /// 0070318 // positive regulation of G0 to G1 transition // inferred from sequence or structural similarity /// 2000288 // positive regulation of myoblast proliferation // inferred from sequence or structural similarity 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // non-traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -37.35 72.70 -4.39 0.00 0.01 -4.47
204747_at 204747_at NM_001549 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001549.1 /DEF=Homo sapiens interferon-induced protein with tetratricopeptide repeats 4 (IFIT4), mRNA. /FEA=mRNA /GEN=IFIT4 /PROD=interferon-induced protein withtetratricopeptide repeats 4 /DB_XREF=gi:4504586 /UG=Hs.181874 interferon-induced protein with tetratricopeptide repeats 4 /FL=gb:BC001383.1 gb:BC004977.1 gb:U52513.1 gb:AF026939.1 gb:AF083470.1 gb:NM_001549.1 NM_001549 interferon-induced protein with tetratricopeptide repeats 3 IFIT3 3437 NM_001031683 /// NM_001289758 /// NM_001289759 /// NM_001549 0002376 // immune system process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009615 // response to virus // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0035457 // cellular response to interferon-alpha // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060337 // type I interferon signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction -44.35 46.77 -4.39 0.00 0.01 -4.47
212099_at 212099_at AI263909 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI263909 /FEA=EST /DB_XREF=gi:3872112 /DB_XREF=est:qi08f09.x1 /CLONE=IMAGE:1855913 /UG=Hs.204354 ras homolog gene family, member B /FL=gb:NM_004040.1 AI263909 ras homolog family member B RHOB 388 NM_004040 0000910 // cytokinesis // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006927 // transformed cell apoptotic process // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008333 // endosome to lysosome transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0045786 // negative regulation of cell cycle // inferred from sequence or structural similarity /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay /// 0071479 // cellular response to ionizing radiation // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0019003 // GDP binding // inferred from electronic annotation -415.25 2368.25 -4.39 0.00 0.01 -4.47
202715_at 202715_at NM_004341 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004341.1 /DEF=Homo sapiens carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (CAD), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=CAD /PROD=carbamoyl-phosphate synthetase 2, aspartatetranscarbamylase, and dihydroorotase /DB_XREF=gi:4757895 /UG=Hs.154868 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase /FL=gb:D78586.1 gb:NM_004341.1 NM_004341 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase CAD 790 NM_004341 /// XM_005264555 /// XM_005264556 /// XM_005264557 /// XM_005264558 /// XM_006712101 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006207 // 'de novo' pyrimidine nucleobase biosynthetic process // inferred from direct assay /// 0006207 // 'de novo' pyrimidine nucleobase biosynthetic process // inferred from sequence or structural similarity /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from sequence or structural similarity /// 0006543 // glutamine catabolic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0014075 // response to amine // inferred from electronic annotation /// 0017144 // drug metabolic process // inferred from sequence or structural similarity /// 0018107 // peptidyl-threonine phosphorylation // inferred from sequence or structural similarity /// 0031000 // response to caffeine // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0044205 // 'de novo' UMP biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046134 // pyrimidine nucleoside biosynthetic process // traceable author statement /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0051414 // response to cortisol // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0070409 // carbamoyl phosphate biosynthetic process // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0042995 // cell projection // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043195 // terminal bouton // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004070 // aspartate carbamoyltransferase activity // inferred from sequence or structural similarity /// 0004070 // aspartate carbamoyltransferase activity // traceable author statement /// 0004088 // carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity // inferred from sequence or structural similarity /// 0004088 // carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity // traceable author statement /// 0004151 // dihydroorotase activity // inferred from direct assay /// 0004151 // dihydroorotase activity // inferred from sequence or structural similarity /// 0004151 // dihydroorotase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from direct assay /// 0008716 // D-alanine-D-alanine ligase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016743 // carboxyl- or carbamoyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016812 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070335 // aspartate binding // inferred from sequence or structural similarity 51.90 156.35 4.39 0.00 0.01 -4.47
64899_at 64899_at AA209463 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA209463:zq84h11.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-648357 /clone_end=3' /gb=AA209463 /gi=1807425 /ug=Hs.6846 /len=533 AA209463 lipid phosphate phosphatase-related protein type 2 LPPR2 64748 NM_001170635 /// NM_022737 /// XM_005260017 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 62.05 99.42 4.39 0.00 0.01 -4.47
202559_x_at 202559_x_at AW005776 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW005776 /FEA=EST /DB_XREF=gi:5854554 /DB_XREF=est:wz89d09.x1 /CLONE=IMAGE:2566001 /UG=Hs.323817 DKFZP547E1010 protein /FL=gb:NM_015607.1 AW005776 chromatin target of PRMT1 CHTOP 26097 NM_001206612 /// NM_001244664 /// NM_015607 /// XM_005245085 /// XM_005245086 /// XM_006711269 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051096 // positive regulation of helicase activity // inferred from direct assay 0000346 // transcription export complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -162.28 258.36 -4.38 0.00 0.01 -4.47
201038_s_at 201038_s_at T67821 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:T67821 /FEA=EST /DB_XREF=gi:678969 /DB_XREF=est:yc39d08.s1 /CLONE=IMAGE:83055 /UG=Hs.285013 putative human HLA class II associated protein I /FL=gb:U60823.1 gb:U73477.1 gb:AF025684.1 gb:NM_006305.1 T67821 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A ANP32A 8125 NM_006305 /// XM_006720707 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 48.85 72.50 4.38 0.00 0.01 -4.47
202125_s_at 202125_s_at NM_015049 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015049.1 /DEF=Homo sapiens amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 3 (ALS2CR3), mRNA. /FEA=mRNA /GEN=ALS2CR3 /PROD=amyotrophic lateral sclerosis 2 (juvenile)chromosome region, candidate 3 /DB_XREF=gi:13027379 /UG=Hs.154248 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 3 /FL=gb:AB038951.1 gb:NM_015049.1 NM_015049 trafficking protein, kinesin binding 2 TRAK2 66008 NM_015049 /// XM_006712714 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0006605 // protein targeting // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation /// 0050811 // GABA receptor binding // non-traceable author statement 35.17 120.59 4.38 0.00 0.01 -4.47
219997_s_at 219997_s_at NM_022730 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022730.1 /DEF=Homo sapiens hypothetical protein FLJ12612 similar to COP9 (constitutive photomorphogenic), subunit 7b (Arabidopsis) (FLJ12612), mRNA. /FEA=mRNA /GEN=FLJ12612 /PROD=hypothetical protein FLJ12612 similar to COP9(constitutive photomorphogenic), subunit 7b (Arabidopsis) /DB_XREF=gi:12232384 /UG=Hs.114432 hypothetical protein FLJ12612 similar to COP9 (constitutive photomorphogenic), subunit 7b (Arabidopsis) /FL=gb:NM_022730.1 NM_022730 COP9 signalosome subunit 7B COPS7B 64708 NM_001282949 /// NM_001282950 /// NM_001282951 /// NM_001282952 /// NM_022730 /// XM_006712692 /// XM_006712693 0010388 // cullin deneddylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // COP9 signalosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 57.30 72.25 4.38 0.00 0.01 -4.47
217211_at 217211_at D50604 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D50604 /DEF=Human beta-cytoplasmic actin (ACTBP9) pseudogene /FEA=CDS /DB_XREF=gi:2094759 /UG=Hs.248007 Human beta-cytoplasmic actin (ACTBP9) pseudogene D50604 /// actin, beta pseudogene 9 ACTBP9 /// ACTBP9 85.38 149.19 4.38 0.00 0.01 -4.47
208925_at 208925_at AF161522 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF161522.1 /DEF=Homo sapiens HSPC174 mRNA, complete cds. /FEA=mRNA /PROD=HSPC174 /DB_XREF=gi:6841567 /UG=Hs.107393 chromosome 3 open reading frame 4 /FL=gb:NM_019895.1 gb:AF161522.1 AF161522 claudin domain containing 1 CLDND1 56650 NM_001040181 /// NM_001040182 /// NM_001040183 /// NM_001040184 /// NM_001040199 /// NM_001040200 /// NM_019895 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 54.52 111.91 4.37 0.00 0.01 -4.47
210102_at 210102_at BC001234 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001234.1 /DEF=Homo sapiens, Similar to loss of heterozygosity, 11, chromosomal region 2, gene A, clone MGC:4904, mRNA, complete cds. /FEA=mRNA /PROD=Similar to loss of heterozygosity, 11,chromosomal region 2, gene A /DB_XREF=gi:12654782 /UG=Hs.152944 loss of heterozygosity, 11, chromosomal region 2, gene A /FL=gb:BC001234.1 BC001234 von Willebrand factor A domain containing 5A VWA5A 4013 NM_001130142 /// NM_014622 /// NM_198315 0005634 // nucleus // inferred from direct assay 35.85 44.85 4.37 0.00 0.01 -4.47
202633_at 202633_at NM_007027 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007027.1 /DEF=Homo sapiens topoisomerase (DNA) II binding protein (TOPBP1), mRNA. /FEA=mRNA /GEN=TOPBP1 /PROD=topoisomerase (DNA) II binding protein /DB_XREF=gi:5902137 /UG=Hs.91417 topoisomerase (DNA) II binding protein /FL=gb:AB019397.1 gb:NM_007027.1 NM_007027 topoisomerase (DNA) II binding protein 1 TOPBP1 11073 NM_007027 /// XM_005247076 0006259 // DNA metabolic process // traceable author statement /// 0006281 // DNA repair // non-traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from direct assay 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000922 // spindle pole // inferred from electronic annotation /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 37.53 123.94 4.37 0.00 0.01 -4.47
212208_at 212208_at AK023837 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023837.1 /DEF=Homo sapiens cDNA FLJ13775 fis, clone PLACE4000369, moderately similar to Homo sapiens thyroid hormone receptor-associated protein complex component TRAP240 mRNA. /FEA=mRNA /DB_XREF=gi:10435894 /UG=Hs.4084 KIAA1025 protein AK023837 mediator complex subunit 13-like MED13L 23389 NM_015335 /// XM_006719305 /// XM_006719306 /// XM_006719307 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation 0001104 // RNA polymerase II transcription cofactor activity // inferred from electronic annotation -46.00 111.78 -4.37 0.00 0.01 -4.47
209011_at 209011_at BF223718 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF223718 /FEA=EST /DB_XREF=gi:11130896 /DB_XREF=est:7q34g07.x1 /CLONE=IMAGE:3700405 /UG=Hs.171957 triple functional domain (PTPRF interacting) /FL=gb:AF091395.1 BF223718 trio Rho guanine nucleotide exchange factor TRIO 7204 NM_007118 /// XM_006714495 /// XR_241714 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043087 // regulation of GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation -355.62 354.36 -4.37 0.00 0.01 -4.47
213377_x_at 213377_x_at AI799007 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI799007 /FEA=EST /DB_XREF=gi:5364479 /DB_XREF=est:we97d07.x1 /CLONE=IMAGE:2349037 /UG=Hs.285405 ribosomal protein S12 AI799007 ribosomal protein S12 RPS12 6206 NM_001016 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -677.43 3499.81 -4.37 0.00 0.01 -4.47
208832_at 208832_at AW241832 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW241832 /FEA=EST /DB_XREF=gi:6575586 /DB_XREF=est:xn75g09.x1 /CLONE=IMAGE:2700352 /UG=Hs.13493 like mouse brain protein E46 /FL=gb:AL050282.1 gb:AF119662.1 gb:NM_013236.1 AW241832 ataxin 10 ATXN10 25814 NM_001167621 /// NM_013236 0007399 // nervous system development // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation 39.65 93.90 4.36 0.00 0.01 -4.47
201548_s_at 201548_s_at W02593 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W02593 /FEA=EST /DB_XREF=gi:1274571 /DB_XREF=est:za51e06.r1 /CLONE=IMAGE:296098 /UG=Hs.143323 putative DNAchromatin binding motif /FL=gb:NM_006618.1 W02593 lysine (K)-specific demethylase 5B KDM5B 10765 NM_006618 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034720 // histone H3-K4 demethylation // inferred from direct assay /// 0034721 // histone H3-K4 demethylation, trimethyl-H3-K4-specific // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0032453 // histone demethylase activity (H3-K4 specific) // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // inferred from direct assay /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -115.92 183.04 -4.36 0.00 0.01 -4.47
211197_s_at 211197_s_at AL355690 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL355690.1 /DEF=Homo sapiens EST from clone 34465, full insert. /FEA=mRNA /DB_XREF=gi:7799138 /UG=Hs.14155 KIAA0653 protein, B7-like protein /FL=gb:AF216749.1 gb:AF289028.1 AL355690 inducible T-cell co-stimulator ligand ICOSLG 23308 NM_001283050 /// NM_001283051 /// NM_001283052 /// NM_015259 /// XM_005261098 0002376 // immune system process // inferred from electronic annotation /// 0006952 // defense response // non-traceable author statement /// 0006972 // hyperosmotic response // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0042104 // positive regulation of activated T cell proliferation // traceable author statement /// 0042110 // T cell activation // non-traceable author statement /// 0042113 // B cell activation // inferred from electronic annotation /// 0045404 // positive regulation of interleukin-4 biosynthetic process // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -37.60 28.07 -4.36 0.00 0.01 -4.47
217388_s_at 217388_s_at D55639 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D55639.1 /DEF=Human monocyte PABL (pseudoautosomal boundary-like sequence) mRNA, clone Mo1. /FEA=mRNA /DB_XREF=gi:1255614 /UG=Hs.169139 kynureninase (L-kynurenine hydrolase) D55639 kynureninase KYNU 8942 NM_001032998 /// NM_001199241 /// NM_003937 0006569 // tryptophan catabolic process // inferred from mutant phenotype /// 0006569 // tryptophan catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019441 // tryptophan catabolic process to kynurenine // inferred from electronic annotation /// 0019442 // tryptophan catabolic process to acetyl-CoA // inferred from electronic annotation /// 0019805 // quinolinate biosynthetic process // inferred from direct assay /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0034354 // 'de novo' NAD biosynthetic process from tryptophan // inferred from electronic annotation /// 0034516 // response to vitamin B6 // inferred from mutant phenotype /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043420 // anthranilate metabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0097053 // L-kynurenine catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0030429 // kynureninase activity // inferred from direct assay /// 0030429 // kynureninase activity // inferred from mutant phenotype /// 0030429 // kynureninase activity // traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay -35.12 19.66 -4.36 0.00 0.01 -4.47
221702_s_at 221702_s_at AF353992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF353992.1 /DEF=Homo sapiens BBP-like protein 2 (BLP2) mRNA, complete cds. /FEA=mRNA /GEN=BLP2 /PROD=BBP-like protein 2 /DB_XREF=gi:13625462 /FL=gb:AF353992.1 AF353992 TM2 domain containing 3 TM2D3 80213 NM_025141 /// NM_078474 /// XM_005254980 /// XM_005254981 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 54.38 183.46 4.36 0.00 0.01 -4.47
221477_s_at 221477_s_at BF575213 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF575213 /FEA=EST /DB_XREF=gi:11648925 /DB_XREF=est:602133624F1 /CLONE=IMAGE:4288756 /UG=Hs.177781 Homo sapiens, clone MGC:5618, mRNA, complete cds /FL=gb:BC001980.1 BF575213 uncharacterized LOC100129518 /// superoxide dismutase 2, mitochondrial LOC100129518 /// SOD2 6648 /// 100129518 NM_000636 /// NM_001024465 /// NM_001024466 /// NR_037166 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000303 // response to superoxide // inferred from mutant phenotype /// 0001306 // age-dependent response to oxidative stress // inferred from electronic annotation /// 0001315 // age-dependent response to reactive oxygen species // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from electronic annotation /// 0003032 // detection of oxygen // inferred from electronic annotation /// 0003069 // vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006801 // superoxide metabolic process // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010042 // response to manganese ion // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010269 // response to selenium ion // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032364 // oxygen homeostasis // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033591 // response to L-ascorbic acid // inferred from electronic annotation /// 0034021 // response to silicon dioxide // inferred from electronic annotation /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048773 // erythrophore differentiation // inferred from electronic annotation /// 0050665 // hydrogen peroxide biosynthetic process // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from physical interaction /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071361 // cellular response to ethanol // inferred from electronic annotation /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0030145 // manganese ion binding // traceable author statement /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -810.72 469.24 -4.35 0.00 0.01 -4.47
204339_s_at 204339_s_at BC000737 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000737.1 /DEF=Homo sapiens, regulator of G-protein signalling 4, clone MGC:2124, mRNA, complete cds. /FEA=mRNA /PROD=regulator of G-protein signalling 4 /DB_XREF=gi:12653888 /UG=Hs.227571 regulator of G-protein signalling 4 /FL=gb:NM_005613.2 gb:BC000737.1 BC000737 regulator of G-protein signaling 4 RGS4 5999 NM_001102445 /// NM_001113380 /// NM_001113381 /// NM_005613 0000188 // inactivation of MAPK activity // traceable author statement /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0001965 // G-protein alpha-subunit binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005516 // calmodulin binding // traceable author statement 70.90 172.97 4.35 0.00 0.01 -4.47
201327_s_at 201327_s_at NM_001762 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001762.1 /DEF=Homo sapiens chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A), mRNA. /FEA=mRNA /GEN=CCT6A /PROD=chaperonin containing TCP1, subunit 6A (zeta 1) /DB_XREF=gi:4502642 /UG=Hs.82916 chaperonin containing TCP1, subunit 6A (zeta 1) /FL=gb:M94083.1 gb:NM_001762.1 gb:L27706.1 NM_001762 chaperonin containing TCP1, subunit 6A (zeta 1) CCT6A 908 NM_001009186 /// NM_001762 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 99.40 403.48 4.35 0.00 0.01 -4.47
201801_s_at 201801_s_at AF079117 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF079117.1 /DEF=Homo sapiens equilibrative NBMPR-sensitive nucleoside transporter (ENT1) mRNA, complete cds. /FEA=mRNA /GEN=ENT1 /PROD=equilibrative NBMPR-sensitive nucleosidetransporter /DB_XREF=gi:3694939 /UG=Hs.25450 solute carrier family 29 (nucleoside transporters), member 1 /FL=gb:BC001382.1 gb:U81375.1 gb:AF079117.1 gb:NM_004955.1 AF079117 solute carrier family 29 (equilibrative nucleoside transporter), member 1 SLC29A1 2030 NM_001078174 /// NM_001078175 /// NM_001078176 /// NM_001078177 /// NM_004955 /// XM_005248875 /// XM_005248876 /// XM_005248878 /// XM_005248879 /// XM_005248880 /// XM_005248881 /// XM_005248882 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0015858 // nucleoside transport // inferred from direct assay /// 0015862 // uridine transport // inferred from electronic annotation /// 0030431 // sleep // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 1901642 // nucleoside transmembrane transport // inferred from electronic annotation /// 1901642 // nucleoside transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005337 // nucleoside transmembrane transporter activity // inferred from electronic annotation 140.93 348.79 4.35 0.00 0.01 -4.47
209021_x_at 209021_x_at BC001331 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001331.1 /DEF=Homo sapiens, Similar to KIAA0652 gene product, clone MGC:5568, mRNA, complete cds. /FEA=mRNA /PROD=Similar to KIAA0652 gene product /DB_XREF=gi:12654966 /UG=Hs.79672 KIAA0652 gene product /FL=gb:BC001331.1 gb:BC002378.1 BC001331 autophagy related 13 ATG13 9776 NM_001142673 /// NM_001205119 /// NM_001205120 /// NM_001205121 /// NM_001205122 /// NM_014741 /// XM_005253262 /// XM_005253263 /// XM_005253265 /// XM_005253266 /// XM_005253268 /// XM_006718394 /// XM_006718395 /// XM_006718396 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0006914 // autophagy // inferred from electronic annotation 0000407 // pre-autophagosomal structure // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0034273 // Atg1p signaling complex // /// 0070969 // ULK1-ATG13-FIP200 complex // inferred from physical interaction 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction -62.58 60.19 -4.35 0.00 0.01 -4.47
214212_x_at 214212_x_at AI928241 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI928241 /FEA=EST /DB_XREF=gi:5664205 /DB_XREF=est:wo95g11.x1 /CLONE=IMAGE:2463140 /UG=Hs.75260 mitogen inducible 2 AI928241 fermitin family member 2 FERMT2 10979 NM_001134999 /// NM_001135000 /// NM_006832 /// XM_005267285 /// XM_006720008 /// XM_006720009 /// XM_006720010 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from mutant phenotype /// 0007160 // cell-matrix adhesion // inferred from sequence or structural similarity /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // non-traceable author statement /// 0033622 // integrin activation // inferred from mutant phenotype /// 0034329 // cell junction assembly // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0048041 // focal adhesion assembly // inferred from sequence or structural similarity /// 0072657 // protein localization to membrane // inferred from sequence or structural similarity 0001725 // stress fiber // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation -45.15 108.47 -4.35 0.00 0.01 -4.47
201388_at 201388_at NM_002809 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002809.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 (PSMD3), mRNA. /FEA=mRNA /GEN=PSMD3 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 3 /DB_XREF=gi:4506228 /UG=Hs.9736 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 /FL=gb:BC000074.1 gb:BC004859.1 gb:D67025.1 gb:AF091075.1 gb:NM_002809.1 NM_002809 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 PSMD3 5709 NM_002809 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation 56.28 189.51 4.35 0.00 0.01 -4.47
200670_at 200670_at NM_005080 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005080.1 /DEF=Homo sapiens X-box binding protein 1 (XBP1), mRNA. /FEA=mRNA /GEN=XBP1 /PROD=X-box binding protein 1 /DB_XREF=gi:4827057 /UG=Hs.149923 X-box binding protein 1 /FL=gb:BC000938.1 gb:M31627.1 gb:NM_005080.1 NM_005080 X-box binding protein 1 XBP1 7494 NM_001079539 /// NM_005080 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0060096 // serotonin secretion, neurotransmission // inferred from electronic annotation /// 0060691 // epithelial cell maturation involved in salivary gland development // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // inferred from electronic annotation /// 1900103 // positive regulation of endoplasmic reticulum unfolded protein response // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -143.15 301.62 -4.35 0.00 0.01 -4.47
200698_at 200698_at AL542253 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL542253 /FEA=EST /DB_XREF=gi:12874115 /DB_XREF=est:AL542253 /CLONE=CS0DE008YC08 (3 prime) /UG=Hs.118778 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 /FL=gb:NM_006854.2 AL542253 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 KDELR2 11014 NM_001100603 /// NM_006854 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005046 // KDEL sequence binding // traceable author statement /// 0046923 // ER retention sequence binding // inferred from electronic annotation 236.77 748.71 4.34 0.00 0.01 -4.47
201775_s_at 201775_s_at AA676790 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA676790 /FEA=EST /DB_XREF=gi:2657312 /DB_XREF=est:zj64h12.s1 /CLONE=IMAGE:455111 /UG=Hs.62515 KIAA0494 gene product /FL=gb:BC002525.1 gb:AB007963.1 gb:NM_014774.1 AA676790 EF-hand calcium binding domain 14 EFCAB14 9813 NM_014774 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 52.58 149.31 4.34 0.00 0.01 -4.47
215253_s_at 215253_s_at AL049369 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049369.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586D0518 (from clone DKFZp586D0518). /FEA=mRNA /DB_XREF=gi:4500160 /UG=Hs.250724 Homo sapiens mRNA; cDNA DKFZp586D0518 (from clone DKFZp586D0518) AL049369 regulator of calcineurin 1 RCAN1 1827 NM_001285389 /// NM_001285391 /// NM_001285392 /// NM_001285393 /// NM_004414 /// NM_203417 /// NM_203418 /// XM_005260929 /// XM_005260930 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007417 // central nervous system development // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008015 // blood circulation // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0051151 // negative regulation of smooth muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction -80.20 111.30 -4.34 0.00 0.01 -4.47
219620_x_at 219620_x_at NM_017723 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017723.1 /DEF=Homo sapiens hypothetical protein FLJ20245 (FLJ20245), mRNA. /FEA=mRNA /GEN=FLJ20245 /PROD=hypothetical protein FLJ20245 /DB_XREF=gi:8923220 /UG=Hs.169758 hypothetical protein FLJ20245 /FL=gb:NM_017723.1 NM_017723 torsin family 4, member A TOR4A 54863 NM_017723 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 54.05 75.17 4.34 0.00 0.01 -4.47
212014_x_at 212014_x_at AI493245 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI493245 /FEA=EST /DB_XREF=gi:4394248 /DB_XREF=est:ti30d08.x1 /CLONE=IMAGE:2131983 /UG=Hs.169610 CD44 antigen (homing function and Indian blood group system) AI493245 CD44 molecule (Indian blood group) CD44 960 NM_000610 /// NM_001001389 /// NM_001001390 /// NM_001001391 /// NM_001001392 /// NM_001202555 /// NM_001202556 /// NM_001202557 /// XM_005253231 /// XM_005253232 /// XM_005253233 /// XM_005253234 /// XM_005253235 /// XM_005253238 /// XM_005253239 /// XM_005253240 /// XM_006718388 /// XM_006718389 /// XM_006718390 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0002246 // wound healing involved in inflammatory response // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // non-traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // inferred from direct assay /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034116 // positive regulation of heterotypic cell-cell adhesion // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0051216 // cartilage development // inferred from expression pattern /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070487 // monocyte aggregation // inferred from mutant phenotype /// 1900625 // positive regulation of monocyte aggregation // inferred from mutant phenotype /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004415 // hyalurononglucosaminidase activity // inferred from direct assay /// 0004888 // transmembrane signaling receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0005540 // hyaluronic acid binding // inferred from direct assay /// 0005540 // hyaluronic acid binding // non-traceable author statement -43.38 61.71 -4.34 0.00 0.01 -4.47
209326_at 209326_at D84454 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D84454.1 /DEF=Human mRNA for UDP-galactose translocator, complete cds. /FEA=mRNA /PROD=UDP-galactose translocator /DB_XREF=gi:1526437 /UG=Hs.21899 solute carrier family 35 (UDP-galactose transporter), member 2 /FL=gb:D84454.1 D84454 solute carrier family 35 (UDP-galactose transporter), member A2 SLC35A2 7355 NM_001032289 /// NM_001042498 /// NM_001282647 /// NM_001282648 /// NM_001282649 /// NM_001282650 /// NM_001282651 /// NM_005660 0006012 // galactose metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015780 // nucleotide-sugar transport // inferred from electronic annotation /// 0015785 // UDP-galactose transport // traceable author statement /// 0015992 // proton transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0072334 // UDP-galactose transmembrane transport // inferred from electronic annotation /// 1901679 // nucleotide transmembrane transport // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:proton symporter activity // inferred from electronic annotation /// 0005459 // UDP-galactose transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 38.12 96.19 4.34 0.00 0.01 -4.47
219737_s_at 219737_s_at AI524125 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI524125 /FEA=EST /DB_XREF=gi:4438260 /DB_XREF=est:th09d11.x1 /CLONE=IMAGE:2117781 /UG=Hs.12450 protocadherin 9 /FL=gb:AF169692.2 gb:NM_020403.1 AI524125 protocadherin 9 PCDH9 5101 NM_020403 /// NM_203487 /// XM_005266406 /// XM_005266407 /// XM_005266408 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 46.30 45.77 4.34 0.00 0.01 -4.47
209820_s_at 209820_s_at BC002361 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002361.1 /DEF=Homo sapiens, Similar to transducin (beta)-like 3, clone MGC:8613, mRNA, complete cds. /FEA=mRNA /PROD=Similar to transducin (beta)-like 3 /DB_XREF=gi:12803114 /UG=Hs.322490 Homo sapiens, Similar to transducin (beta)-like 3, clone MGC:8613, mRNA, complete cds /FL=gb:BC002361.1 BC002361 transducin (beta)-like 3 TBL3 10607 NM_006453 0006364 // rRNA processing // inferred from electronic annotation /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0007199 // G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger // traceable author statement /// 0010310 // regulation of hydrogen peroxide metabolic process // traceable author statement /// 0022617 // extracellular matrix disassembly // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // traceable author statement /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0060263 // regulation of respiratory burst // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032040 // small-subunit processome // inferred from electronic annotation /// 0043020 // NADPH oxidase complex // inferred from direct assay 0005057 // receptor signaling protein activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0016176 // superoxide-generating NADPH oxidase activator activity // inferred from electronic annotation /// 0016176 // superoxide-generating NADPH oxidase activator activity // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 38.70 45.17 4.33 0.00 0.01 -4.47
204363_at 204363_at NM_001993 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001993.2 /DEF=Homo sapiens coagulation factor III (thromboplastin, tissue factor) (F3), mRNA. /FEA=mRNA /GEN=F3 /PROD=coagulation factor III precursor /DB_XREF=gi:10518499 /UG=Hs.62192 coagulation factor III (thromboplastin, tissue factor) /FL=gb:NM_001993.2 gb:J02931.1 gb:M16553.1 gb:M27436.1 NM_001993 coagulation factor III (thromboplastin, tissue factor) F3 2152 NM_001178096 /// NM_001993 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0002541 // activation of plasma proteins involved in acute inflammatory response // inferred from direct assay /// 0002543 // activation of blood coagulation via clotting cascade // inferred by curator /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007596 // blood coagulation // traceable author statement /// 0007598 // blood coagulation, extrinsic pathway // traceable author statement /// 0007599 // hemostasis // inferred from electronic annotation /// 0010641 // positive regulation of platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0030335 // positive regulation of cell migration // traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0050927 // positive regulation of positive chemotaxis // inferred by curator /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031233 // intrinsic component of external side of plasma membrane // inferred by curator /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from direct assay -55.00 36.83 -4.33 0.00 0.01 -4.47
212190_at 212190_at AL541302 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL541302 /FEA=EST /DB_XREF=gi:12872241 /DB_XREF=est:AL541302 /CLONE=CS0DE006YI10 (5 prime) /UG=Hs.21858 trinucleotide repeat containing 3 AL541302 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 SERPINE2 5270 NM_001136528 /// NM_001136530 /// NM_006216 /// NR_073116 /// XM_005246641 /// XM_005246642 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // inferred from electronic annotation /// 0010757 // negative regulation of plasminogen activation // inferred from mutant phenotype /// 0010766 // negative regulation of sodium ion transport // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0010955 // negative regulation of protein processing // inferred by curator /// 0014067 // negative regulation of phosphatidylinositol 3-kinase signaling // inferred from electronic annotation /// 0021683 // cerebellar granular layer morphogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // inferred by curator /// 0030195 // negative regulation of blood coagulation // inferred from direct assay /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030334 // regulation of cell migration // non-traceable author statement /// 0032940 // secretion by cell // inferred from electronic annotation /// 0033363 // secretory granule organization // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042628 // mating plug formation // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0045879 // negative regulation of smoothened signaling pathway // inferred from electronic annotation /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from direct assay /// 0050974 // detection of mechanical stimulus involved in sensory perception // inferred from electronic annotation /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060384 // innervation // inferred from electronic annotation /// 0061108 // seminal vesicle epithelium development // inferred from electronic annotation /// 0090331 // negative regulation of platelet aggregation // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031091 // platelet alpha granule // inferred from direct assay /// 0031091 // platelet alpha granule // inferred from mutant phenotype /// 0031232 // extrinsic component of external side of plasma membrane // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from sequence or structural similarity 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from mutant phenotype /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005539 // glycosaminoglycan binding // inferred from direct assay /// 0008201 // heparin binding // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -101.15 299.80 -4.33 0.00 0.01 -4.47
209086_x_at 209086_x_at BE964361 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE964361 /FEA=EST /DB_XREF=gi:11767830 /DB_XREF=est:601658062R1 /CLONE=IMAGE:3876255 /UG=Hs.211579 melanoma adhesion molecule /FL=gb:AF089868.1 gb:NM_006500.1 BE964361 melanoma cell adhesion molecule /// microRNA 6756 MCAM /// MIR6756 4162 /// 102465453 NM_006500 /// NR_106814 /// XM_005271551 /// XM_005271552 /// XM_006718836 /// XM_006718837 /// XM_006718838 0003094 // glomerular filtration // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0061042 // vascular wound healing // inferred from expression pattern 0005886 // plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 211.92 607.41 4.33 0.00 0.01 -4.47
219981_x_at 219981_x_at NM_017961 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017961.1 /DEF=Homo sapiens hypothetical protein FLJ20813 (FLJ20813), mRNA. /FEA=mRNA /GEN=FLJ20813 /PROD=hypothetical protein FLJ20813 /DB_XREF=gi:8923685 /UG=Hs.306203 hypothetical protein FLJ20813 /FL=gb:NM_017961.1 NM_017961 zinc finger protein 587 ZNF587 84914 NM_001204817 /// NM_032828 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 57.25 107.42 4.33 0.00 0.01 -4.47
202487_s_at 202487_s_at NM_012412 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012412.1 /DEF=Homo sapiens purine-rich element binding protein B (PURB), mRNA. /FEA=mRNA /GEN=PURB /PROD=purine-rich element binding protein B /DB_XREF=gi:6912615 /UG=Hs.301005 purine-rich element binding protein B /FL=gb:BC000098.1 gb:BC004274.1 gb:AF081192.1 gb:NM_012412.1 NM_012412 H2A histone family, member V H2AFV 94239 NM_012412 /// NM_138635 /// NM_201436 /// NM_201516 /// NM_201517 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -239.18 689.24 -4.33 0.00 0.01 -4.47
211458_s_at 211458_s_at AF180519 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF180519.1 /DEF=Homo sapiens GABA-A receptor-associated protein mRNA, complete cds. /FEA=mRNA /PROD=GABA-A receptor-associated protein /DB_XREF=gi:13241283 /UG=Hs.326776 Homo sapiens GABA-A receptor-associated protein mRNA, complete cds /FL=gb:AF180519.1 AF180519 GABA(A) receptor-associated protein like 1 /// GABA(A) receptors associated protein like 3, pseudogene GABARAPL1 /// GABARAPL3 23710 /// 23766 NM_031412 /// NR_028287 /// XM_005253344 0000045 // autophagic vacuole assembly // not recorded /// 0000422 // mitochondrion degradation // not recorded /// 0006914 // autophagy // inferred from electronic annotation /// 0012501 // programmed cell death // not recorded /// 0032258 // CVT pathway // not recorded /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0044805 // late nucleophagy // not recorded /// 0071211 // protein targeting to vacuole involved in autophagy // not recorded 0000407 // pre-autophagosomal structure // not recorded /// 0000421 // autophagic vacuole membrane // not recorded /// 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // not recorded /// 0008429 // phosphatidylethanolamine binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0050811 // GABA receptor binding // not recorded /// 0050811 // GABA receptor binding // inferred from sequence or structural similarity -122.23 224.54 -4.33 0.00 0.01 -4.47
200041_s_at 200041_s_at NM_004640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004640.1 /DEF=Homo sapiens HLA-B associated transcript-1 (D6S81E), mRNA. /FEA=mRNA /GEN=D6S81E /PROD=HLA-B associated transcript-1 /DB_XREF=gi:4758111 /UG=Hs.55296 HLA-B associated transcript-1 /FL=gb:BC004350.1 gb:NM_004640.1 NM_004640 ATP6V1G2-DDX39B readthrough (NMD candidate) /// DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B /// small nucleolar RNA, C/D box 84 ATP6V1G2-DDX39B /// DDX39B /// SNORD84 7919 /// 692199 /// 100532737 NM_004640 /// NM_080598 /// NR_003065 /// NR_037852 /// NR_037853 0000245 // spliceosomal complex assembly // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred from genetic interaction /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006406 // mRNA export from nucleus // inferred from genetic interaction /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from direct assay /// 0010501 // RNA secondary structure unwinding // inferred from direct assay /// 0015992 // proton transport // inferred from electronic annotation /// 0032786 // positive regulation of DNA-templated transcription, elongation // inferred from mutant phenotype /// 0046784 // viral mRNA export from host cell nucleus // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 2000002 // negative regulation of DNA damage checkpoint // inferred from mutant phenotype 0000346 // transcription export complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005687 // U4 snRNP // inferred from direct assay /// 0005688 // U6 snRNP // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008186 // RNA-dependent ATPase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0017070 // U6 snRNA binding // inferred from direct assay /// 0030621 // U4 snRNA binding // inferred from direct assay /// 0043008 // ATP-dependent protein binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -312.15 1329.62 -4.33 0.00 0.01 -4.47
204395_s_at 204395_s_at AI338653 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI338653 /FEA=EST /DB_XREF=gi:4075580 /DB_XREF=est:qt52e03.x1 /CLONE=IMAGE:1951612 /UG=Hs.211569 G protein-coupled receptor kinase 5 /FL=gb:L15388.1 gb:NM_005308.1 AI338653 G protein-coupled receptor kinase 5 GRK5 2869 NM_005308 /// XM_005269707 /// XM_005269708 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // traceable author statement /// 0007217 // tachykinin receptor signaling pathway // inferred from direct assay /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -53.60 131.78 -4.33 0.00 0.01 -4.47
217741_s_at 217741_s_at AW471220 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW471220 /FEA=EST /DB_XREF=gi:7041326 /DB_XREF=est:xv13g08.x1 /CLONE=IMAGE:2813054 /UG=Hs.3776 zinc finger protein 216 /FL=gb:AF062346.1 gb:NM_006007.1 AW471220 zinc finger, AN1-type domain 5 ZFAND5 7763 NM_001102420 /// NM_001102421 /// NM_001278243 /// NM_001278244 /// NM_001278245 /// NM_006007 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001944 // vasculature development // inferred from electronic annotation /// 0003016 // respiratory system process // inferred from electronic annotation /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0060324 // face development // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -275.28 665.79 -4.32 0.00 0.01 -4.47
208985_s_at 208985_s_at BC002719 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002719.1 /DEF=Homo sapiens, eukaryotic translation initiation factor 3, subunit 1 (alpha, 35kD), clone MGC:3801, mRNA, complete cds. /FEA=mRNA /PROD=eukaryotic translation initiation factor 3,subunit 1 (alpha, 35kD) /DB_XREF=gi:12803762 /UG=Hs.173987 eukaryotic translation initiation factor 3, subunit 1 (alpha, 35kD) /FL=gb:BC002719.1 gb:AF090923.1 BC002719 eukaryotic translation initiation factor 3, subunit J EIF3J 8669 NM_001284335 /// NM_001284336 /// NM_003758 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0005515 // protein binding // inferred from physical interaction 59.90 364.90 4.32 0.00 0.01 -4.47
218157_x_at 218157_x_at NM_020239 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020239.2 /DEF=Homo sapiens small protein effector 1 of Cdc42 (SPEC1), mRNA. /FEA=mRNA /GEN=SPEC1 /PROD=small protein effector 1 of Cdc42 /DB_XREF=gi:12965169 /UG=Hs.22065 small protein effector 1 of Cdc42 /FL=gb:AF187845.2 gb:NM_020239.2 NM_020239 CDC42 small effector 1 CDC42SE1 56882 NM_001038707 /// NM_020239 0006909 // phagocytosis // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005095 // GTPase inhibitor activity // traceable author statement 134.57 203.36 4.32 0.00 0.01 -4.47
202964_s_at 202964_s_at NM_000449 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000449.1 /DEF=Homo sapiens regulatory factor X, 5 (influences HLA class II expression) (RFX5), mRNA. /FEA=mRNA /GEN=RFX5 /PROD=regulatory factor X, 5 /DB_XREF=gi:4557842 /UG=Hs.166891 regulatory factor X, 5 (influences HLA class II expression) /FL=gb:NM_000449.1 NM_000449 regulatory factor X, 5 (influences HLA class II expression) RFX5 5993 NM_000449 /// NM_001025603 /// XM_005245405 /// XM_005245406 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 45.62 85.71 4.32 0.00 0.01 -4.47
203035_s_at 203035_s_at NM_006099 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006099.1 /DEF=Homo sapiens protein inhibitor of activated STAT3 (PIAS3), mRNA. /FEA=mRNA /GEN=PIAS3 /PROD=protein inhibitor of activated STAT3 /DB_XREF=gi:5174628 /UG=Hs.76578 protein inhibitor of activated STAT3 /FL=gb:BC001154.1 gb:AB021868.1 gb:NM_006099.1 NM_006099 protein inhibitor of activated STAT, 3 PIAS3 10401 NM_006099 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0016925 // protein sumoylation // inferred from sequence or structural similarity /// 0033235 // positive regulation of protein sumoylation // inferred from direct assay /// 0045838 // positive regulation of membrane potential // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // inferred from physical interaction 42.87 84.99 4.31 0.00 0.01 -4.47
200703_at 200703_at NM_003746 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003746.1 /DEF=Homo sapiens dynein, cytoplasmic, light polypeptide (PIN), mRNA. /FEA=mRNA /GEN=PIN /PROD=dynein, cytoplasmic, light polypeptide /DB_XREF=gi:4505812 /UG=Hs.5120 dynein, cytoplasmic, light polypeptide /FL=gb:U32944.1 gb:NM_003746.1 NM_003746 dynein, light chain, LC8-type 1 DYNLL1 8655 NM_001037494 /// NM_001037495 /// NM_003746 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007292 // female gamete generation // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0042326 // negative regulation of phosphorylation // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation 709.00 1513.65 4.31 0.00 0.01 -4.47
218516_s_at 218516_s_at NM_017813 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017813.1 /DEF=Homo sapiens hypothetical protein FLJ20421 (FLJ20421), mRNA. /FEA=mRNA /GEN=FLJ20421 /PROD=hypothetical protein FLJ20421 /DB_XREF=gi:8923391 /UG=Hs.263727 hypothetical protein FLJ20421 /FL=gb:NM_017813.1 NM_017813 inositol monophosphatase domain containing 1 IMPAD1 54928 NM_017813 0001501 // skeletal system development // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0006021 // inositol biosynthetic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030204 // chondroitin sulfate metabolic process // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0008254 // 3'-nucleotidase activity // inferred from electronic annotation /// 0008441 // 3'(2'),5'-bisphosphate nucleotidase activity // inferred from electronic annotation /// 0008934 // inositol monophosphate 1-phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052832 // inositol monophosphate 3-phosphatase activity // inferred from electronic annotation /// 0052833 // inositol monophosphate 4-phosphatase activity // inferred from electronic annotation /// 0052834 // inositol monophosphate phosphatase activity // inferred from electronic annotation -61.62 183.99 -4.30 0.00 0.01 -4.47
209088_s_at 209088_s_at T70262 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:T70262 /FEA=EST /DB_XREF=gi:681410 /DB_XREF=est:yd26b11.s1 /CLONE=IMAGE:109341 /UG=Hs.21479 ubinuclein 1 /FL=gb:AF108461.1 T70262 ubinuclein 1 UBN1 29855 NM_001079514 /// NM_001288656 /// NM_016936 /// XM_005255277 /// XM_005255278 /// XM_005255279 /// XM_005255280 /// XM_005255283 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0010923 // negative regulation of phosphatase activity // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 46.40 125.97 4.30 0.00 0.01 -4.47
203201_at 203201_at NM_000303 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000303.1 /DEF=Homo sapiens phosphomannomutase 2 (PMM2), mRNA. /FEA=mRNA /GEN=PMM2 /PROD=phosphomannomutase 2 /DB_XREF=gi:4557838 /UG=Hs.154695 phosphomannomutase 2 /FL=gb:U85773.1 gb:NM_000303.1 NM_000303 phosphomannomutase 2 PMM2 5373 NM_000303 /// XM_005255372 /// XM_005255373 /// XM_005255374 0006486 // protein glycosylation // traceable author statement /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009298 // GDP-mannose biosynthetic process // inferred from electronic annotation /// 0009298 // GDP-mannose biosynthetic process // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019307 // mannose biosynthetic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004615 // phosphomannomutase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 48.15 97.97 4.30 0.00 0.01 -4.47
221736_at 221736_at AA156777 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA156777 /FEA=EST /DB_XREF=gi:1728392 /DB_XREF=est:zl18c08.s1 /CLONE=IMAGE:502286 /UG=Hs.25431 KIAA1219 protein AA156777 Ral GTPase activating protein, beta subunit (non-catalytic) RALGAPB 57148 NM_001282917 /// NM_001282918 /// NM_020336 /// XM_005260462 /// XM_005260463 /// XM_005260464 /// XM_005260465 0032484 // Ral protein signal transduction // inferred from electronic annotation /// 0032859 // activation of Ral GTPase activity // inferred from sequence or structural similarity /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0060178 // regulation of exocyst localization // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017123 // Ral GTPase activator activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity 50.05 137.00 4.30 0.00 0.01 -4.47
212256_at 212256_at BE906572 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE906572 /FEA=EST /DB_XREF=gi:10399901 /DB_XREF=est:601502550F1 /CLONE=IMAGE:3904092 /UG=Hs.107260 hypothetical protein DKFZp586H0623 BE906572 polypeptide N-acetylgalactosaminyltransferase 10 GALNT10 55568 NM_017540 /// NM_024564 /// NM_198321 0006486 // protein glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016266 // O-glycan processing // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 104.30 194.50 4.30 0.00 0.01 -4.47
200749_at 200749_at BF112006 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF112006 /FEA=EST /DB_XREF=gi:10941619 /DB_XREF=est:7l37e05.x1 /CLONE=IMAGE:3523665 /UG=Hs.10842 RAN, member RAS oncogene family /FL=gb:BC000852.1 gb:BC004272.1 gb:M31469.1 gb:AF052578.1 gb:AF054183.1 gb:NM_006325.2 BF112006 RAN, member RAS oncogene family RAN 5901 NM_006325 /// XM_005253592 0000055 // ribosomal large subunit export from nucleus // inferred from mutant phenotype /// 0000056 // ribosomal small subunit export from nucleus // inferred from mutant phenotype /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006259 // DNA metabolic process // traceable author statement /// 0006405 // RNA export from nucleus // non-traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // traceable author statement /// 0007067 // mitotic nuclear division // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034629 // cellular protein complex localization // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0075733 // intracellular transport of virus // traceable author statement 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // traceable author statement /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050681 // androgen receptor binding // non-traceable author statement 165.10 357.43 4.30 0.00 0.01 -4.47
202981_x_at 202981_x_at NM_003031 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003031.1 /DEF=Homo sapiens seven in absentia (Drosophila) homolog 1 (SIAH1), mRNA. /FEA=mRNA /GEN=SIAH1 /PROD=seven in absentia (Drosophila) homolog 1 /DB_XREF=gi:4506946 /UG=Hs.295923 seven in absentia (Drosophila) homolog 1 /FL=gb:U76247.1 gb:U63295.1 gb:NM_003031.1 NM_003031 siah E3 ubiquitin protein ligase 1 SIAH1 6477 NM_001006610 /// NM_003031 /// XM_006721246 0006200 // ATP catabolic process // /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006515 // misfolded or incompletely synthesized protein catabolic process // /// 0006515 // misfolded or incompletely synthesized protein catabolic process // inferred from electronic annotation /// 0006625 // protein targeting to peroxisome // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0007031 // peroxisome organization // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // inferred from mutant phenotype /// 0016558 // protein import into peroxisome matrix // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from direct assay /// 0031648 // protein destabilization // inferred from electronic annotation /// 0031998 // regulation of fatty acid beta-oxidation // inferred from mutant phenotype /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0051402 // neuron apoptotic process // inferred from sequence or structural similarity /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005769 // early endosome // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // /// 0005782 // peroxisomal matrix // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030877 // beta-catenin destruction complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002020 // protease binding // inferred from physical interaction /// 0004176 // ATP-dependent peptidase activity // /// 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -114.30 317.80 -4.30 0.00 0.01 -4.47
214095_at 214095_at AW190316 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW190316 /FEA=EST /DB_XREF=gi:6464796 /DB_XREF=est:xl13g08.x1 /CLONE=IMAGE:2676158 /UG=Hs.2186 eukaryotic translation elongation factor 1 gamma AW190316 serine hydroxymethyltransferase 2 (mitochondrial) SHMT2 6472 NM_001166356 /// NM_001166357 /// NM_001166358 /// NM_001166359 /// NM_005412 /// NR_029415 /// NR_029416 /// NR_029417 /// NR_048562 0006544 // glycine metabolic process // inferred from electronic annotation /// 0006545 // glycine biosynthetic process // inferred from electronic annotation /// 0006563 // L-serine metabolic process // inferred from electronic annotation /// 0006564 // L-serine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0019264 // glycine biosynthetic process from serine // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0035999 // tetrahydrofolate interconversion // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003682 // chromatin binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004372 // glycine hydroxymethyltransferase activity // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008732 // L-allo-threonine aldolase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation -64.55 78.25 -4.30 0.00 0.01 -4.47
209706_at 209706_at AF247704 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF247704.1 /DEF=Homo sapiens homeobox protein NKX3.1 mRNA, complete cds. /FEA=mRNA /PROD=homeobox protein NKX3.1 /DB_XREF=gi:9963969 /UG=Hs.55999 NK homeobox (Drosophila), family 3, A /FL=gb:AF249670.1 gb:AF249672.1 gb:U80669.1 gb:U91540.1 gb:NM_006167.1 gb:AF247704.1 AF247704 NK3 homeobox 1 NKX3-1 4824 NM_001256339 /// NM_006167 /// NR_046072 0001655 // urogenital system development // inferred from electronic annotation /// 0001656 // metanephros development // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007275 // multicellular organismal development // traceable author statement /// 0007431 // salivary gland development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008584 // male gonad development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0030521 // androgen receptor signaling pathway // inferred from direct assay /// 0030850 // prostate gland development // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from sequence or structural similarity /// 0035690 // cellular response to drug // inferred from expression pattern /// 0035907 // dorsal aorta development // inferred from electronic annotation /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043401 // steroid hormone mediated signaling pathway // inferred from direct assay /// 0043491 // protein kinase B signaling // inferred from mutant phenotype /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048754 // branching morphogenesis of an epithelial tube // inferred from sequence or structural similarity /// 0050680 // negative regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0051781 // positive regulation of cell division // inferred from mutant phenotype /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // inferred from sequence or structural similarity /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from sequence or structural similarity /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from sequence or structural similarity /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071383 // cellular response to steroid hormone stimulus // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071850 // mitotic cell cycle arrest // inferred from direct assay /// 0071899 // negative regulation of estrogen receptor binding // inferred from direct assay /// 2000836 // positive regulation of androgen secretion // inferred from direct assay /// 2001022 // positive regulation of response to DNA damage stimulus // inferred from direct assay /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from direct assay /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from direct assay 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from direct assay /// 0000983 // RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0001047 // core promoter binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0004882 // androgen receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from direct assay /// 0030284 // estrogen receptor activity // inferred from direct assay /// 0030295 // protein kinase activator activity // inferred from direct assay /// 0030331 // estrogen receptor binding // inferred from direct assay /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043621 // protein self-association // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0097162 // MADS box domain binding // inferred from electronic annotation -42.25 54.68 -4.29 0.00 0.01 -4.47
203883_s_at 203883_s_at BG249608 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG249608 /FEA=EST /DB_XREF=gi:12759411 /DB_XREF=est:602319671F1 /CLONE=IMAGE:4415033 /UG=Hs.173656 KIAA0941 protein /FL=gb:AB023158.1 gb:NM_014904.1 BG249608 RAB11 family interacting protein 2 (class I) RAB11FIP2 22841 NM_014904 /// XM_005269629 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0030010 // establishment of cell polarity // inferred from mutant phenotype /// 0035773 // insulin secretion involved in cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0045055 // regulated secretory pathway // inferred from sequence or structural similarity /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 40.85 67.22 4.29 0.00 0.01 -4.47
212179_at 212179_at AW157501 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW157501 /FEA=EST /DB_XREF=gi:6228902 /DB_XREF=est:au83a02.x1 /CLONE=IMAGE:2782826 /UG=Hs.18368 DKFZP564B0769 protein AW157501 PNN-interacting serine/arginine-rich protein PNISR 25957 NM_015491 /// NM_032870 /// XM_005266912 /// XM_005266913 /// XM_005266914 /// XM_005266915 /// XM_005266916 /// XM_005266917 /// XM_006715450 /// XM_006715451 /// XM_006715452 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay 37.10 35.58 4.29 0.00 0.01 -4.47
206075_s_at 206075_s_at NM_001895 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001895.1 /DEF=Homo sapiens casein kinase 2, alpha 1 polypeptide (CSNK2A1), mRNA. /FEA=mRNA /GEN=CSNK2A1 /PROD=casein kinase 2, alpha 1 polypeptide /DB_XREF=gi:4503094 /UG=Hs.155140 casein kinase 2, alpha 1 polypeptide /FL=gb:M55265.1 gb:NM_001895.1 gb:J02853.1 NM_001895 casein kinase 2, alpha 1 polypeptide CSNK2A1 1457 NM_001895 /// NM_177559 /// NM_177560 /// XM_006723548 0000278 // mitotic cell cycle // traceable author statement /// 0001558 // regulation of cell growth // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // traceable author statement /// 0071174 // mitotic spindle checkpoint // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005956 // protein kinase CK2 complex // traceable author statement /// 0016580 // Sin3 complex // inferred from direct assay /// 0016581 // NuRD complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019888 // protein phosphatase regulator activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051879 // Hsp90 protein binding // traceable author statement -73.23 180.91 -4.29 0.00 0.01 -4.47
218890_x_at 218890_x_at NM_016622 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016622.1 /DEF=Homo sapiens hypothetical protein (LOC51318), mRNA. /FEA=mRNA /GEN=LOC51318 /PROD=hypothetical protein /DB_XREF=gi:7706161 /UG=Hs.93814 hypothetical protein /FL=gb:AF208849.1 gb:NM_016622.1 NM_016622 mitochondrial ribosomal protein L35 MRPL35 51318 NM_016622 /// NM_145644 /// XM_005264361 0006412 // translation // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement 45.70 99.20 4.29 0.00 0.01 -4.47
216336_x_at 216336_x_at AL031602 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031602 /DEF=Human DNA sequence from clone RP5-1174N9 on chromosome 1p34.1-35.3. Contains the gene for a novel protein with IBR domain, a (pseudo?) gene for a novel protein similar to MT1E (metallothionein 1E (functional)), ESTs, STSs, GSSs and two putative Cp... /FEA=mRNA_1 /DB_XREF=gi:6729581 /UG=Hs.283842 Human DNA sequence from clone RP5-1174N9 on chromosome 1p34.1-35.3. Contains the gene for a novel protein with IBR domain, a (pseudo?) gene for a novel protein similar to MT1E (metallothionein 1E (functional)), ESTs, STSs, GSSs and two putative CpG island AL031602 metallothionein 1E MT1E 4493 NM_175617 /// XM_005255956 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -816.95 1461.97 -4.29 0.00 0.01 -4.47
221904_at 221904_at AI141670 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI141670 /FEA=EST /DB_XREF=gi:3649127 /DB_XREF=est:ot08b12.x1 /CLONE=IMAGE:1614239 /UG=Hs.141660 chloride channel 2 AI141670 family with sequence similarity 131, member A FAM131A 131408 NM_001171093 /// NM_144635 /// XM_005247113 /// XM_005247114 /// XM_005247115 0005576 // extracellular region // inferred from electronic annotation 57.65 98.42 4.29 0.00 0.01 -4.47
210396_s_at 210396_s_at AF271775 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF271775.1 /DEF=Homo sapiens DC49 mRNA, complete cds. /FEA=mRNA /PROD=DC49 /DB_XREF=gi:12006206 /UG=Hs.307093 Homo sapiens DC49 mRNA, complete cds /FL=gb:AF271775.1 AF271775 bolA family member 2 /// SMG1 pseudogene 2 /// SMG1 pseudogene 5 BOLA2 /// SMG1P2 /// SMG1P5 440354 /// 552900 /// 595101 NM_001031827 /// NM_001031833 /// NR_002453 /// NR_002473 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from direct assay /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // non-traceable author statement /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006950 // response to stress // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046854 // phosphatidylinositol phosphorylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -51.67 212.96 -4.29 0.00 0.01 -4.47
201017_at 201017_at BG149698 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG149698 /FEA=EST /DB_XREF=gi:12661728 /DB_XREF=est:nad32e01.x1 /CLONE=IMAGE:3367368 /UG=Hs.4310 eukaryotic translation initiation factor 1A /FL=gb:BC000793.1 gb:L18960.1 gb:NM_001412.1 BG149698 eukaryotic translation initiation factor 1A, X-linked EIF1AX 1964 NM_001412 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 77.90 147.75 4.29 0.00 0.01 -4.47
217851_s_at 217851_s_at NM_016045 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016045.1 /DEF=Homo sapiens CGI-107 protein (LOC51012), mRNA. /FEA=mRNA /GEN=LOC51012 /PROD=CGI-107 protein /DB_XREF=gi:7705609 /UG=Hs.3945 CGI-107 protein /FL=gb:AF151865.1 gb:NM_016045.1 NM_016045 slowmo homolog 2 (Drosophila) SLMO2 51012 NM_001256403 /// NM_016045 0015914 // phospholipid transport // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // not recorded 1990050 // phosphatidic acid transporter activity // not recorded 38.95 57.23 4.29 0.00 0.01 -4.47
212010_s_at 212010_s_at AK025647 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025647.1 /DEF=Homo sapiens cDNA: FLJ21994 fis, clone HEP06577, highly similar to AF103803 Homo sapiens clone H41 unknown mRNA. /FEA=mRNA /DB_XREF=gi:10438231 /UG=Hs.283690 hypothetical protein /FL=gb:NM_017548.1 AK025647 CDV3 homolog (mouse) CDV3 55573 NM_001134422 /// NM_001134423 /// NM_001282762 /// NM_001282763 /// NM_001282764 /// NM_001282765 /// NM_017548 /// XM_005247588 /// XM_005247589 /// XM_005247590 /// XM_005247591 /// XM_005247592 /// XM_005247594 0008283 // cell proliferation // non-traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay -287.08 697.99 -4.28 0.00 0.01 -4.47
222129_at 222129_at AK026155 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026155.1 /DEF=Homo sapiens cDNA: FLJ22502 fis, clone HRC11383. /FEA=mRNA /DB_XREF=gi:10438915 /UG=Hs.298140 Homo sapiens cDNA: FLJ22502 fis, clone HRC11383 AK026155 family with sequence similarity 134, member A FAM134A 79137 NM_024293 /// XM_005246848 /// XM_005246849 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 39.80 73.78 4.28 0.00 0.01 -4.47
201447_at 201447_at H96549 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:H96549 /FEA=EST /DB_XREF=gi:1110035 /DB_XREF=est:yw01c09.s1 /CLONE=IMAGE:250960 /UG=Hs.239489 TIA1 cytotoxic granule-associated RNA-binding protein /FL=gb:NM_022037.1 gb:M77142.1 H96549 TIA1 cytotoxic granule-associated RNA binding protein TIA1 7072 NM_022037 /// NM_022173 /// XM_005264524 /// XM_005264525 /// XM_005264526 /// XM_005264527 /// XM_005264528 /// XM_005264530 /// XM_005264531 /// XM_005264532 /// XM_005264533 /// XR_244953 /// XR_244954 /// XR_244955 0006915 // apoptotic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0042036 // negative regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0048024 // regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0097165 // nuclear stress granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // traceable author statement /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 41.40 64.00 4.28 0.00 0.01 -4.47
209721_s_at 209721_s_at BC002857 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002857.1 /DEF=Homo sapiens, clone MGC:3442, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:3442) /DB_XREF=gi:12804008 /UG=Hs.46659 DKFZP586I2223 protein /FL=gb:BC002857.1 gb:BC001790.1 gb:NM_015438.1 gb:BC004384.1 BC002857 intermediate filament family orphan 1 IFFO1 25900 NM_001039670 /// NM_001193457 /// NM_001193459 /// NM_015438 /// NM_080730 /// NM_080731 /// NR_036467 /// XM_006718973 /// XM_006718974 /// XM_006718975 /// XM_006718976 /// XM_006718977 /// XM_006718978 /// XM_006718979 /// XM_006718980 /// XM_006718981 /// XM_006718982 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 52.08 70.76 4.28 0.00 0.01 -4.47
209108_at 209108_at AF053453 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF053453.1 /DEF=Homo sapiens tetraspan TM4SF (TSPAN-6) mRNA, complete cds. /FEA=mRNA /GEN=TSPAN-6 /PROD=tetraspan TM4SF /DB_XREF=gi:2995860 /UG=Hs.121068 transmembrane 4 superfamily member 6 /FL=gb:AF043906.1 gb:AF053453.1 gb:U84895.1 gb:NM_003270.1 gb:AF133426.1 AF053453 tetraspanin 6 TSPAN6 7105 NM_001278740 /// NM_001278741 /// NM_001278742 /// NM_001278743 /// NM_003270 0007165 // signal transduction // inferred from mutant phenotype /// 0039532 // negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 1901223 // negative regulation of NIK/NF-kappaB signaling // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction 55.10 229.47 4.28 0.00 0.01 -4.47
201257_x_at 201257_x_at NM_001006 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001006.1 /DEF=Homo sapiens ribosomal protein S3A (RPS3A), mRNA. /FEA=mRNA /GEN=RPS3A /PROD=ribosomal protein S3A /DB_XREF=gi:4506722 /UG=Hs.77039 ribosomal protein S3A /FL=gb:BC000204.1 gb:BC001708.1 gb:BC004981.1 gb:M84711.1 gb:M77234.1 gb:L13802.1 gb:NM_001006.1 NM_001006 ribosomal protein S3A /// small nucleolar RNA, C/D box 73A RPS3A /// SNORD73A 6189 /// 8944 NM_001006 /// NM_001267699 /// NR_000007 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0002181 // cytoplasmic translation // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0097194 // execution phase of apoptosis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -753.17 4556.94 -4.28 0.00 0.01 -4.47
219083_at 219083_at NM_018130 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018130.1 /DEF=Homo sapiens hypothetical protein FLJ10539 (FLJ10539), mRNA. /FEA=mRNA /GEN=FLJ10539 /PROD=hypothetical protein FLJ10539 /DB_XREF=gi:8922499 /UG=Hs.93391 hypothetical protein FLJ10539 /FL=gb:NM_018130.1 NM_018130 SHQ1, H/ACA ribonucleoprotein assembly factor SHQ1 55164 NM_018130 0022618 // ribonucleoprotein complex assembly // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 2000233 // negative regulation of rRNA processing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0015030 // Cajal body // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 55.85 123.35 4.28 0.00 0.01 -4.47
210211_s_at 210211_s_at AF028832 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF028832.1 /DEF=Homo sapiens Hsp89-alpha-delta-N mRNA, complete cds. /FEA=mRNA /PROD=Hsp89-alpha-delta-N /DB_XREF=gi:3287488 /UG=Hs.289088 heat shock 90kD protein 1, alpha /FL=gb:AF028832.1 AF028832 heat shock protein 90kDa alpha (cytosolic), class A member 1 HSP90AA1 3320 NM_001017963 /// NM_005348 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001764 // neuron migration // inferred from electronic annotation /// 0003009 // skeletal muscle contraction // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006457 // protein folding // inferred from electronic annotation /// 0006839 // mitochondrial transport // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009408 // response to heat // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0010592 // positive regulation of lamellipodium assembly // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042026 // protein refolding // traceable author statement /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045040 // protein import into mitochondrial outer membrane // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051131 // chaperone-mediated protein complex assembly // inferred from direct assay /// 0060452 // positive regulation of cardiac muscle contraction // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // traceable author statement /// 0002134 // UTP binding // inferred from electronic annotation /// 0002135 // CTP binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017098 // sulfonylurea receptor binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0030235 // nitric-oxide synthase regulator activity // inferred from direct assay /// 0030911 // TPR domain binding // inferred from direct assay /// 0030911 // TPR domain binding // traceable author statement /// 0032564 // dATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0044325 // ion channel binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 189.65 1304.65 4.27 0.00 0.01 -4.47
220651_s_at 220651_s_at NM_018518 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018518.1 /DEF=Homo sapiens homolog of yeast MCM10; hypothetical protein PRO2249 (PRO2249), mRNA. /FEA=mRNA /GEN=PRO2249 /PROD=homolog of yeast MCM10; hypothetical proteinPRO2249 /DB_XREF=gi:8924142 /UG=Hs.198363 homolog of yeast MCM10; hypothetical protein PRO2249 /FL=gb:AB042719.1 gb:BC004876.1 gb:AF119869.1 gb:NM_018518.1 NM_018518 minichromosome maintenance complex component 10 MCM10 55388 NM_018518 /// NM_182751 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 39.55 48.25 4.27 0.00 0.01 -4.47
220471_s_at 220471_s_at NM_025107 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025107.1 /DEF=Homo sapiens hypothetical protein FLJ21269 (FLJ21269), mRNA. /FEA=mRNA /GEN=FLJ21269 /PROD=hypothetical protein FLJ21269 /DB_XREF=gi:13376676 /UG=Hs.288669 hypothetical protein FLJ21269 /FL=gb:NM_025107.1 NM_025107 myc target 1 MYCT1 80177 NM_025107 0005634 // nucleus // inferred from electronic annotation -81.50 137.75 -4.27 0.00 0.01 -4.47
202930_s_at 202930_s_at NM_003850 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003850.1 /DEF=Homo sapiens succinate-CoA ligase, ADP-forming, beta subunit (SUCLA2), mRNA. /FEA=mRNA /GEN=SUCLA2 /PROD=succinate-CoA ligase, ADP-forming, beta subunit /DB_XREF=gi:11321582 /UG=Hs.182217 succinate-CoA ligase, ADP-forming, beta subunit /FL=gb:NM_003850.1 gb:AB035863.1 NM_003850 succinate-CoA ligase, ADP-forming, beta subunit SUCLA2 8803 NM_003850 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006104 // succinyl-CoA metabolic process // traceable author statement /// 0006105 // succinate metabolic process // inferred from electronic annotation /// 0006781 // succinyl-CoA pathway // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004775 // succinate-CoA ligase (ADP-forming) activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 57.73 102.84 4.27 0.00 0.01 -4.47
202684_s_at 202684_s_at AB020966 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB020966.1 /DEF=Homo sapiens hMet mRNA for RNA (guanine-N7-) methyltransferase, complete cds. /FEA=mRNA /GEN=hMet /PROD=RNA (guanine-N7-) methyltransferase /DB_XREF=gi:5478274 /UG=Hs.8086 RNA (guanine-7-) methyltransferase /FL=gb:AB007858.1 gb:AF067791.1 gb:AB022604.1 gb:NM_003799.1 gb:AB020966.1 AB020966 RNA (guanine-7-) methyltransferase RNMT 8731 NM_003799 /// XM_005258160 /// XM_005258162 /// XM_006722361 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // inferred from mutant phenotype /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0032259 // methylation // inferred from electronic annotation /// 0036265 // RNA (guanine-N7)-methylation // inferred from direct assay /// 0036265 // RNA (guanine-N7)-methylation // inferred from electronic annotation /// 0036265 // RNA (guanine-N7)-methylation // inferred from mutant phenotype /// 0036265 // RNA (guanine-N7)-methylation // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005845 // mRNA cap binding complex // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay 0003723 // RNA binding // inferred from mutant phenotype /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // inferred from direct assay /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // inferred from mutant phenotype /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -42.10 36.02 -4.27 0.00 0.01 -4.47
201294_s_at 201294_s_at N24643 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N24643 /FEA=EST /DB_XREF=gi:1138793 /DB_XREF=est:yx89f11.s1 /CLONE=IMAGE:268941 /UG=Hs.187991 DKFZP564A122 protein /FL=gb:AF106684.1 gb:NM_015626.1 N24643 WD repeat and SOCS box containing 1 WSB1 26118 NM_015626 /// NM_134264 /// NM_134265 /// XM_005257963 /// XR_243778 /// XR_429881 0016310 // phosphorylation // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation -73.00 104.97 -4.26 0.00 0.01 -4.47
213122_at 213122_at AI096375 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI096375 /FEA=EST /DB_XREF=gi:3446286 /DB_XREF=est:qb91e08.x1 /CLONE=IMAGE:1707494 /UG=Hs.173094 Homo sapiens mRNA for KIAA1750 protein, partial cds AI096375 TSPY-like 5 TSPYL5 85453 NM_033512 0006334 // nucleosome assembly // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0071480 // cellular response to gamma radiation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 37.45 71.78 4.26 0.00 0.01 -4.47
203707_at 203707_at NM_005741 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005741.1 /DEF=Homo sapiens zinc finger protein 263 (ZNF263), mRNA. /FEA=mRNA /GEN=ZNF263 /PROD=zinc finger protein 263 /DB_XREF=gi:5032240 /UG=Hs.182528 zinc finger protein 263 /FL=gb:D88827.1 gb:NM_005741.1 NM_005741 long intergenic non-protein coding RNA 921 /// zinc finger protein 263 LINC00921 /// ZNF263 10127 /// 283876 NM_005741 /// NR_033904 /// XM_005255031 /// XM_006720831 /// XM_006720832 /// XM_006720833 /// XM_006720834 /// XM_006720835 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 40.70 82.40 4.26 0.00 0.01 -4.47
210105_s_at 210105_s_at M14333 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M14333.1 /DEF=Homo sapiens c-syn protooncogene mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:181171 /UG=Hs.169370 FYN oncogene related to SRC, FGR, YES /FL=gb:M14333.1 gb:M14676.1 gb:NM_002037.1 M14333 FYN proto-oncogene, Src family tyrosine kinase FYN 2534 NM_001242779 /// NM_002037 /// NM_153047 /// NM_153048 /// XM_005266887 /// XM_005266888 /// XM_005266889 /// XM_005266890 /// XM_005266892 /// XM_006715429 0001764 // neuron migration // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0006816 // calcium ion transport // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007612 // learning // traceable author statement /// 0007631 // feeding behavior // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0031295 // T cell costimulation // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050798 // activated T cell proliferation // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation /// 1900182 // positive regulation of protein localization to nucleus // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from physical interaction /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004715 // non-membrane spanning protein tyrosine kinase activity // non-traceable author statement /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015631 // tubulin binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042608 // T cell receptor binding // inferred from electronic annotation /// 0042609 // CD4 receptor binding // inferred from electronic annotation /// 0042610 // CD8 receptor binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from physical interaction /// 0051428 // peptide hormone receptor binding // inferred from electronic annotation /// 0070851 // growth factor receptor binding // inferred from physical interaction -117.95 525.43 -4.26 0.00 0.01 -4.47
201440_at 201440_at NM_004818 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004818.1 /DEF=Homo sapiens prp28, U5 snRNP 100 kd protein (U5-100K), mRNA. /FEA=mRNA /GEN=U5-100K /PROD=prp28, U5 snRNP 100 kd protein /DB_XREF=gi:4759277 /UG=Hs.168103 prp28, U5 snRNP 100 kd protein /FL=gb:BC002366.1 gb:AF026402.1 gb:NM_004818.1 NM_004818 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 DDX23 9416 NM_004818 /// XM_006719699 0000354 // cis assembly of pre-catalytic spliceosome // inferred by curator /// 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006200 // ATP catabolic process // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005682 // U5 snRNP // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 74.90 73.75 4.26 0.00 0.01 -4.47
209225_x_at 209225_x_at AI653355 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI653355 /FEA=EST /DB_XREF=gi:4737334 /DB_XREF=est:wb45b07.x1 /CLONE=IMAGE:2308597 /UG=Hs.168075 karyopherin (importin) beta 2 /FL=gb:U72069.1 gb:U72395.1 AI653355 transportin 1 TNPO1 3842 NM_002270 /// NM_153188 /// XM_005248500 /// XM_005248501 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -417.93 1025.59 -4.26 0.00 0.01 -4.47
210453_x_at 210453_x_at AL050277 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL050277.1 /DEF=Homo sapiens mRNA; cDNA DKFZp566G013 (from clone DKFZp566G013); complete cds. /FEA=mRNA /GEN=DKFZp566G013 /PROD=hypothetical protein /DB_XREF=gi:4886454 /UG=Hs.107476 ATP synthase, H+ transporting, mitochondrial F1F0, subunit g /FL=gb:AL050277.1 AL050277 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G ATP5L 10632 NM_006476 /// NR_033759 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator 136.25 1219.15 4.26 0.00 0.01 -4.47
205168_at 205168_at NM_006182 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006182.1 /DEF=Homo sapiens discoidin domain receptor family, member 2 (DDR2), mRNA. /FEA=mRNA /GEN=DDR2 /PROD=discoidin domain receptor family, member 2precursor /DB_XREF=gi:5453813 /UG=Hs.71891 discoidin domain receptor family, member 2 /FL=gb:NM_006182.1 NM_006182 discoidin domain receptor tyrosine kinase 2 DDR2 4921 NM_001014796 /// NM_006182 /// XM_005245221 /// XM_006711344 /// XM_006711345 0001503 // ossification // inferred from electronic annotation /// 0003416 // endochondral bone growth // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010715 // regulation of extracellular matrix disassembly // traceable author statement /// 0010763 // positive regulation of fibroblast migration // inferred from sequence or structural similarity /// 0010763 // positive regulation of fibroblast migration // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from sequence or structural similarity /// 0030500 // regulation of bone mineralization // inferred from mutant phenotype /// 0031214 // biomineral tissue development // inferred from sequence or structural similarity /// 0035988 // chondrocyte proliferation // inferred from sequence or structural similarity /// 0035988 // chondrocyte proliferation // traceable author statement /// 0038063 // collagen-activated tyrosine kinase receptor signaling pathway // inferred from direct assay /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from sequence or structural similarity /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0090091 // positive regulation of extracellular matrix disassembly // inferred from sequence or structural similarity 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0038062 // protein tyrosine kinase collagen receptor activity // inferred from direct assay -45.62 56.91 -4.26 0.00 0.01 -4.47
201649_at 201649_at NM_004223 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004223.1 /DEF=Homo sapiens ubiquitin-conjugating enzyme E2L 6 (UBE2L6), mRNA. /FEA=mRNA /GEN=UBE2L6 /PROD=ubiquitin-conjugating enzyme E2L 6 /DB_XREF=gi:4759281 /UG=Hs.169895 ubiquitin-conjugating enzyme E2L 6 /FL=gb:AF031141.1 gb:AF061736.1 gb:NM_004223.1 NM_004223 ubiquitin-conjugating enzyme E2L 6 UBE2L6 9246 NM_004223 /// NM_198183 0006464 // cellular protein modification process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019941 // modification-dependent protein catabolic process // inferred from electronic annotation /// 0032020 // ISG15-protein conjugation // inferred from electronic annotation /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005829 // cytosol // traceable author statement 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0042296 // ISG15 ligase activity // inferred from electronic annotation -49.45 125.40 -4.26 0.00 0.01 -4.47
34868_at 34868_at AB029012 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB029012:Homo sapiens mRNA for KIAA1089 protein, partial cds /cds=(0,2967) /gb=AB029012 /gi=5689514 /ug=Hs.4990 /len=4329 AB029012 SMG5 nonsense mediated mRNA decay factor SMG5 23381 NM_015327 /// XM_005245049 /// XM_006711248 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035303 // regulation of dephosphorylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0051721 // protein phosphatase 2A binding // inferred from direct assay 32.52 73.41 4.25 0.00 0.01 -4.47
208789_at 208789_at BC004295 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC004295.1 /DEF=Homo sapiens, clone IMAGE:3622356, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3622356) /DB_XREF=gi:13279151 /UG=Hs.29759 RNA POLYMERASE I AND TRANSCRIPT RELEASE FACTOR /FL=gb:AF312393.1 BC004295 polymerase I and transcript release factor PTRF 284119 NM_012232 /// XM_005257242 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006353 // DNA-templated transcription, termination // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006361 // transcription initiation from RNA polymerase I promoter // inferred from direct assay /// 0006363 // termination of RNA polymerase I transcription // inferred from direct assay /// 0006363 // termination of RNA polymerase I transcription // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0042134 // rRNA primary transcript binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 364.45 1119.58 4.25 0.00 0.01 -4.47
212830_at 212830_at W68084 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W68084 /FEA=EST /DB_XREF=gi:1376954 /DB_XREF=est:zd42f12.s1 /CLONE=IMAGE:343343 /UG=Hs.5599 EGF-like-domain, multiple 5 W68084 multiple EGF-like-domains 9 MEGF9 1955 NM_001080497 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 63.28 132.16 4.25 0.00 0.01 -4.47
200987_x_at 200987_x_at AA758755 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA758755 /FEA=EST /DB_XREF=gi:2806618 /DB_XREF=est:ah80c08.s1 /CLONE=1321934 /UG=Hs.152978 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) /FL=gb:NM_005789.1 gb:U11292.1 AA758755 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) PSME3 10197 NM_001267045 /// NM_005789 /// NM_176863 /// NR_049772 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010950 // positive regulation of endopeptidase activity // inferred from direct assay /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0061136 // regulation of proteasomal protein catabolic process // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008537 // proteasome activator complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0002039 // p53 binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0061133 // endopeptidase activator activity // inferred from direct assay /// 0097371 // MDM2/MDM4 family protein binding // inferred from direct assay 57.25 292.48 4.25 0.00 0.01 -4.47
202698_x_at 202698_x_at NM_001861 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001861.1 /DEF=Homo sapiens cytochrome c oxidase subunit IV (COX4), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=COX4 /PROD=cytochrome c oxidase subunit IV /DB_XREF=gi:4502980 /UG=Hs.113205 cytochrome c oxidase subunit IV /FL=gb:M21575.1 gb:M34600.1 gb:U90915.1 gb:NM_001861.1 NM_001861 cytochrome c oxidase subunit IV isoform 1 COX4I1 1327 NM_001861 /// XM_005255798 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0007584 // response to nutrient // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -362.88 1499.56 -4.25 0.00 0.01 -4.47
205633_s_at 205633_s_at NM_000688 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000688.1 /DEF=Homo sapiens aminolevulinate, delta-, synthase 1 (ALAS1), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=ALAS1 /PROD=aminolevulinate, delta-, synthase 1 /DB_XREF=gi:4502024 /UG=Hs.78712 aminolevulinate, delta-, synthase 1 /FL=gb:NM_000688.1 NM_000688 aminolevulinate, delta-, synthase 1 ALAS1 211 NM_000688 /// NM_199166 /// XM_005264944 /// XM_005264945 0006778 // porphyrin-containing compound metabolic process // traceable author statement /// 0006782 // protoporphyrinogen IX biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0033014 // tetrapyrrole biosynthetic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0003870 // 5-aminolevulinate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 50.65 117.67 4.25 0.00 0.01 -4.47
205140_at 205140_at NM_003838 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003838.1 /DEF=Homo sapiens fucose-1-phosphate guanylyltransferase (FPGT), mRNA. /FEA=mRNA /GEN=FPGT /PROD=fucose-1-phosphate guanyltransferase /DB_XREF=gi:4503776 /UG=Hs.150926 fucose-1-phosphate guanylyltransferase /FL=gb:AF017445.1 gb:NM_003838.1 NM_003838 fucose-1-phosphate guanylyltransferase FPGT 8790 NM_001199328 /// NM_001199329 /// NM_003838 0006004 // fucose metabolic process // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // traceable author statement /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0031013 // troponin I binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047341 // fucose-1-phosphate guanylyltransferase activity // inferred from electronic annotation 39.07 41.49 4.25 0.00 0.01 -4.47
204123_at 204123_at NM_013975 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013975.1 /DEF=Homo sapiens ligase III, DNA, ATP-dependent (LIG3), transcript variant alpha, mRNA. /FEA=mRNA /GEN=LIG3 /PROD=ligase III, DNA, ATP-dependent, isoform alpha /DB_XREF=gi:7710125 /UG=Hs.100299 ligase III, DNA, ATP-dependent /FL=gb:NM_013975.1 NM_013975 ligase III, DNA, ATP-dependent LIG3 3980 NM_002311 /// NM_013975 /// XM_005257970 /// XM_005257971 /// XM_006721896 0006260 // DNA replication // inferred from electronic annotation /// 0006273 // lagging strand elongation // not recorded /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // traceable author statement /// 0006288 // base-excision repair, DNA ligation // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // not recorded /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // traceable author statement /// 0007283 // spermatogenesis // traceable author statement /// 0033151 // V(D)J recombination // inferred from direct assay /// 0043504 // mitochondrial DNA repair // inferred from electronic annotation /// 0045910 // negative regulation of DNA recombination // inferred from electronic annotation /// 0051103 // DNA ligation involved in DNA repair // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000795 // synaptonemal complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // not recorded /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003909 // DNA ligase activity // inferred from direct assay /// 0003910 // DNA ligase (ATP) activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 38.50 33.15 4.24 0.00 0.01 -4.47
212470_at 212470_at AB011088 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011088.1 /DEF=Homo sapiens mRNA for KIAA0516 protein, partial cds. /FEA=mRNA /GEN=KIAA0516 /PROD=KIAA0516 protein /DB_XREF=gi:3043555 /UG=Hs.129872 sperm associated antigen 9 AB011088 sperm associated antigen 9 SPAG9 9043 NM_001130527 /// NM_001130528 /// NM_001251971 /// NM_003971 /// NM_172345 /// XM_005257767 /// XM_005257768 /// XM_005257769 /// XM_005257770 /// XM_005257771 /// XM_005257772 /// XM_005257773 /// XM_005257774 /// XM_006722163 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay /// 0042692 // muscle cell differentiation // traceable author statement /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0090074 // negative regulation of protein homodimerization activity // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016021 // integral component of membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008432 // JUN kinase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0048273 // mitogen-activated protein kinase p38 binding // inferred from electronic annotation -116.73 260.34 -4.24 0.00 0.01 -4.47
218139_s_at 218139_s_at NM_018229 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018229.1 /DEF=Homo sapiens hypothetical protein FLJ10813 (FLJ10813), mRNA. /FEA=mRNA /GEN=FLJ10813 /PROD=hypothetical protein FLJ10813 /DB_XREF=gi:8922687 /UG=Hs.106210 hypothetical protein FLJ10813 /FL=gb:AL136685.1 gb:NM_018229.1 NM_018229 adaptor-related protein complex 5, mu 1 subunit AP5M1 55745 NM_018229 /// NR_026895 /// XM_006720196 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016197 // endosomal transport // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030119 // AP-type membrane coat adaptor complex // inferred from direct assay /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 42.80 103.28 4.24 0.00 0.01 -4.47
203344_s_at 203344_s_at NM_002894 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002894.1 /DEF=Homo sapiens retinoblastoma-binding protein 8 (RBBP8), mRNA. /FEA=mRNA /GEN=RBBP8 /PROD=retinoblastoma-binding protein 8 /DB_XREF=gi:4506440 /UG=Hs.29287 retinoblastoma-binding protein 8 /FL=gb:AF043431.1 gb:NM_002894.1 NM_002894 retinoblastoma binding protein 8 RBBP8 5932 NM_002894 /// NM_203291 /// NM_203292 /// XM_005258325 /// XM_005258326 /// XM_006722519 /// XM_006722520 /// XM_006722521 /// XM_006722522 0000075 // cell cycle checkpoint // traceable author statement /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000724 // double-strand break repair via homologous recombination // inferred from direct assay /// 0000737 // DNA catabolic process, endonucleolytic // inferred from mutant phenotype /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0010792 // DNA double-strand break processing involved in repair via single-strand annealing // inferred from mutant phenotype /// 0031572 // G2 DNA damage checkpoint // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0000014 // single-stranded DNA endodeoxyribonuclease activity // inferred from mutant phenotype /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from direct assay /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation -40.85 102.12 -4.24 0.00 0.01 -4.47
201750_s_at 201750_s_at NM_001397 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001397.1 /DEF=Homo sapiens endothelin converting enzyme 1 (ECE1), mRNA. /FEA=mRNA /GEN=ECE1 /PROD=endothelin converting enzyme 1 /DB_XREF=gi:4503442 /UG=Hs.288203 endothelin converting enzyme 1 /FL=gb:NM_001397.1 gb:AB031742.1 gb:D49471.1 NM_001397 endothelin converting enzyme 1 ECE1 1889 NM_001113347 /// NM_001113348 /// NM_001113349 /// NM_001397 /// XM_006710398 0001921 // positive regulation of receptor recycling // inferred from mutant phenotype /// 0003100 // regulation of systemic arterial blood pressure by endothelin // inferred by curator /// 0006508 // proteolysis // inferred from electronic annotation /// 0007507 // heart development // inferred from mutant phenotype /// 0010814 // substance P catabolic process // inferred from direct assay /// 0010815 // bradykinin catabolic process // inferred from direct assay /// 0010816 // calcitonin catabolic process // inferred from direct assay /// 0016485 // protein processing // inferred from direct assay /// 0016486 // peptide hormone processing // inferred from direct assay /// 0019229 // regulation of vasoconstriction // inferred by curator /// 0034959 // endothelin maturation // inferred from direct assay /// 0042447 // hormone catabolic process // inferred from direct assay /// 0042733 // embryonic digit morphogenesis // inferred from mutant phenotype /// 0043583 // ear development // inferred from mutant phenotype /// 0060037 // pharyngeal system development // inferred from electronic annotation 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0031302 // intrinsic component of endosome membrane // traceable author statement /// 0031982 // vesicle // inferred from sequence or structural similarity /// 0033093 // Weibel-Palade body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -73.77 122.01 -4.24 0.00 0.01 -4.47
201734_at 201734_at AI760629 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI760629 /FEA=EST /DB_XREF=gi:5176296 /DB_XREF=est:wi66e06.x1 /CLONE=IMAGE:2398306 /UG=Hs.174139 chloride channel 3 /FL=gb:AF029346.1 gb:NM_001829.1 gb:AF172729.1 AI760629 chloride channel, voltage-sensitive 3 CLCN3 1182 NM_001243372 /// NM_001243374 /// NM_001829 /// NM_173872 /// XM_005262726 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0006885 // regulation of pH // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0034765 // regulation of ion transmembrane transport // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0044070 // regulation of anion transport // traceable author statement /// 0048388 // endosomal lumen acidification // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 1902476 // chloride transmembrane transport // inferred from electronic annotation /// 1902476 // chloride transmembrane transport // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // non-traceable author statement /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030554 // adenyl nucleotide binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // non-traceable author statement /// 0046982 // protein heterodimerization activity // inferred from direct assay 102.78 333.64 4.24 0.00 0.01 -4.47
202916_s_at 202916_s_at NM_014864 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014864.1 /DEF=Homo sapiens KIAA0475 gene product (KIAA0475), mRNA. /FEA=mRNA /GEN=KIAA0475 /PROD=KIAA0475 gene product /DB_XREF=gi:7662149 /UG=Hs.5737 KIAA0475 gene product /FL=gb:AB007944.1 gb:NM_014864.1 NM_014864 family with sequence similarity 20, member B FAM20B 9917 NM_014864 0016310 // phosphorylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from direct assay 46.65 51.65 4.24 0.00 0.01 -4.47
211383_s_at 211383_s_at AL136827 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136827.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434F2427 (from clone DKFZp434F2427); complete cds. /FEA=mRNA /GEN=DKFZp434F2427 /PROD=hypothetical protein /DB_XREF=gi:6807664 /UG=Hs.27207 KIAA0982 protein /FL=gb:AL136827.1 AL136827 WD repeat domain 37 WDR37 22884 NM_014023 0005515 // protein binding // inferred from electronic annotation 73.60 154.50 4.24 0.00 0.01 -4.47
204072_s_at 204072_s_at NM_023037 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023037.1 /DEF=Homo sapiens putative gene product (13CDNA73), mRNA. /FEA=mRNA /GEN=13CDNA73 /PROD=putative gene product /DB_XREF=gi:12957487 /UG=Hs.181304 putative gene product /FL=gb:NM_023037.1 NM_023037 furry homolog (Drosophila) FRY 10129 NM_023037 /// XM_006719749 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 52.60 99.05 4.24 0.00 0.01 -4.47
218698_at 218698_at NM_015957 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015957.1 /DEF=Homo sapiens CGI-29 protein (LOC51074), mRNA. /FEA=mRNA /GEN=LOC51074 /PROD=CGI-29 protein /DB_XREF=gi:7705723 /UG=Hs.104058 CGI-29 protein /FL=gb:AF132963.1 gb:NM_015957.1 NM_015957 APAF1 interacting protein APIP 51074 NM_015957 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006595 // polyamine metabolic process // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0019284 // L-methionine biosynthetic process from S-adenosylmethionine // inferred from electronic annotation /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from mutant phenotype /// 0019509 // L-methionine salvage from methylthioadenosine // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046570 // methylthioribulose 1-phosphate dehydratase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 54.58 122.99 4.24 0.00 0.01 -4.47
220494_s_at 220494_s_at NM_018678 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018678.1 /DEF=Homo sapiens lipopolysaccharide specific response-68 protein (LSR68), mRNA. /FEA=mRNA /GEN=LSR68 /PROD=lipopolysaccharide specific response-68 protein /DB_XREF=gi:8923914 /UG=Hs.103189 lipopolysaccharide specific response-68 protein /FL=gb:AF147723.1 gb:NM_018678.1 NM_018678 -155.17 253.04 -4.23 0.00 0.01 -4.47
214737_x_at 214737_x_at AV725195 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV725195 /FEA=EST /DB_XREF=gi:10830339 /DB_XREF=est:AV725195 /CLONE=HTCBCH08 /UG=Hs.182447 heterogeneous nuclear ribonucleoprotein C (C1C2) AV725195 heterogeneous nuclear ribonucleoprotein C (C1/C2) HNRNPC 3183 NM_001077442 /// NM_001077443 /// NM_004500 /// NM_031314 /// XM_006720124 /// XM_006720125 /// XM_006720126 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045120 // pronucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -208.17 970.34 -4.23 0.00 0.01 -4.47
209683_at 209683_at AA243659 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA243659 /FEA=EST /DB_XREF=gi:1874478 /DB_XREF=est:zr68c06.s1 /CLONE=IMAGE:668554 /UG=Hs.4863 hypothetical protein DKFZp566A1524 /FL=gb:AL136704.1 AA243659 family with sequence similarity 49, member A FAM49A 81553 NM_030797 /// XM_005262630 /// XM_006712108 0005622 // intracellular // inferred from direct assay 35.90 43.08 4.23 0.00 0.01 -4.47
204715_at 204715_at NM_015368 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015368.1 /DEF=Homo sapiens pannexin 1 (PANX1), mRNA. /FEA=mRNA /GEN=PANX1 /PROD=pannexin 1 /DB_XREF=gi:7662507 /UG=Hs.30985 pannexin 1 /FL=gb:AF093239.1 gb:NM_015368.1 NM_015368 pannexin 1 PANX1 24145 NM_015368 /// XM_005273863 0002931 // response to ischemia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0033198 // response to ATP // inferred from electronic annotation /// 0034214 // protein hexamerization // inferred from direct assay /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050717 // positive regulation of interleukin-1 alpha secretion // inferred from electronic annotation /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005921 // gap junction // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032059 // bleb // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0002020 // protease binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005243 // gap junction channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0015267 // channel activity // inferred from electronic annotation /// 0022840 // leak channel activity // inferred from mutant phenotype /// 0044325 // ion channel binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation /// 0055077 // gap junction hemi-channel activity // inferred from direct assay /// 0097110 // scaffold protein binding // inferred from electronic annotation -77.72 107.14 -4.23 0.00 0.01 -4.47
203927_at 203927_at NM_004556 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004556.1 /DEF=Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon (NFKBIE), mRNA. /FEA=mRNA /GEN=NFKBIE /PROD=nuclear factor of kappa light polypeptide geneenhancer in B-cells inhibitor, epsilon /DB_XREF=gi:4758805 /UG=Hs.91640 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon /FL=gb:U91616.1 gb:NM_004556.1 NM_004556 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon NFKBIE 4794 NM_004556 0042942 // D-serine transport // inferred from electronic annotation /// 0042994 // cytoplasmic sequestering of transcription factor // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -38.75 83.50 -4.23 0.00 0.01 -4.47
208319_s_at 208319_s_at NM_006743 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006743.1 /DEF=Homo sapiens RNA binding motif protein 3 (RBM3), mRNA. /FEA=mRNA /GEN=RBM3 /PROD=RNA binding motif protein 3 /DB_XREF=gi:5803136 /UG=Hs.301404 RNA binding motif protein 3 /FL=gb:NM_006743.1 gb:U28686.1 NM_006743 RNA binding motif (RNP1, RRM) protein 3 RBM3 5935 NM_001017430 /// NM_001017431 /// NM_006743 0006396 // RNA processing // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0015934 // large ribosomal subunit // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043023 // ribosomal large subunit binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 111.92 456.64 4.23 0.00 0.01 -4.47
212474_at 212474_at D87682 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D87682.1 /DEF=Human mRNA for KIAA0241 gene, partial cds. /FEA=mRNA /GEN=KIAA0241 /DB_XREF=gi:1663699 /UG=Hs.150275 KIAA0241 protein D87682 AVL9 homolog (S. cerevisiase) AVL9 23080 NM_015060 /// XM_005249668 /// XM_005249669 /// XM_005249670 /// XM_005249671 0016477 // cell migration // inferred from direct assay 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay 56.60 88.10 4.22 0.00 0.01 -4.47
218694_at 218694_at NM_016608 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016608.1 /DEF=Homo sapiens ALEX1 protein (LOC51309), mRNA. /FEA=mRNA /GEN=LOC51309 /PROD=ALEX1 protein /DB_XREF=gi:7706142 /UG=Hs.9728 ALEX1 protein /FL=gb:AF248963.1 gb:BC002691.1 gb:AB039670.1 gb:NM_016608.1 NM_016608 armadillo repeat containing, X-linked 1 ARMCX1 51309 NM_016608 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 60.25 130.45 4.22 0.00 0.01 -4.47
218360_at 218360_at NM_020673 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020673.1 /DEF=Homo sapiens RAB22A, member RAS oncogene family (RAB22A), mRNA. /FEA=mRNA /GEN=RAB22A /PROD=RAB22A, member RAS oncogene family /DB_XREF=gi:10190713 /UG=Hs.288968 RAB22A, member RAS oncogene family /FL=gb:NM_020673.1 gb:AF091034.2 NM_020673 RAB22A, member RAS oncogene family RAB22A 57403 NM_020673 /// XM_005260469 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay -78.18 165.14 -4.22 0.00 0.01 -4.47
201303_at 201303_at NM_014740 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014740.1 /DEF=Homo sapiens KIAA0111 gene product (KIAA0111), mRNA. /FEA=mRNA /GEN=KIAA0111 /PROD=KIAA0111 gene product /DB_XREF=gi:7661919 /UG=Hs.79768 KIAA0111 gene product /FL=gb:BC003662.1 gb:BC004386.1 gb:D21853.1 gb:NM_014740.1 NM_014740 eukaryotic translation initiation factor 4A3 EIF4A3 9775 NM_014740 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0017148 // negative regulation of translation // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from mutant phenotype /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0004004 // ATP-dependent RNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008143 // poly(A) binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 108.90 510.62 4.22 0.00 0.01 -4.47
203359_s_at 203359_s_at AL525412 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL525412 /FEA=EST /DB_XREF=gi:12788905 /DB_XREF=est:AL525412 /CLONE=CS0DC011YJ12 (5 prime) /UG=Hs.78221 c-myc binding protein /FL=gb:D50692.1 gb:AB007191.2 gb:NM_012333.2 AL525412 GJA9-MYCBP readthrough /// MYC binding protein GJA9-MYCBP /// MYCBP 26292 /// 100527950 NM_012333 /// NR_037632 /// NR_037633 /// NR_037634 /// NR_037635 /// NR_037636 /// NR_037637 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0007154 // cell communication // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 40.73 66.19 4.22 0.00 0.01 -4.47
201254_x_at 201254_x_at NM_001010 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001010.1 /DEF=Homo sapiens ribosomal protein S6 (RPS6), mRNA. /FEA=mRNA /GEN=RPS6 /PROD=ribosomal protein S6 /DB_XREF=gi:4506730 /UG=Hs.241507 ribosomal protein S6 /FL=gb:M20020.1 gb:NM_001010.1 NM_001010 ribosomal protein S6 RPS6 6194 NM_001010 0000028 // ribosomal small subunit assembly // inferred from electronic annotation /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0031929 // TOR signaling // inferred from direct assay /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -912.05 4285.52 -4.22 0.00 0.01 -4.47
213372_at 213372_at AW173157 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW173157 /FEA=EST /DB_XREF=gi:6439105 /DB_XREF=est:xj84a12.x1 /CLONE=IMAGE:2663902 /UG=Hs.26860 Homo sapiens mRNA; cDNA DKFZp586G1922 (from clone DKFZp586G1922) AW173157 progestin and adipoQ receptor family member III PAQR3 152559 NM_001040202 /// NM_177453 /// XM_005262769 /// XM_005262770 /// XM_006714104 /// XM_006714105 /// XM_006714106 /// XM_006714107 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030500 // regulation of bone mineralization // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034067 // protein localization to Golgi apparatus // inferred from physical interaction /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019208 // phosphatase regulator activity // inferred from electronic annotation 38.53 50.51 4.22 0.00 0.01 -4.47
216952_s_at 216952_s_at M94363 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:M94363 /DEF=Human lamin B2 (LAMB2) gene and ppv1 gene sequence /FEA=mRNA /DB_XREF=gi:186920 /UG=Hs.76084 lamin B2 M94363 lamin B2 LMNB2 84823 NM_032737 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005638 // lamin filament // inferred from electronic annotation /// 0005652 // nuclear lamina // non-traceable author statement /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 58.95 173.57 4.21 0.00 0.01 -4.47
212518_at 212518_at AB011161 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011161.1 /DEF=Homo sapiens mRNA for KIAA0589 protein, partial cds. /FEA=mRNA /GEN=KIAA0589 /PROD=KIAA0589 protein /DB_XREF=gi:3043701 /UG=Hs.275182 phosphatidylinositol-4-phosphate 5-kinase, type I, gamma AB011161 phosphatidylinositol-4-phosphate 5-kinase, type I, gamma PIP5K1C 23396 NM_001195733 /// NM_012398 /// XM_005259523 /// XM_006722712 /// XR_430133 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006887 // exocytosis // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007016 // cytoskeletal anchoring at plasma membrane // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030593 // neutrophil chemotaxis // traceable author statement /// 0034333 // adherens junction assembly // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // traceable author statement /// 0070527 // platelet aggregation // inferred from electronic annotation /// 0072583 // clathrin-mediated endocytosis // traceable author statement 0001891 // phagocytic cup // inferred from electronic annotation /// 0001931 // uropod // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005925 // focal adhesion // traceable author statement /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 1990147 // talin binding // inferred from electronic annotation 58.13 160.01 4.21 0.00 0.01 -4.47
208724_s_at 208724_s_at BC000905 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000905.1 /DEF=Homo sapiens, RAB1, member RAS oncogene family, clone MGC:5233, mRNA, complete cds. /FEA=mRNA /PROD=RAB1, member RAS oncogene family /DB_XREF=gi:12654174 /UG=Hs.3642 RAB1, member RAS oncogene family /FL=gb:BC000905.1 BC000905 RAB1A, member RAS oncogene family RAB1A 5861 NM_004161 /// NM_015543 /// XM_005264468 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016477 // cell migration // inferred from mutant phenotype /// 0030252 // growth hormone secretion // inferred from mutant phenotype /// 0042742 // defense response to bacterium // inferred from mutant phenotype /// 0047496 // vesicle transport along microtubule // inferred from mutant phenotype /// 0072606 // interleukin-8 secretion // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 317.95 1635.33 4.21 0.00 0.01 -4.47
221896_s_at 221896_s_at BE739519 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE739519 /FEA=EST /DB_XREF=gi:10153511 /DB_XREF=est:601556450T1 /CLONE=IMAGE:3826141 /UG=Hs.7917 DKFZP564K247 protein BE739519 HIG1 hypoxia inducible domain family, member 1A HIGD1A 25994 NM_001099668 /// NM_001099669 /// NM_014056 0006950 // response to stress // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 104.40 409.18 4.21 0.00 0.01 -4.47
219182_at 219182_at NM_024533 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024533.1 /DEF=Homo sapiens hypothetical protein FLJ22167 (FLJ22167), mRNA. /FEA=mRNA /GEN=FLJ22167 /PROD=hypothetical protein FLJ22167 /DB_XREF=gi:13375685 /UG=Hs.6853 hypothetical protein FLJ22167 /FL=gb:NM_024533.1 NM_024533 transmembrane protein 231 TMEM231 79583 NM_001077416 /// NM_001077418 /// NR_074083 0007224 // smoothened signaling pathway // inferred from sequence or structural similarity /// 0030030 // cell projection organization // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0035869 // ciliary transition zone // inferred from sequence or structural similarity /// 0036038 // TCTN-B9D complex // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation /// 0060170 // ciliary membrane // inferred from sequence or structural similarity -35.23 93.59 -4.21 0.00 0.01 -4.47
217200_x_at 217200_x_at U06715 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U06715.1 /DEF=Human cytochrome B561, HCYTO B561, mRNA, partial cds. /FEA=mRNA /GEN=B561 /PROD=HCYTO B561 /DB_XREF=gi:476590 /UG=Hs.153028 cytochrome b-561 U06715 cytochrome b561 CYB561 1534 NM_001017916 /// NM_001017917 /// NM_001017918 /// NM_001915 /// XM_005257090 /// XM_005257091 /// XM_005257092 /// XM_006721727 0022900 // electron transport chain // non-traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // non-traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0000293 // ferric-chelate reductase activity // inferred from sequence or structural similarity /// 0022865 // transmembrane electron transfer carrier // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 47.57 171.54 4.21 0.00 0.01 -4.47
217996_at 217996_at AA576961 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA576961 /FEA=EST /DB_XREF=gi:2354435 /DB_XREF=est:nm82d08.s1 /CLONE=IMAGE:1074735 /UG=Hs.82101 pleckstrin homology-like domain, family A, member 1 /FL=gb:NM_007350.1 AA576961 pleckstrin homology-like domain, family A, member 1 PHLDA1 22822 NM_007350 0006915 // apoptotic process // inferred from electronic annotation /// 0021879 // forebrain neuron differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0045210 // FasL biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation -131.43 360.99 -4.21 0.00 0.01 -4.47
216125_s_at 216125_s_at AF064606 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF064606.1 /DEF=Homo sapiens KB07 protein mRNA, partial cds. /FEA=mRNA /PROD=KB07 protein /DB_XREF=gi:3152665 /UG=Hs.306242 Homo sapiens KB07 protein mRNA, partial cds AF064606 RAN binding protein 9 RANBP9 10048 NM_005493 /// XM_006714945 0006461 // protein complex assembly // traceable author statement /// 0007020 // microtubule nucleation // non-traceable author statement /// 0007411 // axon guidance // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005875 // microtubule associated complex // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction -48.95 104.53 -4.21 0.00 0.01 -4.47
217867_x_at 217867_x_at NM_012105 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012105.1 /DEF=Homo sapiens beta-site APP-cleaving enzyme 2 (BACE2), mRNA. /FEA=mRNA /GEN=BACE2 /PROD=beta-site APP-cleaving enzyme 2 /DB_XREF=gi:6912263 /UG=Hs.271411 beta-site APP-cleaving enzyme 2 /FL=gb:AF117892.1 gb:AF050171.1 gb:AF200192.1 gb:AF200342.1 gb:AF204944.1 gb:AF178532.1 gb:NM_012105.1 NM_012105 beta-site APP-cleaving enzyme 2 BACE2 25825 NM_012105 /// NM_138991 /// NM_138992 0006508 // proteolysis // non-traceable author statement /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0016486 // peptide hormone processing // non-traceable author statement /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // inferred from mutant phenotype 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0004190 // aspartic-type endopeptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -118.18 357.16 -4.21 0.00 0.01 -4.47
213164_at 213164_at AI867198 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI867198 /FEA=EST /DB_XREF=gi:5540214 /DB_XREF=est:wa01c11.x1 /CLONE=IMAGE:2296820 /UG=Hs.324787 solute carrier family 5 (inositol transporters), member 3 /FL=gb:NM_006933.1 AI867198 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 SLC5A3 6526 NM_006933 0006020 // inositol metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0015798 // myo-inositol transport // traceable author statement /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0015935 // small ribosomal subunit // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005367 // myo-inositol:sodium symporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 49.22 45.21 4.21 0.00 0.01 -4.47
217877_s_at 217877_s_at NM_021639 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021639.1 /DEF=Homo sapiens hypothetical protein SP192 (SP192), mRNA. /FEA=mRNA /GEN=SP192 /PROD=hypothetical protein SP192 /DB_XREF=gi:11056015 /UG=Hs.169854 hypothetical protein SP192 /FL=gb:NM_021639.1 NM_021639 GC-rich promoter binding protein 1-like 1 GPBP1L1 60313 NM_021639 /// XM_005271094 /// XM_005271095 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation -63.62 173.19 -4.20 0.00 0.01 -4.47
218123_at 218123_at NM_017835 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017835.1 /DEF=Homo sapiens chromosome 21 open reading frame 59 (C21ORF59), mRNA. /FEA=mRNA /GEN=C21ORF59 /PROD=hypothetical protein FLJ20467 /DB_XREF=gi:8923436 /UG=Hs.5811 chromosome 21 open reading frame 59 /FL=gb:NM_021254.1 gb:BC000709.1 gb:NM_017835.1 gb:AF282851.1 NM_017835 chromosome 21 open reading frame 59 C21orf59 56683 NM_017835 /// NM_021254 /// NR_036552 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 41.00 131.32 4.20 0.00 0.01 -4.47
211612_s_at 211612_s_at U62858 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U62858.1 /DEF=Human interleukin-13 receptor mRNA, complete cds. /FEA=mRNA /PROD=interleukin-13 receptor /DB_XREF=gi:1695875 /FL=gb:U62858.1 U62858 interleukin 13 receptor, alpha 1 IL13RA1 3597 NM_001560 /// XM_005262411 0002639 // positive regulation of immunoglobulin production // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0035772 // interleukin-13-mediated signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005898 // interleukin-13 receptor complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016515 // interleukin-13 receptor activity // inferred from electronic annotation -48.10 149.32 -4.20 0.00 0.01 -4.47
205120_s_at 205120_s_at U29586 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U29586.1 /DEF=Human beta-sarcoglycan dystrophin-associated glycoprotein mRNA, complete cds. /FEA=mRNA /PROD=dystrophin-associated glycoprotein /DB_XREF=gi:1794188 /UG=Hs.77501 sarcoglycan, beta (43kD dystrophin-associated glycoprotein) /FL=gb:U31116.1 gb:U29586.1 gb:NM_000232.1 U29586 sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) SGCB 6443 NM_000232 /// XM_006714046 /// XM_006714047 /// XM_006714048 /// XM_006714049 0007517 // muscle organ development // inferred from electronic annotation /// 0035051 // cardiocyte differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016010 // dystrophin-associated glycoprotein complex // inferred from direct assay /// 0016012 // sarcoglycan complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation -55.03 187.99 -4.20 0.00 0.01 -4.47
205434_s_at 205434_s_at AW451954 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW451954 /FEA=EST /DB_XREF=gi:6992730 /DB_XREF=est:UI-H-BI3-alt-h-06-0-UI.s1 /CLONE=IMAGE:3068771 /UG=Hs.135941 KIAA1048 protein /FL=gb:AB028971.1 gb:NM_014911.1 AW451954 AP2 associated kinase 1 AAK1 22848 NM_014911 0006468 // protein phosphorylation // inferred from direct assay /// 0006897 // endocytosis // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from direct assay /// 0045747 // positive regulation of Notch signaling pathway // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from direct assay /// 2000369 // regulation of clathrin-mediated endocytosis // inferred from direct assay /// 2000369 // regulation of clathrin-mediated endocytosis // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019897 // extrinsic component of plasma membrane // inferred from sequence or structural similarity /// 0030136 // clathrin-coated vesicle // inferred from sequence or structural similarity /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0043195 // terminal bouton // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005112 // Notch binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0035612 // AP-2 adaptor complex binding // inferred from direct assay 60.82 134.46 4.20 0.00 0.01 -4.47
219016_at 219016_at NM_021826 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021826.1 /DEF=Homo sapiens hypothetical protein FLJ13149 (FLJ13149), mRNA. /FEA=mRNA /GEN=FLJ13149 /PROD=hypothetical protein FLJ13149 /DB_XREF=gi:11141902 /UG=Hs.112188 hypothetical protein FLJ13149 /FL=gb:NM_021826.1 NM_021826 FAST kinase domains 5 FASTKD5 60493 NM_021826 0006468 // protein phosphorylation // inferred from electronic annotation /// 0045333 // cellular respiration // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from direct assay 0004672 // protein kinase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 43.48 93.01 4.20 0.00 0.01 -4.47
202723_s_at 202723_s_at AW117498 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW117498 /FEA=EST /DB_XREF=gi:6086082 /DB_XREF=est:xd92e10.x1 /CLONE=IMAGE:2605098 /UG=Hs.170133 forkhead box O1A (rhabdomyosarcoma) /FL=gb:AF032885.1 gb:U02310.1 gb:NM_002015.2 AW117498 forkhead box O1 FOXO1 2308 NM_002015 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001659 // temperature homeostasis // inferred from sequence or structural similarity /// 0001678 // cellular glucose homeostasis // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006473 // protein acetylation // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from sequence or structural similarity /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007389 // pattern specification process // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009267 // cellular response to starvation // inferred from direct assay /// 0009267 // cellular response to starvation // inferred from sequence or structural similarity /// 0009790 // embryo development // /// 0009888 // tissue development // not recorded /// 0010508 // positive regulation of autophagy // inferred from mutant phenotype /// 0031018 // endocrine pancreas development // traceable author statement /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0032873 // negative regulation of stress-activated MAPK cascade // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from sequence or structural similarity /// 0035947 // regulation of gluconeogenesis by regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045722 // positive regulation of gluconeogenesis // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0070417 // cellular response to cold // inferred from sequence or structural similarity /// 0071455 // cellular response to hyperoxia // inferred from direct assay /// 0071732 // cellular response to nitric oxide // inferred from sequence or structural similarity /// 2000505 // regulation of energy homeostasis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008301 // DNA binding, bending // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0051721 // protein phosphatase 2A binding // inferred from sequence or structural similarity -82.12 213.59 -4.20 0.00 0.01 -4.47
202391_at 202391_at NM_006317 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006317.1 /DEF=Homo sapiens brain acid-soluble protein 1 (BASP1), mRNA. /FEA=mRNA /GEN=BASP1 /PROD=brain acid-soluble protein 1 /DB_XREF=gi:5453749 /UG=Hs.79516 brain abundant, membrane attached signal protein 1 /FL=gb:BC000518.1 gb:AF039656.1 gb:NM_006317.1 NM_006317 brain abundant, membrane attached signal protein 1 BASP1 10409 NM_001271606 /// NM_006317 0007356 // thorax and anterior abdomen determination // inferred from sequence or structural similarity /// 0008406 // gonad development // inferred from sequence or structural similarity /// 0021762 // substantia nigra development // inferred from expression pattern /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0060231 // mesenchymal to epithelial transition // inferred from sequence or structural similarity /// 0060421 // positive regulation of heart growth // inferred from sequence or structural similarity /// 0060539 // diaphragm development // inferred from sequence or structural similarity /// 0072075 // metanephric mesenchyme development // inferred from sequence or structural similarity /// 0072112 // glomerular visceral epithelial cell differentiation // inferred from sequence or structural similarity /// 2001076 // positive regulation of metanephric ureteric bud development // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from sequence or structural similarity -360.17 1363.39 -4.20 0.00 0.01 -4.47
220956_s_at 220956_s_at NM_017555 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017555.1 /DEF=Homo sapiens hypothetical protein DKFZp434E026 (DKFZp434E026), mRNA. /FEA=mRNA /GEN=DKFZp434E026 /PROD=hypothetical protein DKFZp434E026 /DB_XREF=gi:8922129 /UG=Hs.9659 hypothetical protein DKFZp434E026 /FL=gb:NM_017555.1 NM_017555 egl-9 family hypoxia-inducible factor 2 /// RAB4B-EGLN2 readthrough (NMD candidate) EGLN2 /// RAB4B-EGLN2 112398 /// 100529264 NM_017555 /// NM_053046 /// NM_080732 /// NR_037791 0001558 // regulation of cell growth // non-traceable author statement /// 0001666 // response to hypoxia // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from direct assay /// 0019511 // peptidyl-proline hydroxylation // inferred from electronic annotation /// 0030520 // intracellular estrogen receptor signaling pathway // non-traceable author statement /// 0043523 // regulation of neuron apoptotic process // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // inferred from direct assay /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0046323 // glucose import // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032593 // insulin-responsive compartment // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0055037 // recycling endosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from direct assay /// 0019826 // oxygen sensor activity // inferred from direct assay /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0031543 // peptidyl-proline dioxygenase activity // inferred from electronic annotation /// 0031545 // peptidyl-proline 4-dioxygenase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 91.65 138.03 4.19 0.00 0.01 -4.47
209022_at 209022_at AK026678 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026678.1 /DEF=Homo sapiens cDNA: FLJ23025 fis, clone LNG01702, highly similar to HUMAUTOND Human autonomously replicating sequence (ARS) mRNA. /FEA=mRNA /DB_XREF=gi:10439584 /UG=Hs.8217 stromal antigen 2 /FL=gb:BC001765.1 AK026678 stromal antigen 2 STAG2 10735 NM_001042749 /// NM_001042750 /// NM_001042751 /// NM_001282418 /// NM_006603 /// XM_005262357 /// XM_005262358 /// XM_005262359 /// XM_005262360 /// XM_005262361 /// XM_006724727 /// XM_006724728 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // inferred from mutant phenotype /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0032876 // negative regulation of DNA endoreduplication // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -86.80 358.40 -4.19 0.00 0.01 -4.47
209421_at 209421_at U04045 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U04045.1 /DEF=Human (hMSH2) mRNA, complete cds. /FEA=mRNA /GEN=hMSH2 /DB_XREF=gi:432997 /UG=Hs.78934 mutS (E. coli) homolog 2 (colon cancer, nonpolyposis type 1) /FL=gb:L47583.1 gb:L47582.1 gb:L47581.1 gb:U04045.1 gb:U03911.1 gb:NM_000251.1 U04045 mutS homolog 2 MSH2 4436 NM_000251 /// NM_001258281 /// XM_005264332 0000710 // meiotic mismatch repair // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0002204 // somatic recombination of immunoglobulin genes involved in immune response // inferred from electronic annotation /// 0006119 // oxidative phosphorylation // inferred from electronic annotation /// 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from direct assay /// 0006298 // mismatch repair // inferred from direct assay /// 0006298 // mismatch repair // inferred from genetic interaction /// 0006301 // postreplication repair // inferred from direct assay /// 0006302 // double-strand break repair // not recorded /// 0006311 // meiotic gene conversion // not recorded /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0008584 // male gonad development // inferred from sequence or structural similarity /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0010165 // response to X-ray // not recorded /// 0010165 // response to X-ray // inferred from sequence or structural similarity /// 0010224 // response to UV-B // not recorded /// 0010224 // response to UV-B // inferred from sequence or structural similarity /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016447 // somatic recombination of immunoglobulin gene segments // inferred from sequence or structural similarity /// 0019724 // B cell mediated immunity // inferred from sequence or structural similarity /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0031573 // intra-S DNA damage checkpoint // not recorded /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // not recorded /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from sequence or structural similarity /// 0043570 // maintenance of DNA repeat elements // inferred from mutant phenotype /// 0045128 // negative regulation of reciprocal meiotic recombination // not recorded /// 0045190 // isotype switching // not recorded /// 0045190 // isotype switching // inferred from sequence or structural similarity /// 0045910 // negative regulation of DNA recombination // inferred from direct assay /// 0045910 // negative regulation of DNA recombination // inferred from sequence or structural similarity /// 0051096 // positive regulation of helicase activity // inferred from direct assay 0000228 // nuclear chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0032301 // MutSalpha complex // inferred from direct assay /// 0032302 // MutSbeta complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000400 // four-way junction DNA binding // inferred from direct assay /// 0000403 // Y-form DNA binding // not recorded /// 0000404 // heteroduplex DNA loop binding // not recorded /// 0000406 // double-strand/single-strand DNA junction binding // not recorded /// 0003677 // DNA binding // inferred from direct assay /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from direct assay /// 0019237 // centromeric DNA binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030983 // mismatched DNA binding // inferred from direct assay /// 0032137 // guanine/thymine mispair binding // inferred from direct assay /// 0032137 // guanine/thymine mispair binding // inferred from mutant phenotype /// 0032139 // dinucleotide insertion or deletion binding // inferred from direct assay /// 0032142 // single guanine insertion binding // inferred from direct assay /// 0032143 // single thymine insertion binding // inferred from direct assay /// 0032181 // dinucleotide repeat insertion binding // inferred from direct assay /// 0032357 // oxidized purine DNA binding // inferred from direct assay /// 0032405 // MutLalpha complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043531 // ADP binding // inferred from direct assay 49.85 63.88 4.19 0.00 0.01 -4.47
202381_at 202381_at NM_003816 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003816.1 /DEF=Homo sapiens a disintegrin and metalloproteinase domain 9 (meltrin gamma) (ADAM9), mRNA. /FEA=mRNA /GEN=ADAM9 /PROD=a disintegrin and metalloproteinase domain 9preproprotein /DB_XREF=gi:4501914 /UG=Hs.2442 a disintegrin and metalloproteinase domain 9 (meltrin gamma) /FL=gb:U41766.1 gb:NM_003816.1 NM_003816 ADAM metallopeptidase domain 9 ADAM9 8754 NM_001005845 /// NM_003816 /// NR_027638 /// NR_027639 /// NR_027878 0000186 // activation of MAPKK activity // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006509 // membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007160 // cell-matrix adhesion // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0007229 // integrin-mediated signaling pathway // inferred by curator /// 0010042 // response to manganese ion // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030216 // keratinocyte differentiation // inferred from expression pattern /// 0030574 // collagen catabolic process // traceable author statement /// 0033627 // cell adhesion mediated by integrin // inferred from mutant phenotype /// 0033630 // positive regulation of cell adhesion mediated by integrin // inferred from mutant phenotype /// 0033631 // cell-cell adhesion mediated by integrin // inferred from expression pattern /// 0034241 // positive regulation of macrophage fusion // inferred from mutant phenotype /// 0034612 // response to tumor necrosis factor // inferred from direct assay /// 0034616 // response to laminar fluid shear stress // inferred from electronic annotation /// 0042117 // monocyte activation // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from direct assay /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // inferred from direct assay /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // traceable author statement /// 0051384 // response to glucocorticoid // inferred from sequence or structural similarity /// 0051549 // positive regulation of keratinocyte migration // inferred from mutant phenotype /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0031233 // intrinsic component of external side of plasma membrane // inferred from sequence or structural similarity 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005178 // integrin binding // inferred by curator /// 0005178 // integrin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from mutant phenotype /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from sequence or structural similarity /// 0043236 // laminin binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 45.17 564.64 4.19 0.00 0.01 -4.47
209567_at 209567_at BC001811 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001811.1 /DEF=Homo sapiens, Similar to regulator for ribosome resistance homolog (S. cerevisiae), clone MGC:2755, mRNA, complete cds. /FEA=mRNA /PROD=Similar to regulator for ribosome resistancehomolog (S. cerevisiae) /DB_XREF=gi:12804750 /UG=Hs.71827 KIAA0112 protein; homolog of yeast ribosome biogenesis regulatory protein RRS1 /FL=gb:BC001811.1 BC001811 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) RRS1 23212 NM_015169 0007080 // mitotic metaphase plate congression // inferred from mutant phenotype /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 74.55 115.45 4.19 0.00 0.01 -4.47
209249_s_at 209249_s_at AF131820 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF131820.1 /DEF=Homo sapiens clone 25077 mRNA sequence, complete cds. /FEA=mRNA /PROD=Unknown /DB_XREF=gi:4406655 /UG=Hs.182470 PTD010 protein /FL=gb:AF060923.1 gb:AL136713.1 gb:AF131820.1 gb:AF078863.1 gb:AB009685.1 gb:NM_014394.1 AF131820 growth hormone inducible transmembrane protein GHITM 27069 NM_014394 0006915 // apoptotic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -256.75 901.12 -4.19 0.00 0.01 -4.47
217839_at 217839_at NM_006070 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006070.1 /DEF=Homo sapiens TRK-fused gene (TFG), mRNA. /FEA=mRNA /GEN=TFG /PROD=TRK-fused gene /DB_XREF=gi:5174718 /UG=Hs.250897 TRK-fused gene /FL=gb:NM_006070.1 NM_006070 TRK-fused gene TFG 10342 NM_001007565 /// NM_001195478 /// NM_001195479 /// NM_006070 /// XM_005247066 /// XM_006713472 /// XM_006713473 0007165 // signal transduction // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0005737 // cytoplasm // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation -232.42 796.91 -4.18 0.00 0.01 -4.47
212245_at 212245_at AL567779 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL567779 /FEA=EST /DB_XREF=gi:12921478 /DB_XREF=est:AL567779 /CLONE=CS0DF034YB08 (3 prime) /UG=Hs.84775 Human transposon-like element mRNA AL567779 multiple coagulation factor deficiency 2 MCFD2 90411 NM_001171506 /// NM_001171507 /// NM_001171508 /// NM_001171509 /// NM_001171510 /// NM_001171511 /// NM_139279 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 107.18 255.26 4.18 0.00 0.01 -4.47
214659_x_at 214659_x_at AC007956 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC007956 /DEF=Homo sapiens chromosome 14 clones CTD-3211F8 and RP11-173A8 containing KIAA0317 gene, complete cds; and unknown gene /FEA=CDS_1 /DB_XREF=gi:7341426 /UG=Hs.159471 ZAP3 protein AC007956 YLP motif containing 1 YLPM1 56252 NM_019589 /// XM_005267860 /// XR_245704 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0032204 // regulation of telomere maintenance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 57.65 90.33 4.18 0.00 0.01 -4.47
212652_s_at 212652_s_at AA524345 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA524345 /FEA=EST /DB_XREF=gi:2265273 /DB_XREF=est:ng43a06.s1 /CLONE=IMAGE:937522 /UG=Hs.267812 sorting nexin 4 AA524345 sorting nexin 4 SNX4 8723 NM_003794 /// NR_073435 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006897 // endocytosis // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from mutant phenotype /// 0032456 // endocytic recycling // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from mutant phenotype 53.02 149.99 4.18 0.00 0.01 -4.47
209850_s_at 209850_s_at BC005406 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005406.1 /DEF=Homo sapiens, Cdc42 effector protein 2, clone MGC:5143, mRNA, complete cds. /FEA=mRNA /PROD=Cdc42 effector protein 2 /DB_XREF=gi:13529304 /UG=Hs.12289 Cdc42 effector protein 2 /FL=gb:BC005406.1 gb:AF001436.1 gb:AF098290.1 gb:AF163840.1 gb:NM_006779.1 BC005406 CDC42 effector protein (Rho GTPase binding) 2 CDC42EP2 10435 NM_006779 0007015 // actin filament organization // non-traceable author statement /// 0008360 // regulation of cell shape // inferred from direct assay /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0030838 // positive regulation of actin filament polymerization // inferred from direct assay /// 0031274 // positive regulation of pseudopodium assembly // inferred from direct assay /// 0031334 // positive regulation of protein complex assembly // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0001515 // opioid peptide activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0017049 // GTP-Rho binding // inferred from physical interaction -50.52 166.04 -4.18 0.00 0.01 -4.47
209206_at 209206_at AV701283 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV701283 /FEA=EST /DB_XREF=gi:10717613 /DB_XREF=est:AV701283 /CLONE=ADAAGD06 /UG=Hs.50785 SEC22, vesicle trafficking protein (S. cerevisiae)-like 1 /FL=gb:BC001364.1 gb:AF047442.1 gb:NM_004892.1 AV701283 vesicle-trafficking protein SEC22b-like /// SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) LOC102724364 /// SEC22B 9554 /// 102724364 NM_004892 /// XR_426913 /// XR_431332 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 48.53 73.89 4.18 0.00 0.01 -4.47
206481_s_at 206481_s_at NM_001290 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001290.1 /DEF=Homo sapiens LIM domain binding 2 (LDB2), mRNA. /FEA=mRNA /GEN=LDB2 /PROD=LIM domain binding 2 /DB_XREF=gi:4504970 /UG=Hs.4980 LIM domain binding 2 /FL=gb:AF047337.1 gb:AF064492.1 gb:AF068651.1 gb:NM_001290.1 NM_001290 LIM domain binding 2 LDB2 9079 NM_001130834 /// NM_001290 /// XM_005248197 /// XM_005248198 /// XM_005248201 /// XM_005248202 /// XM_005248203 /// XM_005248205 /// XM_006713975 /// XM_006713976 /// XM_006713977 /// XM_006713978 /// XM_006713979 /// XM_006713980 /// XM_006713981 /// XM_006713982 /// XM_006713983 /// XM_006713984 0001942 // hair follicle development // inferred from electronic annotation /// 0010669 // epithelial structure maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0044089 // positive regulation of cellular component biogenesis // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation 0000989 // transcription factor binding transcription factor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030274 // LIM domain binding // inferred from sequence or structural similarity 113.97 342.41 4.18 0.00 0.01 -4.47
212853_at 212853_at AA779297 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA779297 /FEA=EST /DB_XREF=gi:2838628 /DB_XREF=est:zj43h11.s1 /CLONE=IMAGE:453093 /UG=Hs.240112 KIAA0276 protein AA779297 DCN1, defective in cullin neddylation 1, domain containing 4 DCUN1D4 23142 NM_001040402 /// NM_001287755 /// NM_001287757 /// NM_015115 /// XM_005265731 /// XM_005265732 /// XM_005265733 /// XM_005265734 /// XR_245254 /// XR_427521 0005634 // nucleus // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -48.85 86.97 -4.18 0.00 0.01 -4.47
211911_x_at 211911_x_at L07950 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L07950.1 /DEF=Homo sapiens MHC class I HLA B71 mRNA, complete cds. /FEA=CDS /GEN=HLA-B /PROD=MHC HLA B71 /DB_XREF=gi:307236 /FL=gb:L07950.1 L07950 major histocompatibility complex, class I, B HLA-B 3106 NM_005514 /// XM_005249043 /// XM_005275100 /// XM_005275238 /// XM_005275376 /// XM_005275377 /// XM_005275535 /// XM_006725904 /// XM_006725905 /// XR_246962 /// XR_427830 0001539 // cilium or flagellum-dependent cell motility // non-traceable author statement /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0002667 // regulation of T cell anergy // inferred from mutant phenotype /// 0006952 // defense response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016045 // detection of bacterium // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032655 // regulation of interleukin-12 production // inferred from mutant phenotype /// 0032675 // regulation of interleukin-6 production // inferred from mutant phenotype /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 2001198 // regulation of dendritic cell differentiation // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005858 // axonemal dynein complex // non-traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0032395 // MHC class II receptor activity // non-traceable author statement /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0046977 // TAP binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction -202.45 438.38 -4.18 0.00 0.01 -4.47
201870_at 201870_at NM_006809 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006809.1 /DEF=Homo sapiens translocase of outer mitochondrial membrane 34 (TOM34), mRNA. /FEA=mRNA /GEN=TOM34 /PROD=translocase of outer mitochondrial membrane 34 /DB_XREF=gi:5803204 /UG=Hs.76927 translocase of outer mitochondrial membrane 34 /FL=gb:BC001763.1 gb:U58970.1 gb:NM_006809.1 NM_006809 translocase of outer mitochondrial membrane 34 TOMM34 10953 NM_006809 /// XM_005260254 /// XR_244131 0006626 // protein targeting to mitochondrion // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from physical interaction -66.78 292.94 -4.17 0.00 0.01 -4.47
222035_s_at 222035_s_at AI984479 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI984479 /FEA=EST /DB_XREF=gi:5811756 /DB_XREF=est:wr83e06.x1 /CLONE=IMAGE:2494306 /UG=Hs.49007 poly(A) polymerase alpha AI984479 poly(A) polymerase alpha PAPOLA 10914 NM_001252006 /// NM_001252007 /// NM_001293627 /// NM_001293628 /// NM_001293632 /// NM_032632 /// XM_005267280 /// XM_005267281 /// XM_005267282 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006378 // mRNA polyadenylation // non-traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0043631 // RNA polyadenylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // not recorded /// 0004652 // polynucleotide adenylyltransferase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 58.75 190.40 4.17 0.00 0.01 -4.47
217880_at 217880_at N21397 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N21397 /FEA=EST /DB_XREF=gi:1126567 /DB_XREF=est:yx54e08.s1 /CLONE=IMAGE:265574 /UG=Hs.172405 cell division cycle 27 /FL=gb:NM_001256.1 N21397 cell division cycle 27 CDC27 996 NM_001114091 /// NM_001256 /// NM_001293089 /// NM_001293091 /// XM_005257892 /// XM_005257895 /// XM_006722217 /// XM_006722218 /// XM_006722219 /// XM_006722220 /// XM_006722221 /// XR_429935 0000278 // mitotic cell cycle // traceable author statement /// 0007091 // metaphase/anaphase transition of mitotic cell cycle // inferred from mutant phenotype /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005876 // spindle microtubule // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction 70.70 129.80 4.16 0.00 0.01 -4.47
218491_s_at 218491_s_at NM_014174 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014174.1 /DEF=Homo sapiens HSPC144 protein (HSPC144), mRNA. /FEA=mRNA /GEN=HSPC144 /PROD=HSPC144 protein /DB_XREF=gi:7661803 /UG=Hs.13645 HSPC144 protein /FL=gb:AF161493.1 gb:NM_014174.1 NM_014174 thymocyte nuclear protein 1 THYN1 29087 NM_001037304 /// NM_001037305 /// NM_014174 /// NM_199297 /// NM_199298 /// XM_005271527 /// XM_005271528 /// XM_006718827 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity 38.98 88.96 4.16 0.00 0.01 -4.47
201516_at 201516_at NM_003132 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003132.1 /DEF=Homo sapiens spermidine synthase (SRM), mRNA. /FEA=mRNA /GEN=SRM /PROD=spermidine synthase /DB_XREF=gi:4507208 /UG=Hs.76244 spermidine synthase /FL=gb:BC000309.1 gb:NM_003132.1 gb:M34338.1 NM_003132 spermidine synthase SRM 6723 NM_003132 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0008295 // spermidine biosynthetic process // inferred from direct assay /// 0008295 // spermidine biosynthetic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004766 // spermidine synthase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 87.85 283.62 4.16 0.00 0.01 -4.47
202519_at 202519_at NM_014938 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014938.1 /DEF=Homo sapiens KIAA0867 protein (MONDOA), mRNA. /FEA=mRNA /GEN=MONDOA /PROD=MondoA protein /DB_XREF=gi:7662347 /UG=Hs.52081 KIAA0867 protein /FL=gb:AB020674.1 gb:NM_014938.1 NM_014938 MLX interacting protein MLXIP 22877 NM_014938 /// XM_006719290 /// XM_006719291 /// XM_006719292 /// XM_006719293 /// XM_006719294 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 87.40 177.65 4.16 0.00 0.01 -4.47
216520_s_at 216520_s_at AF072098 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF072098 /DEF=Homo sapiens HDCMB21P gene, complete cds /FEA=CDS /DB_XREF=gi:5725513 /UG=Hs.279860 tumor protein, translationally-controlled 1 AF072098 uncharacterized LOC101928826 /// tumor protein, translationally-controlled 1 LOC101928826 /// TPT1 7178 /// 101928826 NM_001286272 /// NM_001286273 /// NM_003295 /// XR_242670 /// XR_250536 /// XR_252641 0006816 // calcium ion transport // inferred by curator /// 0006874 // cellular calcium ion homeostasis // inferred by curator /// 0009615 // response to virus // inferred from expression pattern /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype /// 2000384 // negative regulation of ectoderm development // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005771 // multivesicular body // inferred from direct assay /// 0045298 // tubulin complex // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -656.72 3819.26 -4.16 0.00 0.01 -4.47
208878_s_at 208878_s_at AF092132 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF092132.1 /DEF=Homo sapiens PAK2 mRNA, complete cds. /FEA=mRNA /PROD=PAK2 /DB_XREF=gi:5138913 /UG=Hs.284275 Homo sapiens PAK2 mRNA, complete cds /FL=gb:AF092132.1 AF092132 p21 protein (Cdc42/Rac)-activated kinase 2 PAK2 5062 NM_002577 0000278 // mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0031295 // T cell costimulation // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001271 // negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030296 // protein tyrosine kinase activator activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction -90.35 192.07 -4.16 0.00 0.01 -4.47
218115_at 218115_at NM_018154 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018154.1 /DEF=Homo sapiens hypothetical protein FLJ10604 (FLJ10604), mRNA. /FEA=mRNA /GEN=FLJ10604 /PROD=hypothetical protein FLJ10604 /DB_XREF=gi:8922548 /UG=Hs.26516 hypothetical protein FLJ10604 /FL=gb:NM_018154.1 NM_018154 anti-silencing function 1B histone chaperone ASF1B 55723 NM_018154 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from electronic annotation 40.20 133.62 4.16 0.00 0.01 -4.47
213838_at 213838_at AA191426 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA191426 /FEA=EST /DB_XREF=gi:1780105 /DB_XREF=est:zp83g09.s1 /CLONE=IMAGE:626848 /UG=Hs.279886 RAN binding protein 9 AA191426 nucleolar protein 7, 27kDa NOL7 51406 NM_016167 /// XM_005249173 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay 81.40 126.17 4.16 0.00 0.01 -4.47
208722_s_at 208722_s_at BC001081 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001081.1 /DEF=Homo sapiens, anaphase-promoting complex subunit 5, clone MGC:2750, mRNA, complete cds. /FEA=mRNA /PROD=anaphase-promoting complex subunit 5 /DB_XREF=gi:12654502 /UG=Hs.7101 anaphase-promoting complex subunit 5 /FL=gb:BC001081.1 gb:BC001950.1 gb:AF191339.1 gb:NM_016237.1 BC001081 anaphase promoting complex subunit 5 ANAPC5 51433 NM_001137559 /// NM_016237 /// XM_005253900 /// XM_006719449 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000090 // mitotic anaphase // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction 41.18 167.29 4.16 0.00 0.01 -4.47
215165_x_at 215165_x_at AL080099 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080099.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564G1272 (from clone DKFZp564G1272); partial cds. /FEA=mRNA /GEN=DKFZp564G1272 /PROD=hypothetical protein /DB_XREF=gi:5262522 /UG=Hs.2057 uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5-decarboxylase) AL080099 uridine monophosphate synthetase UMPS 7372 NM_000373 /// NR_033434 /// NR_033437 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006207 // 'de novo' pyrimidine nucleobase biosynthetic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006222 // UMP biosynthetic process // inferred from direct assay /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0044205 // 'de novo' UMP biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046134 // pyrimidine nucleoside biosynthetic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004588 // orotate phosphoribosyltransferase activity // inferred from direct assay /// 0004588 // orotate phosphoribosyltransferase activity // traceable author statement /// 0004590 // orotidine-5'-phosphate decarboxylase activity // inferred from direct assay /// 0004590 // orotidine-5'-phosphate decarboxylase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 60.70 119.40 4.16 0.00 0.01 -4.47
210676_x_at 210676_x_at U64675 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U64675.2 /DEF=Homo sapiens sperm membrane protein BS-63 mRNA, complete cds. /FEA=mRNA /PROD=sperm membrane protein BS-63 /DB_XREF=gi:5809677 /UG=Hs.199179 RAN binding protein 2 /FL=gb:U64675.2 U64675 RANBP2-like and GRIP domain containing 3 /// RANBP2-like and GRIP domain containing 4 /// RANBP2-like and GRIP domain containing 5 /// RANBP2-like and GRIP domain containing 6 /// RANBP2-like and GRIP domain containing 8 RGPD3 /// RGPD4 /// RGPD5 /// RGPD6 /// RGPD8 84220 /// 285190 /// 653489 /// 727851 /// 729540 NM_001037866 /// NM_001123363 /// NM_001144013 /// NM_001164463 /// NM_005054 /// NM_032260 /// NM_182588 /// XM_005263747 /// XM_005263748 /// XM_005263753 /// XM_005263755 /// XM_005263756 /// XM_005263819 /// XM_005263820 /// XM_005263821 /// XM_005263822 /// XM_006712454 /// XM_006712708 /// XM_006712794 0000042 // protein targeting to Golgi // inferred from electronic annotation /// 0033132 // negative regulation of glucokinase activity // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0090526 // regulation of gluconeogenesis involved in cellular glucose homeostasis // inferred from electronic annotation 0005643 // nuclear pore // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // non-traceable author statement -35.43 129.94 -4.15 0.00 0.01 -4.47
201697_s_at 201697_s_at NM_001379 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001379.1 /DEF=Homo sapiens DNA (cytosine-5-)-methyltransferase 1 (DNMT1), mRNA. /FEA=mRNA /GEN=DNMT1 /PROD=DNA (cytosine-5-)-methyltransferase 1 /DB_XREF=gi:4503350 /UG=Hs.77462 DNA (cytosine-5-)-methyltransferase 1 /FL=gb:NM_001379.1 NM_001379 DNA (cytosine-5-)-methyltransferase 1 DNMT1 1786 NM_001130823 /// NM_001379 /// XM_006722681 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006306 // DNA methylation // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0010216 // maintenance of DNA methylation // inferred from direct assay /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0016458 // gene silencing // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from mutant phenotype /// 0051573 // negative regulation of histone H3-K9 methylation // inferred from mutant phenotype /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// 0090116 // C-5 methylation of cytosine // inferred from electronic annotation 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005657 // replication fork // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008327 // methyl-CpG binding // inferred from electronic annotation /// 0009008 // DNA-methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 68.00 177.45 4.15 0.00 0.01 -4.47
207749_s_at 207749_s_at NM_002718 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002718.1 /DEF=Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 72), alpha isoform and (PR 130), beta isoform (PPP2R3), mRNA. /FEA=mRNA /GEN=PPP2R3 /PROD=protein phosphatase 2 (formerly 2A), regulatorysubunit B (PR 72), alpha isoform and (PR 130), betaisoform /DB_XREF=gi:4506020 /UG=Hs.28219 protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 72), alpha isoform and (PR 130), beta isoform /FL=gb:L12146.1 gb:NM_002718.1 NM_002718 protein phosphatase 2, regulatory subunit B'', alpha PPP2R3A 5523 NM_001190447 /// NM_002718 /// NM_181897 /// XM_006713686 0001754 // eye photoreceptor cell differentiation // inferred from genetic interaction /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0007525 // somatic muscle development // inferred from genetic interaction /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // traceable author statement /// 0061053 // somite development // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from genetic interaction /// 0090244 // Wnt signaling pathway involved in somitogenesis // inferred by curator /// 0090249 // regulation of cell motility involved in somitogenic axis elongation // inferred from genetic interaction /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from direct assay 0000159 // protein phosphatase type 2A complex // inferred from direct assay /// 0000159 // protein phosphatase type 2A complex // inferred from sequence or structural similarity 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -46.95 123.00 -4.15 0.00 0.01 -4.47
213620_s_at 213620_s_at AA126728 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA126728 /FEA=EST /DB_XREF=gi:1686292 /DB_XREF=est:zk95d07.s1 /CLONE=IMAGE:490573 /UG=Hs.83733 intercellular adhesion molecule 2 AA126728 intercellular adhesion molecule 2 ICAM2 3384 NM_000873 /// NM_001099786 /// NM_001099787 /// NM_001099788 /// NM_001099789 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0050776 // regulation of immune response // traceable author statement 0001931 // uropod // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from electronic annotation 0005178 // integrin binding // inferred from physical interaction 463.17 1910.54 4.15 0.00 0.01 -4.47
204642_at 204642_at NM_001400 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001400.2 /DEF=Homo sapiens endothelial differentiation, sphingolipid G-protein-coupled receptor, 1 (EDG1), mRNA. /FEA=mRNA /GEN=EDG1 /PROD=endothelial differentiation, sphingolipidG-protein-coupled receptor, 1 /DB_XREF=gi:13027635 /UG=Hs.154210 endothelial differentiation, sphingolipid G-protein-coupled receptor, 1 /FL=gb:NM_001400.2 gb:M31210.1 gb:AF233365.1 NM_001400 sphingosine-1-phosphate receptor 1 S1PR1 1901 NM_001400 /// XM_006710399 0001525 // angiogenesis // inferred from electronic annotation /// 0001955 // blood vessel maturation // inferred from sequence or structural similarity /// 0003245 // cardiac muscle tissue growth involved in heart morphogenesis // inferred from sequence or structural similarity /// 0003376 // sphingosine-1-phosphate signaling pathway // inferred from direct assay /// 0006935 // chemotaxis // inferred from sequence or structural similarity /// 0007155 // cell adhesion // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from sequence or structural similarity /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030500 // regulation of bone mineralization // inferred from sequence or structural similarity /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0032320 // positive regulation of Ras GTPase activity // inferred from electronic annotation /// 0045124 // regulation of bone resorption // inferred from sequence or structural similarity /// 0045446 // endothelial cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// 0051497 // negative regulation of stress fiber assembly // inferred from electronic annotation /// 0061384 // heart trabecula morphogenesis // inferred from sequence or structural similarity /// 0072678 // T cell migration // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031226 // intrinsic component of plasma membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation 0001664 // G-protein coupled receptor binding // inferred from physical interaction /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0038036 // sphingosine-1-phosphate receptor activity // inferred from direct assay /// 0046625 // sphingolipid binding // inferred from electronic annotation -158.37 442.36 -4.15 0.00 0.01 -4.47
201094_at 201094_at NM_001032 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001032.1 /DEF=Homo sapiens ribosomal protein S29 (RPS29), mRNA. /FEA=mRNA /GEN=RPS29 /PROD=ribosomal protein S29 /DB_XREF=gi:4506716 /UG=Hs.539 ribosomal protein S29 /FL=gb:L31610.1 gb:NM_001032.1 gb:U14973.1 NM_001032 ribosomal protein S29 RPS29 6235 NM_001030001 /// NM_001032 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -554.80 2829.65 -4.14 0.00 0.01 -4.47
218028_at 218028_at NM_016031 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016031.1 /DEF=Homo sapiens elongation of very long chain fatty acids (FEN1Elo2, SUR4Elo3, yeast)-like 1 (ELOVL1), mRNA. /FEA=mRNA /GEN=ELOVL1 /PROD=elongation of very long chain fatty acids(FEN1Elo2, SUR4Elo3, yeast)-like 1 /DB_XREF=gi:7705798 /UG=Hs.25597 elongation of very long chain fatty acids (FEN1Elo2, SUR4Elo3, yeast)-like 1 /FL=gb:BC000618.1 gb:NM_022821.1 gb:AF151846.1 gb:NM_016031.1 NM_016031 ELOVL fatty acid elongase 1 /// microRNA 6734 ELOVL1 /// MIR6734 64834 /// 102466723 NM_001256399 /// NM_001256401 /// NM_001256402 /// NM_022821 /// NR_046117 /// NR_106792 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0019367 // fatty acid elongation, saturated fatty acid // inferred from direct assay /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0030148 // sphingolipid biosynthetic process // inferred from mutant phenotype /// 0034625 // fatty acid elongation, monounsaturated fatty acid // inferred from direct assay /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0042761 // very long-chain fatty acid biosynthetic process // inferred from direct assay /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // non-traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0009922 // fatty acid elongase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 70.53 156.99 4.14 0.00 0.01 -4.47
209340_at 209340_at S73498 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:S73498.1 /DEF=Homo sapiens AgX-1 antigen mRNA, complete cds. /FEA=mRNA /PROD=AgX-1 antigen /DB_XREF=gi:688010 /UG=Hs.21293 UDP-N-acteylglucosamine pyrophosphorylase 1 /FL=gb:AB011004.1 gb:NM_003115.1 gb:S73498.1 S73498 UDP-N-acteylglucosamine pyrophosphorylase 1 UAP1 6675 NM_003115 /// XM_005245462 /// XM_005245465 0006047 // UDP-N-acetylglucosamine metabolic process // inferred from electronic annotation /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // inferred from electronic annotation /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // traceable author statement /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0003977 // UDP-N-acetylglucosamine diphosphorylase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 133.65 366.65 4.14 0.00 0.01 -4.47
40489_at 40489_at D31840 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. D31840:Human DRPLA mRNA for ORF, complete cds /cds=(238,3795) /gb=D31840 /gi=862329 /ug=Hs.169488 /len=4279 D31840 atrophin 1 ATN1 1822 NM_001007026 /// NM_001940 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0009404 // toxin metabolic process // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0030011 // maintenance of cell polarity // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0016363 // nuclear matrix // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0050827 // toxin receptor binding // inferred from electronic annotation 51.20 115.30 4.14 0.00 0.01 -4.47
221647_s_at 221647_s_at AL136935 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136935.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586O0222 (from clone DKFZp586O0222); complete cds. /FEA=mRNA /GEN=DKFZp586O0222 /PROD=hypothetical protein /DB_XREF=gi:12053364 /UG=Hs.7393 hypothetical protein from EUROIMAGE 1987170 /FL=gb:AL136935.1 AL136935 microRNA 6743 /// RIC8 guanine nucleotide exchange factor A MIR6743 /// RIC8A 60626 /// 102465445 NM_001286134 /// NM_021932 /// NR_106801 /// XM_005253052 /// XM_006718270 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001944 // vasculature development // inferred from electronic annotation /// 0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0042074 // cell migration involved in gastrulation // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0070586 // cell-cell adhesion involved in gastrulation // inferred from electronic annotation /// 0071711 // basement membrane organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 103.87 260.76 4.14 0.00 0.01 -4.47
202075_s_at 202075_s_at NM_006227 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006227.1 /DEF=Homo sapiens phospholipid transfer protein (PLTP), mRNA. /FEA=mRNA /GEN=PLTP /PROD=phospholipid transfer protein /DB_XREF=gi:5453913 /UG=Hs.283007 phospholipid transfer protein /FL=gb:L26232.1 gb:NM_006227.1 NM_006227 phospholipid transfer protein PLTP 5360 NM_001242920 /// NM_001242921 /// NM_006227 /// NM_182676 /// XM_005260439 0006629 // lipid metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0010189 // vitamin E biosynthetic process // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay 0008289 // lipid binding // inferred from electronic annotation -66.47 161.54 -4.14 0.00 0.01 -4.47
204153_s_at 204153_s_at NM_002405 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002405.1 /DEF=Homo sapiens manic fringe (Drosophila) homolog (MFNG), mRNA. /FEA=mRNA /GEN=MFNG /PROD=manic fringe (Drosophila) homolog /DB_XREF=gi:4505158 /UG=Hs.31939 manic fringe (Drosophila) homolog /FL=gb:U94352.1 gb:NM_002405.1 NM_002405 MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase MFNG 4242 NM_001166343 /// NM_002405 /// NR_029413 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0033829 // O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 86.45 363.07 4.14 0.00 0.01 -4.47
201668_x_at 201668_x_at AW163148 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW163148 /FEA=EST /DB_XREF=gi:6302181 /DB_XREF=est:au92d06.y1 /CLONE=IMAGE:2783723 /UG=Hs.75607 myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L) /FL=gb:NM_002356.4 gb:M68956.1 gb:D10522.1 AW163148 myristoylated alanine-rich protein kinase C substrate MARCKS 4082 NM_002356 0006112 // energy reserve metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // traceable author statement -236.70 437.10 -4.14 0.00 0.01 -4.47
209627_s_at 209627_s_at AY008372 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AY008372.1 /DEF=Homo sapiens oxysterol binding protein-related protein 3 (ORP3) mRNA, complete cds. /FEA=mRNA /GEN=ORP3 /PROD=oxysterol binding protein-related protein 3 /DB_XREF=gi:10880972 /UG=Hs.197955 KIAA0704 protein /FL=gb:AY008372.1 AY008372 oxysterol binding protein-like 3 OSBPL3 26031 NM_015550 /// NM_145320 /// NM_145321 /// NM_145322 /// NM_145323 /// NM_145324 /// NR_104111 /// NR_104112 /// XM_005249698 /// XM_006715681 /// XM_006715682 /// XM_006715683 /// XM_006715684 /// XR_428073 /// XR_428074 /// XR_428075 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0097038 // perinuclear endoplasmic reticulum // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from direct assay 43.35 67.75 4.14 0.00 0.01 -4.47
217726_at 217726_at NM_016057 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016057.1 /DEF=Homo sapiens CGI-120 protein (LOC51644), mRNA. /FEA=mRNA /GEN=LOC51644 /PROD=CGI-120 protein /DB_XREF=gi:7706336 /UG=Hs.181271 CGI-120 protein /FL=gb:AB047848.1 gb:BC002849.1 gb:AF151878.1 gb:AF161529.1 gb:NM_016057.1 NM_016057 coatomer protein complex, subunit zeta 1 COPZ1 22818 NM_001271734 /// NM_001271735 /// NM_001271736 /// NM_016057 /// NR_073424 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from direct assay /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from direct assay /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 98.05 344.93 4.14 0.00 0.01 -4.47
213570_at 213570_at BF516289 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF516289 /FEA=EST /DB_XREF=gi:11601468 /DB_XREF=est:UI-H-BW1-anz-d-07-0-UI.s1 /CLONE=IMAGE:3083964 /UG=Hs.19122 eukaryotic translation initiation factor 4E-like 3 BF516289 eukaryotic translation initiation factor 4E family member 2 EIF4E2 9470 NM_001276336 /// NM_001276337 /// NM_001282958 /// NM_004846 /// XM_005246975 /// XR_427124 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005845 // mRNA cap binding complex // inferred from direct assay 0000339 // RNA cap binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 35.35 29.32 4.14 0.00 0.01 -4.47
218172_s_at 218172_s_at NM_018630 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018630.1 /DEF=Homo sapiens hypothetical protein PRO2577 (PRO2577), mRNA. /FEA=mRNA /GEN=PRO2577 /PROD=hypothetical protein PRO2577 /DB_XREF=gi:8924181 /UG=Hs.241576 hypothetical protein PRO2577 /FL=gb:AF116708.1 gb:NM_018630.1 NM_018630 derlin 1 DERL1 79139 NM_001134671 /// NM_024295 /// XM_006716657 0006810 // transport // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019060 // intracellular transport of viral protein in host cell // traceable author statement /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from direct assay /// 0030970 // retrograde protein transport, ER to cytosol // inferred from direct assay /// 0030970 // retrograde protein transport, ER to cytosol // inferred from mutant phenotype /// 0034620 // cellular response to unfolded protein // inferred from electronic annotation /// 0045184 // establishment of protein localization // traceable author statement 0000836 // Hrd1p ubiquitin ligase complex // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay 0004872 // receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from direct assay 45.60 76.85 4.13 0.00 0.01 -4.47
217981_s_at 217981_s_at NM_012192 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012192.1 /DEF=Homo sapiens fracture callus 1 (rat) homolog (FXC1), mRNA. /FEA=mRNA /GEN=FXC1 /PROD=fracture callus 1 (rat) homolog /DB_XREF=gi:6912381 /UG=Hs.54943 fracture callus 1 (rat) homolog /FL=gb:AF150105.1 gb:AF152355.1 gb:NM_012192.1 gb:AF183415.1 NM_012192 translocase of inner mitochondrial membrane 10 homolog B (yeast) TIMM10B 26515 NM_012192 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from direct assay 0046872 // metal ion binding // inferred from electronic annotation 42.03 50.01 4.13 0.00 0.01 -4.47
218240_at 218240_at NM_017595 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017595.1 /DEF=Homo sapiens I-kappa-B-interacting Ras-like protein 2 (KBRAS2), mRNA. /FEA=mRNA /GEN=KBRAS2 /PROD=I-kappa-B-interacting Ras-like protein 2 /DB_XREF=gi:8922150 /UG=Hs.22937 I-kappa-B-interacting Ras-like protein 2 /FL=gb:NM_017595.1 NM_017595 NFKB inhibitor interacting Ras-like 2 NKIRAS2 28511 NM_001001349 /// NM_001144927 /// NM_001144928 /// NM_001144929 /// NM_017595 /// XM_005257251 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 36.97 86.16 4.13 0.00 0.01 -4.47
209492_x_at 209492_x_at BC003679 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003679.1 /DEF=Homo sapiens, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e, clone MGC:12532, mRNA, complete cds. /FEA=mRNA /PROD=ATP synthase, H+ transporting, mitochondrial F0complex, subunit e /DB_XREF=gi:13277543 /UG=Hs.85539 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e /FL=gb:BC003679.1 BC003679 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E ATP5I 521 NM_007100 /// NR_033743 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046034 // ATP metabolic process // inferred from electronic annotation 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator 103.90 413.98 4.13 0.00 0.01 -4.47
209702_at 209702_at U79260 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U79260.1 /DEF=Human clone 23745 mRNA, complete cds. /FEA=mRNA /PROD=unknown /DB_XREF=gi:1710215 /UG=Hs.284741 hypothetical protein MGC5149 /FL=gb:BC001284.1 gb:U79260.1 U79260 fat mass and obesity associated FTO 79068 NM_001080432 0001659 // temperature homeostasis // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006307 // DNA dealkylation involved in DNA repair // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010883 // regulation of lipid storage // inferred from electronic annotation /// 0035552 // oxidative single-stranded DNA demethylation // inferred from direct assay /// 0035553 // oxidative single-stranded RNA demethylation // inferred from direct assay /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0042245 // RNA repair // inferred from direct assay /// 0044065 // regulation of respiratory system process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060612 // adipose tissue development // inferred from electronic annotation /// 0070350 // regulation of white fat cell proliferation // inferred from electronic annotation /// 0070989 // oxidative demethylation // inferred from direct assay /// 0080111 // DNA demethylation // inferred from direct assay 0005634 // nucleus // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from direct assay 0008198 // ferrous iron binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0035515 // oxidative RNA demethylase activity // inferred from direct assay /// 0035516 // oxidative DNA demethylase activity // inferred from direct assay /// 0043734 // DNA-N1-methyladenine dioxygenase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 65.65 130.30 4.13 0.00 0.01 -4.47
204132_s_at 204132_s_at NM_001455 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001455.1 /DEF=Homo sapiens forkhead box O3A (FOXO3A), mRNA. /FEA=mRNA /GEN=FOXO3A /PROD=forkhead box O3A /DB_XREF=gi:4503738 /UG=Hs.14845 forkhead box O3A /FL=gb:AF032886.1 gb:NM_001455.1 NM_001455 forkhead box O3 /// forkhead box O3B pseudogene FOXO3 /// FOXO3B 2309 /// 2310 NM_001455 /// NM_201559 /// NR_026718 /// XM_005266867 /// XM_005266868 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from electronic annotation /// 0001544 // initiation of primordial ovarian follicle growth // inferred from electronic annotation /// 0001547 // antral ovarian follicle growth // inferred from electronic annotation /// 0001556 // oocyte maturation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007389 // pattern specification process // not recorded /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009790 // embryo development // /// 0009888 // tissue development // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from sequence or structural similarity /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045648 // positive regulation of erythrocyte differentiation // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008301 // DNA binding, bending // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031490 // chromatin DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from direct assay -39.67 57.21 -4.13 0.00 0.01 -4.47
204597_x_at 204597_x_at NM_003155 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003155.1 /DEF=Homo sapiens stanniocalcin 1 (STC1), mRNA. /FEA=mRNA /GEN=STC1 /PROD=stanniocalcin 1 /DB_XREF=gi:4507264 /UG=Hs.25590 stanniocalcin 1 /FL=gb:U46768.1 gb:U25997.1 gb:NM_003155.1 NM_003155 stanniocalcin 1 STC1 6781 NM_003155 0001503 // ossification // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007584 // response to nutrient // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation /// 0071320 // cellular response to cAMP // inferred from electronic annotation /// 0071385 // cellular response to glucocorticoid stimulus // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation -39.60 40.80 -4.13 0.00 0.01 -4.47
201961_s_at 201961_s_at AL583171 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL583171 /FEA=EST /DB_XREF=gi:12951876 /DB_XREF=est:AL583171 /CLONE=CS0DL009YA21 (3 prime) /UG=Hs.153639 hypothetical SBBI03 protein /FL=gb:AF077599.1 gb:NM_005785.1 AL583171 ring finger protein 41, E3 ubiquitin protein ligase RNF41 10193 NM_001242826 /// NM_005785 /// NM_194358 /// NM_194359 /// NR_040053 /// XM_005268561 0000209 // protein polyubiquitination // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0043408 // regulation of MAPK cascade // inferred from direct assay /// 0045619 // regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045637 // regulation of myeloid cell differentiation // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0051896 // regulation of protein kinase B signaling // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from mutant phenotype 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005128 // erythropoietin receptor binding // inferred from electronic annotation /// 0005135 // interleukin-3 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031386 // protein tag // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -46.33 65.94 -4.12 0.00 0.01 -4.47
211769_x_at 211769_x_at BC006088 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006088.1 /DEF=Homo sapiens, tumor differentially expressed 1, clone MGC:12658, mRNA, complete cds. /FEA=mRNA /PROD=tumor differentially expressed 1 /DB_XREF=gi:13543883 /FL=gb:BC006088.1 BC006088 serine incorporator 3 SERINC3 10955 NM_006811 /// NM_198941 1902237 // positive regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -197.75 394.15 -4.12 0.00 0.01 -4.47
202808_at 202808_at AK000161 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000161.1 /DEF=Homo sapiens cDNA FLJ20154 fis, clone COL08740. /FEA=mRNA /DB_XREF=gi:7020067 /UG=Hs.10346 hypothetical protein FLJ20154 /FL=gb:NM_017787.1 AK000161 WW domain binding protein 1-like WBP1L 54838 NM_001083913 /// NM_017787 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -102.98 337.71 -4.12 0.00 0.01 -4.47
213637_at 213637_at BE503392 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE503392 /FEA=EST /DB_XREF=gi:9705800 /DB_XREF=est:7a17e04.x1 /CLONE=IMAGE:3219006 /UG=Hs.145020 ESTs, Weakly similar to KIAA1205 protein H.sapiens BE503392 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 DDX52 11056 NM_001291476 /// NM_007010 /// NM_152300 /// XM_006721650 /// XM_006725299 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 45.90 81.28 4.12 0.00 0.01 -4.47
204042_at 204042_at AB020707 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB020707.1 /DEF=Homo sapiens mRNA for KIAA0900 protein, partial cds. /FEA=mRNA /GEN=KIAA0900 /PROD=KIAA0900 protein /DB_XREF=gi:4240288 /UG=Hs.82318 WAS protein family, member 3 /FL=gb:NM_006646.2 gb:AB026543.1 AB020707 WAS protein family, member 3 WASF3 10810 NM_001291965 /// NM_006646 /// XM_005266239 0006461 // protein complex assembly // traceable author statement /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030041 // actin filament polymerization // traceable author statement /// 0031643 // positive regulation of myelination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 61.47 191.44 4.12 0.00 0.01 -4.47
208905_at 208905_at BC005299 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005299.1 /DEF=Homo sapiens, cytochrome c, clone MGC:12367, mRNA, complete cds. /FEA=mRNA /PROD=cytochrome c /DB_XREF=gi:13529022 /UG=Hs.169248 cytochrome c /FL=gb:NM_018947.1 gb:BC005299.1 BC005299 cytochrome c, somatic CYCS 54205 NM_018947 0006309 // apoptotic DNA fragmentation // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0008635 // activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c // traceable author statement /// 0016311 // dephosphorylation // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045333 // cellular respiration // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement 0000159 // protein phosphatase type 2A complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0005829 // cytosol // inferred from mutant phenotype /// 0005829 // cytosol // traceable author statement /// 0070469 // respiratory chain // inferred from electronic annotation 0004722 // protein serine/threonine phosphatase activity // traceable author statement /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // traceable author statement /// 0045155 // electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 280.40 1206.95 4.12 0.00 0.01 -4.47
204078_at 204078_at NM_006455 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006455.1 /DEF=Homo sapiens nucleolar autoantigen (55kD) similar to rat synaptonemal complex protein (SC65), mRNA. /FEA=mRNA /GEN=SC65 /PROD=nucleolar autoantigen (55kD) similar to ratsynaptonemal complex protein /DB_XREF=gi:5454037 /UG=Hs.207251 nucleolar autoantigen (55kD) similar to rat synaptonemal complex protein /FL=gb:BC001047.1 gb:U47621.1 gb:NM_006455.1 NM_006455 leprecan-like 4 LEPREL4 10609 NM_006455 /// XM_005256952 /// XM_005256953 /// XM_006721640 0007130 // synaptonemal complex assembly // traceable author statement 0000794 // condensed nuclear chromosome // traceable author statement /// 0000795 // synaptonemal complex // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 33.90 41.52 4.12 0.00 0.01 -4.47
202919_at 202919_at NM_015387 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015387.1 /DEF=Homo sapiens DKFZP564M112 protein (DKFZP564M112), mRNA. /FEA=mRNA /GEN=DKFZP564M112 /PROD=DKFZP564M112 protein /DB_XREF=gi:7661623 /UG=Hs.107942 DKFZP564M112 protein /FL=gb:AB015441.1 gb:BC005237.1 gb:AF151853.1 gb:AL080070.1 gb:NM_015387.1 NM_015387 MOB family member 4, phocein MOB4 25843 NM_001100819 /// NM_001204094 /// NM_015387 /// NM_199482 0006457 // protein folding // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 102.07 223.31 4.12 0.00 0.01 -4.47
209444_at 209444_at BC001851 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001851.1 /DEF=Homo sapiens, Similar to RAP1, GTP-GDP dissociation stimulator 1, clone MGC:4525, mRNA, complete cds. /FEA=mRNA /PROD=Similar to RAP1, GTP-GDP dissociation stimulator1 /DB_XREF=gi:12804812 /UG=Hs.7940 RAP1, GTP-GDP dissociation stimulator 1 /FL=gb:NM_021159.1 gb:BC001851.1 gb:BC001816.1 gb:AF215923.1 gb:AF237413.1 BC001851 RAP1, GTP-GDP dissociation stimulator 1 RAP1GDS1 5910 NM_001100426 /// NM_001100427 /// NM_001100428 /// NM_001100429 /// NM_001100430 /// NM_021159 /// XM_006714284 /// XM_006714285 0014829 // vascular smooth muscle contraction // inferred from electronic annotation /// 0031034 // myosin filament assembly // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032471 // negative regulation of endoplasmic reticulum calcium ion concentration // inferred from mutant phenotype /// 0043547 // positive regulation of GTPase activity // non-traceable author statement /// 0051561 // positive regulation of mitochondrial calcium ion concentration // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005096 // GTPase activator activity // non-traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -43.15 190.85 -4.12 0.00 0.01 -4.47
203531_at 203531_at BF435809 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF435809 /FEA=EST /DB_XREF=gi:11448124 /DB_XREF=est:nab42a09.x1 /CLONE=IMAGE:3268504 /UG=Hs.101299 cullin 5 /FL=gb:AF327710.1 gb:AF017061.1 gb:NM_003478.1 BF435809 cullin 5 CUL5 8065 NM_003478 /// XM_005271682 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031466 // Cul5-RING ubiquitin ligase complex // inferred from direct assay 0004872 // receptor activity // traceable author statement /// 0005262 // calcium channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay 57.35 183.30 4.12 0.00 0.01 -4.47
212160_at 212160_at AI984005 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI984005 /FEA=EST /DB_XREF=gi:5811224 /DB_XREF=est:wt52c06.x1 /CLONE=IMAGE:2511082 /UG=Hs.85951 exportin, tRNA (nuclear export receptor for tRNAs) /FL=gb:AF039022.1 gb:NM_007235.2 AI984005 exportin, tRNA XPOT 11260 NM_007235 0006409 // tRNA export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000049 // tRNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // inferred from electronic annotation -128.80 259.05 -4.12 0.00 0.01 -4.47
210786_s_at 210786_s_at M93255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M93255.1 /DEF=Human FLI-1 mRNA, complete cds for two alternate splicings. /FEA=mRNA /GEN=FLI-1; FLI-1 /PROD=FLI-1 /DB_XREF=gi:182659 /UG=Hs.108043 Friend leukemia virus integration 1 /FL=gb:M93255.1 M93255 Fli-1 proto-oncogene, ETS transcription factor FLI1 2313 NM_001167681 /// NM_001271010 /// NM_001271012 /// NM_002017 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007599 // hemostasis // traceable author statement /// 0008015 // blood circulation // inferred from electronic annotation /// 0009887 // organ morphogenesis // traceable author statement /// 0030154 // cell differentiation // not recorded /// 0035855 // megakaryocyte development // inferred from electronic annotation 0005634 // nucleus // not recorded 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from electronic annotation /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -143.12 278.96 -4.12 0.00 0.01 -4.47
201180_s_at 201180_s_at J03198 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J03198.1 /DEF=Human stimulatory G protein (of receptor-regulated K+ channels) alpha subunit mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:183224 /UG=Hs.73799 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 /FL=gb:J03005.1 gb:J03198.1 gb:M27543.1 gb:J03238.1 gb:NM_006496.1 J03198 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 GNAI3 2773 NM_006496 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // non-traceable author statement /// 0006906 // vesicle fusion // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // traceable author statement /// 0007194 // negative regulation of adenylate cyclase activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0051301 // cell division // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0042588 // zymogen granule // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031821 // G-protein coupled serotonin receptor binding // not recorded /// 0032794 // GTPase activating protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -127.65 814.65 -4.11 0.00 0.01 -4.47
217099_s_at 217099_s_at AF258545 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF258545 /DEF=Homo sapiens chormosome 17, HC90, HC71AC, HC6 and HC56 genes, complete sequence /FEA=CDS /DB_XREF=gi:10945429 /UG=Hs.19614 gemin4 AF258545 gem (nuclear organelle) associated protein 4 GEMIN4 50628 NM_015721 /// XM_005256667 /// XM_005256668 /// XM_005256670 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0006364 // rRNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0015030 // Cajal body // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0032797 // SMN complex // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097504 // Gemini of coiled bodies // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 45.12 104.76 4.11 0.00 0.01 -4.47
202194_at 202194_at AL117354 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL117354 /DEF=Human DNA sequence from clone RP5-976O13 on chromosome 1p21.2-22.2 Contains part of the gene for CGI-100 protein, 3 isoforms of the gene for M96 protein, ESTs, STSs, GSSs and a CpG Island /FEA=mRNA_1 /DB_XREF=gi:6822199 /UG=Hs.296155 CGI-100 protein /FL=gb:AF151858.1 gb:NM_016040.1 AL117354 transmembrane emp24 protein transport domain containing 5 TMED5 50999 NM_001167830 /// NM_016040 /// NR_030761 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0090161 // Golgi ribbon formation // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0070971 // endoplasmic reticulum exit site // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 78.22 258.86 4.11 0.00 0.01 -4.47
212561_at 212561_at AA349595 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA349595 /FEA=EST /DB_XREF=gi:2001934 /DB_XREF=est:EST56429 /UG=Hs.26797 KIAA1091 protein AA349595 DENN/MADD domain containing 5A DENND5A 23258 NM_001243254 /// NM_015213 /// XM_005252832 /// XM_006718169 /// XR_242782 0032313 // regulation of Rab GTPase activity // inferred from direct assay /// 0032851 // positive regulation of Rab GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0050982 // detection of mechanical stimulus // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017112 // Rab guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from electronic annotation -305.80 522.38 -4.11 0.00 0.01 -4.47
222105_s_at 222105_s_at AA452565 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA452565 /FEA=EST /DB_XREF=gi:2166234 /DB_XREF=est:zx35g11.s1 /CLONE=IMAGE:788516 /UG=Hs.22937 I-kappa-B-interacting Ras-like protein 2 /FL=gb:AF229840.1 AA452565 NFKB inhibitor interacting Ras-like 2 NKIRAS2 28511 NM_001001349 /// NM_001144927 /// NM_001144928 /// NM_001144929 /// NM_017595 /// XM_005257251 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 45.67 83.51 4.11 0.00 0.01 -4.47
204568_at 204568_at NM_014924 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014924.1 /DEF=Homo sapiens KIAA0831 protein (KIAA0831), mRNA. /FEA=mRNA /GEN=KIAA0831 /PROD=KIAA0831 protein /DB_XREF=gi:7662325 /UG=Hs.103000 KIAA0831 protein /FL=gb:AB020638.1 gb:NM_014924.1 NM_014924 autophagy related 14 ATG14 22863 NM_014924 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0006914 // autophagy // inferred from electronic annotation /// 0010508 // positive regulation of autophagy // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005930 // axoneme // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -40.87 92.46 -4.11 0.00 0.01 -4.47
200616_s_at 200616_s_at BC000371 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000371.1 /DEF=Homo sapiens, KIAA0152 gene product, clone MGC:8341, mRNA, complete cds. /FEA=mRNA /PROD=KIAA0152 gene product /DB_XREF=gi:12653206 /UG=Hs.181418 KIAA0152 gene product /FL=gb:BC000371.1 gb:D63486.1 gb:NM_014730.1 BC000371 malectin MLEC 9761 NM_014730 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0019899 // enzyme binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from sequence or structural similarity 78.75 168.95 4.11 0.00 0.01 -4.47
209256_s_at 209256_s_at AF277177 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF277177.1 /DEF=Homo sapiens PNAS-119 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-119 /DB_XREF=gi:12751084 /UG=Hs.192966 KIAA0265 protein /FL=gb:AF277177.1 AF277177 kelch domain containing 10 KLHDC10 23008 NM_014997 /// XM_005250233 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 45.27 42.74 4.11 0.00 0.01 -4.47
209817_at 209817_at M29550 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M29550.1 /DEF=Human calcineurin A1 mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:180706 /UG=Hs.272458 protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha) /FL=gb:M29550.1 M29550 protein phosphatase 3, catalytic subunit, beta isozyme PPP3CB 5532 NM_001142353 /// NM_001142354 /// NM_001289968 /// NM_001289969 /// NM_021132 /// XM_005269944 /// XM_005269945 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007612 // learning // traceable author statement /// 0007613 // memory // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0014883 // transition between fast and slow fiber // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0017156 // calcium ion-dependent exocytosis // inferred from sequence or structural similarity /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0033173 // calcineurin-NFAT signaling cascade // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0035176 // social behavior // inferred from expression pattern /// 0035690 // cellular response to drug // inferred from direct assay /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042098 // T cell proliferation // non-traceable author statement /// 0042110 // T cell activation // traceable author statement /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // traceable author statement /// 0048675 // axon extension // traceable author statement /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // inferred from sequence or structural similarity /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005955 // calcineurin complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // non-traceable author statement /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // non-traceable author statement /// 0008144 // drug binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0030346 // protein phosphatase 2B binding // inferred from direct assay /// 0033192 // calmodulin-dependent protein phosphatase activity // inferred from sequence or structural similarity /// 0033192 // calmodulin-dependent protein phosphatase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from physical interaction 49.83 95.59 4.10 0.00 0.01 -4.47
202816_s_at 202816_s_at AW292882 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW292882 /FEA=EST /DB_XREF=gi:6699518 /DB_XREF=est:UI-H-BW0-aif-g-06-0-UI.s1 /CLONE=IMAGE:2729267 /UG=Hs.153221 synovial sarcoma, translocated to X chromosome /FL=gb:NM_005637.1 AW292882 synovial sarcoma translocation, chromosome 18 SS18 6760 NM_001007559 /// NM_005637 /// XM_005258334 /// XM_006722527 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay -41.60 103.75 -4.10 0.00 0.01 -4.47
214700_x_at 214700_x_at AK000323 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000323.1 /DEF=Homo sapiens cDNA FLJ20316 fis, clone HEP07903, highly similar to U79263 Human clone 23760 mRNA. /FEA=mRNA /DB_XREF=gi:7020332 /UG=Hs.225841 DKFZP434D193 protein AK000323 uncharacterized LOC101929336 /// replication timing regulatory factor 1 LOC101929336 /// RIF1 55183 /// 101929336 NM_001177663 /// NM_001177664 /// NM_001177665 /// NM_018151 /// XM_005246665 /// XM_006712609 /// XM_006712610 /// XM_006712611 /// XR_241332 /// XR_251199 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from electronic annotation 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0001939 // female pronucleus // inferred from electronic annotation /// 0001940 // male pronucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -39.83 73.49 -4.10 0.00 0.01 -4.47
218020_s_at 218020_s_at NM_021943 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021943.1 /DEF=Homo sapiens hypothetical protein FLJ13222 (FLJ13222), mRNA. /FEA=mRNA /GEN=FLJ13222 /PROD=hypothetical protein FLJ13222 /DB_XREF=gi:11345483 /UG=Hs.6120 hypothetical protein FLJ13222 /FL=gb:NM_021943.1 NM_021943 zinc finger, AN1-type domain 3 ZFAND3 60685 NM_021943 /// XM_005249269 /// XM_006715155 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -94.07 317.06 -4.10 0.00 0.01 -4.47
203164_at 203164_at BE464756 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE464756 /FEA=EST /DB_XREF=gi:9510618 /DB_XREF=est:hv89d09.x1 /CLONE=IMAGE:3180593 /UG=Hs.285176 acetyl-Coenzyme A transporter /FL=gb:D88152.1 gb:NM_004733.2 BE464756 solute carrier family 33 (acetyl-CoA transporter), member 1 SLC33A1 9197 NM_001190992 /// NM_004733 /// XM_006713822 0006810 // transport // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0015876 // acetyl-CoA transport // inferred from electronic annotation /// 0015876 // acetyl-CoA transport // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0008521 // acetyl-CoA transporter activity // inferred from electronic annotation 46.55 106.18 4.10 0.00 0.01 -4.47
201702_s_at 201702_s_at AI492873 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI492873 /FEA=EST /DB_XREF=gi:4393876 /DB_XREF=est:th78b05.x1 /CLONE=IMAGE:2124753 /UG=Hs.106019 protein phosphatase 1, regulatory subunit 10 /FL=gb:NM_002714.1 AI492873 protein phosphatase 1, regulatory subunit 10 PPP1R10 5514 NM_002714 /// NR_072994 /// XM_006715130 /// XM_006715131 /// XM_006715132 /// XM_006715133 /// XM_006725489 /// XM_006725490 /// XM_006725491 /// XM_006725492 /// XM_006725703 /// XM_006725704 /// XM_006725705 /// XM_006725706 /// XM_006725820 /// XM_006725821 /// XM_006725822 /// XM_006725823 /// XM_006725912 /// XM_006725913 /// XM_006725914 /// XM_006725915 /// XM_006726005 /// XM_006726006 /// XM_006726007 /// XM_006726008 /// XM_006726100 /// XM_006726101 /// XM_006726102 /// XM_006726103 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006606 // protein import into nucleus // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation 0000785 // chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -43.60 78.53 -4.10 0.00 0.01 -4.47
202370_s_at 202370_s_at NM_001755 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001755.1 /DEF=Homo sapiens core-binding factor, beta subunit (CBFB), transcript variant 2, mRNA. /FEA=mRNA /GEN=CBFB /PROD=core-binding factor, beta subunit, isoform 2 /DB_XREF=gi:13124872 /UG=Hs.179881 core-binding factor, beta subunit /FL=gb:NM_001755.1 NM_001755 core-binding factor, beta subunit CBFB 865 NM_001755 /// NM_022845 /// XM_005256212 /// XM_006721321 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0030098 // lymphocyte differentiation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 224.65 650.05 4.10 0.00 0.01 -4.47
216323_x_at 216323_x_at K03460 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:K03460 /DEF=Human alpha-tubulin isotype H2-alpha gene, last exon /FEA=CDS /DB_XREF=gi:340016 /UG=Hs.75318 tubulin, alpha 1 (testis specific) K03460 tubulin, alpha 3c /// tubulin, alpha 3d TUBA3C /// TUBA3D 7278 /// 113457 NM_006001 /// NM_079836 /// NM_080386 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 45.55 187.75 4.10 0.00 0.01 -4.47
200003_s_at 200003_s_at NM_000991 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000991.1 /DEF=Homo sapiens ribosomal protein L28 (RPL28), mRNA. /FEA=mRNA /GEN=RPL28 /PROD=ribosomal protein L28 /DB_XREF=gi:4506626 /UG=Hs.4437 ribosomal protein L28 /FL=gb:BC000072.1 gb:NM_000991.1 gb:U14969.1 NM_000991 microRNA 6805 /// ribosomal protein L28 MIR6805 /// RPL28 6158 /// 102465483 NM_000991 /// NM_001136134 /// NM_001136135 /// NM_001136136 /// NM_001136137 /// NR_106863 /// XM_005259132 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0044297 // cell body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -490.60 2807.35 -4.10 0.00 0.01 -4.47
221667_s_at 221667_s_at AF133207 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF133207.1 /DEF=Homo sapiens protein kinase (H11) mRNA, complete cds. /FEA=mRNA /GEN=H11 /PROD=protein kinase /DB_XREF=gi:5901654 /UG=Hs.111676 protein kinase H11; small stress protein-like protein HSP22 /FL=gb:AF133207.1 AF133207 heat shock 22kDa protein 8 HSPB8 26353 NM_014365 0006950 // response to stress // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0004672 // protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 46.03 63.91 4.09 0.00 0.01 -4.47
205717_x_at 205717_x_at NM_002588 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002588.1 /DEF=Homo sapiens protocadherin gamma subfamily C, 3 (PCDHGC3), mRNA. /FEA=mRNA /GEN=PCDHGC3 /PROD=protocadherin gamma subfamily C, 3 /DB_XREF=gi:4505632 /UG=Hs.173310 protocadherin gamma subfamily C, 3 /FL=gb:L11373.1 gb:NM_002588.1 gb:AF152337.1 NM_002588 protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 4 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 6 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 1 /// protocadherin gamma subfamily B, 2 /// protocadherin gamma subfamily B, 3 /// protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5 /// protocadherin gamma subfamily B, 6 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily C, 3 /// protocadherin gamma subfamily C, 4 /// protocadherin gamma subfamily C, 5 PCDHGA1 /// PCDHGA10 /// PCDHGA11 /// PCDHGA12 /// PCDHGA2 /// PCDHGA3 /// PCDHGA4 /// PCDHGA5 /// PCDHGA6 /// PCDHGA7 /// PCDHGA8 /// PCDHGA9 /// PCDHGB1 /// PCDHGB2 /// PCDHGB3 /// PCDHGB4 /// PCDHGB5 /// PCDHGB6 /// PCDHGB7 /// PCDHGC3 /// PCDHGC4 /// PCDHGC5 5098 /// 8641 /// 9708 /// 26025 /// 56097 /// 56098 /// 56099 /// 56100 /// 56101 /// 56102 /// 56103 /// 56104 /// 56105 /// 56106 /// 56107 /// 56108 /// 56109 /// 56110 /// 56111 /// 56112 /// 56113 /// 56114 NM_002588 /// NM_003735 /// NM_003736 /// NM_014004 /// NM_018912 /// NM_018913 /// NM_018914 /// NM_018915 /// NM_018916 /// NM_018917 /// NM_018918 /// NM_018919 /// NM_018920 /// NM_018921 /// NM_018922 /// NM_018923 /// NM_018924 /// NM_018925 /// NM_018926 /// NM_018927 /// NM_018928 /// NM_018929 /// NM_031993 /// NM_032009 /// NM_032011 /// NM_032053 /// NM_032054 /// NM_032086 /// NM_032087 /// NM_032088 /// NM_032089 /// NM_032090 /// NM_032091 /// NM_032092 /// NM_032094 /// NM_032095 /// NM_032096 /// NM_032097 /// NM_032098 /// NM_032099 /// NM_032100 /// NM_032101 /// NM_032402 /// NM_032403 /// NM_032406 /// NM_032407 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -57.97 299.09 -4.09 0.00 0.01 -4.47
202172_at 202172_at BG035116 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG035116 /FEA=EST /DB_XREF=gi:12428927 /DB_XREF=est:602324811F1 /CLONE=IMAGE:4412907 /UG=Hs.6557 zinc finger protein 161 /FL=gb:D28118.1 gb:NM_007146.1 BG035116 vascular endothelial zinc finger 1 VEZF1 7716 NM_007146 /// XM_005257643 /// XM_005257644 0001525 // angiogenesis // inferred from electronic annotation /// 0001885 // endothelial cell development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006968 // cellular defense response // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 43.65 100.35 4.09 0.00 0.01 -4.47
218231_at 218231_at NM_017567 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017567.1 /DEF=Homo sapiens N-Acetylglucosamine kinase (HSA242910), mRNA. /FEA=mRNA /GEN=HSA242910 /PROD=N-Acetylglucosamine kinase /DB_XREF=gi:8923736 /UG=Hs.7036 N-Acetylglucosamine kinase /FL=gb:BC001029.1 gb:BC005371.1 gb:NM_017567.1 NM_017567 N-acetylglucosamine kinase NAGK 55577 NM_017567 /// XM_005264412 /// XM_005264413 /// XM_005264415 /// XM_006712045 0006044 // N-acetylglucosamine metabolic process // inferred from electronic annotation /// 0006051 // N-acetylmannosamine metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019262 // N-acetylneuraminate catabolic process // inferred from electronic annotation /// 0019262 // N-acetylneuraminate catabolic process // traceable author statement /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0009384 // N-acylmannosamine kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045127 // N-acetylglucosamine kinase activity // inferred from direct assay 62.45 168.65 4.09 0.00 0.01 -4.47
204011_at 204011_at NM_005842 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005842.1 /DEF=Homo sapiens sprouty (Drosophila) homolog 2 (SPRY2), mRNA. /FEA=mRNA /GEN=SPRY2 /PROD=sprouty (Drosophila) homolog 2 /DB_XREF=gi:5032114 /UG=Hs.18676 sprouty (Drosophila) homolog 2 /FL=gb:AF039843.1 gb:NM_005842.1 NM_005842 sprouty homolog 2 (Drosophila) SPRY2 10253 NM_005842 /// XM_005266217 /// XM_006719752 /// XM_006719753 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0034261 // negative regulation of Ras GTPase activity // inferred from electronic annotation /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0046580 // negative regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0051387 // negative regulation of neurotrophin TRK receptor signaling pathway // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060437 // lung growth // inferred from electronic annotation /// 0060541 // respiratory system development // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030291 // protein serine/threonine kinase inhibitor activity // inferred by curator /// 0043539 // protein serine/threonine kinase activator activity // inferred from mutant phenotype 95.07 176.44 4.09 0.00 0.01 -4.47
217833_at 217833_at AL520908 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL520908 /FEA=EST /DB_XREF=gi:12784401 /DB_XREF=est:AL520908 /CLONE=CS0DB002YF01 (3 prime) /UG=Hs.155489 NS1-associated protein 1 /FL=gb:AF155568.1 gb:NM_006372.1 AL520908 synaptotagmin binding, cytoplasmic RNA interacting protein SYNCRIP 10492 NM_001159673 /// NM_001159674 /// NM_001159675 /// NM_001159676 /// NM_001159677 /// NM_001253771 /// NM_006372 /// XM_005248635 /// XM_005248636 /// XM_005248637 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity /// 0097452 // GAIT complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 45.05 138.78 4.09 0.00 0.01 -4.47
218459_at 218459_at NM_022371 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022371.1 /DEF=Homo sapiens ATP-dependant interferon response protein 1 (ADIR), mRNA. /FEA=mRNA /GEN=ADIR /PROD=ATP-dependant interferon response protein 1 /DB_XREF=gi:11641298 /UG=Hs.26267 ATP-dependant interferon response protein 1 /FL=gb:NM_022371.1 gb:BC001085.1 NM_022371 torsin family 3, member A TOR3A 64222 NM_022371 /// XM_006711485 0006200 // ATP catabolic process // inferred from direct assay /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay 43.92 81.06 4.08 0.00 0.01 -4.47
212635_at 212635_at AW161626 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW161626 /FEA=EST /DB_XREF=gi:6300659 /DB_XREF=est:au68b11.x1 /CLONE=IMAGE:2781405 /UG=Hs.21739 Homo sapiens mRNA; cDNA DKFZp586I1518 (from clone DKFZp586I1518) AW161626 transportin 1 TNPO1 3842 NM_002270 /// NM_153188 /// XM_005248500 /// XM_005248501 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 112.05 508.27 4.08 0.00 0.01 -4.47
203062_s_at 203062_s_at NM_014641 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014641.1 /DEF=Homo sapiens KIAA0170 gene product (KIAA0170), mRNA. /FEA=mRNA /GEN=KIAA0170 /PROD=KIAA0170 gene product /DB_XREF=gi:7661965 /UG=Hs.277585 KIAA0170 gene product /FL=gb:D79992.1 gb:NM_014641.1 NM_014641 mediator of DNA-damage checkpoint 1 MDC1 9656 NM_014641 /// XM_005249492 /// XM_005249493 /// XM_005249494 /// XM_005249497 /// XM_005249498 /// XM_005272909 /// XM_005272910 /// XM_005272911 /// XM_005272914 /// XM_005272915 /// XM_005274899 /// XM_005274900 /// XM_005274901 /// XM_005274904 /// XM_005274905 /// XM_005275065 /// XM_005275066 /// XM_005275067 /// XM_005275070 /// XM_005275071 /// XM_005275196 /// XM_005275198 /// XM_005275199 /// XM_005275200 /// XM_005275321 /// XM_005275322 /// XM_005275323 /// XM_005275326 /// XM_005275327 /// XM_005275492 /// XM_005275493 /// XM_005275494 /// XM_005275497 /// XM_005275498 /// XM_005275629 /// XM_005275630 /// XM_005275631 /// XM_005275634 /// XM_005275635 /// XM_006725856 0000724 // double-strand break repair via homologous recombination // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0031573 // intra-S DNA damage checkpoint // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0070975 // FHA domain binding // inferred from physical interaction 42.05 78.30 4.08 0.00 0.01 -4.47
221229_s_at 221229_s_at NM_017910 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017910.2 /DEF=Homo sapiens hypothetical protein FLJ20628 (FLJ20628), mRNA. /FEA=mRNA /GEN=FLJ20628 /PROD=hypothetical protein FLJ20628 /DB_XREF=gi:13435382 /FL=gb:NM_017910.2 NM_017910 tRNA methyltransferase 61 homolog B (S. cerevisiae) TRMT61B 55006 NM_017910 /// XM_005264393 /// XM_005264394 /// XM_006712037 /// XR_244945 0006464 // cellular protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0030488 // tRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0070901 // mitochondrial tRNA methylation // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0031515 // tRNA (m1A) methyltransferase complex // inferred from electronic annotation 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016429 // tRNA (adenine-N1-)-methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 54.70 77.58 4.07 0.00 0.01 -4.47
200963_x_at 200963_x_at NM_000993 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000993.1 /DEF=Homo sapiens ribosomal protein L31 (RPL31), mRNA. /FEA=mRNA /GEN=RPL31 /PROD=ribosomal protein L31 /DB_XREF=gi:4506632 /UG=Hs.184014 ribosomal protein L31 /FL=gb:NM_000993.1 NM_000993 ribosomal protein L31 RPL31 6160 NM_000993 /// NM_001098577 /// NM_001099693 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -900.50 3545.43 -4.07 0.00 0.01 -4.47
212950_at 212950_at BF941499 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF941499 /FEA=EST /DB_XREF=gi:12358819 /DB_XREF=est:nac74e09.x1 /CLONE=IMAGE:3439985 /UG=Hs.22039 KIAA0758 protein BF941499 G protein-coupled receptor 116 GPR116 221395 NM_001098518 /// NM_015234 /// XM_005248892 /// XM_005248893 /// XM_005248894 /// XM_005248895 0006112 // energy reserve metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0043129 // surfactant homeostasis // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -45.05 158.95 -4.07 0.00 0.01 -4.47
203059_s_at 203059_s_at NM_004670 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004670.1 /DEF=Homo sapiens 3-phosphoadenosine 5-phosphosulfate synthase 2 (PAPSS2), mRNA. /FEA=mRNA /GEN=PAPSS2 /PROD=3-prime-phosphoadenosine 5-prime-phosphosulfatesynthase 2 /DB_XREF=gi:4758879 /UG=Hs.274230 3-phosphoadenosine 5-phosphosulfate synthase 2 /FL=gb:AF150754.2 gb:AF313907.1 gb:AF091242.1 gb:NM_004670.1 gb:AF074331.1 gb:AF173365.1 NM_004670 3'-phosphoadenosine 5'-phosphosulfate synthase 2 PAPSS2 9060 NM_001015880 /// NM_004670 0000103 // sulfate assimilation // inferred from electronic annotation /// 0001501 // skeletal system development // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0050428 // 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process // traceable author statement /// 0060348 // bone development // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004020 // adenylylsulfate kinase activity // inferred from electronic annotation /// 0004781 // sulfate adenylyltransferase (ATP) activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from sequence or structural similarity -90.30 206.62 -4.07 0.00 0.01 -4.47
201607_at 201607_at AI694451 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI694451 /FEA=EST /DB_XREF=gi:4971791 /DB_XREF=est:wd83h06.x1 /CLONE=IMAGE:2338235 /UG=Hs.172589 nuclear phosphoprotein similar to S. cerevisiae PWP1 /FL=gb:BC001652.1 gb:L07758.1 gb:NM_007062.1 AI694451 PWP1 homolog (S. cerevisiae) PWP1 11137 NM_007062 0006351 // transcription, DNA-templated // traceable author statement 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 43.10 116.48 4.07 0.00 0.01 -4.47
218611_at 218611_at NM_016545 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016545.1 /DEF=Homo sapiens hypothetical protein SBBI48 (LOC51278), mRNA. /FEA=mRNA /GEN=LOC51278 /PROD=hypothetical protein SBBI48 /DB_XREF=gi:7706080 /UG=Hs.15725 hypothetical protein SBBI48 /FL=gb:BC000128.2 gb:AF178984.1 gb:NM_016545.1 NM_016545 immediate early response 5 IER5 51278 NM_016545 -96.22 186.89 -4.07 0.00 0.01 -4.47
209029_at 209029_at AF193844 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF193844.1 /DEF=Homo sapiens COP9 complex subunit 7a mRNA, complete cds. /FEA=mRNA /PROD=COP9 complex subunit 7a /DB_XREF=gi:6120134 /UG=Hs.3758 COP9 complex subunit 7a /FL=gb:AB033603.1 gb:AF193844.1 gb:AF210052.1 gb:NM_016319.1 AF193844 COP9 signalosome subunit 7A COPS7A 50813 NM_001164093 /// NM_001164094 /// NM_001164095 /// NM_016319 /// XM_005253694 /// XM_005253695 0010388 // cullin deneddylation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // COP9 signalosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 52.77 177.94 4.07 0.00 0.01 -4.47
218235_s_at 218235_s_at NM_016037 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016037.1 /DEF=Homo sapiens CGI-94 protein (LOC51118), mRNA. /FEA=mRNA /GEN=LOC51118 /PROD=CGI-94 protein /DB_XREF=gi:7705808 /UG=Hs.111449 CGI-94 protein /FL=gb:BC005182.1 gb:AF151852.1 gb:NM_016037.1 gb:AF067802.1 NM_016037 UTP11-like, U3 small nucleolar ribonucleoprotein (yeast) UTP11L 51118 NM_016037 0006364 // rRNA processing // not recorded /// 0007399 // nervous system development // inferred from mutant phenotype /// 0042274 // ribosomal small subunit biogenesis // not recorded /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // inferred from mutant phenotype /// 0097194 // execution phase of apoptosis // inferred from mutant phenotype /// 2001272 // positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis // inferred by curator 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0032040 // small-subunit processome // not recorded 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 46.05 166.62 4.07 0.00 0.01 -4.47
216321_s_at 216321_s_at X03348 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X03348.1 /DEF=Human mRNA for beta-glucocorticoid receptor (clone OB10). /FEA=mRNA /PROD=beta-glucocorticoid receptor /DB_XREF=gi:31681 /UG=Hs.75772 nuclear receptor subfamily 3, group C, member 1 X03348 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) NR3C1 2908 NM_000176 /// NM_001018074 /// NM_001018075 /// NM_001018076 /// NM_001018077 /// NM_001020825 /// NM_001024094 /// NM_001204258 /// NM_001204259 /// NM_001204260 /// NM_001204261 /// NM_001204262 /// NM_001204263 /// NM_001204264 /// NM_001204265 /// XM_005268419 /// XM_005268420 /// XM_005268421 /// XM_005268422 /// XM_005268423 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0031946 // regulation of glucocorticoid biosynthetic process // inferred from electronic annotation /// 0042921 // glucocorticoid receptor signaling pathway // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0043402 // glucocorticoid mediated signaling pathway // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004883 // glucocorticoid receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -113.45 91.73 -4.06 0.00 0.01 -4.47
218137_s_at 218137_s_at NM_021940 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021940.1 /DEF=Homo sapiens hypothetical protein FLJ13159 (FLJ13159), mRNA. /FEA=mRNA /GEN=FLJ13159 /PROD=hypothetical protein FLJ13159 /DB_XREF=gi:11345477 /UG=Hs.4273 hypothetical protein FLJ13159 /FL=gb:NM_021940.1 NM_021940 small ArfGAP 1 SMAP1 60682 NM_001044305 /// NM_001281439 /// NM_001281440 /// NM_021940 /// XM_005248760 /// XM_006715547 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // inferred from electronic annotation /// 2000369 // regulation of clathrin-mediated endocytosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -76.35 254.68 -4.06 0.00 0.01 -4.47
202509_s_at 202509_s_at AI862445 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI862445 /FEA=EST /DB_XREF=gi:5526552 /DB_XREF=est:td16e10.x1 /CLONE=IMAGE:2075850 /UG=Hs.101382 tumor necrosis factor, alpha-induced protein 2 /FL=gb:M92357.1 gb:NM_006291.1 AI862445 tumor necrosis factor, alpha-induced protein 2 TNFAIP2 7127 NM_006291 /// XM_006720243 0001525 // angiogenesis // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0000145 // exocyst // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement -47.22 43.51 -4.06 0.00 0.01 -4.47
204030_s_at 204030_s_at NM_014575 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014575.1 /DEF=Homo sapiens schwannomin interacting protein 1 (SCHIP-1), mRNA. /FEA=mRNA /GEN=SCHIP-1 /PROD=schwannomin interacting protein 1 /DB_XREF=gi:7657539 /UG=Hs.61490 schwannomin interacting protein 1 /FL=gb:AF145713.1 gb:NM_014575.1 NM_014575 IQCJ-SCHIP1 readthrough /// schwannomin interacting protein 1 IQCJ-SCHIP1 /// SCHIP1 29970 /// 100505385 NM_001197107 /// NM_001197108 /// NM_001197109 /// NM_001197113 /// NM_001197114 /// NM_014575 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 113.78 354.04 4.06 0.00 0.01 -4.47
208394_x_at 208394_x_at NM_007036 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007036.2 /DEF=Homo sapiens endothelial cell-specific molecule 1 (ESM1), mRNA. /FEA=mRNA /GEN=ESM1 /PROD=endothelial cell-specific molecule 1 precursor /DB_XREF=gi:13259505 /UG=Hs.41716 endothelial cell-specific molecule 1 /FL=gb:NM_007036.2 NM_007036 endothelial cell-specific molecule 1 ESM1 11082 NM_001135604 /// NM_007036 0001525 // angiogenesis // inferred from expression pattern /// 0001558 // regulation of cell growth // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 1902204 // positive regulation of hepatocyte growth factor receptor signaling pathway // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 0005171 // hepatocyte growth factor receptor binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from physical interaction /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008083 // growth factor activity // non-traceable author statement -173.70 347.27 -4.06 0.00 0.01 -4.47
212214_at 212214_at BF439570 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF439570 /FEA=EST /DB_XREF=gi:11452177 /DB_XREF=est:nab69b11.x1 /CLONE=IMAGE:3272805 /UG=Hs.147946 optic atrophy 1 (autosomal dominant) BF439570 optic atrophy 1 (autosomal dominant) OPA1 4976 NM_015560 /// NM_130831 /// NM_130832 /// NM_130833 /// NM_130834 /// NM_130835 /// NM_130836 /// NM_130837 0000266 // mitochondrial fission // traceable author statement /// 0001843 // neural tube closure // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0007005 // mitochondrion organization // non-traceable author statement /// 0007007 // inner mitochondrial membrane organization // inferred from direct assay /// 0007601 // visual perception // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // inferred from direct assay /// 0008053 // mitochondrial fusion // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0019896 // axon transport of mitochondrion // traceable author statement /// 0050896 // response to stimulus // inferred from electronic annotation /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0090398 // cellular senescence // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // non-traceable author statement /// 0005758 // mitochondrial intermembrane space // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0030425 // dendrite // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 42.80 105.70 4.06 0.00 0.01 -4.47
212544_at 212544_at AI131008 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI131008 /FEA=EST /DB_XREF=gi:3601024 /DB_XREF=est:qc15h06.x1 /CLONE=IMAGE:1709723 /UG=Hs.2210 thyroid hormone receptor interactor 3 AI131008 zinc finger, HIT-type containing 3 ZNHIT3 9326 NM_001033577 /// NM_001281432 /// NM_001281433 /// NM_001281434 /// NM_004773 /// NR_104009 /// NR_104010 /// NR_104011 0006355 // regulation of transcription, DNA-templated // traceable author statement 0005622 // intracellular // non-traceable author statement 0046872 // metal ion binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // traceable author statement -35.45 196.97 -4.05 0.00 0.01 -4.47
212769_at 212769_at AI567426 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI567426 /FEA=EST /DB_XREF=gi:4525878 /DB_XREF=est:tn38b04.x1 /CLONE=IMAGE:2169871 /UG=Hs.31305 KIAA1547 protein AI567426 transducin-like enhancer of split 3 TLE3 7090 NM_001105192 /// NM_001282979 /// NM_001282980 /// NM_001282981 /// NM_001282982 /// NM_005078 /// NM_020908 /// XM_005254622 /// XM_005254623 /// XM_005254625 /// XM_005254628 /// XM_005254633 /// XM_006720662 /// XM_006720663 /// XM_006720664 /// XM_006720665 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0009887 // organ morphogenesis // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement 0005515 // protein binding // inferred from physical interaction -39.75 43.45 -4.05 0.00 0.01 -4.47
219420_s_at 219420_s_at NM_023077 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023077.1 /DEF=Homo sapiens hypothetical protein FLJ12439 (FLJ12439), mRNA. /FEA=mRNA /GEN=FLJ12439 /PROD=hypothetical protein FLJ12439 /DB_XREF=gi:12751490 /UG=Hs.164371 hypothetical protein FLJ12439 /FL=gb:NM_023077.1 NM_023077 cytochrome c oxidase assembly factor 7 (putative) COA7 65260 NM_023077 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 58.95 62.42 4.05 0.00 0.01 -4.47
201545_s_at 201545_s_at NM_004643 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004643.1 /DEF=Homo sapiens poly(A)-binding protein, nuclear 1 (PABPN1), mRNA. /FEA=mRNA /GEN=PABPN1 /PROD=poly(A)-binding protein, nuclear 1 /DB_XREF=gi:4758875 /UG=Hs.117176 poly(A)-binding protein, nuclear 1 /FL=gb:NM_004643.1 NM_004643 BCL2L2-PABPN1 readthrough /// poly(A) binding protein, nuclear 1 BCL2L2-PABPN1 /// PABPN1 8106 /// 100529063 NM_001199864 /// NM_004643 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // traceable author statement /// 0019054 // modulation by virus of host process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0046778 // modification by virus of host mRNA processing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 55.82 130.81 4.05 0.00 0.01 -4.47
220926_s_at 220926_s_at NM_025191 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025191.1 /DEF=Homo sapiens hypothetical protein FLJ13033 (FLJ13033), mRNA. /FEA=mRNA /GEN=FLJ13033 /PROD=hypothetical protein FLJ13033 /DB_XREF=gi:13376781 /UG=Hs.301997 hypothetical protein FLJ13033 /FL=gb:NM_025191.1 NM_025191 ER degradation enhancer, mannosidase alpha-like 3 EDEM3 80267 NM_025191 /// XM_005245499 0006457 // protein folding // traceable author statement /// 0006516 // glycoprotein catabolic process // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004569 // glycoprotein endo-alpha-1,2-mannosidase activity // inferred from electronic annotation /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 56.95 64.70 4.05 0.00 0.01 -4.47
212741_at 212741_at AA923354 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA923354 /FEA=EST /DB_XREF=gi:3070663 /DB_XREF=est:ol46a12.s1 /CLONE=IMAGE:1526494 /UG=Hs.183109 monoamine oxidase A AA923354 monoamine oxidase A MAOA 4128 NM_000240 /// NM_001270458 0006576 // cellular biogenic amine metabolic process // traceable author statement /// 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0007610 // behavior // traceable author statement /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // traceable author statement /// 0042420 // dopamine catabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0008131 // primary amine oxidase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation 50.12 134.89 4.04 0.00 0.01 -4.47
203273_s_at 203273_s_at NM_007275 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007275.1 /DEF=Homo sapiens lung cancer candidate (FUS1), mRNA. /FEA=mRNA /GEN=FUS1 /PROD=lung cancer candidate /DB_XREF=gi:6005759 /UG=Hs.8186 lung cancer candidate /FL=gb:AF055479.1 gb:NM_007275.1 NM_007275 tumor suppressor candidate 2 TUSC2 11334 NM_007275 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007267 // cell-cell signaling // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0032618 // interleukin-15 production // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0071609 // chemokine (C-C motif) ligand 5 production // inferred from electronic annotation /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 46.65 54.95 4.04 0.00 0.01 -4.47
213063_at 213063_at BF970253 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF970253 /FEA=EST /DB_XREF=gi:12337468 /DB_XREF=est:602273505F1 /CLONE=IMAGE:4361569 /UG=Hs.173684 Homo sapiens mRNA; cDNA DKFZp762G207 (from clone DKFZp762G207) BF970253 zinc finger CCCH-type containing 14 ZC3H14 79882 NM_001160103 /// NM_001160104 /// NM_024824 /// NM_207660 /// NM_207661 /// NM_207662 /// XM_005268067 /// XM_005268068 /// XM_005268069 /// XM_005268070 /// XM_005268071 /// XM_005268073 /// XM_006720257 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 43.35 79.97 4.04 0.00 0.01 -4.47
35666_at 35666_at U38276 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U38276:Human semaphorin III family homolog mRNA, complete cds /cds=(315,2576) /gb=U38276 /gi=1061350 /ug=Hs.32981 /len=3534 U38276 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F SEMA3F 6405 NM_004186 /// XM_005265381 /// XM_005265382 /// XM_006713289 /// XM_006713290 0001755 // neural crest cell migration // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay /// 0021675 // nerve development // inferred from sequence or structural similarity /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048846 // axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0061549 // sympathetic ganglion development // inferred from sequence or structural similarity /// 0097490 // sympathetic neuron projection extension // inferred from sequence or structural similarity /// 0097491 // sympathetic neuron projection guidance // inferred from sequence or structural similarity /// 1902285 // semaphorin-plexin signaling pathway involved in neuron projection guidance // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0045499 // chemorepellent activity // inferred from direct assay 101.20 222.25 4.04 0.00 0.01 -4.47
204510_at 204510_at NM_003503 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003503.2 /DEF=Homo sapiens CDC7 (cell division cycle 7, S. cerevisiae, homolog)-like 1 (CDC7L1), mRNA. /FEA=mRNA /GEN=CDC7L1 /PROD=CDC7-like 1 /DB_XREF=gi:11038647 /UG=Hs.28853 CDC7 (cell division cycle 7, S. cerevisiae, homolog)-like 1 /FL=gb:NM_003503.2 gb:AB003698.1 gb:AF005209.1 gb:AF015592.1 NM_003503 cell division cycle 7 CDC7 8317 NM_001134419 /// NM_001134420 /// NM_003503 /// XM_005271241 /// XM_005271244 /// XM_005271245 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010571 // positive regulation of nuclear cell cycle DNA replication // inferred from mutant phenotype /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044770 // cell cycle phase transition // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0045171 // intercellular bridge // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 36.98 55.81 4.04 0.00 0.01 -4.47
221014_s_at 221014_s_at NM_031296 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031296.1 /DEF=Homo sapiens hypothetical protein DKFZp434G099 (DKFZP434G099), mRNA. /FEA=mRNA /GEN=DKFZP434G099 /PROD=hypothetical protein DKFZp434G099 /DB_XREF=gi:13786128 /FL=gb:NM_031296.1 NM_031296 RAB33B, member RAS oncogene family RAB33B 83452 NM_031296 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 2000156 // regulation of retrograde vesicle-mediated transport, Golgi to ER // inferred from mutant phenotype /// 2000785 // regulation of autophagic vacuole assembly // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005796 // Golgi lumen // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 91.23 74.04 4.04 0.00 0.01 -4.47
222192_s_at 222192_s_at AK021672 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK021672.1 /DEF=Homo sapiens cDNA FLJ11610 fis, clone HEMBA1003985. /FEA=mRNA /DB_XREF=gi:10432904 /UG=Hs.63300 hypothetical protein FLJ21820 AK021672 chromosome 2 open reading frame 43 C2orf43 60526 NM_001282719 /// NM_001282720 /// NM_001282721 /// NM_001282722 /// NM_001282723 /// NM_001282724 /// NM_021925 /// NR_104233 /// XR_426990 /// XR_426991 /// XR_426992 39.88 92.16 4.04 0.00 0.01 -4.47
204594_s_at 204594_s_at NM_013298 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013298.1 /DEF=Homo sapiens hypothetical protein (HSU79252), mRNA. /FEA=mRNA /GEN=HSU79252 /PROD=hypothetical protein /DB_XREF=gi:9558736 /UG=Hs.240062 hypothetical protein /FL=gb:U79252.1 gb:NM_013298.1 NM_013298 mitochondrial elongation factor 1 MIEF1 54471 NM_019008 /// XM_005261652 0000266 // mitochondrial fission // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // inferred from mutant phenotype /// 0090141 // positive regulation of mitochondrial fission // inferred from direct assay /// 0090141 // positive regulation of mitochondrial fission // traceable author statement /// 0090314 // positive regulation of protein targeting to membrane // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005777 // peroxisome // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019003 // GDP binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay 44.90 104.10 4.04 0.00 0.01 -4.47
202020_s_at 202020_s_at NM_006055 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006055.1 /DEF=Homo sapiens LanC (bacterial lantibiotic synthetase component C)-like 1 (LANCL1), mRNA. /FEA=mRNA /GEN=LANCL1 /PROD=lanthionine synthetase C-like protein 1 /DB_XREF=gi:5174444 /UG=Hs.13351 LanC (bacterial lantibiotic synthetase component C)-like 1 /FL=gb:NM_006055.1 NM_006055 LanC lantibiotic synthetase component C-like 1 (bacterial) LANCL1 10314 NM_001136574 /// NM_001136575 /// NM_006055 /// XM_005246243 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0043295 // glutathione binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay 87.90 121.70 4.04 0.00 0.01 -4.47
206557_at 206557_at NM_024924 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024924.1 /DEF=Homo sapiens hypothetical protein FLJ12985 (FLJ12985), mRNA. /FEA=mRNA /GEN=FLJ12985 /PROD=hypothetical protein FLJ12985 /DB_XREF=gi:13430873 /UG=Hs.270435 hypothetical protein FLJ12985 /FL=gb:NM_024924.1 NM_024924 zinc finger protein 702, pseudogene ZNF702P 79986 NM_024924 /// NR_003578 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 33.68 56.81 4.03 0.00 0.01 -4.47
202375_at 202375_at NM_014822 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014822.1 /DEF=Homo sapiens SEC24 (S. cerevisiae) related gene family, member D (SEC24D), mRNA. /FEA=mRNA /GEN=SEC24D /PROD=SEC24 (S. cerevisiae) related gene family,member D /DB_XREF=gi:7662658 /UG=Hs.19822 SEC24 (S. cerevisiae) related gene family, member D /FL=gb:AB018298.1 gb:AF130464.2 gb:NM_014822.1 NM_014822 SEC24 family member D SEC24D 9871 NM_014822 /// XM_005263378 /// XM_005263379 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // non-traceable author statement /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030127 // COPII vesicle coat // non-traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 74.50 137.22 4.03 0.00 0.01 -4.47
212290_at 212290_at AA527433 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA527433 /FEA=EST /DB_XREF=gi:2269502 /DB_XREF=est:ng41b03.s1 /CLONE=IMAGE:937325 /UG=Hs.14846 Homo sapiens mRNA; cDNA DKFZp564D016 (from clone DKFZp564D016) AA527433 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 SLC7A1 6541 NM_003045 /// XM_005266507 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // non-traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0015809 // arginine transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation -213.68 285.46 -4.03 0.00 0.01 -4.47
201941_at 201941_at BE349147 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE349147 /FEA=EST /DB_XREF=gi:9261086 /DB_XREF=est:ht51f05.x1 /CLONE=IMAGE:3150273 /UG=Hs.5057 carboxypeptidase D /FL=gb:U65090.1 gb:D85390.1 gb:NM_001304.2 BE349147 carboxypeptidase D CPD 1362 NM_001199775 /// NM_001304 0006508 // proteolysis // inferred from electronic annotation 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -108.88 316.41 -4.03 0.00 0.01 -4.47
201776_s_at 201776_s_at AK001487 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001487.1 /DEF=Homo sapiens cDNA FLJ10625 fis, clone NT2RP2005540, highly similar to Homo sapiens mRNA for KIAA0494 protein. /FEA=mRNA /DB_XREF=gi:7022773 /UG=Hs.62515 KIAA0494 gene product /FL=gb:BC002525.1 gb:AB007963.1 gb:NM_014774.1 AK001487 EF-hand calcium binding domain 14 EFCAB14 9813 NM_014774 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 83.40 120.28 4.03 0.00 0.01 -4.47
201157_s_at 201157_s_at AF020500 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF020500.1 /DEF=Homo sapiens myristoyl CoA:protein N-myristoyltransferase mRNA, complete cds. /FEA=CDS /PROD=myristoyl CoA:protein N-myristoyltransferase /DB_XREF=gi:2760893 /UG=Hs.111039 N-myristoyltransferase 1 /FL=gb:NM_021079.1 gb:AF020500.1 gb:AF043324.1 AF020500 N-myristoyltransferase 1 NMT1 4836 NM_021079 /// XM_005257421 /// XM_005257422 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006498 // N-terminal protein lipidation // non-traceable author statement /// 0006499 // N-terminal protein myristoylation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0009249 // protein lipoylation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0003824 // catalytic activity // traceable author statement /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019107 // myristoyltransferase activity // inferred from electronic annotation -69.43 310.44 -4.03 0.00 0.01 -4.47
208843_s_at 208843_s_at BC001408 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001408.1 /DEF=Homo sapiens, clone MGC:1233, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:1233) /DB_XREF=gi:12655112 /UG=Hs.6880 DKFZP434D156 protein /FL=gb:BC001408.1 BC001408 golgi reassembly stacking protein 2, 55kDa GORASP2 26003 NM_001201428 /// NM_015530 /// XM_006712408 0000278 // mitotic cell cycle // traceable author statement /// 0006996 // organelle organization // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction 46.27 195.34 4.03 0.00 0.01 -4.47
220934_s_at 220934_s_at NM_024084 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024084.1 /DEF=Homo sapiens hypothetical protein MGC3196 (MGC3196), mRNA. /FEA=mRNA /GEN=MGC3196 /PROD=hypothetical protein MGC3196 /DB_XREF=gi:13129079 /UG=Hs.309161 hypothetical protein MGC3196 /FL=gb:BC001204.1 gb:NM_024084.1 NM_024084 transmembrane protein 223 TMEM223 79064 NM_001080501 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 50.40 83.58 4.03 0.00 0.01 -4.47
217750_s_at 217750_s_at NM_023079 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023079.1 /DEF=Homo sapiens hypothetical protein FLJ13855 (FLJ13855), mRNA. /FEA=mRNA /GEN=FLJ13855 /PROD=hypothetical protein FLJ13855 /DB_XREF=gi:12751494 /UG=Hs.168232 hypothetical protein FLJ13855 /FL=gb:NM_023079.1 NM_023079 ubiquitin-conjugating enzyme E2Z UBE2Z 65264 NM_023079 0006915 // apoptotic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -128.98 368.74 -4.02 0.00 0.01 -4.47
201653_at 201653_at NM_005776 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005776.1 /DEF=Homo sapiens cornichon-like (CNIL), mRNA. /FEA=mRNA /GEN=CNIL /PROD=cornichon-like /DB_XREF=gi:5031638 /UG=Hs.201673 cornichon-like /FL=gb:AF104398.1 gb:AF070654.1 gb:AF031379.1 gb:NM_005776.1 NM_005776 cornichon family AMPA receptor auxiliary protein 1 CNIH1 10175 NM_001009551 /// NM_005776 /// XR_245653 0006810 // transport // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -116.73 761.61 -4.02 0.00 0.01 -4.47
202909_at 202909_at NM_014805 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014805.1 /DEF=Homo sapiens KIAA0766 gene product (KIAA0766), mRNA. /FEA=mRNA /GEN=KIAA0766 /PROD=KIAA0766 gene product /DB_XREF=gi:7662293 /UG=Hs.28020 KIAA0766 gene product /FL=gb:AF059751.1 gb:AB018309.1 gb:NM_014805.1 NM_014805 EPM2A (laforin) interacting protein 1 EPM2AIP1 9852 NM_014805 0005783 // endoplasmic reticulum // inferred from electronic annotation 54.10 60.40 4.02 0.00 0.01 -4.47
209013_x_at 209013_x_at AF091395 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF091395.1 /DEF=Homo sapiens Trio isoform mRNA, complete cds. /FEA=mRNA /PROD=Trio isoform /DB_XREF=gi:3644047 /UG=Hs.171957 triple functional domain (PTPRF interacting) /FL=gb:AF091395.1 AF091395 trio Rho guanine nucleotide exchange factor TRIO 7204 NM_007118 /// XM_006714495 /// XR_241714 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043087 // regulation of GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation -315.00 364.50 -4.02 0.00 0.01 -4.47
210580_x_at 210580_x_at L25275 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L25275.1 /DEF=Human estrogen sulfotransferase mRNA, complete cds. /FEA=mRNA /PROD=estrogen sulfotransferase /DB_XREF=gi:463124 /UG=Hs.274614 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 /FL=gb:L25275.1 L25275 sulfotransferase 1A3/1A4-like /// SLX1A-SULT1A3 readthrough (NMD candidate) /// SLX1B-SULT1A4 readthrough (NMD candidate) /// sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 /// sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 LOC101929857 /// SLX1A-SULT1A3 /// SLX1B-SULT1A4 /// SULT1A3 /// SULT1A4 6818 /// 445329 /// 100526830 /// 100526831 /// 101929857 NM_001017387 /// NM_001017389 /// NM_001017390 /// NM_001017391 /// NM_003166 /// NM_177552 /// NR_037608 /// NR_037609 /// XM_005276506 /// XM_005276507 /// XM_006726621 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0009812 // flavonoid metabolic process // inferred from direct assay /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0051923 // sulfation // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0004062 // aryl sulfotransferase activity // traceable author statement /// 0008146 // sulfotransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation -51.47 131.86 -4.02 0.00 0.01 -4.47
213113_s_at 213113_s_at AI630178 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI630178 /FEA=EST /DB_XREF=gi:4681508 /DB_XREF=est:ad06a06.r1 /CLONE=ad06a06 (random) /UG=Hs.274453 hypothetical protein DKFZp762A227 AI630178 solute carrier family 43, member 3 SLC43A3 29015 NM_001278201 /// NM_001278206 /// NM_014096 /// NM_017611 /// NM_199329 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -71.83 226.34 -4.02 0.00 0.01 -4.47
220495_s_at 220495_s_at NM_024715 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024715.1 /DEF=Homo sapiens hypothetical protein FLJ22625 (FLJ22625), mRNA. /FEA=mRNA /GEN=FLJ22625 /PROD=hypothetical protein FLJ22625 /DB_XREF=gi:13376016 /UG=Hs.106534 hypothetical protein FLJ22625 /FL=gb:NM_024715.1 NM_024715 thioredoxin domain containing 15 TXNDC15 79770 NM_024715 0045454 // cell redox homeostasis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 55.78 154.21 4.02 0.00 0.01 -4.47
207390_s_at 207390_s_at NM_006932 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006932.1 /DEF=Homo sapiens smoothelin (SMTN), mRNA. /FEA=mRNA /GEN=SMTN /PROD=smoothelin /DB_XREF=gi:5902099 /UG=Hs.149098 smoothelin /FL=gb:NM_006932.1 NM_006932 smoothelin SMTN 6525 NM_001207017 /// NM_001207018 /// NM_006932 /// NM_134269 /// NM_134270 /// XM_006724298 /// XM_006724299 /// XM_006724300 /// XM_006724301 /// XM_006724302 /// XM_006724303 /// XM_006724304 /// XM_006724305 /// XM_006724306 /// XM_006724307 /// XR_430410 0006939 // smooth muscle contraction // traceable author statement /// 0007517 // muscle organ development // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // traceable author statement 96.40 194.38 4.02 0.00 0.01 -4.47
218710_at 218710_at NM_017735 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017735.1 /DEF=Homo sapiens hypothetical protein FLJ20272 (FLJ20272), mRNA. /FEA=mRNA /GEN=FLJ20272 /PROD=hypothetical protein FLJ20272 /DB_XREF=gi:8923244 /UG=Hs.26090 hypothetical protein FLJ20272 /FL=gb:BC001248.1 gb:NM_017735.1 NM_017735 tetratricopeptide repeat domain 27 TTC27 55622 NM_001193509 /// NM_017735 /// XM_005264416 0005515 // protein binding // inferred from electronic annotation -51.90 144.80 -4.02 0.00 0.01 -4.47
207253_s_at 207253_s_at NM_016936 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016936.1 /DEF=Homo sapiens ubinuclein 1 (UBN1), mRNA. /FEA=mRNA /GEN=UBN1 /PROD=ubinuclein 1 /DB_XREF=gi:9055373 /UG=Hs.21479 ubinuclein 1 /FL=gb:AF108460.1 gb:NM_016936.1 NM_016936 ubinuclein 1 UBN1 29855 NM_001079514 /// NM_001288656 /// NM_016936 /// XM_005255277 /// XM_005255278 /// XM_005255279 /// XM_005255280 /// XM_005255283 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0010923 // negative regulation of phosphatase activity // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 43.02 87.84 4.02 0.00 0.01 -4.47
201330_at 201330_at NM_002887 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002887.1 /DEF=Homo sapiens arginyl-tRNA synthetase (RARS), mRNA. /FEA=mRNA /GEN=RARS /PROD=arginyl-tRNA synthetase /DB_XREF=gi:4506428 /UG=Hs.180832 arginyl-tRNA synthetase /FL=gb:BC000528.1 gb:NM_002887.1 NM_002887 arginyl-tRNA synthetase RARS 5917 NM_002887 /// XM_005265957 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006420 // arginyl-tRNA aminoacylation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004814 // arginine-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0034618 // arginine binding // inferred from electronic annotation 132.35 409.23 4.02 0.00 0.01 -4.47
201095_at 201095_at NM_004394 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004394.1 /DEF=Homo sapiens death-associated protein (DAP), mRNA. /FEA=mRNA /GEN=DAP /PROD=death-associated protein /DB_XREF=gi:4758119 /UG=Hs.75189 death-associated protein /FL=gb:BC002726.1 gb:NM_004394.1 NM_004394 death-associated protein DAP 1611 NM_001291963 /// NM_004394 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from genetic interaction /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0010507 // negative regulation of autophagy // inferred from mutant phenotype /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0034198 // cellular response to amino acid starvation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0097190 // apoptotic signaling pathway // inferred from mutant phenotype 0070513 // death domain binding // inferred from physical interaction 104.97 282.54 4.01 0.00 0.01 -4.47
201002_s_at 201002_s_at U39361 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U39361.1 /DEF=Homo sapiens DNA-binding protein (CROC-1B) mRNA, complete cds. /FEA=mRNA /GEN=CROC-1B /PROD=DNA-binding protein /DB_XREF=gi:1066081 /UG=Hs.75875 ubiquitin-conjugating enzyme E2 variant 1 /FL=gb:U39361.1 gb:NM_003349.2 gb:BC000468.1 U39361 transmembrane protein 189 /// TMEM189-UBE2V1 readthrough /// ubiquitin-conjugating enzyme E2 variant 1 /// ubiquitin-conjugating enzyme E2 variant 2 TMEM189 /// TMEM189-UBE2V1 /// UBE2V1 /// UBE2V2 7335 /// 7336 /// 387521 /// 387522 NM_001032288 /// NM_001162505 /// NM_001257393 /// NM_001257394 /// NM_001257395 /// NM_001257396 /// NM_001257397 /// NM_001257398 /// NM_001257399 /// NM_001282575 /// NM_001282576 /// NM_001282577 /// NM_001282578 /// NM_001282579 /// NM_001282580 /// NM_003349 /// NM_003350 /// NM_021988 /// NM_022442 /// NM_199129 /// NM_199144 /// NM_199203 /// NR_027889 /// NR_047554 /// NR_104218 /// XM_005251300 0000209 // protein polyubiquitination // traceable author statement /// 0000729 // DNA double-strand break processing // inferred from mutant phenotype /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0006282 // regulation of DNA repair // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0016567 // protein ubiquitination // traceable author statement /// 0030154 // cell differentiation // non-traceable author statement /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051965 // positive regulation of synapse assembly // inferred from electronic annotation /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031371 // ubiquitin conjugating enzyme complex // inferred from direct assay /// 0031372 // UBC13-MMS2 complex // inferred from direct assay /// 0035370 // UBC13-UEV1A complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 141.68 612.76 4.01 0.00 0.01 -4.47
44783_s_at 44783_s_at R61374 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. R61374:yh15e02.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-37665 /clone_end=3' /gb=R61374 /gi=832069 /ug=Hs.234434 /len=434 R61374 hes-related family bHLH transcription factor with YRPW motif 1 HEY1 23462 NM_001040708 /// NM_001282851 /// NM_012258 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from expression pattern /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0002076 // osteoblast development // inferred from electronic annotation /// 0003184 // pulmonary valve morphogenesis // inferred from sequence or structural similarity /// 0003190 // atrioventricular valve formation // inferred from sequence or structural similarity /// 0003198 // epithelial to mesenchymal transition involved in endocardial cushion formation // inferred from sequence or structural similarity /// 0003199 // endocardial cushion to mesenchymal transition involved in heart valve formation // inferred from electronic annotation /// 0003203 // endocardial cushion morphogenesis // inferred from sequence or structural similarity /// 0003208 // cardiac ventricle morphogenesis // inferred from sequence or structural similarity /// 0003222 // ventricular trabecula myocardium morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from direct assay /// 0007219 // Notch signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0035912 // dorsal aorta morphogenesis // inferred from sequence or structural similarity /// 0036304 // umbilical cord morphogenesis // inferred from sequence or structural similarity /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0060347 // heart trabecula formation // inferred from sequence or structural similarity /// 0060411 // cardiac septum morphogenesis // inferred from sequence or structural similarity /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060716 // labyrinthine layer blood vessel development // inferred from sequence or structural similarity /// 0060840 // artery development // inferred from electronic annotation /// 0060842 // arterial endothelial cell differentiation // inferred from sequence or structural similarity /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0071385 // cellular response to glucocorticoid stimulus // inferred from electronic annotation /// 2000678 // negative regulation of transcription regulatory region DNA binding // inferred from direct assay /// 2000820 // negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation // inferred from direct assay /// 2001212 // regulation of vasculogenesis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0000983 // RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0000988 // protein binding transcription factor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // non-traceable author statement /// 0035939 // microsatellite binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -42.15 109.47 -4.01 0.00 0.01 -4.47
209795_at 209795_at L07555 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L07555.1 /DEF=Homo sapiens early activation antigen CD69 mRNA, complete cds. /FEA=mRNA /PROD=early activation antigen CD69 /DB_XREF=gi:291897 /UG=Hs.82401 CD69 antigen (p60, early T-cell activation antigen) /FL=gb:L07555.1 gb:NM_001781.1 L07555 CD69 molecule CD69 969 NM_001781 /// NR_026671 /// NR_026672 0007165 // signal transduction // traceable author statement /// 0035690 // cellular response to drug // inferred from electronic annotation 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation -40.65 33.00 -4.01 0.00 0.01 -4.47
209585_s_at 209585_s_at AF084943 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF084943.1 /DEF=Homo sapiens multiple inositol polyphosphate phosphatase mRNA, complete cds. /FEA=mRNA /PROD=multiple inositol polyphosphate phosphatase /DB_XREF=gi:4191339 /UG=Hs.95907 multiple inositol polyphosphate phosphatase 1 /FL=gb:AF046914.1 gb:AF084943.1 gb:NM_004897.1 AF084943 multiple inositol-polyphosphate phosphatase 1 MINPP1 9562 NM_001178117 /// NM_001178118 /// NM_004897 /// XM_006718078 0001503 // ossification // non-traceable author statement /// 0006797 // polyphosphate metabolic process // traceable author statement /// 0016311 // dephosphorylation // inferred from direct assay /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0030282 // bone mineralization // non-traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0004446 // inositol-hexakisphosphate phosphatase activity // inferred from electronic annotation /// 0008969 // phosphohistidine phosphatase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0034417 // bisphosphoglycerate 3-phosphatase activity // inferred from direct assay /// 0052826 // inositol hexakisphosphate 2-phosphatase activity // inferred from electronic annotation 36.42 115.54 4.01 0.00 0.01 -4.47
202620_s_at 202620_s_at NM_000935 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000935.1 /DEF=Homo sapiens procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2 (PLOD2), mRNA. /FEA=mRNA /GEN=PLOD2 /PROD=procollagen-lysine, 2-oxoglutarate 5-dioxygenase(lysine hydroxylase) 2 /DB_XREF=gi:4505888 /UG=Hs.41270 procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2 /FL=gb:U84573.1 gb:NM_000935.1 NM_000935 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 PLOD2 5352 NM_000935 /// NM_182943 /// XM_005247535 /// XM_005247536 0001666 // response to hypoxia // inferred from expression pattern /// 0006464 // cellular protein modification process // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005581 // collagen trimer // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005506 // iron ion binding // inferred from electronic annotation /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -217.72 770.09 -4.01 0.00 0.01 -4.47
203341_at 203341_at NM_005760 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005760.1 /DEF=Homo sapiens CCAAT-box-binding transcription factor (CBF2), mRNA. /FEA=mRNA /GEN=CBF2 /PROD=CCAAT-box-binding transcription factor /DB_XREF=gi:5031624 /UG=Hs.184760 CCAAT-box-binding transcription factor /FL=gb:M37197.1 gb:NM_005760.1 NM_005760 CCAAT/enhancer binding protein (C/EBP), zeta CEBPZ 10153 NM_005760 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 34.10 75.72 4.00 0.00 0.01 -4.47
219256_s_at 219256_s_at NM_018986 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018986.1 /DEF=Homo sapiens hypothetical protein (FLJ20356), mRNA. /FEA=mRNA /GEN=FLJ20356 /PROD=hypothetical protein /DB_XREF=gi:9506676 /UG=Hs.61053 hypothetical protein /FL=gb:NM_018986.1 NM_018986 SH3 domain and tetratricopeptide repeats 1 SH3TC1 54436 NM_018986 /// XM_005247974 /// XM_006713888 /// XM_006713889 /// XM_006713890 /// XM_006713891 /// XR_241652 /// XR_427478 0005515 // protein binding // inferred from electronic annotation -61.90 249.47 -4.00 0.00 0.01 -4.47
206861_s_at 206861_s_at NM_003663 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003663.1 /DEF=Homo sapiens CGG triplet repeat binding protein 1 (CGGBP1), mRNA. /FEA=mRNA /GEN=CGGBP1 /PROD=CGG triplet repeat binding protein 1 /DB_XREF=gi:4502790 /UG=Hs.86041 CGG triplet repeat binding protein 1 /FL=gb:NM_003663.1 NM_003663 CGG triplet repeat binding protein 1 CGGBP1 8545 NM_001008390 /// NM_001195308 /// NM_003663 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from mutant phenotype /// 0001227 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0001227 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from mutant phenotype /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement -57.13 243.79 -4.00 0.00 0.01 -4.47
212186_at 212186_at BE855983 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE855983 /FEA=EST /DB_XREF=gi:10368561 /DB_XREF=est:7f85g11.x1 /CLONE=IMAGE:3303812 /UG=Hs.7232 acetyl-Coenzyme A carboxylase alpha /FL=gb:NM_000664.1 gb:U19822.1 BE855983 acetyl-CoA carboxylase alpha ACACA 31 NM_000664 /// NM_198834 /// NM_198835 /// NM_198836 /// NM_198837 /// NM_198838 /// NM_198839 /// XM_005257266 /// XM_005257267 /// XM_005257268 /// XM_006721853 /// XM_006725320 /// XM_006725321 /// XM_006725322 /// XR_424818 /// XR_429952 /// XR_430795 /// XR_433374 0001894 // tissue homeostasis // inferred from electronic annotation /// 0006084 // acetyl-CoA metabolic process // inferred from sequence or structural similarity /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from sequence or structural similarity /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006768 // biotin metabolic process // traceable author statement /// 0006853 // carnitine shuttle // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0031325 // positive regulation of cellular metabolic process // traceable author statement /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044268 // multicellular organismal protein metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051289 // protein homotetramerization // inferred from sequence or structural similarity /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 2001295 // malonyl-CoA biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase activity // inferred from sequence or structural similarity /// 0003989 // acetyl-CoA carboxylase activity // traceable author statement /// 0004075 // biotin carboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 84.62 62.79 4.00 0.00 0.01 -4.47
212730_at 212730_at AK026420 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026420.1 /DEF=Homo sapiens cDNA: FLJ22767 fis, clone KAIA1191. /FEA=mRNA /DB_XREF=gi:10439281 /UG=Hs.10587 KIAA0353 protein AK026420 synemin, intermediate filament protein SYNM 23336 NM_015286 /// NM_145728 0045104 // intermediate filament cytoskeleton organization // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from direct assay /// 0005882 // intermediate filament // non-traceable author statement /// 0005912 // adherens junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043034 // costamere // inferred from direct assay /// 0060053 // neurofilament cytoskeleton // traceable author statement 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // inferred from direct assay /// 0017166 // vinculin binding // inferred from direct assay /// 0019215 // intermediate filament binding // inferred from sequence or structural similarity 32.40 44.58 3.99 0.00 0.01 -4.47
213275_x_at 213275_x_at W47179 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W47179 /FEA=EST /DB_XREF=gi:1332046 /DB_XREF=est:zc34d07.s1 /CLONE=IMAGE:324205 /UG=Hs.297939 cathepsin B W47179 cathepsin B CTSB 1508 NM_001908 /// NM_147780 /// NM_147781 /// NM_147782 /// NM_147783 /// XM_006716244 /// XM_006716245 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006508 // proteolysis // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // inferred from direct assay /// 0030574 // collagen catabolic process // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0042981 // regulation of apoptotic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from direct assay /// 0097067 // cellular response to thyroid hormone stimulus // inferred from expression pattern 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005622 // intracellular // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0036021 // endolysosome lumen // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043394 // proteoglycan binding // inferred from physical interaction 170.65 413.85 3.99 0.00 0.01 -4.47
204176_at 204176_at AA808694 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA808694 /FEA=EST /DB_XREF=gi:2878100 /DB_XREF=est:oa47b08.s1 /CLONE=IMAGE:1308087 /UG=Hs.106290 Kelch motif containing protein /FL=gb:NM_014458.2 gb:AB026190.1 AA808694 kelch-like family member 20 KLHL20 27252 NM_014458 /// XM_005245093 /// XM_006711277 0006810 // transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035455 // response to interferon-alpha // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 1990390 // protein K33-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0015629 // actin cytoskeleton // traceable author statement /// 0016605 // PML body // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019964 // interferon-gamma binding // inferred from direct assay 34.48 42.91 3.99 0.00 0.01 -4.47
212666_at 212666_at AB046845 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB046845.1 /DEF=Homo sapiens mRNA for KIAA1625 protein, partial cds. /FEA=mRNA /GEN=KIAA1625 /PROD=KIAA1625 protein /DB_XREF=gi:10047326 /UG=Hs.119120 E3 ubiquitin ligase SMURF1 AB046845 SMAD specific E3 ubiquitin protein ligase 1 SMURF1 57154 NM_001199847 /// NM_020429 /// NM_181349 /// XM_005250507 /// XM_006716061 /// XM_006716062 0000209 // protein polyubiquitination // inferred from direct assay /// 0006611 // protein export from nucleus // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007398 // ectoderm development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0030154 // cell differentiation // inferred from direct assay /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030514 // negative regulation of BMP signaling pathway // traceable author statement /// 0030579 // ubiquitin-dependent SMAD protein catabolic process // inferred from direct assay /// 0032801 // receptor catabolic process // inferred from direct assay /// 0034394 // protein localization to cell surface // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0048185 // activin binding // non-traceable author statement /// 0070411 // I-SMAD binding // inferred from physical interaction /// 0070412 // R-SMAD binding // inferred from physical interaction -44.13 118.09 -3.99 0.00 0.01 -4.47
214224_s_at 214224_s_at BE674061 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE674061 /FEA=EST /DB_XREF=gi:10034602 /DB_XREF=est:7d74a04.x1 /CLONE=IMAGE:3278670 /UG=Hs.11774 protein (peptidyl-prolyl cistrans isomerase) NIMA-interacting, 4 (parvulin) BE674061 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) PIN4 5303 NM_001170747 /// NM_006223 /// NR_033187 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006457 // protein folding // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030684 // preribosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003681 // bent DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 64.33 123.44 3.99 0.00 0.01 -4.47
203128_at 203128_at NM_004863 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004863.1 /DEF=Homo sapiens serine palmitoyltransferase, long chain base subunit 2 (SPTLC2), mRNA. /FEA=mRNA /GEN=SPTLC2 /PROD=serine palmitoyltransferase, long chain basesubunit 2 /DB_XREF=gi:4758667 /UG=Hs.59403 serine palmitoyltransferase, long chain base subunit 2 /FL=gb:BC005123.1 gb:AB011098.1 gb:NM_004863.1 NM_004863 serine palmitoyltransferase, long chain base subunit 2 SPTLC2 9517 NM_004863 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006686 // sphingomyelin biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046511 // sphinganine biosynthetic process // inferred from electronic annotation /// 0046512 // sphingosine biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0017059 // serine C-palmitoyltransferase complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 43.80 28.35 3.98 0.00 0.01 -4.47
203567_s_at 203567_s_at AU157590 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU157590 /FEA=EST /DB_XREF=gi:11019111 /DB_XREF=est:AU157590 /CLONE=PLACE1008438 /UG=Hs.59545 ring finger protein 15 /FL=gb:U90547.1 gb:NM_006355.1 AU157590 tripartite motif containing 38 TRIM38 10475 NM_006355 /// XM_005248799 /// XM_005248800 /// XR_241880 0007165 // signal transduction // inferred from mutant phenotype /// 0032648 // regulation of interferon-beta production // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0045070 // positive regulation of viral genome replication // inferred from electronic annotation /// 0046598 // positive regulation of viral entry into host cell // inferred from direct assay /// 0050687 // negative regulation of defense response to virus // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 52.88 90.71 3.98 0.00 0.01 -4.47
214448_x_at 214448_x_at NM_002503 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_002503.1 /DEF=Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta (NFKBIB), mRNA. /FEA=CDS /GEN=NFKBIB /PROD=nuclear factor of kappa light polypeptide geneenhancer in B-cells inhibitor, beta /DB_XREF=gi:4505384 /UG=Hs.9731 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta /FL=gb:NM_002503.1 NM_002503 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta NFKBIB 4793 NM_001001716 /// NM_001243116 /// NM_002503 /// NR_040515 /// XM_006723226 /// XM_006723227 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003713 // transcription coactivator activity // traceable author statement /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -43.12 49.64 -3.98 0.00 0.01 -4.47
212205_at 212205_at AA534860 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA534860 /FEA=EST /DB_XREF=gi:2279113 /DB_XREF=est:nf82a04.s1 /CLONE=IMAGE:926382 /UG=Hs.301005 purine-rich element binding protein B AA534860 H2A histone family, member V H2AFV 94239 NM_012412 /// NM_138635 /// NM_201436 /// NM_201516 /// NM_201517 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 95.43 261.54 3.98 0.00 0.01 -4.47
202147_s_at 202147_s_at NM_001550 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001550.1 /DEF=Homo sapiens interferon-related developmental regulator 1 (IFRD1), mRNA. /FEA=mRNA /GEN=IFRD1 /PROD=interferon-related developmental regulator 1 /DB_XREF=gi:4504606 /UG=Hs.7879 interferon-related developmental regulator 1 /FL=gb:BC001272.1 gb:NM_001550.1 NM_001550 interferon-related developmental regulator 1 IFRD1 3475 NM_001007245 /// NM_001197079 /// NM_001197080 /// NM_001550 /// NR_120333 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007518 // myoblast fate determination // traceable author statement /// 0007527 // adult somatic muscle development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation -82.90 105.03 -3.98 0.00 0.01 -4.47
214441_at 214441_at NM_005819 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005819.1 /DEF=Homo sapiens syntaxin 6 (STX6), mRNA. /FEA=CDS /GEN=STX6 /PROD=syntaxin 6 /DB_XREF=gi:5032130 /UG=Hs.157144 syntaxin 6 /FL=gb:AJ002078.1 gb:NM_005819.1 NM_005819 syntaxin 6 STX6 10228 NM_001286210 /// NM_005819 /// XM_005244824 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006906 // vesicle fusion // inferred from physical interaction /// 0007032 // endosome organization // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype /// 0048193 // Golgi vesicle transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // not recorded /// 0030136 // clathrin-coated vesicle // traceable author statement /// 0031201 // SNARE complex // inferred from direct assay /// 0032588 // trans-Golgi network membrane // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction -41.75 65.12 -3.98 0.00 0.01 -4.48
213112_s_at 213112_s_at N30649 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N30649 /FEA=EST /DB_XREF=gi:1149169 /DB_XREF=est:yw77b03.s1 /CLONE=IMAGE:258221 /UG=Hs.279891 truncated calcium binding protein N30649 sequestosome 1 SQSTM1 8878 NM_001142298 /// NM_001142299 /// NM_003900 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006914 // autophagy // inferred from mutant phenotype /// 0006914 // autophagy // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0008104 // protein localization // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0016236 // macroautophagy // inferred from sequence or structural similarity /// 0016239 // positive regulation of macroautophagy // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043122 // regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0046578 // regulation of Ras protein signal transduction // non-traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016234 // inclusion body // inferred from direct assay /// 0016235 // aggresome // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004674 // protein serine/threonine kinase activity // non-traceable author statement /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0030971 // receptor tyrosine kinase binding // traceable author statement /// 0042169 // SH2 domain binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070530 // K63-linked polyubiquitin binding // inferred from electronic annotation -38.35 24.85 -3.98 0.00 0.01 -4.48
202795_x_at 202795_x_at NM_007032 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007032.1 /DEF=Homo sapiens putative nuclear protein (HRIHFB2122), mRNA. /FEA=mRNA /GEN=HRIHFB2122 /PROD=putative nuclear protein /DB_XREF=gi:10334853 /UG=Hs.40342 putative nuclear protein /FL=gb:NM_007032.1 NM_007032 TRIO and F-actin binding protein TRIOBP 11078 NM_001039141 /// NM_007032 /// NM_138632 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0030047 // actin modification // non-traceable author statement /// 0051016 // barbed-end actin filament capping // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // non-traceable author statement /// 0030496 // midbody // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // non-traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0045159 // myosin II binding // non-traceable author statement /// 0051015 // actin filament binding // inferred from direct assay 58.35 161.12 3.98 0.00 0.01 -4.48
204194_at 204194_at NM_001186 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001186.1 /DEF=Homo sapiens BTB and CNC homology 1, basic leucine zipper transcription factor 1 (BACH1), mRNA. /FEA=mRNA /GEN=BACH1 /PROD=BTB and CNC homology 1, basic leucine zippertranscription factor 1 /DB_XREF=gi:4502352 /UG=Hs.154276 BTB and CNC homology 1, basic leucine zipper transcription factor 1 /FL=gb:AB002803.1 gb:NM_001186.1 NM_001186 BTB and CNC homology 1, basic leucine zipper transcription factor 1 BACH1 571 NM_001011545 /// NM_001186 /// NM_206866 /// NR_027655 /// XM_005261012 /// XM_005261013 /// XM_005261014 /// XM_006724034 /// XR_430352 /// XR_430353 /// XR_430354 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000117 // regulation of transcription involved in G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from mutant phenotype /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0020037 // heme binding // non-traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -122.80 120.80 -3.98 0.00 0.01 -4.48
209787_s_at 209787_s_at BC001282 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001282.1 /DEF=Homo sapiens, high-mobility group (nonhistone chromosomal) protein 17-like 3, clone MGC:5145, mRNA, complete cds. /FEA=mRNA /PROD=high-mobility group (nonhistone chromosomal)protein 17-like 3 /DB_XREF=gi:12654876 /UG=Hs.236774 high-mobility group (nonhistone chromosomal) protein 17-like 3 /FL=gb:BC001282.1 BC001282 high mobility group nucleosomal binding domain 4 HMGN4 10473 NM_006353 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from electronic annotation 55.75 202.00 3.97 0.00 0.01 -4.48
207805_s_at 207805_s_at NM_002813 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002813.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (PSMD9), mRNA. /FEA=mRNA /GEN=PSMD9 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 9 /DB_XREF=gi:4506234 /UG=Hs.5648 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 /FL=gb:AB003177.1 gb:NM_002813.1 NM_002813 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 PSMD9 5715 NM_001261400 /// NM_002813 /// NR_048555 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0032024 // positive regulation of insulin secretion // inferred from sequence or structural similarity /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0046676 // negative regulation of insulin secretion // inferred from sequence or structural similarity /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070682 // proteasome regulatory particle assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // non-traceable author statement /// 0008540 // proteasome regulatory particle, base subcomplex // inferred from direct assay 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0043425 // bHLH transcription factor binding // inferred from sequence or structural similarity 77.05 261.88 3.97 0.00 0.01 -4.48
209115_at 209115_at AL117566 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL117566.1 /DEF=Homo sapiens mRNA; cDNA DKFZp566J164 (from clone DKFZp566J164); complete cds. /FEA=mRNA /GEN=DKFZp566J164 /PROD=hypothetical protein /DB_XREF=gi:5912116 /UG=Hs.154320 ubiquitin-activating enzyme E1C (homologous to yeast UBA3) /FL=gb:AF046024.1 gb:AB012190.1 gb:NM_003968.1 gb:AL117566.1 AL117566 ubiquitin-like modifier activating enzyme 3 UBA3 9039 NM_003968 /// NM_198195 /// NM_198197 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007113 // endomitotic cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0045116 // protein neddylation // not recorded /// 0045116 // protein neddylation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation /// 0019781 // NEDD8 activating enzyme activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction 57.35 161.40 3.97 0.00 0.01 -4.48
203188_at 203188_at NM_006876 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006876.1 /DEF=Homo sapiens i-beta-1,3-N-acetylglucosaminyltransferase (BETA3GNTI), mRNA. /FEA=mRNA /GEN=BETA3GNTI /PROD=i-beta-1,3-N-acetylglucosaminyltransferase /DB_XREF=gi:5802983 /UG=Hs.8526 i-beta-1,3-N-acetylglucosaminyltransferase /FL=gb:AF029893.1 gb:NM_006876.1 NM_006876 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 B3GNT1 11041 NM_006876 0005975 // carbohydrate metabolic process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030311 // poly-N-acetyllactosamine biosynthetic process // inferred from direct assay /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008532 // N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 38.12 107.89 3.97 0.00 0.01 -4.48
219209_at 219209_at NM_022168 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022168.1 /DEF=Homo sapiens melanoma differentiation associated protein-5 (MDA5), mRNA. /FEA=mRNA /GEN=MDA5 /PROD=melanoma differentiation associated protein-5 /DB_XREF=gi:11545921 /UG=Hs.293591 melanoma differentiation associated protein-5 /FL=gb:AF095844.1 gb:NM_022168.1 gb:AY017378.1 NM_022168 interferon induced with helicase C domain 1 IFIH1 64135 NM_022168 0002376 // immune system process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009597 // detection of virus // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016925 // protein sumoylation // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032727 // positive regulation of interferon-alpha production // inferred from mutant phenotype /// 0032727 // positive regulation of interferon-alpha production // traceable author statement /// 0032728 // positive regulation of interferon-beta production // inferred from mutant phenotype /// 0032728 // positive regulation of interferon-beta production // traceable author statement /// 0034344 // regulation of type III interferon production // traceable author statement /// 0039528 // cytoplasmic pattern recognition receptor signaling pathway in response to virus // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0051607 // defense response to virus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // traceable author statement /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0043021 // ribonucleoprotein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -35.10 19.98 -3.97 0.00 0.01 -4.48
202481_at 202481_at NM_004753 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004753.1 /DEF=Homo sapiens short-chain dehydrogenasereductase 1 (SDR1), mRNA. /FEA=mRNA /GEN=SDR1 /PROD=short-chain dehydrogenasereductase 1 /DB_XREF=gi:4759083 /UG=Hs.17144 short-chain dehydrogenasereductase 1 /FL=gb:BC002730.1 gb:AF061741.1 gb:NM_004753.1 NM_004753 dehydrogenase/reductase (SDR family) member 3 DHRS3 9249 NM_004753 /// XM_005263533 /// XM_005263534 /// XM_006711036 0001523 // retinoid metabolic process // traceable author statement /// 0007601 // visual perception // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042622 // photoreceptor outer segment membrane // traceable author statement 0000166 // nucleotide binding // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0052650 // NADP-retinol dehydrogenase activity // inferred from electronic annotation -45.52 67.94 -3.97 0.00 0.01 -4.48
211698_at 211698_at AF349444 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF349444.1 /DEF=Homo sapiens Rb- and p300-binding protein EID-1 mRNA, complete cds. /FEA=mRNA /PROD=Rb- and p300-binding protein EID-1 /DB_XREF=gi:13549113 /FL=gb:AF349444.1 AF349444 EP300 interacting inhibitor of differentiation 1 EID1 23741 NM_014335 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from direct assay /// 0035065 // regulation of histone acetylation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from physical interaction /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016235 // aggresome // inferred from direct assay 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0035034 // histone acetyltransferase regulator activity // inferred from direct assay /// 0035035 // histone acetyltransferase binding // inferred from direct assay 132.92 150.89 3.97 0.00 0.01 -4.48
218603_at 218603_at NM_016217 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016217.1 /DEF=Homo sapiens hHDC for homolog of Drosophila headcase (LOC51696), mRNA. /FEA=mRNA /GEN=LOC51696 /PROD=hHDC for homolog of Drosophila headcase /DB_XREF=gi:7706434 /UG=Hs.6679 hHDC for homolog of Drosophila headcase /FL=gb:AB033492.1 gb:NM_016217.1 NM_016217 headcase homolog (Drosophila) HECA 51696 NM_016217 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030323 // respiratory tube development // non-traceable author statement 0016020 // membrane // inferred from direct assay -41.05 152.88 -3.97 0.00 0.01 -4.48
209236_at 209236_at AL389886 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL389886 /DEF=Human DNA sequence from clone RP1-237C24 on chromosome 20 Contains the 3 end of the SLC23A1 gene encoding solute carrier family 23 member1 (nucleobase transporters), ESTs, STSs and GSSs /FEA=mRNA /DB_XREF=gi:10086152 /UG=Hs.82042 solute carrier family 23 (nucleobase transporters), member 1 /FL=gb:AF058319.1 gb:NM_005116.1 gb:AF164142.1 AL389886 solute carrier family 23 (ascorbic acid transporter), member 2 SLC23A2 9962 NM_005116 /// NM_203327 /// XM_005260904 /// XM_006723671 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0015851 // nucleobase transport // traceable author statement /// 0015882 // L-ascorbic acid transport // inferred from direct assay /// 0015993 // molecular hydrogen transport // non-traceable author statement /// 0019852 // L-ascorbic acid metabolic process // non-traceable author statement /// 0019852 // L-ascorbic acid metabolic process // traceable author statement /// 0035461 // vitamin transmembrane transport // inferred from direct assay /// 0035461 // vitamin transmembrane transport // inferred from electronic annotation /// 0035461 // vitamin transmembrane transport // non-traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070904 // transepithelial L-ascorbic acid transport // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // non-traceable author statement /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008520 // L-ascorbate:sodium symporter activity // inferred from electronic annotation /// 0008523 // sodium-dependent multivitamin transmembrane transporter activity // non-traceable author statement /// 0015205 // nucleobase transmembrane transporter activity // traceable author statement /// 0015229 // L-ascorbic acid transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0070890 // sodium-dependent L-ascorbate transmembrane transporter activity // inferred from direct assay 37.73 70.19 3.97 0.00 0.01 -4.48
200676_s_at 200676_s_at NM_003347 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003347.1 /DEF=Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), mRNA. /FEA=mRNA /GEN=UBE2L3 /PROD=ubiquitin-conjugating enzyme E2L 3 /DB_XREF=gi:4507788 /UG=Hs.108104 ubiquitin-conjugating enzyme E2L 3 /FL=gb:NM_003347.1 NM_003347 ubiquitin-conjugating enzyme E2L 3 UBE2L3 7332 NM_001256355 /// NM_001256356 /// NM_003347 /// NM_198157 /// NR_028436 /// NR_046082 0000209 // protein polyubiquitination // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0071383 // cellular response to steroid hormone stimulus // inferred from mutant phenotype /// 0071385 // cellular response to glucocorticoid stimulus // inferred from direct assay 0000151 // ubiquitin ligase complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 38.95 81.97 3.96 0.00 0.01 -4.48
208965_s_at 208965_s_at BG256677 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG256677 /FEA=EST /DB_XREF=gi:12766493 /DB_XREF=est:602370865F1 /CLONE=IMAGE:4478872 /UG=Hs.155530 interferon, gamma-inducible protein 16 /FL=gb:AF208043.1 BG256677 interferon, gamma-inducible protein 16 IFI16 3428 NM_001206567 /// NM_005531 /// XM_005245127 /// XM_006711290 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001819 // positive regulation of cytokine production // traceable author statement /// 0002218 // activation of innate immune response // inferred from direct assay /// 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0009615 // response to virus // non-traceable author statement /// 0010506 // regulation of autophagy // inferred from expression pattern /// 0030097 // hemopoiesis // non-traceable author statement /// 0030099 // myeloid cell differentiation // non-traceable author statement /// 0030224 // monocyte differentiation // inferred from direct assay /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032731 // positive regulation of interleukin-1 beta production // inferred from direct assay /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045824 // negative regulation of innate immune response // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from mutant phenotype /// 0071479 // cellular response to ionizing radiation // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype /// 0097202 // activation of cysteine-type endopeptidase activity // inferred from mutant phenotype /// 2000117 // negative regulation of cysteine-type endopeptidase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -127.25 258.02 -3.96 0.00 0.01 -4.48
203678_at 203678_at NM_014967 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014967.1 /DEF=Homo sapiens KIAA1018 protein (KIAA1018), mRNA. /FEA=mRNA /GEN=KIAA1018 /PROD=KIAA1018 protein /DB_XREF=gi:7662449 /UG=Hs.5400 KIAA1018 protein /FL=gb:AB023235.1 gb:NM_014967.1 NM_014967 FANCD2/FANCI-associated nuclease 1 FAN1 22909 NM_001146094 /// NM_001146095 /// NM_001146096 /// NM_014967 /// XM_005254232 /// XM_005254233 /// XM_005254234 /// XM_005254235 /// XM_005254236 /// XM_006725537 /// XM_006725538 /// XM_006725539 /// XM_006725540 /// XM_006725541 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0006281 // DNA repair // inferred from mutant phenotype /// 0006289 // nucleotide-excision repair // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0033683 // nucleotide-excision repair, DNA incision // inferred from direct assay /// 0033683 // nucleotide-excision repair, DNA incision // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay 0000287 // magnesium ion binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004528 // phosphodiesterase I activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008409 // 5'-3' exonuclease activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0017108 // 5'-flap endonuclease activity // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 46.57 45.99 3.96 0.00 0.01 -4.48
214496_x_at 214496_x_at NM_012330 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_012330.1 /DEF=Homo sapiens histone acetyltransferase (MORF), mRNA. /FEA=CDS /GEN=MORF /PROD=histone acetyltransferase /DB_XREF=gi:6912511 /UG=Hs.27590 histone acetyltransferase /FL=gb:AF119231.1 gb:NM_012330.1 NM_012330 K(lysine) acetyltransferase 6B KAT6B 23522 NM_001256468 /// NM_001256469 /// NM_012330 /// XM_005269664 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from direct assay /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay 0000786 // nucleosome // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -39.65 65.55 -3.96 0.00 0.01 -4.48
209014_at 209014_at AF217963 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF217963.1 /DEF=Homo sapiens NRAGE mRNA, complete cds. /FEA=mRNA /PROD=NRAGE /DB_XREF=gi:9963809 /UG=Hs.177556 melanoma antigen, family D, 1 /FL=gb:AF132205.1 gb:AF124440.1 gb:NM_006986.1 gb:AF217963.1 AF217963 melanoma antigen family D, 1 MAGED1 9500 NM_001005332 /// NM_001005333 /// NM_006986 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from electronic annotation 0000785 // chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 331.23 834.39 3.96 0.00 0.01 -4.48
217874_at 217874_at NM_003849 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003849.1 /DEF=Homo sapiens succinate-CoA ligase, GDP-forming, alpha subunit (SUCLG1), mRNA. /FEA=mRNA /GEN=SUCLG1 /PROD=succinate-CoA ligase, GDP-forming, alphasubunit /DB_XREF=gi:11321580 /UG=Hs.7043 succinate-CoA ligase, GDP-forming, alpha subunit /FL=gb:NM_003849.1 gb:BC000504.1 gb:AF104921.2 NM_003849 succinate-CoA ligase, alpha subunit SUCLG1 8802 NM_003849 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006104 // succinyl-CoA metabolic process // inferred from electronic annotation /// 0006105 // succinate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0045244 // succinate-CoA ligase complex (GDP-forming) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003878 // ATP citrate synthase activity // inferred from electronic annotation /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from electronic annotation /// 0004776 // succinate-CoA ligase (GDP-forming) activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 120.48 265.19 3.95 0.00 0.01 -4.48
208970_s_at 208970_s_at M14016 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M14016.1 /DEF=Human uroporphyrinogen decarboxylase mRNA, complete cds. /FEA=mRNA /GEN=UROD /DB_XREF=gi:340180 /UG=Hs.78601 uroporphyrinogen decarboxylase /FL=gb:BC001778.1 gb:M14016.1 gb:AF104421.1 gb:AF104422.1 gb:AF104423.1 gb:AF104424.1 gb:AF104425.1 gb:AF104426.1 gb:AF104427.1 gb:AF104428.1 gb:AF104429.1 gb:AF104430.1 gb:AF104431.1 gb:AF104432.1 gb:AF104433.1 gb:AF104434.1 gb:AF104435.1 gb:AF104436.1 gb:AF104437.1 gb:AF104438.1 gb:AF104439.1 gb:AF104440.1 gb:NM_000374.2 M14016 uroporphyrinogen decarboxylase UROD 7389 NM_000374 /// NR_036510 /// XM_005271169 /// XM_005271170 0006778 // porphyrin-containing compound metabolic process // traceable author statement /// 0006779 // porphyrin-containing compound biosynthetic process // inferred from electronic annotation /// 0006782 // protoporphyrinogen IX biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred by curator /// 0006783 // heme biosynthetic process // traceable author statement /// 0042168 // heme metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0004853 // uroporphyrinogen decarboxylase activity // inferred from direct assay /// 0004853 // uroporphyrinogen decarboxylase activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 77.87 347.54 3.95 0.00 0.01 -4.48
202843_at 202843_at NM_012328 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012328.1 /DEF=Homo sapiens microvascular endothelial differentiation gene 1 (MDG1), mRNA. /FEA=mRNA /GEN=MDG1 /PROD=microvascular endothelial differentiation gene1 /DB_XREF=gi:9558754 /UG=Hs.6790 DnaJ (Hsp40) homolog, subfamily B, member 9 /FL=gb:AF083247.1 gb:AL080081.1 gb:AB026908.1 gb:NM_012328.1 NM_012328 DnaJ (Hsp40) homolog, subfamily B, member 9 DNAJB9 4189 NM_012328 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0051787 // misfolded protein binding // inferred from direct assay -53.10 50.58 -3.95 0.00 0.01 -4.48
208858_s_at 208858_s_at BC004998 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004998.1 /DEF=Homo sapiens, Similar to membrane bound C2 domain containing protein, clone MGC:4422, mRNA, complete cds. /FEA=mRNA /PROD=Similar to membrane bound C2 domain containingprotein /DB_XREF=gi:13436457 /UG=Hs.8309 KIAA0747 protein /FL=gb:BC004998.1 BC004998 extended synaptotagmin-like protein 1 ESYT1 23344 NM_001184796 /// NM_015292 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 68.93 240.56 3.95 0.01 0.01 -4.48
212753_at 212753_at AI692203 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI692203 /FEA=EST /DB_XREF=gi:4969543 /DB_XREF=est:wd37h12.x1 /CLONE=IMAGE:2330375 /UG=Hs.8834 ring finger protein 3 AI692203 polycomb group ring finger 3 PCGF3 10336 NM_006315 /// XM_005272250 /// XM_005272252 /// XM_005272253 /// XM_005272254 /// XM_006713852 /// XM_006713853 /// XM_006713854 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 41.60 138.53 3.95 0.01 0.01 -4.48
221841_s_at 221841_s_at BF514079 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF514079 /FEA=EST /DB_XREF=gi:11599258 /DB_XREF=est:UI-H-BW1-amw-b-08-0-UI.s1 /CLONE=IMAGE:3071198 /UG=Hs.7934 Kruppel-like factor 4 (gut) BF514079 Kruppel-like factor 4 (gut) KLF4 9314 NM_004235 /// XM_005252305 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007500 // mesodermal cell fate determination // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009913 // epidermal cell differentiation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014067 // negative regulation of phosphatidylinositol 3-kinase signaling // inferred from electronic annotation /// 0014740 // negative regulation of muscle hyperplasia // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031077 // post-embryonic camera-type eye development // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032270 // positive regulation of cellular protein metabolic process // inferred from mutant phenotype /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0034115 // negative regulation of heterotypic cell-cell adhesion // inferred from direct assay /// 0035166 // post-embryonic hemopoiesis // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042221 // response to chemical // inferred from electronic annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043551 // regulation of phosphatidylinositol 3-kinase activity // inferred from electronic annotation /// 0045415 // negative regulation of interleukin-8 biosynthetic process // inferred from direct assay /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0045595 // regulation of cell differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0046985 // positive regulation of hemoglobin biosynthetic process // inferred from mutant phenotype /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // traceable author statement /// 0051247 // positive regulation of protein metabolic process // inferred from genetic interaction /// 0051898 // negative regulation of protein kinase B signaling // inferred from electronic annotation /// 0060761 // negative regulation of response to cytokine stimulus // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from direct assay /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071409 // cellular response to cycloheximide // inferred from electronic annotation /// 0071499 // cellular response to laminar fluid shear stress // inferred from mutant phenotype /// 0090051 // negative regulation of cell migration involved in sprouting angiogenesis // inferred from direct assay /// 1901653 // cellular response to peptide // inferred from electronic annotation /// 2000342 // negative regulation of chemokine (C-X-C motif) ligand 2 production // inferred from direct assay 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay 0000987 // core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001010 // sequence-specific DNA binding transcription factor recruiting transcription factor activity // inferred from sequence or structural similarity /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from mutant phenotype /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0001085 // RNA polymerase II transcription factor binding // inferred from sequence or structural similarity /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0035014 // phosphatidylinositol 3-kinase regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -54.80 43.67 -3.95 0.01 0.01 -4.48
204190_at 204190_at NM_005800 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005800.1 /DEF=Homo sapiens highly charged protein (D13S106E), mRNA. /FEA=mRNA /GEN=D13S106E /PROD=highly charged protein /DB_XREF=gi:5031648 /UG=Hs.151236 highly charged protein /FL=gb:NM_005800.1 NM_005800 ubiquitin specific peptidase like 1 USPL1 10208 NM_005800 /// XM_005266213 /// XM_005266214 /// XM_006719751 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0016926 // protein desumoylation // inferred from direct assay /// 0030576 // Cajal body organization // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0015030 // Cajal body // inferred from direct assay 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032183 // SUMO binding // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay /// 0070140 // SUMO-specific isopeptidase activity // inferred from direct assay 50.50 102.58 3.95 0.01 0.01 -4.48
200977_s_at 200977_s_at AF090891 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF090891.1 /DEF=Homo sapiens clone HQ0105 PRO0105 mRNA, complete cds. /FEA=mRNA /PROD=PRO0105 /DB_XREF=gi:6690159 /UG=Hs.5437 Tax1 (human T-cell leukemia virus type I) binding protein 1 /FL=gb:U33821.2 gb:NM_006024.2 gb:AF090891.1 gb:AF268075.1 AF090891 Tax1 (human T-cell leukemia virus type I) binding protein 1 TAX1BP1 8887 NM_001079864 /// NM_001206901 /// NM_001206902 /// NM_006024 /// XM_005249900 0006915 // apoptotic process // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from sequence or structural similarity -86.90 315.50 -3.95 0.01 0.01 -4.48
212600_s_at 212600_s_at AV727381 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV727381 /FEA=EST /DB_XREF=gi:10836802 /DB_XREF=est:AV727381 /CLONE=HTCCEF02 /UG=Hs.173554 ubiquinol-cytochrome c reductase core protein II AV727381 ubiquinol-cytochrome c reductase core protein II UQCRC2 7385 NM_003366 0006119 // oxidative phosphorylation // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0009060 // aerobic respiration // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005750 // mitochondrial respiratory chain complex III // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 135.98 444.19 3.94 0.01 0.01 -4.48
204290_s_at 204290_s_at NM_005589 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005589.1 /DEF=Homo sapiens methylmalonate-semialdehyde dehydrogenase (MMSDH), mRNA. /FEA=mRNA /GEN=MMSDH /PROD=methylmalonate-semialdehyde dehydrogenase /DB_XREF=gi:11095440 /UG=Hs.293970 methylmalonate-semialdehyde dehydrogenase /FL=gb:NM_005589.1 gb:BC004909.1 gb:M93405.1 gb:AF148505.1 gb:AF159889.1 NM_005589 aldehyde dehydrogenase 6 family, member A1 ALDH6A1 4329 NM_001278593 /// NM_001278594 /// NM_005589 0006210 // thymine catabolic process // inferred from mutant phenotype /// 0006573 // valine metabolic process // inferred from sequence or structural similarity /// 0006574 // valine catabolic process // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched-chain amino acid catabolic process // traceable author statement /// 0019859 // thymine metabolic process // inferred from sequence or structural similarity /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from sequence or structural similarity /// 0004491 // methylmalonate-semialdehyde dehydrogenase (acylating) activity // inferred from mutant phenotype /// 0004491 // methylmalonate-semialdehyde dehydrogenase (acylating) activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0018478 // malonate-semialdehyde dehydrogenase (acetylating) activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay -36.55 82.08 -3.94 0.01 0.01 -4.48
212774_at 212774_at AJ223321 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ223321 /DEF=Homo sapiens RP58 gene, complete CDS /FEA=mRNA /DB_XREF=gi:4128144 /UG=Hs.69997 zinc finger protein 238 AJ223321 zinc finger and BTB domain containing 18 ZBTB18 10472 NM_001278196 /// NM_006352 /// NM_205768 /// XM_005273006 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048872 // homeostasis of number of cells // inferred from electronic annotation /// 0051302 // regulation of cell division // inferred from electronic annotation 0000228 // nuclear chromosome // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0045171 // intercellular bridge // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 73.80 208.77 3.94 0.01 0.01 -4.48
210293_s_at 210293_s_at BC005032 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005032.1 /DEF=Homo sapiens, Sec23 (S. cerevisiae) homolog B, clone MGC:12666, mRNA, complete cds. /FEA=mRNA /PROD=Sec23 (S. cerevisiae) homolog B /DB_XREF=gi:13477148 /UG=Hs.173497 Sec23 (S. cerevisiae) homolog B /FL=gb:BC005032.1 BC005032 Sec23 homolog B (S. cerevisiae) SEC23B 10483 NM_001172745 /// NM_001172746 /// NM_006363 /// NM_032985 /// NM_032986 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0030127 // COPII vesicle coat // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 78.70 116.05 3.94 0.01 0.01 -4.48
200896_x_at 200896_x_at NM_004494 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004494.1 /DEF=Homo sapiens hepatoma-derived growth factor (high-mobility group protein 1-like) (HDGF), mRNA. /FEA=mRNA /GEN=HDGF /PROD=hepatoma-derived growth factor (high-mobilitygroup protein 1-like) /DB_XREF=gi:4758515 /UG=Hs.89525 hepatoma-derived growth factor (high-mobility group protein 1-like) /FL=gb:NM_004494.1 gb:D16431.1 NM_004494 hepatoma-derived growth factor HDGF 3068 NM_001126050 /// NM_001126051 /// NM_004494 /// XM_006711280 /// XM_006711281 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0009987 // cellular process // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0034504 // protein localization to nucleus // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0001222 // transcription corepressor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -245.58 851.04 -3.94 0.01 0.01 -4.48
213518_at 213518_at AI689429 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI689429 /FEA=EST /DB_XREF=gi:4900723 /DB_XREF=est:tx83h10.x1 /CLONE=IMAGE:2276227 /UG=Hs.47144 DKFZP586N0819 protein AI689429 protein kinase C, iota PRKCI 5584 NM_002740 0006468 // protein phosphorylation // inferred from direct assay /// 0006612 // protein targeting to membrane // non-traceable author statement /// 0007010 // cytoskeleton organization // non-traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0034329 // cell junction assembly // traceable author statement /// 0034351 // negative regulation of glial cell apoptotic process // inferred from mutant phenotype /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0035089 // establishment of apical/basal cell polarity // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from direct assay /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // traceable author statement /// 0045216 // cell-cell junction organization // inferred from mutant phenotype /// 0045216 // cell-cell junction organization // traceable author statement /// 0046326 // positive regulation of glucose import // inferred from sequence or structural similarity /// 0046903 // secretion // non-traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048194 // Golgi vesicle budding // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0060252 // positive regulation of glial cell proliferation // inferred from mutant phenotype /// 0061024 // membrane organization // non-traceable author statement /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070830 // tight junction assembly // traceable author statement /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from sequence or structural similarity /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from mutant phenotype 0000133 // polarisome // traceable author statement /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045171 // intercellular bridge // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004697 // protein kinase C activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // traceable author statement /// 0005543 // phospholipid binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 33.27 74.11 3.94 0.01 0.01 -4.48
221787_at 221787_at BF431618 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF431618 /FEA=EST /DB_XREF=gi:11443732 /DB_XREF=est:7o16e03.x1 /CLONE=IMAGE:3574349 /UG=Hs.12342 Homo sapiens clone 24538 mRNA sequence BF431618 chromosome 6 open reading frame 120 C6orf120 387263 NM_001029863 0006915 // apoptotic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 39.33 42.41 3.94 0.01 0.01 -4.48
218482_at 218482_at NM_020189 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020189.1 /DEF=Homo sapiens DC6 protein (DC6), mRNA. /FEA=mRNA /GEN=DC6 /PROD=DC6 protein /DB_XREF=gi:9910185 /UG=Hs.283740 DC6 protein /FL=gb:AF201940.1 gb:AF173296.1 gb:NM_020189.1 NM_020189 enhancer of yellow 2 homolog (Drosophila) ENY2 56943 NM_001193557 /// NM_020189 /// NR_036471 /// NR_036472 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006368 // transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016578 // histone deubiquitination // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation 0000124 // SAGA complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0070390 // transcription export complex 2 // inferred from electronic annotation /// 0071819 // DUBm complex // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from direct assay /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay -117.60 679.17 -3.94 0.01 0.01 -4.48
215489_x_at 215489_x_at AI871287 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI871287 /FEA=EST /DB_XREF=gi:5545255 /DB_XREF=est:wl80h02.x1 /CLONE=IMAGE:2431251 /UG=Hs.166146 Homer, neuronal immediate early gene, 3 AI871287 homer homolog 3 (Drosophila) HOMER3 9454 NM_001145721 /// NM_001145722 /// NM_001145724 /// NM_004838 /// NR_027297 /// XM_006722943 /// XM_006722944 0006605 // protein targeting // traceable author statement /// 0007216 // G-protein coupled glutamate receptor signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation -71.57 226.36 -3.93 0.01 0.01 -4.48
212511_at 212511_at AI766247 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI766247 /FEA=EST /DB_XREF=gi:5232756 /DB_XREF=est:wh68f03.x1 /CLONE=IMAGE:2385917 /UG=Hs.7885 phosphatidylinositol binding clathrin assembly protein AI766247 phosphatidylinositol binding clathrin assembly protein PICALM 8301 NM_001008660 /// NM_001206946 /// NM_001206947 /// NM_007166 /// XM_005274322 /// XM_005274323 /// XM_005274324 /// XM_005274325 /// XM_005274326 /// XM_005274327 /// XM_005274328 /// XM_005274329 /// XM_005274330 /// XM_005274331 /// XM_005274332 /// XM_005274333 /// XM_005274334 /// XM_005274335 /// XM_005274336 /// XM_005274337 /// XM_005274338 /// XM_005274340 /// XM_006718699 /// XM_006718700 /// XM_006718701 /// XM_006718702 0006461 // protein complex assembly // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0016188 // synaptic vesicle maturation // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from mutant phenotype /// 0031623 // receptor internalization // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from direct assay /// 0035459 // cargo loading into vesicle // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048261 // negative regulation of receptor-mediated endocytosis // inferred from direct assay /// 0048268 // clathrin coat assembly // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from mutant phenotype /// 0072583 // clathrin-mediated endocytosis // inferred from mutant phenotype /// 0097459 // iron ion import into cell // inferred from mutant phenotype /// 1901216 // positive regulation of neuron death // inferred from mutant phenotype /// 1902004 // positive regulation of beta-amyloid formation // inferred from mutant phenotype /// 1902959 // regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process // inferred from mutant phenotype /// 1902961 // positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process // inferred from sequence or structural similarity /// 1902963 // negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005905 // coated pit // inferred from direct assay /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // inferred from direct assay /// 0030132 // clathrin coat of coated pit // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from sequence or structural similarity /// 0042734 // presynaptic membrane // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0097418 // neurofibrillary tangle // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // 1-phosphatidylinositol binding // inferred from sequence or structural similarity /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // inferred from physical interaction /// 0030276 // clathrin binding // inferred from sequence or structural similarity /// 0032050 // clathrin heavy chain binding // inferred from direct assay /// 0035615 // clathrin adaptor activity // inferred from mutant phenotype 58.30 103.92 3.93 0.01 0.01 -4.48
202174_s_at 202174_s_at NM_006197 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006197.1 /DEF=Homo sapiens pericentriolar material 1 (PCM1), mRNA. /FEA=mRNA /GEN=PCM1 /PROD=pericentriolar material 1 /DB_XREF=gi:5453855 /UG=Hs.75737 pericentriolar material 1 /FL=gb:L27841.1 gb:NM_006197.1 NM_006197 pericentriolar material 1 PCM1 5108 NM_006197 /// XM_005273509 /// XM_005273512 /// XM_005273519 /// XM_005273520 /// XM_005273521 /// XM_006716336 /// XM_006716337 /// XM_006716338 /// XM_006716339 /// XM_006716340 /// XM_006716341 /// XM_006716342 /// XM_006716343 /// XM_006716344 /// XM_006716345 /// XM_006716346 /// XM_006716347 /// XM_006716348 /// XM_006716349 /// XM_006716350 /// XR_428310 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000165 // MAPK cascade // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001838 // embryonic epithelial tube formation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007158 // neuron cell-cell adhesion // inferred from electronic annotation /// 0007158 // neuron cell-cell adhesion // inferred from mutant phenotype /// 0007165 // signal transduction // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007497 // posterior midgut development // traceable author statement /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014042 // positive regulation of neuron maturation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0022027 // interkinetic nuclear migration // inferred from sequence or structural similarity /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from direct assay /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031122 // cytoplasmic microtubule organization // inferred from mutant phenotype /// 0033619 // membrane protein proteolysis // inferred from direct assay /// 0033630 // positive regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0034453 // microtubule anchoring // inferred from sequence or structural similarity /// 0034454 // microtubule anchoring at centrosome // inferred from electronic annotation /// 0035735 // intraciliary transport involved in cilium morphogenesis // inferred from mutant phenotype /// 0035799 // ureter maturation // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0042551 // neuron maturation // inferred from electronic annotation /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // inferred from sequence or structural similarity /// 0048484 // enteric nervous system development // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // inferred from sequence or structural similarity /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060384 // innervation // inferred from electronic annotation /// 0061146 // Peyer's patch morphogenesis // inferred from electronic annotation /// 0061146 // Peyer's patch morphogenesis // inferred from sequence or structural similarity /// 0071300 // cellular response to retinoic acid // inferred from mutant phenotype /// 0071539 // protein localization to centrosome // inferred from sequence or structural similarity /// 0072300 // positive regulation of metanephric glomerulus development // inferred from electronic annotation /// 0072300 // positive regulation of metanephric glomerulus development // inferred from sequence or structural similarity /// 0090316 // positive regulation of intracellular protein transport // inferred from mutant phenotype /// 0097021 // lymphocyte migration into lymphoid organs // inferred from sequence or structural similarity /// 0097150 // neuronal stem cell maintenance // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0000242 // pericentriolar material // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0010008 // endosome membrane // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031513 // nonmotile primary cilium // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0034451 // centriolar satellite // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from sequence or structural similarity -90.55 223.70 -3.93 0.01 0.01 -4.48
212665_at 212665_at AL556438 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL556438 /FEA=EST /DB_XREF=gi:12899113 /DB_XREF=est:AL556438 /CLONE=CS0DK004YI18 (3 prime) /UG=Hs.12813 DKFZP434J214 protein AL556438 TCDD-inducible poly(ADP-ribose) polymerase TIPARP 25976 NM_001184717 /// NM_001184718 /// NM_015508 0001570 // vasculogenesis // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0044236 // multicellular organismal metabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from direct assay 0005634 // nucleus // inferred from direct assay 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0035326 // enhancer binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 80.37 206.54 3.93 0.01 0.01 -4.48
202551_s_at 202551_s_at BG546884 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG546884 /FEA=EST /DB_XREF=gi:13545549 /DB_XREF=est:602574066F1 /CLONE=IMAGE:4702049 /UG=Hs.19280 cysteine-rich motor neuron 1 /FL=gb:NM_016441.1 gb:AF167706.1 BG546884 cysteine rich transmembrane BMP regulator 1 (chordin-like) /// uncharacterized LOC101929500 CRIM1 /// LOC101929500 51232 /// 101929500 NM_016441 /// XM_005264357 /// XM_005264358 /// XR_244983 /// XR_249109 /// XR_251054 /// XR_426983 0001558 // regulation of cell growth // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005010 // insulin-like growth factor-activated receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from direct assay -304.45 1180.67 -3.93 0.01 0.01 -4.48
213330_s_at 213330_s_at BE886580 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE886580 /FEA=EST /DB_XREF=gi:10341010 /DB_XREF=est:601509325F1 /CLONE=IMAGE:3910566 /UG=Hs.75612 stress-induced-phosphoprotein 1 (Hsp70Hsp90-organizing protein) BE886580 stress-induced phosphoprotein 1 STIP1 10963 NM_001282652 /// NM_001282653 /// NM_006819 0006950 // response to stress // traceable author statement 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from electronic annotation 47.82 161.49 3.92 0.01 0.01 -4.48
212449_s_at 212449_s_at BG288007 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG288007 /FEA=EST /DB_XREF=gi:13042412 /DB_XREF=est:602387785F1 /CLONE=IMAGE:4516701 /UG=Hs.12540 lysophospholipase I BG288007 lysophospholipase I LYPLA1 10434 NM_001279356 /// NM_001279357 /// NM_001279358 /// NM_001279359 /// NM_001279360 /// NM_006330 /// XM_005251127 /// XM_006716417 /// XR_428339 0002084 // protein depalmitoylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042997 // negative regulation of Golgi to plasma membrane protein transport // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004622 // lysophospholipase activity // traceable author statement /// 0008474 // palmitoyl-(protein) hydrolase activity // inferred from mutant phenotype /// 0008474 // palmitoyl-(protein) hydrolase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation 137.85 395.27 3.92 0.01 0.01 -4.48
208794_s_at 208794_s_at D26156 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D26156.1 /DEF=Human mRNA for transcriptional activator hSNF2b, complete cds. /FEA=mRNA /PROD=hSNF2b /DB_XREF=gi:505087 /UG=Hs.78202 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 /FL=gb:NM_003072.1 gb:D26156.1 gb:U29175.1 D26156 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 SMARCA4 6597 NM_001128844 /// NM_001128845 /// NM_001128846 /// NM_001128847 /// NM_001128848 /// NM_001128849 /// NM_003072 /// XM_005260028 /// XM_005260030 /// XM_005260031 /// XM_005260032 /// XM_005260033 /// XM_005260034 /// XM_005260035 /// XM_006722845 /// XM_006722846 /// XM_006722847 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003407 // neural retina development // inferred from expression pattern /// 0006200 // ATP catabolic process // inferred from genetic interaction /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred by curator /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007070 // negative regulation of transcription from RNA polymerase II promoter during mitosis // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035887 // aortic smooth muscle cell differentiation // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0002039 // p53 binding // inferred from physical interaction /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from genetic interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042393 // histone binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay 93.20 217.68 3.92 0.01 0.01 -4.48
221471_at 221471_at AW173623 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW173623 /FEA=EST /DB_XREF=gi:6439571 /DB_XREF=est:xj10a08.x1 /CLONE=IMAGE:2656790 /UG=Hs.272168 tumor differentially expressed 1 /FL=gb:U49188.1 gb:AF112227.1 gb:AF153979.1 gb:NM_006811.1 AW173623 serine incorporator 3 SERINC3 10955 NM_006811 /// NM_198941 1902237 // positive regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -86.92 292.86 -3.92 0.01 0.01 -4.48
221746_at 221746_at BE543027 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE543027 /FEA=EST /DB_XREF=gi:9771672 /DB_XREF=est:601068951F1 /CLONE=IMAGE:3455220 /UG=Hs.76480 ubiquitin-like 4 /FL=gb:NM_014235.1 BE543027 ubiquitin-like 4A UBL4A 8266 NM_014235 0006464 // cellular protein modification process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0071816 // tail-anchored membrane protein insertion into ER membrane // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0071818 // BAT3 complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019787 // small conjugating protein ligase activity // traceable author statement 40.65 76.03 3.91 0.01 0.01 -4.48
201795_at 201795_at NM_002296 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002296.1 /DEF=Homo sapiens lamin B receptor (LBR), mRNA. /FEA=mRNA /GEN=LBR /PROD=lamin B receptor /DB_XREF=gi:4504960 /UG=Hs.152931 lamin B receptor /FL=gb:L25931.1 gb:NM_002296.1 NM_002296 lamin B receptor LBR 3930 NM_002296 /// NM_194442 /// XM_005273125 0006695 // cholesterol biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005639 // integral component of nuclear inner membrane // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005521 // lamin binding // traceable author statement /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070087 // chromo shadow domain binding // inferred from physical interaction 195.43 397.71 3.91 0.01 0.01 -4.48
208891_at 208891_at BC003143 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003143.1 /DEF=Homo sapiens, dual specificity phosphatase 6, clone MGC:3789, mRNA, complete cds. /FEA=mRNA /PROD=dual specificity phosphatase 6 /DB_XREF=gi:13111942 /UG=Hs.180383 dual specificity phosphatase 6 /FL=gb:BC003562.1 gb:BC003143.1 gb:BC005047.1 gb:AB013382.1 gb:NM_001946.1 BC003143 dual specificity phosphatase 6 DUSP6 1848 NM_001946 /// NM_022652 0000188 // inactivation of MAPK activity // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042663 // regulation of endodermal cell fate specification // not recorded /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051409 // response to nitrosative stress // inferred from expression pattern /// 0060420 // regulation of heart growth // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0070848 // response to growth factor // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from direct assay -519.80 1028.58 -3.91 0.01 0.01 -4.48
202151_s_at 202151_s_at NM_016172 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016172.1 /DEF=Homo sapiens putative glialblastoma cell differentiation-related (GDBR1), mRNA. /FEA=mRNA /GEN=GDBR1 /PROD=putative glialblastoma celldifferentiation-related protein /DB_XREF=gi:7705380 /UG=Hs.9194 putative glialblastoma cell differentiation-related /FL=gb:BC004967.1 gb:AF176796.1 gb:NM_016172.1 NM_016172 UBA domain containing 1 UBAC1 10422 NM_016172 0016567 // protein ubiquitination // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 57.80 73.75 3.91 0.01 0.01 -4.48
221742_at 221742_at BF037823 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF037823 /FEA=EST /DB_XREF=gi:10746209 /DB_XREF=est:601461994F1 /CLONE=IMAGE:3865487 /UG=Hs.9683 DnaJ (Hsp40) homolog, subfamily C, member 3 BF037823 CUGBP, Elav-like family member 1 CELF1 10658 NM_001025596 /// NM_001172639 /// NM_001172640 /// NM_006560 /// NM_198700 /// XM_005252754 /// XM_005252755 /// XM_005252756 /// XM_006718122 /// XM_006718123 /// XM_006718124 /// XM_006718125 /// XM_006718126 /// XM_006718127 /// XM_006718128 /// XM_006718129 /// XM_006718130 /// XM_006718131 0006376 // mRNA splice site selection // inferred from sequence or structural similarity /// 0006397 // mRNA processing // traceable author statement /// 0007281 // germ cell development // non-traceable author statement /// 0007286 // spermatid development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009790 // embryo development // non-traceable author statement /// 0016246 // RNA interference // non-traceable author statement /// 0017148 // negative regulation of translation // non-traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000900 // translation repressor activity, nucleic acid binding // non-traceable author statement /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0042835 // BRE binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 42.60 101.97 3.91 0.01 0.02 -4.48
200067_x_at 200067_x_at AL078596 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL078596 /DEF=Human DNA sequence from clone RP3-429G5 on chromosome 6q21-22.1. Contains the NR2E1 gene for nuclear receptor 2E1 (tailless, TLL, TLX, XTLL), the 3 end of the SNX3 gene for sorting nexin 3, ESTs, STSs, GSSs and four predicted CpG islands /FEA=mRNA_2 /DB_XREF=gi:6010168 /UG=Hs.12102 sorting nexin 3 /FL=gb:AF062483.1 gb:AF034546.1 gb:NM_003795.1 AL078596 sorting nexin 3 SNX3 8724 NM_003795 /// NM_152827 /// NM_152828 /// XM_005267192 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006897 // endocytosis // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042541 // hemoglobin biosynthetic process // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from direct assay /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation 125.72 529.39 3.91 0.01 0.02 -4.48
202973_x_at 202973_x_at NM_014883 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014883.1 /DEF=Homo sapiens KIAA0914 gene product (KIAA0914), mRNA. /FEA=mRNA /GEN=KIAA0914 /PROD=KIAA0914 gene product /DB_XREF=gi:7662375 /UG=Hs.177664 KIAA0914 gene product /FL=gb:AB020721.1 gb:NM_014883.1 NM_014883 family with sequence similarity 13, member A FAM13A 10144 NM_001015045 /// NM_001265578 /// NM_001265579 /// NM_001265580 /// NM_014883 /// XM_005262681 /// XM_005262682 /// XM_005262683 /// XM_005262684 /// XM_005262685 /// XM_006714057 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005096 // GTPase activator activity // inferred from electronic annotation -38.63 62.84 -3.91 0.01 0.02 -4.48
57163_at 57163_at H93026 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. H93026:yv06a08.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-241910 /clone_end=3' /gb=H93026 /gi=1099354 /ug=Hs.25597 /len=600 H93026 ELOVL fatty acid elongase 1 /// microRNA 6734 ELOVL1 /// MIR6734 64834 /// 102466723 NM_001256399 /// NM_001256401 /// NM_001256402 /// NM_022821 /// NR_046117 /// NR_106792 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0019367 // fatty acid elongation, saturated fatty acid // inferred from direct assay /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0030148 // sphingolipid biosynthetic process // inferred from mutant phenotype /// 0034625 // fatty acid elongation, monounsaturated fatty acid // inferred from direct assay /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0042761 // very long-chain fatty acid biosynthetic process // inferred from direct assay /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // non-traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0009922 // fatty acid elongase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 96.97 230.71 3.91 0.01 0.02 -4.48
208869_s_at 208869_s_at AF087847 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF087847.1 /DEF=Homo sapiens GABA-A receptor-associated protein like 1 (GABARAPL1) mRNA, complete cds. /FEA=mRNA /GEN=GABARAPL1 /PROD=GABA-A receptor-associated protein like 1 /DB_XREF=gi:13375570 /UG=Hs.282654 Homo sapiens mRNA; cDNA DKFZp564N1272 (from clone DKFZp564N1272); complete cds /FL=gb:AL136676.1 gb:AF087847.1 AF087847 GABA(A) receptor-associated protein like 1 GABARAPL1 23710 NM_031412 /// XM_005253344 0000045 // autophagic vacuole assembly // not recorded /// 0000422 // mitochondrion degradation // not recorded /// 0006914 // autophagy // inferred from electronic annotation /// 0012501 // programmed cell death // not recorded /// 0032258 // CVT pathway // not recorded /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0044805 // late nucleophagy // not recorded /// 0071211 // protein targeting to vacuole involved in autophagy // not recorded 0000407 // pre-autophagosomal structure // not recorded /// 0000421 // autophagic vacuole membrane // not recorded /// 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // not recorded /// 0008429 // phosphatidylethanolamine binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0050811 // GABA receptor binding // not recorded /// 0050811 // GABA receptor binding // inferred from sequence or structural similarity -73.07 93.19 -3.91 0.01 0.02 -4.48
205681_at 205681_at NM_004049 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004049.1 /DEF=Homo sapiens BCL2-related protein A1 (BCL2A1), mRNA. /FEA=mRNA /GEN=BCL2A1 /PROD=BCL2-related protein A1 /DB_XREF=gi:4757839 /UG=Hs.227817 BCL2-related protein A1 /FL=gb:U27467.1 gb:U29680.1 gb:NM_004049.1 NM_004049 BCL2-related protein A1 BCL2A1 597 NM_001114735 /// NM_004049 0006915 // apoptotic process // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // not recorded /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // not recorded /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051400 // BH domain binding // inferred from electronic annotation -44.97 27.24 -3.91 0.01 0.02 -4.48
213342_at 213342_at AI745185 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI745185 /FEA=EST /DB_XREF=gi:5113473 /DB_XREF=est:wg10a05.x1 /CLONE=IMAGE:2364656 /UG=Hs.8939 yes-associated protein 65 kDa /FL=gb:NM_006106.1 AI745185 Yes-associated protein 1 YAP1 10413 NM_001130145 /// NM_001195044 /// NM_001195045 /// NM_001282097 /// NM_001282098 /// NM_001282099 /// NM_001282100 /// NM_001282101 /// NM_006106 /// XM_005271378 /// XM_005271380 /// XM_005271381 /// XM_005271383 0001570 // vasculogenesis // inferred from electronic annotation /// 0003143 // embryonic heart tube morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0008283 // cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010837 // regulation of keratinocyte proliferation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030903 // notochord development // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035329 // hippo signaling // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0048339 // paraxial mesoderm development // inferred from electronic annotation /// 0048368 // lateral mesoderm development // inferred from electronic annotation /// 0060242 // contact inhibition // inferred from direct assay /// 0071480 // cellular response to gamma radiation // inferred from direct assay /// 0072091 // regulation of stem cell proliferation // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0001076 // RNA polymerase II transcription factor binding transcription factor activity // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0070064 // proline-rich region binding // inferred from electronic annotation -49.93 74.71 -3.91 0.01 0.02 -4.48
203650_at 203650_at NM_006404 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006404.1 /DEF=Homo sapiens protein C receptor, endothelial (EPCR) (PROCR), mRNA. /FEA=mRNA /GEN=PROCR /PROD=protein C receptor, endothelial (EPCR) /DB_XREF=gi:5453645 /UG=Hs.82353 protein C receptor, endothelial (EPCR) /FL=gb:NM_006404.1 gb:L35545.1 NM_006404 protein C receptor, endothelial PROCR 10544 NM_006404 /// XM_005260251 /// XM_006723682 0006955 // immune response // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007599 // hemostasis // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0050819 // negative regulation of coagulation // inferred from mutant phenotype 0005813 // centrosome // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 126.40 410.65 3.90 0.01 0.02 -4.48
210150_s_at 210150_s_at BC003355 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003355.1 /DEF=Homo sapiens, clone MGC:5311, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:5311) /DB_XREF=gi:13097167 /UG=Hs.312953 Homo sapiens, clone MGC:5311, mRNA, complete cds /FL=gb:BC003355.1 BC003355 laminin, alpha 5 LAMA5 3911 NM_005560 /// XM_006723796 /// XM_006723797 /// XM_006723798 0001525 // angiogenesis // non-traceable author statement /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0007010 // cytoskeleton organization // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from mutant phenotype /// 0007517 // muscle organ development // inferred from electronic annotation /// 0008037 // cell recognition // non-traceable author statement /// 0008283 // cell proliferation // non-traceable author statement /// 0009790 // embryo development // non-traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030154 // cell differentiation // non-traceable author statement /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0045446 // endothelial cell differentiation // non-traceable author statement /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0048041 // focal adhesion assembly // non-traceable author statement /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0090002 // establishment of protein localization to plasma membrane // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005605 // basal lamina // non-traceable author statement /// 0005606 // laminin-1 complex // inferred from electronic annotation /// 0005610 // laminin-5 complex // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0043259 // laminin-10 complex // inferred from direct assay /// 0043259 // laminin-10 complex // traceable author statement /// 0043260 // laminin-11 complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from direct assay /// 0005198 // structural molecule activity // inferred by curator /// 0005515 // protein binding // inferred from electronic annotation 37.35 105.85 3.90 0.01 0.02 -4.48
213180_s_at 213180_s_at BE895285 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE895285 /FEA=EST /DB_XREF=gi:10358525 /DB_XREF=est:601433529F1 /CLONE=IMAGE:3918799 /UG=Hs.100651 golgi SNAP receptor complex member 2 BE895285 golgi SNAP receptor complex member 2 GOSR2 9570 NM_001012511 /// NM_004287 /// NM_054022 /// XM_005257843 /// XM_005257844 /// XM_005257845 /// XM_006722188 /// XM_006722189 /// XM_006722190 /// XM_006722191 /// XM_006722192 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0061025 // membrane fusion // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005215 // transporter activity // traceable author statement 36.63 90.66 3.90 0.01 0.02 -4.48
209182_s_at 209182_s_at AI302100 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI302100 /FEA=EST /DB_XREF=gi:3961446 /DB_XREF=est:qn57g11.x1 /CLONE=IMAGE:1902404 /UG=Hs.93675 decidual protein induced by progesterone /FL=gb:AB022718.1 gb:NM_007021.1 gb:AL136653.1 AI302100 chromosome 10 open reading frame 10 C10orf10 11067 NM_007021 0005739 // mitochondrion // inferred from direct assay -183.30 210.15 -3.90 0.01 0.02 -4.48
208909_at 208909_at BC000649 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000649.1 /DEF=Homo sapiens, ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1, clone MGC:1362, mRNA, complete cds. /FEA=mRNA /PROD=ubiquinol-cytochrome c reductase, Rieskeiron-sulfur polypeptide 1 /DB_XREF=gi:12653726 /UG=Hs.3712 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 /FL=gb:BC000649.1 gb:NM_006003.1 BC000649 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 UQCRFS1 7386 NM_006003 0009725 // response to hormone // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // non-traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005750 // mitochondrial respiratory chain complex III // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016679 // oxidoreductase activity, acting on diphenols and related substances as donors // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 130.00 734.55 3.90 0.01 0.02 -4.48
212731_at 212731_at U79297 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U79297.1 /DEF=Human clone 23589 mRNA sequence. /FEA=mRNA /DB_XREF=gi:1710280 /UG=Hs.11506 Human clone 23589 mRNA sequence U79297 ankyrin repeat domain 46 ANKRD46 157567 NM_001270377 /// NM_001270378 /// NM_001270379 /// NM_198401 /// XM_006716509 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 46.10 55.38 3.90 0.01 0.02 -4.48
204206_at 204206_at NM_020310 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020310.1 /DEF=Homo sapiens MAX binding protein (MNT), mRNA. /FEA=mRNA /GEN=MNT /PROD=MAX binding protein /DB_XREF=gi:9945317 /UG=Hs.25497 MAX binding protein /FL=gb:NM_020310.1 NM_020310 MAX network transcriptional repressor MNT 4335 NM_020310 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0007569 // cell aging // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from direct assay /// 0001227 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -56.53 111.76 -3.90 0.01 0.02 -4.48
201758_at 201758_at NM_006292 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006292.1 /DEF=Homo sapiens tumor susceptibility gene 101 (TSG101), mRNA. /FEA=mRNA /GEN=TSG101 /PROD=tumor susceptibility gene 101 /DB_XREF=gi:5454139 /UG=Hs.118910 tumor susceptibility gene 101 /FL=gb:BC002487.1 gb:U82130.1 gb:NM_006292.1 NM_006292 tumor susceptibility 101 TSG101 7251 NM_006292 /// XM_005253107 /// XM_005253108 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006464 // cellular protein modification process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred by curator /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred from direct assay /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0046755 // viral budding // inferred from mutant phenotype /// 0046755 // viral budding // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0000813 // ESCRT I complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from mutant phenotype /// 0005771 // multivesicular body // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from direct assay /// 0043130 // ubiquitin binding // traceable author statement /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -74.65 296.02 -3.89 0.01 0.02 -4.48
218403_at 218403_at NM_016399 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016399.1 /DEF=Homo sapiens hypothetical protein (HSPC132), mRNA. /FEA=mRNA /GEN=HSPC132 /PROD=hypothetical protein /DB_XREF=gi:7705466 /UG=Hs.69499 hypothetical protein /FL=gb:BC002638.1 gb:AF161481.1 gb:NM_016399.1 NM_016399 TP53 regulated inhibitor of apoptosis 1 TRIAP1 51499 NM_016399 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0015914 // phospholipid transport // inferred from direct assay /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0034644 // cellular response to UV // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0097035 // regulation of membrane lipid distribution // inferred from mutant phenotype /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from mutant phenotype /// 2001140 // positive regulation of phospholipid transport // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0002039 // p53 binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 1990050 // phosphatidic acid transporter activity // inferred from direct assay 109.32 389.26 3.89 0.01 0.02 -4.48
219276_x_at 219276_x_at NM_024828 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024828.1 /DEF=Homo sapiens hypothetical protein FLJ13657 (FLJ13657), mRNA. /FEA=mRNA /GEN=FLJ13657 /PROD=hypothetical protein FLJ13657 /DB_XREF=gi:13376229 /UG=Hs.178357 hypothetical protein FLJ13657 /FL=gb:NM_024828.1 NM_024828 caspase activity and apoptosis inhibitor 1 CAAP1 79886 NM_001167575 /// NM_024828 /// XM_005251581 0006915 // apoptotic process // inferred from electronic annotation -44.27 142.49 -3.89 0.01 0.02 -4.48
203992_s_at 203992_s_at AF000992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF000992.1 /DEF=Homo sapiens ubiquitous TPR motif, X isoform (UTX) mRNA, alternative transcript 1, complete cds. /FEA=mRNA /GEN=UTX /PROD=ubiquitous TPR motif, X isoform /DB_XREF=gi:2580569 /UG=Hs.13980 ubiquitously transcribed tetratricopeptide repeat gene, X chromosome /FL=gb:NM_021140.1 gb:AF000992.1 gb:AF000993.1 AF000992 lysine (K)-specific demethylase 6A KDM6A 7403 NM_001291415 /// NM_001291416 /// NM_001291417 /// NM_001291418 /// NM_001291421 /// NM_021140 /// NR_111960 /// XM_005272655 /// XM_005272656 /// XM_005272657 /// XM_005272658 /// XM_005272659 /// XM_005272660 /// XM_005272661 /// XR_430507 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0003016 // respiratory system process // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032525 // somite rostral/caudal axis specification // inferred from electronic annotation /// 0048333 // mesodermal cell differentiation // inferred from electronic annotation /// 0048570 // notochord morphogenesis // inferred from electronic annotation /// 0051568 // histone H3-K4 methylation // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation /// 0071557 // histone H3-K27 demethylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0035097 // histone methyltransferase complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation /// 0071558 // histone demethylase activity (H3-K27 specific) // inferred from electronic annotation -36.03 65.24 -3.89 0.01 0.02 -4.48
218774_at 218774_at NM_014026 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014026.1 /DEF=Homo sapiens HSPC015 protein (HSPC015), mRNA. /FEA=mRNA /GEN=HSPC015 /PROD=HSPC015 protein /DB_XREF=gi:7661733 /UG=Hs.279900 HSPC015 protein /FL=gb:AF077201.1 gb:NM_014026.1 NM_014026 decapping enzyme, scavenger DCPS 28960 NM_014026 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000290 // deadenylation-dependent decapping of nuclear-transcribed mRNA // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0036245 // cellular response to menadione // inferred from direct assay /// 0043069 // negative regulation of programmed cell death // inferred from direct assay /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement /// 0045292 // mRNA cis splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0050072 // m7G(5')pppN diphosphatase activity // inferred from direct assay 44.60 69.47 3.89 0.01 0.02 -4.48
201316_at 201316_at AL523904 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523904 /FEA=EST /DB_XREF=gi:12787397 /DB_XREF=est:AL523904 /CLONE=CS0DC003YB07 (3 prime) /UG=Hs.181309 proteasome (prosome, macropain) subunit, alpha type, 2 /FL=gb:NM_002787.1 AL523904 proteasome (prosome, macropain) subunit, alpha type, 2 PSMA2 5683 NM_002787 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 31.60 72.97 3.89 0.01 0.02 -4.48
212688_at 212688_at BC003393 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC003393.1 /DEF=Homo sapiens, clone IMAGE:3447173, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3447173) /DB_XREF=gi:13097275 /UG=Hs.239818 phosphoinositide-3-kinase, catalytic, beta polypeptide /FL=gb:NM_006219.1 BC003393 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta PIK3CB 5291 NM_001256045 /// NM_006219 /// XM_005247530 /// XM_005247531 /// XM_005247532 /// XM_006713659 0000187 // activation of MAPK activity // traceable author statement /// 0001952 // regulation of cell-matrix adhesion // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010508 // positive regulation of autophagy // traceable author statement /// 0014065 // phosphatidylinositol 3-kinase signaling // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0036092 // phosphatidylinositol-3-phosphate biosynthetic process // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0040016 // embryonic cleavage // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0070527 // platelet aggregation // traceable author statement /// 2000369 // regulation of clathrin-mediated endocytosis // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0005942 // phosphatidylinositol 3-kinase complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035004 // phosphatidylinositol 3-kinase activity // traceable author statement /// 0035005 // 1-phosphatidylinositol-4-phosphate 3-kinase activity // not recorded /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded 34.40 68.95 3.89 0.01 0.02 -4.48
207483_s_at 207483_s_at NM_018448 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018448.1 /DEF=Homo sapiens TIP120 protein (TIP120), mRNA. /FEA=mRNA /GEN=TIP120 /PROD=TIP120 protein /DB_XREF=gi:8924259 /UG=Hs.283668 TIP120 protein /FL=gb:AF157326.1 gb:NM_018448.1 NM_018448 cullin-associated and neddylation-dissociated 1 CAND1 55832 NM_018448 0010265 // SCF complex assembly // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay /// 0030154 // cell differentiation // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045899 // positive regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017025 // TBP-class protein binding // inferred from electronic annotation 43.10 152.15 3.88 0.01 0.02 -4.48
212538_at 212538_at AL576253 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL576253 /FEA=EST /DB_XREF=gi:12938214 /DB_XREF=est:AL576253 /CLONE=CS0DI073YM22 (3 prime) /UG=Hs.8021 KIAA1058 protein AL576253 dedicator of cytokinesis 9 DOCK9 23348 NM_001130048 /// NM_001130049 /// NM_001130050 /// NM_015296 /// XM_005254034 /// XM_005254035 /// XM_005254036 /// XM_006719922 /// XM_006719923 /// XM_006719924 /// XM_006719925 /// XM_006719926 /// XM_006719927 /// XM_006719928 /// XM_006719929 /// XM_006719930 /// XM_006719931 /// XM_006719932 /// XM_006719933 /// XM_006719934 /// XM_006719935 /// XM_006719936 /// XM_006719937 /// XM_006719938 /// XM_006719939 /// XM_006719940 /// XM_006719941 /// XM_006719942 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017048 // Rho GTPase binding // inferred from electronic annotation 149.10 391.62 3.88 0.01 0.02 -4.48
218508_at 218508_at NM_018403 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018403.1 /DEF=Homo sapiens transcription factor (SMIF gene) (HSA275986), mRNA. /FEA=mRNA /GEN=HSA275986 /PROD=transcription factor (SMIF gene) /DB_XREF=gi:8923766 /UG=Hs.71414 transcription factor (SMIF gene) /FL=gb:NM_018403.1 NM_018403 decapping mRNA 1A DCP1A 55802 NM_001290204 /// NM_001290205 /// NM_001290206 /// NM_001290207 /// NM_018403 /// XM_005265320 /// XM_005278359 /// XM_005278360 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction -38.05 204.62 -3.88 0.01 0.02 -4.48
203376_at 203376_at BG528818 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG528818 /FEA=EST /DB_XREF=gi:13520355 /DB_XREF=est:602579703F1 /CLONE=IMAGE:4713600 /UG=Hs.116674 pre-mRNA splicing factor 17 /FL=gb:AF038392.1 gb:AF061241.1 gb:NM_015891.1 BG528818 cell division cycle 40 CDC40 51362 NM_015891 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 60.93 155.11 3.88 0.01 0.02 -4.48
218578_at 218578_at NM_024529 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024529.1 /DEF=Homo sapiens hypothetical protein FLJ23316 (FLJ23316), mRNA. /FEA=mRNA /GEN=FLJ23316 /PROD=hypothetical protein FLJ23316 /DB_XREF=gi:13375677 /UG=Hs.5722 hypothetical protein FLJ23316 /FL=gb:AF312865.1 gb:NM_024529.1 NM_024529 cell division cycle 73 CDC73 79577 NM_024529 /// XM_006711537 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001711 // endodermal cell fate commitment // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006378 // mRNA polyadenylation // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010390 // histone monoubiquitination // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from sequence or structural similarity /// 0030177 // positive regulation of Wnt signaling pathway // inferred from direct assay /// 0031442 // positive regulation of mRNA 3'-end processing // inferred from mutant phenotype /// 0031648 // protein destabilization // inferred from mutant phenotype /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from direct assay /// 0033523 // histone H2B ubiquitination // inferred from direct assay /// 0045638 // negative regulation of myeloid cell differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048147 // negative regulation of fibroblast proliferation // inferred from mutant phenotype /// 0050680 // negative regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from sequence or structural similarity /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0016593 // Cdc73/Paf1 complex // inferred from direct assay 0000993 // RNA polymerase II core binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -54.25 136.38 -3.88 0.01 0.02 -4.48
200839_s_at 200839_s_at NM_001908 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001908.1 /DEF=Homo sapiens cathepsin B (CTSB), mRNA. /FEA=mRNA /GEN=CTSB /PROD=cathepsin B /DB_XREF=gi:4503138 /UG=Hs.297939 cathepsin B /FL=gb:M14221.1 gb:L16510.1 gb:NM_001908.1 NM_001908 cathepsin B CTSB 1508 NM_001908 /// NM_147780 /// NM_147781 /// NM_147782 /// NM_147783 /// XM_006716244 /// XM_006716245 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006508 // proteolysis // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // inferred from direct assay /// 0030574 // collagen catabolic process // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0042981 // regulation of apoptotic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from direct assay /// 0097067 // cellular response to thyroid hormone stimulus // inferred from expression pattern 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005622 // intracellular // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0036021 // endolysosome lumen // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043394 // proteoglycan binding // inferred from physical interaction -371.38 1598.99 -3.88 0.01 0.02 -4.48
202146_at 202146_at AA747426 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA747426 /FEA=EST /DB_XREF=gi:2787384 /DB_XREF=est:nx88e08.s1 /CLONE=IMAGE:1269350 /UG=Hs.7879 interferon-related developmental regulator 1 /FL=gb:BC001272.1 gb:NM_001550.1 AA747426 interferon-related developmental regulator 1 IFRD1 3475 NM_001007245 /// NM_001197079 /// NM_001197080 /// NM_001550 /// NR_120333 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007518 // myoblast fate determination // traceable author statement /// 0007527 // adult somatic muscle development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation -70.45 121.72 -3.88 0.01 0.02 -4.48
212366_at 212366_at BF223237 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF223237 /FEA=EST /DB_XREF=gi:11130414 /DB_XREF=est:7q30h09.x1 /CLONE=IMAGE:3700073 /UG=Hs.173081 KIAA0530 protein BF223237 zinc finger protein 292 ZNF292 23036 NM_015021 /// XM_005248697 /// XM_005248698 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -51.80 62.65 -3.87 0.01 0.02 -4.48
212838_at 212838_at AB023227 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB023227.1 /DEF=Homo sapiens mRNA for KIAA1010 protein, partial cds. /FEA=mRNA /GEN=KIAA1010 /PROD=KIAA1010 protein /DB_XREF=gi:4589669 /UG=Hs.23860 KIAA1010 protein AB023227 dynamin binding protein DNMBP 23268 NM_015221 /// XM_006717735 /// XM_006717736 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -71.70 359.20 -3.87 0.01 0.02 -4.48
205924_at 205924_at BC005035 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005035.1 /DEF=Homo sapiens, RAB3B, member RAS oncogene family, clone MGC:12720, mRNA, complete cds. /FEA=mRNA /PROD=RAB3B, member RAS oncogene family /DB_XREF=gi:13477154 /UG=Hs.123072 RAB3B, member RAS oncogene family /FL=gb:BC005035.1 gb:NM_002867.1 gb:M28214.1 BC005035 RAB3B, member RAS oncogene family RAB3B 5865 NM_002867 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0017157 // regulation of exocytosis // inferred from electronic annotation /// 0018125 // peptidyl-cysteine methylation // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from mutant phenotype /// 0051586 // positive regulation of dopamine uptake involved in synaptic transmission // inferred from direct assay /// 0097494 // regulation of vesicle size // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay 39.70 108.60 3.87 0.01 0.02 -4.48
214553_s_at 214553_s_at NM_006628 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_006628.1 /DEF=Homo sapiens cyclic AMP phosphoprotein, 19 kD (ARPP-19), mRNA. /FEA=CDS /GEN=ARPP-19 /PROD=cyclic AMP phosphoprotein, 19 kD /DB_XREF=gi:5729731 /UG=Hs.7351 cyclic AMP phosphoprotein, 19 kD /FL=gb:NM_006628.1 NM_006628 cAMP-regulated phosphoprotein, 19kDa ARPP19 10776 NM_006628 /// XM_005254132 /// XM_005254133 /// XM_005254134 /// XM_005254135 0000086 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from sequence or structural similarity /// 0045722 // positive regulation of gluconeogenesis // inferred from direct assay /// 0046326 // positive regulation of glucose import // non-traceable author statement /// 0050790 // regulation of catalytic activity // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0008601 // protein phosphatase type 2A regulator activity // inferred from sequence or structural similarity /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0019212 // phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0051721 // protein phosphatase 2A binding // inferred from sequence or structural similarity -43.85 119.40 -3.87 0.01 0.02 -4.48
201363_s_at 201363_s_at AB020657 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB020657.1 /DEF=Homo sapiens mRNA for KIAA0850 protein, complete cds. /FEA=mRNA /GEN=KIAA0850 /PROD=KIAA0850 protein /DB_XREF=gi:4240188 /UG=Hs.197298 NS1-binding protein /FL=gb:AF205218.1 gb:AB020657.1 gb:AF161553.1 gb:NM_016389.1 AB020657 influenza virus NS1A binding protein IVNS1ABP 10625 NM_006469 /// NM_016389 /// XM_005244843 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005667 // transcription factor complex // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 52.75 82.75 3.87 0.01 0.02 -4.48
200965_s_at 200965_s_at NM_006720 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006720.1 /DEF=Homo sapiens actin binding LIM protein 1 (ABLIM), transcript variant ABLIM-s, mRNA. /FEA=mRNA /GEN=ABLIM /PROD=actin-binding LIM protein 1, isoform s /DB_XREF=gi:5921987 /UG=Hs.158203 actin binding LIM protein 1 /FL=gb:D31883.1 gb:NM_006720.1 NM_006720 actin binding LIM protein 1 ABLIM1 3983 NM_001003407 /// NM_001003408 /// NM_002313 /// NM_006720 /// XM_005269818 /// XM_005269819 /// XM_005269820 /// XM_005269821 /// XM_005269822 /// XM_005269823 /// XM_005269824 /// XM_005269825 /// XM_005269826 /// XM_005269827 /// XM_005269828 /// XM_005269830 /// XM_006717837 /// XM_006717838 /// XM_006717839 /// XM_006717840 /// XM_006717841 /// XM_006717842 /// XM_006717843 /// XM_006717844 /// XM_006717845 /// XM_006717846 /// XM_006717847 /// XM_006717848 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007601 // visual perception // traceable author statement /// 0009887 // organ morphogenesis // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 40.63 207.69 3.86 0.01 0.02 -4.48
208914_at 208914_at BE646414 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE646414 /FEA=EST /DB_XREF=gi:9970725 /DB_XREF=est:7e86d08.x1 /CLONE=IMAGE:3292047 /UG=Hs.155546 KIAA1080 protein; Golgi-associated, gamma-adaptin ear containing, ARF-binding protein 2 /FL=gb:AF190863.1 gb:AF233522.1 gb:AF165531.1 gb:NM_015044.1 BE646414 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 GGA2 23062 NM_015044 /// XR_429674 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030306 // ADP-ribosylation factor binding // inferred from direct assay 36.47 84.74 3.86 0.01 0.02 -4.48
203568_s_at 203568_s_at NM_006355 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006355.1 /DEF=Homo sapiens ring finger protein 15 (RNF15), mRNA. /FEA=mRNA /GEN=RNF15 /PROD=ring finger protein 15 /DB_XREF=gi:5454013 /UG=Hs.59545 ring finger protein 15 /FL=gb:U90547.1 gb:NM_006355.1 NM_006355 tripartite motif containing 38 TRIM38 10475 NM_006355 /// XM_005248799 /// XM_005248800 /// XR_241880 0007165 // signal transduction // inferred from mutant phenotype /// 0032648 // regulation of interferon-beta production // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0045070 // positive regulation of viral genome replication // inferred from electronic annotation /// 0046598 // positive regulation of viral entry into host cell // inferred from direct assay /// 0050687 // negative regulation of defense response to virus // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 38.20 71.08 3.86 0.01 0.02 -4.48
218224_at 218224_at NM_006029 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006029.2 /DEF=Homo sapiens paraneoplastic antigen MA1 (PNMA1), mRNA. /FEA=mRNA /GEN=PNMA1 /PROD=paraneoplastic antigen MA1 /DB_XREF=gi:11141858 /UG=Hs.194709 paraneoplastic antigen MA1 /FL=gb:AF037364.2 gb:NM_006029.2 NM_006029 paraneoplastic Ma antigen 1 PNMA1 9240 NM_006029 0002437 // inflammatory response to antigenic stimulus // inferred from sequence or structural similarity /// 0006915 // apoptotic process // non-traceable author statement /// 0007283 // spermatogenesis // non-traceable author statement /// 0007417 // central nervous system development // non-traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 82.48 318.44 3.86 0.01 0.02 -4.48
205580_s_at 205580_s_at D28481 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D28481.1 /DEF=Human mRNA for histamine H1 receptor, complete cds. /FEA=mRNA /PROD=histamine H1 receptor /DB_XREF=gi:457654 /UG=Hs.1570 histamine receptor H1 /FL=gb:NM_000861.2 gb:AF026261.1 gb:D28481.1 D28481 histamine receptor H1 HRH1 3269 NM_000861 /// NM_001098211 /// NM_001098212 /// NM_001098213 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // traceable author statement /// 0007613 // memory // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0032962 // positive regulation of inositol trisphosphate biosynthetic process // inferred from sequence or structural similarity /// 0043114 // regulation of vascular permeability // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0048016 // inositol phosphate-mediated signaling // inferred from sequence or structural similarity /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048245 // eosinophil chemotaxis // inferred from electronic annotation /// 0071420 // cellular response to histamine // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004969 // histamine receptor activity // inferred from sequence or structural similarity -43.65 94.80 -3.86 0.01 0.02 -4.48
212233_at 212233_at AL523076 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523076 /FEA=EST /DB_XREF=gi:12786569 /DB_XREF=est:AL523076 /CLONE=CS0DC001YI12 (3 prime) /UG=Hs.82503 H.sapiens mRNA for 3UTR of unknown protein AL523076 microtubule-associated protein 1B MAP1B 4131 NM_005909 /// NM_032010 /// XM_005248507 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from direct assay /// 0016358 // dendrite development // inferred from electronic annotation /// 0032387 // negative regulation of intracellular transport // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // inferred from electronic annotation /// 0048675 // axon extension // inferred from electronic annotation /// 0061162 // establishment of monopolar cell polarity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005198 // structural molecule activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 284.77 737.71 3.86 0.01 0.02 -4.48
202171_at 202171_at AU146275 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU146275 /FEA=EST /DB_XREF=gi:11007796 /DB_XREF=est:AU146275 /CLONE=HEMBB1000004 /UG=Hs.6557 zinc finger protein 161 /FL=gb:D28118.1 gb:NM_007146.1 AU146275 vascular endothelial zinc finger 1 VEZF1 7716 NM_007146 /// XM_005257643 /// XM_005257644 0001525 // angiogenesis // inferred from electronic annotation /// 0001885 // endothelial cell development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006968 // cellular defense response // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -46.95 136.35 -3.86 0.01 0.02 -4.48
218136_s_at 218136_s_at NM_018579 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018579.1 /DEF=Homo sapiens mitochondrial solute carrier (LOC51312), mRNA. /FEA=mRNA /GEN=LOC51312 /PROD=hypothetical protein PRO1278 /DB_XREF=gi:8924027 /UG=Hs.300496 mitochondrial solute carrier /FL=gb:AF155660.1 gb:AF116630.1 gb:NM_018579.1 NM_018579 solute carrier family 25 (mitochondrial iron transporter), member 37 SLC25A37 51312 NM_016612 /// XM_005273526 /// XM_006716352 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0034755 // iron ion transmembrane transport // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048250 // mitochondrial iron ion transport // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005381 // iron ion transmembrane transporter activity // inferred from electronic annotation -33.40 75.92 -3.86 0.01 0.02 -4.48
209592_s_at 209592_s_at BC001264 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001264.1 /DEF=Homo sapiens, WD-repeat protein, clone MGC:5032, mRNA, complete cds. /FEA=mRNA /PROD=WD-repeat protein /DB_XREF=gi:12654840 /UG=Hs.176600 WD-repeat protein /FL=gb:BC001264.1 BC001264 DDB1 and CUL4 associated factor 7 DCAF7 10238 NM_001003725 /// NM_005828 /// NR_073585 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred by curator /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0016363 // nuclear matrix // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0080008 // Cul4-RING E3 ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -63.38 101.21 -3.86 0.01 0.02 -4.48
201871_s_at 201871_s_at NM_015853 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015853.1 /DEF=Homo sapiens ORF (LOC51035), mRNA. /FEA=mRNA /GEN=LOC51035 /PROD=unknown protein LOC51035 /DB_XREF=gi:7705653 /UG=Hs.77868 ORF /FL=gb:BC000902.1 gb:M68864.1 gb:NM_015853.1 NM_015853 UBX domain protein 1 UBXN1 51035 NM_001286077 /// NM_001286078 /// NM_015853 /// XM_005274033 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // non-traceable author statement 0000502 // proteasome complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0034098 // Cdc48p-Npl4p-Ufd1p AAA ATPase complex // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0031593 // polyubiquitin binding // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay /// 0051117 // ATPase binding // inferred from physical interaction /// 0071796 // K6-linked polyubiquitin binding // inferred from direct assay -96.07 229.46 -3.86 0.01 0.02 -4.48
212626_x_at 212626_x_at AA664258 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA664258 /FEA=EST /DB_XREF=gi:2618249 /DB_XREF=est:ac08a08.s1 /CLONE=IMAGE:855830 /UG=Hs.182447 heterogeneous nuclear ribonucleoprotein C (C1C2) AA664258 heterogeneous nuclear ribonucleoprotein C (C1/C2) HNRNPC 3183 NM_001077442 /// NM_001077443 /// NM_004500 /// NM_031314 /// XM_006720124 /// XM_006720125 /// XM_006720126 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045120 // pronucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -172.70 734.45 -3.85 0.01 0.02 -4.48
217911_s_at 217911_s_at NM_004281 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004281.1 /DEF=Homo sapiens BCL2-associated athanogene 3 (BAG3), mRNA. /FEA=mRNA /GEN=BAG3 /PROD=BCL2-associated athanogene 3 /DB_XREF=gi:6631072 /UG=Hs.15259 BCL2-associated athanogene 3 /FL=gb:AF095193.2 gb:NM_004281.1 gb:AF127139.1 gb:AF071218.2 NM_004281 BCL2-associated athanogene 3 BAG3 9531 NM_004281 /// XM_005270287 0006457 // protein folding // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 0010664 // negative regulation of striated muscle cell apoptotic process // inferred from electronic annotation /// 0021510 // spinal cord development // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // non-traceable author statement /// 0050821 // protein stabilization // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation 119.40 390.65 3.85 0.01 0.02 -4.48
204689_at 204689_at NM_001529 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001529.1 /DEF=Homo sapiens hematopoietically expressed homeobox (HHEX), mRNA. /FEA=mRNA /GEN=HHEX /PROD=hematopoietically expressed homeobox /DB_XREF=gi:10835016 /UG=Hs.118651 hematopoietically expressed homeobox /FL=gb:NM_001529.1 gb:L16499.1 gb:NM_002729.1 NM_001529 hematopoietically expressed homeobox HHEX 3087 NM_002729 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0009611 // response to wounding // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from sequence or structural similarity /// 0010621 // negative regulation of transcription by transcription factor localization // inferred by curator /// 0010944 // negative regulation of transcription by competitive promoter binding // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from sequence or structural similarity /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from mutant phenotype /// 0022027 // interkinetic nuclear migration // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred by curator /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0031016 // pancreas development // inferred from electronic annotation /// 0034504 // protein localization to nucleus // inferred from direct assay /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048729 // tissue morphogenesis // inferred from electronic annotation /// 0048853 // forebrain morphogenesis // inferred from electronic annotation /// 0060431 // primary lung bud formation // inferred from electronic annotation /// 0061009 // common bile duct development // inferred from electronic annotation /// 0061010 // gall bladder development // inferred from electronic annotation /// 0061011 // hepatic duct development // inferred from electronic annotation /// 0061017 // hepatoblast differentiation // inferred from electronic annotation /// 0070365 // hepatocyte differentiation // inferred from electronic annotation /// 0071103 // DNA conformation change // inferred from direct assay /// 0090009 // primitive streak formation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0032993 // protein-DNA complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008190 // eukaryotic initiation factor 4E binding // inferred from direct assay /// 0008301 // DNA binding, bending // inferred from direct assay /// 0017025 // TBP-class protein binding // traceable author statement /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // traceable author statement /// 0070491 // repressing transcription factor binding // inferred from direct assay /// 0071837 // HMG box domain binding // inferred from electronic annotation -90.37 381.49 -3.85 0.01 0.02 -4.48
213039_at 213039_at AB011093 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011093.1 /DEF=Homo sapiens mRNA for KIAA0521 protein, partial cds. /FEA=mRNA /GEN=KIAA0521 /PROD=KIAA0521 protein /DB_XREF=gi:3043565 /UG=Hs.6150 Rho-specific guanine nucleotide exchange factor p114 AB011093 Rho/Rac guanine nucleotide exchange factor (GEF) 18 ARHGEF18 23370 NM_001130955 /// NM_015318 /// XM_005272464 /// XM_005272465 /// XM_006722705 /// XM_006722706 /// XM_006722707 /// XM_006722708 /// XM_006722709 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0008360 // regulation of cell shape // inferred from direct assay /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0030054 // cell junction // traceable author statement /// 0045177 // apical part of cell // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation 45.65 149.97 3.85 0.01 0.02 -4.48
209544_at 209544_at AF027706 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF027706.1 /DEF=Homo sapiens serinethreonine kinase RICK (RICK) mRNA, complete cds. /FEA=mRNA /GEN=RICK /PROD=serinethreonine kinase RICK /DB_XREF=gi:3123886 /UG=Hs.103755 receptor-interacting serine-threonine kinase 2 /FL=gb:BC004553.1 gb:AF027706.1 gb:AF064824.1 gb:AF078530.1 gb:NM_003821.1 AF027706 receptor-interacting serine-threonine kinase 2 RIPK2 8767 NM_003821 /// XM_005251092 0000187 // activation of MAPK activity // traceable author statement /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002250 // adaptive immune response // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from sequence or structural similarity /// 0007254 // JNK cascade // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from mutant phenotype /// 0031398 // positive regulation of protein ubiquitination // non-traceable author statement /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032727 // positive regulation of interferon-alpha production // non-traceable author statement /// 0032728 // positive regulation of interferon-beta production // non-traceable author statement /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // non-traceable author statement /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0033091 // positive regulation of immature T cell proliferation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034134 // toll-like receptor 2 signaling pathway // inferred from direct assay /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0045087 // innate immune response // inferred from direct assay /// 0045087 // innate immune response // inferred from sequence or structural similarity /// 0045087 // innate immune response // traceable author statement /// 0045627 // positive regulation of T-helper 1 cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070427 // nucleotide-binding oligomerization domain containing 1 signaling pathway // inferred from electronic annotation /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070671 // response to interleukin-12 // inferred from electronic annotation /// 0070673 // response to interleukin-18 // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071223 // cellular response to lipoteichoic acid // inferred from electronic annotation /// 0071224 // cellular response to peptidoglycan // inferred from electronic annotation /// 0071225 // cellular response to muramyl dipeptide // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030274 // LIM domain binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0050700 // CARD domain binding // inferred from direct assay /// 0050700 // CARD domain binding // inferred from physical interaction -41.02 34.91 -3.85 0.01 0.02 -4.48
208936_x_at 208936_x_at AF074000 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF074000.1 /DEF=Homo sapiens Po66 carbohydrate binding protein mRNA, complete cds. /FEA=mRNA /PROD=Po66 carbohydrate binding protein /DB_XREF=gi:5577965 /UG=Hs.4082 lectin, galactoside-binding, soluble, 8 (galectin 8) /FL=gb:AF342815.1 gb:L78132.1 gb:AF074000.1 gb:NM_006499.1 AF074000 lectin, galactoside-binding, soluble, 8 LGALS8 3964 NM_006499 /// NM_201543 /// NM_201544 /// NM_201545 0002317 // plasma cell differentiation // inferred from electronic annotation /// 0031295 // T cell costimulation // inferred from electronic annotation 0005615 // extracellular space // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation -45.28 85.71 -3.85 0.01 0.02 -4.48
208901_s_at 208901_s_at J03250 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J03250.1 /DEF=Human topoisomerase I mRNA, complete cds. /FEA=mRNA /GEN=TOP1 /DB_XREF=gi:339805 /UG=Hs.317 topoisomerase (DNA) I /FL=gb:NM_003286.1 gb:J03250.1 J03250 topoisomerase (DNA) I TOP1 7150 NM_003286 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006265 // DNA topological change // not recorded /// 0006265 // DNA topological change // inferred from direct assay /// 0006338 // chromatin remodeling // not recorded /// 0007059 // chromosome segregation // not recorded /// 0012501 // programmed cell death // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // non-traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0040016 // embryonic cleavage // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0000228 // nuclear chromosome // inferred from direct assay /// 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031298 // replication fork protection complex // not recorded /// 0043204 // perikaryon // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from direct assay /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003917 // DNA topoisomerase type I activity // inferred from direct assay /// 0003917 // DNA topoisomerase type I activity // inferred from mutant phenotype /// 0003918 // DNA topoisomerase type II (ATP-hydrolyzing) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 148.35 468.88 3.85 0.01 0.02 -4.48
213289_at 213289_at BE221922 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE221922 /FEA=EST /DB_XREF=gi:8909343 /DB_XREF=est:hu04g12.x1 /CLONE=IMAGE:3165670 /UG=Hs.5181 proliferation-associated 2G4, 38kD BE221922 apolipoprotein O-like APOOL 139322 NM_198450 /// XM_005262080 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 50.83 70.71 3.85 0.01 0.02 -4.48
220768_s_at 220768_s_at NM_004384 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004384.1 /DEF=Homo sapiens casein kinase 1, gamma 3 (CSNK1G3), mRNA. /FEA=mRNA /GEN=CSNK1G3 /PROD=casein kinase 1, gamma 3 /DB_XREF=gi:4758079 /UG=Hs.129206 casein kinase 1, gamma 3 /FL=gb:AF049089.1 gb:NM_004384.1 NM_004384 casein kinase 1, gamma 3 CSNK1G3 1456 NM_001031812 /// NM_001044722 /// NM_001044723 /// NM_001270572 /// NM_001270573 /// NM_001270574 /// NM_004384 /// XM_005271891 /// XM_005271892 /// XM_005271893 /// XM_005271894 /// XM_005271895 /// XM_005271896 0006464 // cellular protein modification process // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -74.15 186.43 -3.85 0.01 0.02 -4.48
221840_at 221840_at AA775177 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA775177 /FEA=EST /DB_XREF=gi:2834511 /DB_XREF=est:ac79a06.s1 /CLONE=IMAGE:868786 /UG=Hs.31137 protein tyrosine phosphatase, receptor type, E /FL=gb:NM_006504.1 AA775177 protein tyrosine phosphatase, receptor type, E PTPRE 5791 NM_006504 /// NM_130435 /// XM_005252691 /// XM_005252692 /// XM_006717932 0006470 // protein dephosphorylation // traceable author statement /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0033003 // regulation of mast cell activation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation 126.72 389.99 3.84 0.01 0.02 -4.48
214439_x_at 214439_x_at AF043899 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF043899.1 /DEF=Homo sapiens amphiphysin IIc1 mRNA, complete cds. /FEA=CDS /PROD=amphiphysin IIc1 /DB_XREF=gi:3064256 /UG=Hs.193163 bridging integrator 1 /FL=gb:AF043899.1 AF043899 bridging integrator 1 BIN1 274 NM_004305 /// NM_139343 /// NM_139344 /// NM_139345 /// NM_139346 /// NM_139347 /// NM_139348 /// NM_139349 /// NM_139350 /// NM_139351 /// XM_005263642 /// XM_005263643 /// XM_005263644 /// XM_005263645 /// XM_005263646 /// XM_005263647 /// XM_005263648 /// XM_006712424 /// XM_006712425 /// XM_006712426 /// XM_006712427 /// XM_006712428 /// XM_006712429 /// XM_006712430 /// XM_006712431 /// XM_006712432 /// XM_006712433 /// XM_006712434 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from mutant phenotype /// 0060988 // lipid tube assembly // inferred from mutant phenotype /// 0071156 // regulation of cell cycle arrest // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030018 // Z disc // inferred from sequence or structural similarity /// 0030315 // T-tubule // inferred from sequence or structural similarity /// 0030424 // axon // inferred from direct assay /// 0031674 // I band // inferred from sequence or structural similarity /// 0033268 // node of Ranvier // inferred from sequence or structural similarity /// 0043194 // axon initial segment // inferred from sequence or structural similarity /// 0043196 // varicosity // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0044300 // cerebellar mossy fiber // inferred from electronic annotation /// 0060987 // lipid tube // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from physical interaction /// 0051020 // GTPase binding // inferred from electronic annotation -69.00 142.03 -3.84 0.01 0.02 -4.48
206710_s_at 206710_s_at NM_012307 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012307.1 /DEF=Homo sapiens differentially expressed in adenocarcinoma of the lung (KIAA0987), mRNA. /FEA=mRNA /GEN=KIAA0987 /PROD=differentially expressed in adenocarcinoma ofthe lung /DB_XREF=gi:6912469 /UG=Hs.103839 erythrocyte membrane protein band 4.1-like 3 /FL=gb:AF069072.1 gb:NM_012307.1 NM_012307 erythrocyte membrane protein band 4.1-like 3 EPB41L3 23136 NM_001281533 /// NM_001281534 /// NM_001281535 /// NM_012307 /// XM_005258085 /// XM_005258086 /// XM_005258087 /// XM_005258088 /// XM_005258089 /// XM_005258090 /// XM_005258091 /// XM_006722301 /// XM_006722302 /// XM_006722303 /// XM_006722304 /// XM_006722305 /// XM_006722306 /// XM_006722307 /// XM_006722308 /// XM_006722309 /// XM_006722310 /// XM_006722311 /// XM_006722312 /// XM_006722313 /// XM_006722314 /// XM_006722315 /// XM_006722316 0002175 // protein localization to paranode region of axon // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007016 // cytoskeletal anchoring at plasma membrane // traceable author statement /// 0008360 // regulation of cell shape // inferred from sequence or structural similarity /// 0030865 // cortical cytoskeleton organization // traceable author statement /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030913 // paranodal junction assembly // inferred from sequence or structural similarity /// 0043217 // myelin maintenance // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0071205 // protein localization to juxtaparanode region of axon // inferred from sequence or structural similarity /// 0072659 // protein localization to plasma membrane // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030673 // axolemma // inferred from sequence or structural similarity /// 0033270 // paranode region of axon // inferred from sequence or structural similarity /// 0044224 // juxtaparanode region of axon // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation -99.90 248.68 -3.84 0.01 0.02 -4.48
201376_s_at 201376_s_at AI591354 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI591354 /FEA=EST /DB_XREF=gi:4600402 /DB_XREF=est:ts10e04.x1 /CLONE=IMAGE:2228190 /UG=Hs.808 heterogeneous nuclear ribonucleoprotein F /FL=gb:BC001432.1 gb:L28010.1 gb:NM_004966.1 AI591354 heterogeneous nuclear ribonucleoprotein F HNRNPF 3185 NM_001098204 /// NM_001098205 /// NM_001098206 /// NM_001098207 /// NM_001098208 /// NM_004966 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0043484 // regulation of RNA splicing // inferred from direct assay /// 0043484 // regulation of RNA splicing // inferred from mutant phenotype 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 48.52 200.44 3.84 0.01 0.02 -4.48
204948_s_at 204948_s_at NM_013409 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013409.1 /DEF=Homo sapiens follistatin (FST), transcript variant FST344, mRNA. /FEA=mRNA /GEN=FST /PROD=follistatin isoform FST344 precursor /DB_XREF=gi:7242221 /UG=Hs.9914 follistatin /FL=gb:BC004107.1 gb:NM_013409.1 NM_013409 follistatin FST 10468 NM_006350 /// NM_013409 /// XM_005248400 /// XM_005248401 /// XM_005248402 /// XM_005248403 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002244 // hematopoietic progenitor cell differentiation // inferred from direct assay /// 0007276 // gamete generation // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032926 // negative regulation of activin receptor signaling pathway // inferred from direct assay /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0046882 // negative regulation of follicle-stimulating hormone secretion // non-traceable author statement /// 0051798 // positive regulation of hair follicle development // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004871 // signal transducer activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from physical interaction -33.77 93.21 -3.84 0.01 0.02 -4.48
214960_at 214960_at AF229253 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF229253.1 /DEF=Homo sapiens clone FIF N1 fibroblast growth factor 2-interacting factor (API5) mRNA, partial cds.; alternatively spliced. /FEA=mRNA /GEN=API5 /PROD=fibroblast growth factor 2-interacting factor /DB_XREF=gi:12656082 /UG=Hs.227913 API5-like 1 AF229253 apoptosis inhibitor 5 API5 8539 NM_001142930 /// NM_001142931 /// NM_001243747 /// NM_006595 /// NR_024625 /// XM_006718359 0006915 // apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // non-traceable author statement /// 2000270 // negative regulation of fibroblast apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 35.85 35.57 3.84 0.01 0.02 -4.48
220248_x_at 220248_x_at NM_018839 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018839.1 /DEF=Homo sapiens p47 protein (LOC55968), mRNA. /FEA=mRNA /GEN=LOC55968 /PROD=p47 protein /DB_XREF=gi:10047113 /UG=Hs.284261 p47 protein /FL=gb:NM_018839.1 gb:AF112211.1 NM_018839 NSFL1 (p97) cofactor (p47) NSFL1C 55968 NM_001206736 /// NM_016143 /// NM_018839 /// NM_182483 /// NR_038164 /// XM_006723591 /// XM_006723592 /// XM_006723593 /// XM_006723594 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation -45.30 230.15 -3.84 0.01 0.02 -4.48
211098_x_at 211098_x_at AF277194 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF277194.1 /DEF=Homo sapiens PNAS-136 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-136 /DB_XREF=gi:12751112 /UG=Hs.93832 putative membrane protein /FL=gb:AF277194.1 AF277194 transmembrane and coiled-coil domains 1 TMCO1 54499 NM_001256164 /// NM_001256165 /// NM_019026 /// NR_045818 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 43.38 123.94 3.83 0.01 0.02 -4.48
204842_x_at 204842_x_at BC002763 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002763.1 /DEF=Homo sapiens, Similar to protein kinase, cAMP-dependent, regulatory, type II, alpha, clone MGC:3606, mRNA, complete cds. /FEA=mRNA /PROD=Similar to protein kinase, cAMP-dependent,regulatory, type II, alpha /DB_XREF=gi:12803842 /UG=Hs.289075 protein kinase, cAMP-dependent, regulatory, type II, alpha /FL=gb:BC002763.1 gb:NM_004157.1 BC002763 protein kinase, cAMP-dependent, regulatory, type II, alpha PRKAR2A 5576 NM_004157 /// XM_005265313 /// XM_005265314 /// XM_005265315 /// XR_427280 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 2000480 // negative regulation of cAMP-dependent protein kinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // non-traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction 39.70 208.53 3.83 0.01 0.02 -4.48
212377_s_at 212377_s_at AU158495 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU158495 /FEA=EST /DB_XREF=gi:11020016 /DB_XREF=est:AU158495 /CLONE=PLACE3000066 /UG=Hs.8121 Notch (Drosophila) homolog 2 AU158495 notch 2 NOTCH2 4853 NM_001200001 /// NM_024408 /// XM_005270901 /// XM_005270902 /// XM_006710667 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001709 // cell fate determination // traceable author statement /// 0001890 // placenta development // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002437 // inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0003184 // pulmonary valve morphogenesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006959 // humoral immune response // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007275 // multicellular organismal development // non-traceable author statement /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009887 // organ morphogenesis // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0016049 // cell growth // inferred from direct assay /// 0019827 // stem cell maintenance // traceable author statement /// 0030097 // hemopoiesis // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0046579 // positive regulation of Ras protein signal transduction // inferred from direct assay /// 0046849 // bone remodeling // inferred from mutant phenotype /// 0050793 // regulation of developmental process // inferred from electronic annotation /// 0060413 // atrial septum morphogenesis // inferred from mutant phenotype /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0072602 // interleukin-4 secretion // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0004872 // receptor activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0038049 // ligand-activated RNA polymerase II transcription factor binding transcription factor activity // traceable author statement -71.73 210.09 -3.83 0.01 0.02 -4.48
208734_x_at 208734_x_at M28213 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M28213.1 /DEF=Homo sapiens GTP-binding protein (RAB2) mRNA, complete cds. /FEA=mRNA /GEN=RAB2 /PROD=GTP-binding protein /DB_XREF=gi:550061 /UG=Hs.78305 RAB2, member RAS oncogene family /FL=gb:NM_002865.1 gb:M28213.1 M28213 RAB2A, member RAS oncogene family RAB2A 5862 NM_001242644 /// NM_002865 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay -61.68 325.04 -3.83 0.01 0.02 -4.48
212756_s_at 212756_s_at AI761518 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI761518 /FEA=EST /DB_XREF=gi:5177185 /DB_XREF=est:wi61d01.x1 /CLONE=IMAGE:2394721 /UG=Hs.15303 KIAA0349 protein AI761518 ubiquitin protein ligase E3 component n-recognin 2 UBR2 23304 NM_001184801 /// NM_015255 /// XM_005248965 /// XM_005248966 0006342 // chromatin silencing // inferred from sequence or structural similarity /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0032007 // negative regulation of TOR signaling // inferred from mutant phenotype /// 0033522 // histone H2A ubiquitination // inferred from sequence or structural similarity /// 0071233 // cellular response to leucine // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070728 // leucine binding // inferred from direct assay -47.77 76.59 -3.83 0.01 0.02 -4.48
203989_x_at 203989_x_at NM_001992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001992.2 /DEF=Homo sapiens coagulation factor II (thrombin) receptor (F2R), mRNA. /FEA=mRNA /GEN=F2R /PROD=coagulation factor II receptor precursor /DB_XREF=gi:6031164 /UG=Hs.128087 coagulation factor II (thrombin) receptor /FL=gb:BC002464.1 gb:M62424.1 gb:NM_001992.2 NM_001992 coagulation factor II (thrombin) receptor F2R 2149 NM_001992 0000186 // activation of MAPKK activity // inferred from sequence or structural similarity /// 0002248 // connective tissue replacement involved in inflammatory response wound healing // inferred from direct assay /// 0003105 // negative regulation of glomerular filtration // inferred from sequence or structural similarity /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from sequence or structural similarity /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007205 // protein kinase C-activating G-protein coupled receptor signaling pathway // inferred from sequence or structural similarity /// 0007260 // tyrosine phosphorylation of STAT protein // inferred from direct assay /// 0007262 // STAT protein import into nucleus // inferred from direct assay /// 0007529 // establishment of synaptic specificity at neuromuscular junction // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0007599 // hemostasis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009611 // response to wounding // inferred from direct assay /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from sequence or structural similarity /// 0016265 // death // inferred from electronic annotation /// 0030168 // platelet activation // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030193 // regulation of blood coagulation // inferred from direct assay /// 0030194 // positive regulation of blood coagulation // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from sequence or structural similarity /// 0032651 // regulation of interleukin-1 beta production // inferred from sequence or structural similarity /// 0032967 // positive regulation of collagen biosynthetic process // inferred from direct assay /// 0035025 // positive regulation of Rho protein signal transduction // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045907 // positive regulation of vasoconstriction // inferred from sequence or structural similarity /// 0045987 // positive regulation of smooth muscle contraction // inferred from sequence or structural similarity /// 0046427 // positive regulation of JAK-STAT cascade // inferred from direct assay /// 0048873 // homeostasis of number of cells within a tissue // inferred from sequence or structural similarity /// 0051209 // release of sequestered calcium ion into cytosol // inferred from sequence or structural similarity /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from sequence or structural similarity /// 0051928 // positive regulation of calcium ion transport // inferred from sequence or structural similarity /// 0051930 // regulation of sensory perception of pain // inferred from sequence or structural similarity /// 0060155 // platelet dense granule organization // inferred by curator /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070493 // thrombin receptor signaling pathway // inferred from electronic annotation /// 1900134 // negative regulation of renin secretion into blood stream // inferred from sequence or structural similarity /// 2000484 // positive regulation of interleukin-8 secretion // inferred from direct assay /// 2000778 // positive regulation of interleukin-6 secretion // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005794 // Golgi apparatus // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031094 // platelet dense tubular network // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from sequence or structural similarity /// 0045211 // postsynaptic membrane // inferred from sequence or structural similarity 0001965 // G-protein alpha-subunit binding // inferred from sequence or structural similarity /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0015057 // thrombin receptor activity // inferred from direct assay /// 0031681 // G-protein beta-subunit binding // inferred from sequence or structural similarity 214.45 379.20 3.83 0.01 0.02 -4.48
201410_at 201410_at AI983043 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI983043 /FEA=EST /DB_XREF=gi:5810262 /DB_XREF=est:wz30b11.x1 /CLONE=IMAGE:2559549 /UG=Hs.246885 hypothetical protein FLJ20783 /FL=gb:NM_017958.1 AI983043 pleckstrin homology domain containing, family B (evectins) member 2 PLEKHB2 55041 NM_001031706 /// NM_001100623 /// NM_001267062 /// NM_001267063 /// NM_001267064 /// NM_001267065 /// NM_001267066 /// NM_001267067 /// NM_001267068 /// NM_017958 /// NR_049789 /// NR_049790 /// NR_049791 /// NR_049792 /// XM_006712607 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from electronic annotation 111.48 371.56 3.83 0.01 0.02 -4.48
57082_at 57082_at AA169780 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA169780:zp21a04.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-610062 /clone_end=3' /gb=AA169780 /gi=1748115 /ug=Hs.184482 /len=560 AA169780 low density lipoprotein receptor adaptor protein 1 LDLRAP1 26119 NM_015627 /// XM_006710558 /// XM_006710559 /// XM_006710560 /// XM_006710561 /// XM_006710562 /// XR_426598 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // non-traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // non-traceable author statement /// 0009967 // positive regulation of signal transduction // inferred from direct assay /// 0031623 // receptor internalization // inferred from mutant phenotype /// 0042632 // cholesterol homeostasis // inferred from mutant phenotype /// 0042982 // amyloid precursor protein metabolic process // inferred from mutant phenotype /// 0043393 // regulation of protein binding // inferred from mutant phenotype /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0090003 // regulation of establishment of protein localization to plasma membrane // inferred from mutant phenotype /// 0090118 // receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport // inferred from mutant phenotype /// 0090205 // positive regulation of cholesterol metabolic process // inferred by curator 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005883 // neurofilament // inferred from sequence or structural similarity /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0009925 // basal plasma membrane // inferred from direct assay /// 0030121 // AP-1 adaptor complex // inferred from direct assay /// 0030122 // AP-2 adaptor complex // inferred from direct assay /// 0030424 // axon // inferred from sequence or structural similarity /// 0055037 // recycling endosome // inferred from direct assay 0001540 // beta-amyloid binding // inferred from physical interaction /// 0001784 // phosphotyrosine binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0030159 // receptor signaling complex scaffold activity // inferred from mutant phenotype /// 0030276 // clathrin binding // inferred from direct assay /// 0035591 // signaling adaptor activity // inferred from direct assay /// 0035612 // AP-2 adaptor complex binding // inferred from direct assay /// 0035615 // clathrin adaptor activity // inferred from direct assay /// 0050750 // low-density lipoprotein particle receptor binding // inferred from physical interaction 48.92 94.11 3.82 0.01 0.02 -4.48
201206_s_at 201206_s_at NM_004587 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004587.1 /DEF=Homo sapiens ribosome binding protein 1 (dog 180kD homolog) (RRBP1), mRNA. /FEA=mRNA /GEN=RRBP1 /PROD=ribosome binding protein 1 /DB_XREF=gi:4759055 /UG=Hs.98614 ribosome binding protein 1 (dog 180kD homolog) /FL=gb:AF006751.1 gb:NM_004587.1 NM_004587 ribosome binding protein 1 RRBP1 6238 NM_001042576 /// NM_004587 0001649 // osteoblast differentiation // inferred from direct assay /// 0006412 // translation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005840 // ribosome // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 50.15 122.55 3.82 0.01 0.02 -4.48
217885_at 217885_at NM_018085 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018085.1 /DEF=Homo sapiens hypothetical protein FLJ10402 (FLJ10402), mRNA. /FEA=mRNA /GEN=FLJ10402 /PROD=hypothetical protein FLJ10402 /DB_XREF=gi:8922404 /UG=Hs.7579 hypothetical protein FLJ10402 /FL=gb:BC003604.1 gb:NM_018085.1 NM_018085 importin 9 IPO9 55705 NM_018085 /// XM_006711440 0006606 // protein import into nucleus // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from direct assay /// 0042393 // histone binding // inferred from sequence or structural similarity 79.80 241.03 3.82 0.01 0.02 -4.48
204745_x_at 204745_x_at NM_005950 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005950.1 /DEF=Homo sapiens metallothionein 1G (MT1G), mRNA. /FEA=mRNA /GEN=MT1G /PROD=metallothionein 1G /DB_XREF=gi:10835229 /UG=Hs.173451 metallothionein 1G /FL=gb:NM_005950.1 NM_005950 metallothionein 1G MT1G 4495 NM_005950 0030224 // monocyte differentiation // non-traceable author statement /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from expression pattern /// 0042117 // monocyte activation // non-traceable author statement /// 0045926 // negative regulation of growth // inferred from direct assay /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071280 // cellular response to copper ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from direct assay /// 0071294 // cellular response to zinc ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -1060.75 1481.77 -3.82 0.01 0.02 -4.48
210692_s_at 210692_s_at BC003163 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003163.1 /DEF=Homo sapiens, Similar to selectively expressed in embryonic epithelia protein-1, clone MGC:4220, mRNA, complete cds. /FEA=mRNA /PROD=Similar to selectively expressed in embryonicepithelia protein-1 /DB_XREF=gi:13111980 /UG=Hs.274453 hypothetical protein DKFZp762A227 /FL=gb:BC003163.1 BC003163 solute carrier family 43, member 3 SLC43A3 29015 NM_001278201 /// NM_001278206 /// NM_014096 /// NM_017611 /// NM_199329 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -51.80 141.50 -3.82 0.01 0.02 -4.48
214290_s_at 214290_s_at AI313324 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI313324 /FEA=EST /DB_XREF=gi:4018929 /DB_XREF=est:ta77f02.x2 /CLONE=IMAGE:2050107 /UG=Hs.795 H2A histone family, member O AI313324 histone cluster 2, H2aa3 /// histone cluster 2, H2aa4 HIST2H2AA3 /// HIST2H2AA4 8337 /// 723790 NM_001040874 /// NM_003516 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -53.10 81.03 -3.82 0.01 0.02 -4.48
209449_at 209449_at AF196468 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF196468.1 /DEF=Homo sapiens SMX5-like protein mRNA, complete cds. /FEA=mRNA /PROD=SMX5-like protein /DB_XREF=gi:11225486 /UG=Hs.103106 U6 snRNA-associated Sm-like protein /FL=gb:NM_021177.1 gb:AF196468.1 gb:AF136977.1 gb:AF182288.1 AF196468 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) LSM2 57819 NM_021177 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017070 // U6 snRNA binding // non-traceable author statement /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 49.22 132.11 3.82 0.01 0.02 -4.48
212015_x_at 212015_x_at BF690062 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF690062 /FEA=EST /DB_XREF=gi:11975470 /DB_XREF=est:602186366T1 /CLONE=IMAGE:4298440 /UG=Hs.172550 polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) BF690062 microRNA 4745 /// polypyrimidine tract binding protein 1 MIR4745 /// PTBP1 5725 /// 100616459 NM_002819 /// NM_031990 /// NM_031991 /// NM_175847 /// NR_039900 /// XM_005259597 /// XM_005259598 /// XR_244034 /// XR_244035 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051148 // negative regulation of muscle cell differentiation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008187 // poly-pyrimidine tract binding // traceable author statement /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 125.22 537.16 3.82 0.01 0.02 -4.48
204478_s_at 204478_s_at NM_002871 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002871.1 /DEF=Homo sapiens RAB interacting factor (RABIF), mRNA. /FEA=mRNA /GEN=RABIF /PROD=RAB interacting factor /DB_XREF=gi:4506378 /UG=Hs.90875 RAB interacting factor /FL=gb:U74324.1 gb:NM_002871.1 NM_002871 RAB interacting factor RABIF 5877 NM_002871 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // non-traceable author statement /// 0043087 // regulation of GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // non-traceable author statement /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0061025 // membrane fusion // traceable author statement 0005085 // guanyl-nucleotide exchange factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 50.05 106.88 3.82 0.01 0.02 -4.48
211148_s_at 211148_s_at AF187858 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF187858.1 /DEF=Homo sapiens angiopoietin-2 isoform-1 mRNA, complete cds, alternatively spliced. /FEA=mRNA /PROD=angiopoietin-2 isoform-1 /DB_XREF=gi:8570646 /UG=Hs.115181 angiopoietin 2 /FL=gb:AF187858.1 AF187858 angiopoietin 2 ANGPT2 285 NM_001118887 /// NM_001118888 /// NM_001147 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009314 // response to radiation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0010812 // negative regulation of cell-substrate adhesion // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0048014 // Tie signaling pathway // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0050928 // negative regulation of positive chemotaxis // inferred from direct assay /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0072012 // glomerulus vasculature development // inferred from sequence or structural similarity 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 71.05 122.55 3.81 0.01 0.02 -4.48
220395_at 220395_at NM_018602 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018602.1 /DEF=Homo sapiens hypothetical protein PRO1472 (PRO1472), mRNA. /FEA=mRNA /GEN=PRO1472 /PROD=hypothetical protein PRO1472 /DB_XREF=gi:8924043 /UG=Hs.154662 DnaJ (Hsp40) homolog, subfamily A, member 4 /FL=gb:AF116663.1 gb:NM_018602.1 NM_018602 DnaJ (Hsp40) homolog, subfamily A, member 4 DNAJA4 55466 NM_001130182 /// NM_001130183 /// NM_018602 /// XM_005254535 /// XM_006720601 0006457 // protein folding // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0042026 // protein refolding // inferred from direct assay /// 0090084 // negative regulation of inclusion body assembly // inferred from direct assay 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005524 // ATP binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction -82.00 178.65 -3.81 0.01 0.02 -4.48
207657_x_at 207657_x_at NM_002270 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002270.1 /DEF=Homo sapiens karyopherin (importin) beta 2 (KPNB2), mRNA. /FEA=mRNA /GEN=KPNB2 /PROD=karyopherin (importin) beta 2 /DB_XREF=gi:4504906 /UG=Hs.168075 karyopherin (importin) beta 2 /FL=gb:U70322.1 gb:NM_002270.1 NM_002270 transportin 1 TNPO1 3842 NM_002270 /// NM_153188 /// XM_005248500 /// XM_005248501 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -422.75 1152.50 -3.81 0.01 0.02 -4.48
200936_at 200936_at NM_000973 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000973.1 /DEF=Homo sapiens ribosomal protein L8 (RPL8), mRNA. /FEA=mRNA /GEN=RPL8 /PROD=ribosomal protein L8 /DB_XREF=gi:4506662 /UG=Hs.178551 ribosomal protein L8 /FL=gb:BC000077.1 gb:NM_000973.1 NM_000973 ribosomal protein L8 RPL8 6132 NM_000973 /// NM_033301 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -251.70 2009.03 -3.81 0.01 0.02 -4.48
221743_at 221743_at AI472139 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI472139 /FEA=EST /DB_XREF=gi:4334229 /DB_XREF=est:tj86a10.x1 /CLONE=IMAGE:2148378 /UG=Hs.9683 DnaJ (Hsp40) homolog, subfamily C, member 3 AI472139 CUGBP, Elav-like family member 1 CELF1 10658 NM_001025596 /// NM_001172639 /// NM_001172640 /// NM_006560 /// NM_198700 /// XM_005252754 /// XM_005252755 /// XM_005252756 /// XM_006718122 /// XM_006718123 /// XM_006718124 /// XM_006718125 /// XM_006718126 /// XM_006718127 /// XM_006718128 /// XM_006718129 /// XM_006718130 /// XM_006718131 0006376 // mRNA splice site selection // inferred from sequence or structural similarity /// 0006397 // mRNA processing // traceable author statement /// 0007281 // germ cell development // non-traceable author statement /// 0007286 // spermatid development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009790 // embryo development // non-traceable author statement /// 0016246 // RNA interference // non-traceable author statement /// 0017148 // negative regulation of translation // non-traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000900 // translation repressor activity, nucleic acid binding // non-traceable author statement /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0042835 // BRE binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 115.20 311.85 3.81 0.01 0.02 -4.48
218050_at 218050_at NM_016617 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016617.1 /DEF=Homo sapiens hypothetical protein (BM-002), mRNA. /FEA=mRNA /GEN=BM-002 /PROD=hypothetical protein /DB_XREF=gi:7705299 /UG=Hs.5862 hypothetical protein /FL=gb:BC005193.1 gb:AF208844.1 gb:NM_016617.1 NM_016617 ubiquitin-fold modifier 1 UFM1 51569 NM_001286703 /// NM_001286704 /// NM_001286705 /// NM_001286706 /// NM_016617 /// NR_104584 /// NR_104585 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0071569 // protein ufmylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 50.12 175.79 3.81 0.01 0.02 -4.48
207239_s_at 207239_s_at NM_006201 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006201.1 /DEF=Homo sapiens PCTAIRE protein kinase 1 (PCTK1), mRNA. /FEA=mRNA /GEN=PCTK1 /PROD=PCTAIRE protein kinase 1 /DB_XREF=gi:5453859 /UG=Hs.171834 PCTAIRE protein kinase 1 /FL=gb:NM_006201.1 NM_006201 cyclin-dependent kinase 16 CDK16 5127 NM_001170460 /// NM_006201 /// NM_033018 /// XM_005272614 /// XM_005272615 /// XM_006724534 /// XM_006724535 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006887 // exocytosis // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030252 // growth hormone secretion // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0061178 // regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -36.17 126.86 -3.81 0.01 0.02 -4.48
213136_at 213136_at AI828880 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI828880 /FEA=EST /DB_XREF=gi:5449551 /DB_XREF=est:wj37b02.x1 /CLONE=IMAGE:2404971 /UG=Hs.82829 protein tyrosine phosphatase, non-receptor type 2 AI828880 protein tyrosine phosphatase, non-receptor type 2 PTPN2 5771 NM_001207013 /// NM_002828 /// NM_080422 /// NM_080423 /// XM_005258124 /// XM_005258125 /// XM_005258126 /// XM_005258127 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0010804 // negative regulation of tumor necrosis factor-mediated signaling pathway // inferred from sequence or structural similarity /// 0010888 // negative regulation of lipid storage // inferred from sequence or structural similarity /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0042512 // negative regulation of tyrosine phosphorylation of Stat1 protein // inferred from direct assay /// 0042512 // negative regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // inferred from direct assay /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from sequence or structural similarity /// 0042527 // negative regulation of tyrosine phosphorylation of Stat6 protein // inferred from electronic annotation /// 0042527 // negative regulation of tyrosine phosphorylation of Stat6 protein // inferred from mutant phenotype /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0045650 // negative regulation of macrophage differentiation // inferred from sequence or structural similarity /// 0045722 // positive regulation of gluconeogenesis // inferred from sequence or structural similarity /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0050728 // negative regulation of inflammatory response // inferred from sequence or structural similarity /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050922 // negative regulation of chemotaxis // inferred from sequence or structural similarity /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0060336 // negative regulation of interferon-gamma-mediated signaling pathway // inferred from sequence or structural similarity /// 0060339 // negative regulation of type I interferon-mediated signaling pathway // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from mutant phenotype /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 1902202 // regulation of hepatocyte growth factor receptor signaling pathway // inferred from mutant phenotype /// 1902206 // negative regulation of interleukin-2-mediated signaling pathway // inferred from mutant phenotype /// 1902212 // negative regulation of prolactin signaling pathway // inferred from sequence or structural similarity /// 1902215 // negative regulation of interleukin-4-mediated signaling pathway // inferred from electronic annotation /// 1902215 // negative regulation of interleukin-4-mediated signaling pathway // inferred from mutant phenotype /// 1902227 // negative regulation of macrophage colony-stimulating factor signaling pathway // inferred from sequence or structural similarity /// 1902233 // negative regulation of positive thymic T cell selection // inferred from sequence or structural similarity /// 2000587 // negative regulation of platelet-derived growth factor receptor-beta signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction -47.38 93.86 -3.81 0.01 0.02 -4.48
219363_s_at 219363_s_at NM_015942 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015942.1 /DEF=Homo sapiens CGI-12 protein (LOC51001), mRNA. /FEA=mRNA /GEN=LOC51001 /PROD=CGI-12 protein /DB_XREF=gi:7705587 /UG=Hs.46680 CGI-12 protein /FL=gb:AF132946.1 gb:NM_015942.1 NM_015942 mitochondrial transcription termination factor 3 MTERF3 51001 NM_001286643 /// NM_015942 /// XM_005250926 /// XM_005250927 /// XM_006716568 /// XM_006716569 /// XM_006716570 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay 35.92 80.11 3.81 0.01 0.02 -4.48
208854_s_at 208854_s_at AA586774 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA586774 /FEA=EST /DB_XREF=gi:2397588 /DB_XREF=est:nn75a04.s1 /CLONE=IMAGE:1089678 /UG=Hs.168913 serinethreonine kinase 24 (Ste20, yeast homolog) /FL=gb:AF083420.1 AA586774 serine/threonine kinase 24 STK24 8428 NM_001032296 /// NM_001286649 /// NM_003576 /// XM_005254078 /// XM_005254079 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048679 // regulation of axon regeneration // inferred from mutant phenotype /// 0097194 // execution phase of apoptosis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -78.50 275.38 -3.81 0.01 0.02 -4.48
211710_x_at 211710_x_at BC005817 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005817.1 /DEF=Homo sapiens, ribosomal protein L4, clone MGC:11073, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L4 /DB_XREF=gi:13543303 /FL=gb:BC005817.1 BC005817 ribosomal protein L4 /// small nucleolar RNA, C/D box 16 /// small nucleolar RNA, C/D box 18A /// small nucleolar RNA, C/D box 18B /// small nucleolar RNA, C/D box 18C RPL4 /// SNORD16 /// SNORD18A /// SNORD18B /// SNORD18C 6124 /// 595097 /// 595098 /// 595099 /// 595100 NM_000968 /// NR_002440 /// NR_002441 /// NR_002442 /// NR_002443 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -780.47 2680.36 -3.81 0.01 0.02 -4.48
201238_s_at 201238_s_at BC005338 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005338.1 /DEF=Homo sapiens, capping protein (actin filament) muscle Z-line, alpha 2, clone MGC:12426, mRNA, complete cds. /FEA=mRNA /PROD=capping protein (actin filament) muscle Z-line,alpha 2 /DB_XREF=gi:13529130 /UG=Hs.75546 capping protein (actin filament) muscle Z-line, alpha 2 /FL=gb:BC005338.1 gb:NM_006136.1 gb:U03269.1 BC005338 capping protein (actin filament) muscle Z-line, alpha 2 CAPZA2 830 NM_006136 0006461 // protein complex assembly // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0051693 // actin filament capping // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071203 // WASH complex // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 101.53 659.61 3.81 0.01 0.02 -4.48
206061_s_at 206061_s_at NM_030621 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030621.1 /DEF=Homo sapiens helicase-moi (KIAA0928), mRNA. /FEA=mRNA /GEN=KIAA0928 /PROD=helicase-moi /DB_XREF=gi:13449288 /UG=Hs.87889 helicase-moi /FL=gb:NM_030621.1 gb:AB028449.1 NM_030621 dicer 1, ribonuclease type III DICER1 23405 NM_001195573 /// NM_001271282 /// NM_001291628 /// NM_030621 /// NM_177438 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001942 // hair follicle development // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010070 // zygote asymmetric cell division // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010626 // negative regulation of Schwann cell proliferation // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0014040 // positive regulation of Schwann cell differentiation // inferred from sequence or structural similarity /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021675 // nerve development // inferred from sequence or structural similarity /// 0021889 // olfactory bulb interneuron differentiation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030422 // production of siRNA involved in RNA interference // inferred from direct assay /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from mutant phenotype /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031054 // pre-miRNA processing // inferred from direct assay /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0031643 // positive regulation of myelination // inferred from sequence or structural similarity /// 0032290 // peripheral nervous system myelin formation // inferred from sequence or structural similarity /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from sequence or structural similarity /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042487 // regulation of odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045069 // regulation of viral genome replication // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048536 // spleen development // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048713 // regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0055013 // cardiac muscle cell development // inferred from electronic annotation /// 0060119 // inner ear receptor cell development // inferred from electronic annotation /// 0060576 // intestinal epithelial cell development // inferred from electronic annotation /// 0070173 // regulation of enamel mineralization // inferred from electronic annotation /// 0071335 // hair follicle cell proliferation // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from direct assay /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 2000630 // positive regulation of miRNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016442 // RISC complex // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004525 // ribonuclease III activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0035198 // miRNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 68.42 65.31 3.80 0.01 0.02 -4.48
221881_s_at 221881_s_at AI638420 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI638420 /FEA=EST /DB_XREF=gi:4690654 /DB_XREF=est:tt31g07.x1 /CLONE=IMAGE:2242428 /UG=Hs.25035 chloride intracellular channel 4 AI638420 chloride intracellular channel 4 CLIC4 25932 NM_013943 0001525 // angiogenesis // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // non-traceable author statement /// 0007035 // vacuolar acidification // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0030154 // cell differentiation // traceable author statement /// 0030216 // keratinocyte differentiation // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0034765 // regulation of ion transmembrane transport // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // non-traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // non-traceable author statement /// 0061299 // retina vasculature morphogenesis in camera-type eye // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from mutant phenotype /// 1902476 // chloride transmembrane transport // inferred from electronic annotation /// 1902476 // chloride transmembrane transport // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0005911 // cell-cell junction // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0015629 // actin cytoskeleton // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -122.50 273.85 -3.80 0.01 0.02 -4.48
212414_s_at 212414_s_at D50918 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D50918.1 /DEF=Human mRNA for KIAA0128 gene, partial cds. /FEA=mRNA /GEN=KIAA0128 /DB_XREF=gi:1469178 /UG=Hs.90998 KIAA0128 protein; septin 2 D50918 glyoxylate reductase 1 homolog (Arabidopsis) /// septin 6 GLYR1 /// SEPT6 23157 /// 84656 NM_015129 /// NM_032569 /// NM_145799 /// NM_145800 /// NM_145802 /// XM_005255637 /// XM_005255638 /// XM_005255639 /// XM_005255640 /// XM_005262400 /// XM_006724748 /// XM_006724749 /// XM_006724750 /// XR_243321 0000910 // cytokinesis // traceable author statement /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 55.37 139.36 3.80 0.01 0.02 -4.48
210517_s_at 210517_s_at AB003476 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB003476.1 /DEF=Homo sapiens mRNA for gravin, complete cds. /FEA=mRNA /PROD=gravin /DB_XREF=gi:2081606 /UG=Hs.788 A kinase (PRKA) anchor protein (gravin) 12 /FL=gb:AB003476.1 AB003476 A kinase (PRKA) anchor protein 12 AKAP12 9590 NM_005100 /// NM_144497 /// XM_005267233 /// XM_005267234 /// XM_005267235 0006605 // protein targeting // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0010739 // positive regulation of protein kinase A signaling // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0090036 // regulation of protein kinase C signaling // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from physical interaction /// 0051018 // protein kinase A binding // inferred from electronic annotation -414.70 2180.45 -3.80 0.01 0.02 -4.48
209049_s_at 209049_s_at BC001004 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001004.1 /DEF=Homo sapiens, clone MGC:5439, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:5439) /DB_XREF=gi:12654362 /UG=Hs.75871 protein kinase C binding protein 1 /FL=gb:BC001004.1 BC001004 zinc finger, MYND-type containing 8 ZMYND8 23613 NM_001281769 /// NM_001281771 /// NM_001281772 /// NM_001281773 /// NM_001281774 /// NM_001281775 /// NM_001281776 /// NM_001281777 /// NM_001281778 /// NM_001281779 /// NM_001281780 /// NM_001281781 /// NM_001281782 /// NM_001281783 /// NM_001281784 /// NM_012408 /// NM_183047 /// NM_183048 /// XM_005260356 /// XM_005260358 /// XM_005260360 /// XM_005260361 /// XM_005260362 /// XM_005260364 /// XM_005260365 /// XM_005260366 /// XM_005260369 /// XM_005260371 /// XM_005260377 /// XM_006723760 /// XM_006723761 /// XM_006723762 /// XM_006723763 /// XM_006723764 /// XM_006723765 /// XM_006723766 /// XM_006723767 /// XM_006723768 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity 0001106 // RNA polymerase II transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070491 // repressing transcription factor binding // inferred from sequence or structural similarity -233.73 543.66 -3.80 0.01 0.02 -4.48
201684_s_at 201684_s_at BF001668 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF001668 /FEA=EST /DB_XREF=gi:10701943 /DB_XREF=est:7g91e03.x1 /CLONE=IMAGE:3313852 /UG=Hs.194035 KIAA0737 gene product /FL=gb:AB018280.1 gb:NM_014828.1 BF001668 TOX high mobility group box family member 4 TOX4 9878 NM_014828 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 58.90 171.25 3.80 0.01 0.02 -4.48
208808_s_at 208808_s_at BC000903 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000903.1 /DEF=Homo sapiens, high-mobility group (nonhistone chromosomal) protein 2, clone MGC:5234, mRNA, complete cds. /FEA=mRNA /PROD=high-mobility group (nonhistone chromosomal)protein 2 /DB_XREF=gi:12654170 /UG=Hs.80684 high-mobility group (nonhistone chromosomal) protein 2 /FL=gb:BC000903.1 gb:BC001063.1 BC000903 high mobility group box 2 HMGB2 3148 NM_001130688 /// NM_001130689 /// NM_002129 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0006265 // DNA topological change // inferred from sequence or structural similarity /// 0006288 // base-excision repair, DNA ligation // inferred from direct assay /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006325 // chromatin organization // non-traceable author statement /// 0006334 // nucleosome assembly // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007289 // spermatid nucleus differentiation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0032075 // positive regulation of nuclease activity // inferred from direct assay /// 0033151 // V(D)J recombination // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043388 // positive regulation of DNA binding // inferred from direct assay /// 0045648 // positive regulation of erythrocyte differentiation // inferred from mutant phenotype /// 0045654 // positive regulation of megakaryocyte differentiation // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0050918 // positive chemotaxis // inferred from direct assay /// 0051103 // DNA ligation involved in DNA repair // inferred from sequence or structural similarity /// 0060326 // cell chemotaxis // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation 0000793 // condensed chromosome // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from mutant phenotype /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008301 // DNA binding, bending // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0042056 // chemoattractant activity // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050786 // RAGE receptor binding // inferred from genetic interaction -161.07 624.26 -3.80 0.01 0.02 -4.48
201211_s_at 201211_s_at AF061337 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF061337.1 /DEF=Homo sapiens DEAD box RNA helicase DDX3 (DDX3) mRNA, complete cds. /FEA=mRNA /GEN=DDX3 /PROD=DEAD box RNA helicase DDX3 /DB_XREF=gi:3523149 /UG=Hs.147916 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 3 /FL=gb:NM_001356.2 gb:U50553.1 gb:AF000982.1 gb:AF061337.1 AF061337 DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked DDX3X 1654 NM_001193416 /// NM_001193417 /// NM_001356 /// NM_024005 0002376 // immune system process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 0009615 // response to virus // inferred from direct assay /// 0010501 // RNA secondary structure unwinding // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0031333 // negative regulation of protein complex assembly // inferred from direct assay /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0032728 // positive regulation of interferon-beta production // traceable author statement /// 0034063 // stress granule assembly // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042256 // mature ribosome assembly // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045948 // positive regulation of translational initiation // inferred from mutant phenotype /// 0071243 // cellular response to arsenic-containing substance // inferred from direct assay /// 0071470 // cellular response to osmotic stress // inferred from direct assay /// 0071651 // positive regulation of chemokine (C-C motif) ligand 5 production // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004004 // ATP-dependent RNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0008143 // poly(A) binding // inferred from direct assay /// 0008190 // eukaryotic initiation factor 4E binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0031369 // translation initiation factor binding // inferred from direct assay /// 0035613 // RNA stem-loop binding // inferred from direct assay /// 0043024 // ribosomal small subunit binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay -62.65 175.65 -3.80 0.01 0.02 -4.48
205067_at 205067_at NM_000576 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000576.1 /DEF=Homo sapiens interleukin 1, beta (IL1B), mRNA. /FEA=mRNA /GEN=IL1B /PROD=interleukin 1, beta /DB_XREF=gi:10835144 /UG=Hs.126256 interleukin 1, beta /FL=gb:NM_000576.1 gb:K02770.1 gb:M15330.1 gb:M54933.1 NM_000576 interleukin 1, beta IL1B 3553 NM_000576 /// XM_006712496 0000165 // MAPK cascade // inferred from mutant phenotype /// 0000187 // activation of MAPK activity // inferred from direct assay /// 0001660 // fever generation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // non-traceable author statement /// 0002711 // positive regulation of T cell mediated immunity // inferred by curator /// 0006915 // apoptotic process // traceable author statement /// 0006954 // inflammatory response // inferred from direct assay /// 0006954 // inflammatory response // non-traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007566 // embryo implantation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009743 // response to carbohydrate // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from direct assay /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010829 // negative regulation of glucose transport // inferred from sequence or structural similarity /// 0014805 // smooth muscle adaptation // non-traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0030213 // hyaluronan biosynthetic process // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030730 // sequestering of triglyceride // inferred from direct assay /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred by curator /// 0031622 // positive regulation of fever generation // inferred from sequence or structural similarity /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from direct assay /// 0032308 // positive regulation of prostaglandin secretion // inferred from sequence or structural similarity /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032611 // interleukin-1 beta production // inferred from electronic annotation /// 0032725 // positive regulation of granulocyte macrophage colony-stimulating factor production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032755 // positive regulation of interleukin-6 production // traceable author statement /// 0032757 // positive regulation of interleukin-8 production // inferred from direct assay /// 0033129 // positive regulation of histone phosphorylation // non-traceable author statement /// 0033198 // response to ATP // inferred from electronic annotation /// 0034116 // positive regulation of heterotypic cell-cell adhesion // inferred from direct assay /// 0034116 // positive regulation of heterotypic cell-cell adhesion // non-traceable author statement /// 0035066 // positive regulation of histone acetylation // non-traceable author statement /// 0035234 // ectopic germ cell programmed cell death // inferred from electronic annotation /// 0035505 // positive regulation of myosin light chain kinase activity // inferred from direct assay /// 0035690 // cellular response to drug // inferred from direct assay /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042221 // response to chemical // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from direct assay /// 0043122 // regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043491 // protein kinase B signaling // inferred from mutant phenotype /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from mutant phenotype /// 0045410 // positive regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0045833 // negative regulation of lipid metabolic process // inferred from sequence or structural similarity /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0046827 // positive regulation of protein export from nucleus // non-traceable author statement /// 0050796 // regulation of insulin secretion // inferred from direct assay /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050995 // negative regulation of lipid catabolic process // inferred from direct assay /// 0050996 // positive regulation of lipid catabolic process // inferred from sequence or structural similarity /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060355 // positive regulation of cell adhesion molecule production // non-traceable author statement /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // inferred from direct assay /// 0070164 // negative regulation of adiponectin secretion // inferred from sequence or structural similarity /// 0070487 // monocyte aggregation // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from direct assay /// 0071407 // cellular response to organic cyclic compound // inferred from direct assay /// 0071639 // positive regulation of monocyte chemotactic protein-1 production // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from mutant phenotype /// 0005829 // cytosol // traceable author statement /// 0030141 // secretory granule // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from mutant phenotype /// 0005149 // interleukin-1 receptor binding // non-traceable author statement /// 0019904 // protein domain specific binding // inferred from physical interaction -39.85 61.40 -3.80 0.01 0.02 -4.48
212033_at 212033_at BF055107 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF055107 /FEA=EST /DB_XREF=gi:10809003 /DB_XREF=est:7j75a05.x1 /CLONE=IMAGE:3392240 /UG=Hs.180789 S164 protein BF055107 RNA binding motif protein 25 RBM25 58517 NM_021239 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from direct assay /// 0097194 // execution phase of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 73.30 215.38 3.80 0.01 0.02 -4.48
213881_x_at 213881_x_at AI971724 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI971724 /FEA=EST /DB_XREF=gi:5768550 /DB_XREF=est:wr07a04.x1 /CLONE=IMAGE:2480814 /UG=Hs.180139 SMT3 (suppressor of mif two 3, yeast) homolog 2 AI971724 small ubiquitin-related modifier 2-like /// small ubiquitin-like modifier 2 /// small ubiquitin-like modifier 3 LOC101929087 /// SUMO2 /// SUMO3 6612 /// 6613 /// 101929087 NM_001005849 /// NM_001286416 /// NM_006936 /// NM_006937 /// XM_005250081 /// XM_005276013 /// XM_005276311 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // traceable author statement /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000776 // kinetochore // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 187.10 1422.50 3.80 0.01 0.02 -4.48
212127_at 212127_at BE379408 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE379408 /FEA=EST /DB_XREF=gi:9324773 /DB_XREF=est:601237213F1 /CLONE=IMAGE:3609315 /UG=Hs.183800 Ran GTPase activating protein 1 /FL=gb:NM_002883.1 BE379408 Ran GTPase activating protein 1 RANGAP1 5905 NM_001278651 /// NM_002883 /// XM_005261695 /// XM_005261696 /// XM_006724289 0000278 // mitotic cell cycle // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0032853 // positive regulation of Ran GTPase activity // inferred from electronic annotation /// 0032853 // positive regulation of Ran GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0046826 // negative regulation of protein export from nucleus // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005098 // Ran GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -59.10 177.32 -3.80 0.01 0.02 -4.48
200081_s_at 200081_s_at BE741754 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE741754 /FEA=EST /DB_XREF=gi:10155746 /DB_XREF=est:601595220F1 /CLONE=IMAGE:3949109 /UG=Hs.241507 ribosomal protein S6 BE741754 ribosomal protein S6 RPS6 6194 NM_001010 0000028 // ribosomal small subunit assembly // inferred from electronic annotation /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0031929 // TOR signaling // inferred from direct assay /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -633.40 3072.05 -3.79 0.01 0.02 -4.48
203743_s_at 203743_s_at NM_003211 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003211.1 /DEF=Homo sapiens thymine-DNA glycosylase (TDG), mRNA. /FEA=mRNA /GEN=TDG /PROD=thymine-DNA glycosylase /DB_XREF=gi:4507422 /UG=Hs.173824 thymine-DNA glycosylase /FL=gb:U51166.1 gb:NM_003211.1 NM_003211 thymine-DNA glycosylase TDG 6996 NM_001008411 /// NM_003211 /// XM_005269125 /// XR_429113 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // inferred from direct assay /// 0006284 // base-excision repair // traceable author statement /// 0006285 // base-excision repair, AP site formation // traceable author statement /// 0006298 // mismatch repair // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from electronic annotation /// 0035562 // negative regulation of chromatin binding // inferred from electronic annotation /// 0040029 // regulation of gene expression, epigenetic // inferred from sequence or structural similarity /// 0045008 // depyrimidination // traceable author statement /// 0080111 // DNA demethylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation 0001104 // RNA polymerase II transcription cofactor activity // inferred from electronic annotation /// 0003684 // damaged DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008263 // pyrimidine-specific mismatch base pair DNA N-glycosylase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // inferred from direct assay /// 0030983 // mismatched DNA binding // inferred from direct assay /// 0032183 // SUMO binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043566 // structure-specific DNA binding // inferred from sequence or structural similarity 57.43 162.29 3.79 0.01 0.02 -4.48
212097_at 212097_at AU147399 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU147399 /FEA=EST /DB_XREF=gi:11008920 /DB_XREF=est:AU147399 /CLONE=MAMMA1000563 /UG=Hs.74034 Homo sapiens clone 24651 mRNA sequence AU147399 caveolin 1, caveolae protein, 22kDa CAV1 857 NM_001172895 /// NM_001172896 /// NM_001172897 /// NM_001753 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000165 // MAPK cascade // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002931 // response to ischemia // inferred from electronic annotation /// 0003057 // regulation of the force of heart contraction by chemical signal // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from sequence or structural similarity /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from sequence or structural similarity /// 0006940 // regulation of smooth muscle contraction // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0007595 // lactation // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008104 // protein localization // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from expression pattern /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from sequence or structural similarity /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016050 // vesicle organization // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // inferred from sequence or structural similarity /// 0019915 // lipid storage // inferred from sequence or structural similarity /// 0030193 // regulation of blood coagulation // inferred from mutant phenotype /// 0030301 // cholesterol transport // traceable author statement /// 0030514 // negative regulation of BMP signaling pathway // inferred from direct assay /// 0030857 // negative regulation of epithelial cell differentiation // inferred from sequence or structural similarity /// 0030879 // mammary gland development // inferred from sequence or structural similarity /// 0031295 // T cell costimulation // inferred from direct assay /// 0031397 // negative regulation of protein ubiquitination // inferred from mutant phenotype /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032507 // maintenance of protein location in cell // inferred from sequence or structural similarity /// 0032570 // response to progesterone // inferred from direct assay /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0033484 // nitric oxide homeostasis // inferred from sequence or structural similarity /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // traceable author statement /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043409 // negative regulation of MAPK cascade // inferred from sequence or structural similarity /// 0043627 // response to estrogen // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045907 // positive regulation of vasoconstriction // inferred from sequence or structural similarity /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0046426 // negative regulation of JAK-STAT cascade // inferred from sequence or structural similarity /// 0048550 // negative regulation of pinocytosis // inferred from mutant phenotype /// 0048554 // positive regulation of metalloenzyme activity // inferred from sequence or structural similarity /// 0050900 // leukocyte migration // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051480 // cytosolic calcium ion homeostasis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from sequence or structural similarity /// 0051899 // membrane depolarization // inferred from sequence or structural similarity /// 0052547 // regulation of peptidase activity // inferred from sequence or structural similarity /// 0055074 // calcium ion homeostasis // inferred from sequence or structural similarity /// 0060056 // mammary gland involution // inferred from sequence or structural similarity /// 0070836 // caveola assembly // inferred from mutant phenotype /// 0071455 // cellular response to hyperoxia // inferred from mutant phenotype /// 0072584 // caveolin-mediated endocytosis // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 0097190 // apoptotic signaling pathway // inferred from mutant phenotype /// 2000286 // receptor internalization involved in canonical Wnt signaling pathway // inferred from mutant phenotype /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // traceable author statement /// 0002080 // acrosomal membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // non-traceable author statement /// 0005929 // cilium // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005102 // receptor binding // inferred from physical interaction /// 0005113 // patched binding // non-traceable author statement /// 0005198 // structural molecule activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0015485 // cholesterol binding // traceable author statement /// 0016504 // peptidase activator activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from physical interaction /// 0032947 // protein complex scaffold // traceable author statement /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -560.07 3105.34 -3.79 0.01 0.02 -4.48
206857_s_at 206857_s_at NM_004116 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004116.1 /DEF=Homo sapiens FK506-binding protein 1B (12.6 kD) (FKBP1B), mRNA. /FEA=mRNA /GEN=FKBP1B /PROD=FK506-binding protein 1B (12.6 kD) /DB_XREF=gi:4758379 /UG=Hs.77643 FK506-binding protein 1B (12.6 kD) /FL=gb:NM_004116.1 gb:D38037.1 gb:L37086.1 NM_004116 FK506 binding protein 1B, 12.6 kDa FKBP1B 2281 NM_004116 /// NM_054033 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006458 // 'de novo' protein folding // traceable author statement /// 0006936 // muscle contraction // non-traceable author statement /// 0006939 // smooth muscle contraction // inferred from electronic annotation /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010459 // negative regulation of heart rate // inferred from sequence or structural similarity /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // not recorded /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred from sequence or structural similarity /// 0014808 // release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from electronic annotation /// 0018208 // peptidyl-proline modification // /// 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0022417 // protein maturation by protein folding // traceable author statement /// 0030073 // insulin secretion // inferred from electronic annotation /// 0032513 // negative regulation of protein phosphatase type 2B activity // inferred from direct assay /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0035584 // calcium-mediated signaling using intracellular calcium source // traceable author statement /// 0042026 // protein refolding // traceable author statement /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0048680 // positive regulation of axon regeneration // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051284 // positive regulation of sequestering of calcium ion // inferred from direct assay /// 0051480 // cytosolic calcium ion homeostasis // inferred from direct assay /// 0051480 // cytosolic calcium ion homeostasis // inferred from genetic interaction /// 0051775 // response to redox state // inferred from direct assay /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from mutant phenotype /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0061077 // chaperone-mediated protein folding // not recorded /// 0061179 // negative regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // traceable author statement /// 0086064 // cell communication by electrical coupling involved in cardiac conduction // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred by curator /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0030018 // Z disc // inferred from direct assay /// 0033017 // sarcoplasmic reticulum membrane // not recorded /// 0034704 // calcium channel complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005219 // ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005528 // FK506 binding // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // inferred from direct assay /// 0030551 // cyclic nucleotide binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from sequence or structural similarity 46.20 105.05 3.79 0.01 0.02 -4.48
219437_s_at 219437_s_at NM_013275 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013275.1 /DEF=Homo sapiens nasopharyngeal carcinoma susceptibility protein (LZ16), mRNA. /FEA=mRNA /GEN=LZ16 /PROD=nasopharyngeal carcinoma susceptibility protein /DB_XREF=gi:7019448 /UG=Hs.42390 nasopharyngeal carcinoma susceptibility protein /FL=gb:AF121775.1 gb:NM_013275.1 NM_013275 ankyrin repeat domain 11 ANKRD11 29123 NM_001256182 /// NM_001256183 /// NM_013275 /// NR_045839 /// XM_006721181 /// XM_006721182 /// XM_006721183 /// XM_006721184 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from mutant phenotype /// 0048705 // skeletal system morphogenesis // inferred from mutant phenotype /// 0060323 // head morphogenesis // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from mutant phenotype /// 0060348 // bone development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation -41.50 96.10 -3.78 0.01 0.02 -4.48
202649_x_at 202649_x_at NM_001022 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001022.1 /DEF=Homo sapiens ribosomal protein S19 (RPS19), mRNA. /FEA=mRNA /GEN=RPS19 /PROD=ribosomal protein S19 /DB_XREF=gi:4506694 /UG=Hs.298262 ribosomal protein S19 /FL=gb:BC000023.1 gb:M81757.1 gb:NM_001022.1 NM_001022 ribosomal protein S19 RPS19 6223 NM_001022 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000462 // maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from mutant phenotype /// 0002548 // monocyte chemotaxis // inferred from direct assay /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007000 // nucleolus organization // inferred from mutant phenotype /// 0009991 // response to extracellular stimulus // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from mutant phenotype /// 0030490 // maturation of SSU-rRNA // inferred from mutant phenotype /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051262 // protein tetramerization // inferred from direct assay /// 0051272 // positive regulation of cellular component movement // traceable author statement /// 0060265 // positive regulation of respiratory burst involved in inflammatory response // inferred from direct assay /// 0060266 // negative regulation of respiratory burst involved in inflammatory response // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -969.93 3620.86 -3.78 0.01 0.02 -4.48
202907_s_at 202907_s_at NM_002485 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002485.2 /DEF=Homo sapiens Nijmegen breakage syndrome 1 (nibrin) (NBS1), mRNA. /FEA=mRNA /GEN=NBS1 /PROD=nibrin /DB_XREF=gi:6996019 /UG=Hs.25812 Nijmegen breakage syndrome 1 (nibrin) /FL=gb:AF058696.1 gb:AF051334.1 gb:NM_002485.2 NM_002485 nibrin NBN 4683 NM_001024688 /// NM_002485 /// XM_005250923 /// XR_242390 /// XR_242391 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // inferred from direct assay /// 0000723 // telomere maintenance // inferred from mutant phenotype /// 0000724 // double-strand break repair via homologous recombination // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // inferred from direct assay /// 0006302 // double-strand break repair // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007093 // mitotic cell cycle checkpoint // inferred from direct assay /// 0007095 // mitotic G2 DNA damage checkpoint // inferred from direct assay /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0030174 // regulation of DNA-dependent DNA replication initiation // traceable author statement /// 0030330 // DNA damage response, signal transduction by p53 class mediator // traceable author statement /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032508 // DNA duplex unwinding // inferred from mutant phenotype /// 0033674 // positive regulation of kinase activity // inferred from direct assay /// 0045190 // isotype switching // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005657 // replication fork // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0030870 // Mre11 complex // inferred from direct assay /// 0035861 // site of double-strand break // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from direct assay 0003684 // damaged DNA binding // inferred by curator /// 0004003 // ATP-dependent DNA helicase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction -41.13 263.54 -3.78 0.01 0.02 -4.48
212442_s_at 212442_s_at BG289001 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG289001 /FEA=EST /DB_XREF=gi:13044404 /DB_XREF=est:602381262F1 /CLONE=IMAGE:4499078 /UG=Hs.101282 Homo sapiens cDNA: FLJ21238 fis, clone COL01115 BG289001 ceramide synthase 6 CERS6 253782 NM_001256126 /// NM_203463 /// XM_005246440 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // inferred from electronic annotation 41.60 78.00 3.78 0.01 0.02 -4.48
218057_x_at 218057_x_at NM_006067 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006067.1 /DEF=Homo sapiens neighbor of COX4 (NOC4), mRNA. /FEA=mRNA /GEN=NOC4 /PROD=neighbor of COX4 /DB_XREF=gi:5174614 /UG=Hs.173162 neighbor of COX4 /FL=gb:BC001472.1 gb:AF005888.1 gb:NM_006067.1 NM_006067 ER membrane protein complex subunit 8 EMC8 10328 NM_001142288 /// NM_006067 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0072546 // ER membrane protein complex // inferred from direct assay 54.50 196.00 3.78 0.01 0.02 -4.48
213587_s_at 213587_s_at AI884867 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI884867 /FEA=EST /DB_XREF=gi:5590031 /DB_XREF=est:wl85g03.x1 /CLONE=IMAGE:2431732 /UG=Hs.91379 ribosomal protein L26 AI884867 ATPase, H+ transporting V0 subunit e2 ATP6V0E2 155066 NM_001100592 /// NM_001289990 /// NM_145230 /// NR_110612 /// XM_005249958 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0007035 // vacuolar acidification // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016049 // cell growth // inferred from genetic interaction /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0033572 // transferrin transport // traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0010008 // endosome membrane // traceable author statement /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // non-traceable author statement /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042625 // ATPase activity, coupled to transmembrane movement of ions // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay 49.75 105.73 3.78 0.01 0.02 -4.48
202856_s_at 202856_s_at NM_004207 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004207.1 /DEF=Homo sapiens solute carrier family 16 (monocarboxylic acid transporters), member 3 (SLC16A3), mRNA. /FEA=mRNA /GEN=SLC16A3 /PROD=solute carrier family 16 (monocarboxylic acidtransporters), member 3 /DB_XREF=gi:4759111 /UG=Hs.85838 solute carrier family 16 (monocarboxylic acid transporters), member 3 /FL=gb:U81800.1 gb:NM_004207.1 NM_004207 microRNA 6787 /// solute carrier family 16 (monocarboxylate transporter), member 3 MIR6787 /// SLC16A3 9123 /// 102465472 NM_001042422 /// NM_001042423 /// NM_001206950 /// NM_001206951 /// NM_001206952 /// NM_004207 /// NR_106845 0006090 // pyruvate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015718 // monocarboxylic acid transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0008028 // monocarboxylic acid transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -222.60 336.15 -3.78 0.01 0.02 -4.48
212605_s_at 212605_s_at AK025759 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025759.1 /DEF=Homo sapiens cDNA: FLJ22106 fis, clone HEP17675. /FEA=mRNA /DB_XREF=gi:10438374 /UG=Hs.323470 Homo sapiens cDNA: FLJ22106 fis, clone HEP17675 AK025759 nudix (nucleoside diphosphate linked moiety X)-type motif 3 NUDT3 11165 NM_006703 0007267 // cell-cell signaling // traceable author statement /// 0015961 // diadenosine polyphosphate catabolic process // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation 37.05 75.55 3.78 0.01 0.02 -4.48
209626_s_at 209626_s_at AI202969 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI202969 /FEA=EST /DB_XREF=gi:3755575 /DB_XREF=est:qr32d06.x1 /CLONE=IMAGE:1942571 /UG=Hs.197955 KIAA0704 protein /FL=gb:AY008372.1 AI202969 oxysterol binding protein-like 3 OSBPL3 26031 NM_015550 /// NM_145320 /// NM_145321 /// NM_145322 /// NM_145323 /// NM_145324 /// NR_104111 /// NR_104112 /// XM_005249698 /// XM_006715681 /// XM_006715682 /// XM_006715683 /// XM_006715684 /// XR_428073 /// XR_428074 /// XR_428075 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0097038 // perinuclear endoplasmic reticulum // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from direct assay -64.02 109.36 -3.78 0.01 0.02 -4.48
219530_at 219530_at NM_024675 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024675.1 /DEF=Homo sapiens hypothetical protein FLJ21816 (FLJ21816), mRNA. /FEA=mRNA /GEN=FLJ21816 /PROD=hypothetical protein FLJ21816 /DB_XREF=gi:13375939 /UG=Hs.86434 hypothetical protein FLJ21816 /FL=gb:NM_024675.1 NM_024675 partner and localizer of BRCA2 PALB2 79728 NM_024675 0000724 // double-strand break repair via homologous recombination // inferred from direct assay /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0036342 // post-anal tail morphogenesis // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 33.97 54.91 3.78 0.01 0.02 -4.48
217907_at 217907_at NM_014161 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014161.1 /DEF=Homo sapiens HSPC071 protein (HSPC071), mRNA. /FEA=mRNA /GEN=HSPC071 /PROD=HSPC071 protein /DB_XREF=gi:7661777 /UG=Hs.23038 HSPC071 protein /FL=gb:AL136633.1 gb:BC001623.1 gb:AF161556.1 gb:NM_014161.1 NM_014161 mitochondrial ribosomal protein L18 MRPL18 29074 NM_014161 /// XM_006715466 0006412 // translation // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0035928 // rRNA import into mitochondrion // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005761 // mitochondrial ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0008097 // 5S rRNA binding // inferred from direct assay 70.50 266.02 3.78 0.01 0.02 -4.48
212066_s_at 212066_s_at AB018272 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB018272.1 /DEF=Homo sapiens mRNA for KIAA0729 protein, partial cds. /FEA=mRNA /GEN=KIAA0729 /PROD=KIAA0729 protein /DB_XREF=gi:3882178 /UG=Hs.180948 KIAA0729 protein AB018272 ubiquitin specific peptidase 34 USP34 9736 NM_014709 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0032781 // positive regulation of ATPase activity // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from direct assay 0001671 // ATPase activator activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // inferred from mutant phenotype /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation -87.52 325.46 -3.77 0.01 0.02 -4.48
209201_x_at 209201_x_at L01639 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L01639.1 /DEF=Human (clone HSY3RR) neuropeptide Y receptor (NPYR) mRNA, complete cds. /FEA=mRNA /GEN=NPYR /PROD=neuropeptide Y receptor /DB_XREF=gi:189313 /UG=Hs.89414 chemokine (C-X-C motif), receptor 4 (fusin) /FL=gb:L01639.1 gb:AF025375.1 gb:M99293.1 gb:L06797.1 gb:NM_003467.1 gb:AF147204.1 L01639 chemokine (C-X-C motif) receptor 4 CXCR4 7852 NM_001008540 /// NM_003467 0000187 // activation of MAPK activity // traceable author statement /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0002407 // dendritic cell chemotaxis // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007204 // positive regulation of cytosolic calcium ion concentration // traceable author statement /// 0007281 // germ cell development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008045 // motor neuron axon guidance // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from mutant phenotype /// 0030260 // entry into host cell // traceable author statement /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042119 // neutrophil activation // inferred from electronic annotation /// 0043217 // myelin maintenance // inferred from sequence or structural similarity /// 0048699 // generation of neurons // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0050920 // regulation of chemotaxis // inferred from mutant phenotype /// 0061351 // neural precursor cell proliferation // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // non-traceable author statement /// 0071345 // cellular response to cytokine stimulus // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004950 // chemokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015026 // coreceptor activity // traceable author statement /// 0016494 // C-X-C chemokine receptor activity // non-traceable author statement /// 0019955 // cytokine binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032027 // myosin light chain binding // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay -149.73 340.49 -3.77 0.01 0.02 -4.48
212496_s_at 212496_s_at BE256900 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE256900 /FEA=EST /DB_XREF=gi:9127367 /DB_XREF=est:601112063F1 /CLONE=IMAGE:3352887 /UG=Hs.301011 KIAA0876 protein BE256900 lysine (K)-specific demethylase 4B KDM4B 23030 NM_015015 /// XM_005259521 /// XM_005259522 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -48.65 130.53 -3.77 0.01 0.02 -4.48
212863_x_at 212863_x_at BF337195 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF337195 /FEA=EST /DB_XREF=gi:11283540 /DB_XREF=est:602034795F1 /CLONE=IMAGE:4182742 /UG=Hs.239737 C-terminal binding protein 1 BF337195 C-terminal binding protein 1 CTBP1 1487 NM_001012614 /// NM_001328 /// XM_005272261 /// XM_005272262 /// XM_005272263 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0007030 // Golgi organization // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019079 // viral genome replication // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // inferred from mutant phenotype /// 0034401 // regulation of transcription by chromatin organization // inferred from mutant phenotype /// 0035067 // negative regulation of histone acetylation // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0090241 // negative regulation of histone H4 acetylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // traceable author statement /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from sequence or structural similarity /// 0070491 // repressing transcription factor binding // inferred from physical interaction 54.88 369.86 3.77 0.01 0.02 -4.48
210139_s_at 210139_s_at L03203 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L03203.1 /DEF=Human peripheral myelin protein 22 (GAS3) mRNA, complete cds. /FEA=mRNA /GEN=GAS3 /PROD=peripheral myelin protein 22 /DB_XREF=gi:182984 /UG=Hs.103724 peripheral myelin protein 22 /FL=gb:L03203.1 L03203 peripheral myelin protein 22 PMP22 5376 NM_000304 /// NM_001281455 /// NM_001281456 /// NM_153321 /// NM_153322 /// NR_104017 /// NR_104018 0007268 // synaptic transmission // traceable author statement /// 0007422 // peripheral nervous system development // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032288 // myelin assembly // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043218 // compact myelin // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 62.05 290.07 3.77 0.01 0.02 -4.48
219335_at 219335_at NM_022838 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022838.1 /DEF=Homo sapiens hypothetical protein FLJ12969 (FLJ12969), mRNA. /FEA=mRNA /GEN=FLJ12969 /PROD=hypothetical protein FLJ12969 /DB_XREF=gi:12383085 /UG=Hs.119699 hypothetical protein FLJ12969 /FL=gb:NM_022838.1 NM_022838 armadillo repeat containing, X-linked 5 ARMCX5 64860 NM_001168478 /// NM_001168479 /// NM_001168480 /// NM_001168482 /// NM_001168485 /// NM_022838 0005737 // cytoplasm // inferred from direct assay 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 34.00 44.70 3.77 0.01 0.02 -4.48
212306_at 212306_at AI741784 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI741784 /FEA=EST /DB_XREF=gi:5110072 /DB_XREF=est:wg22h09.x1 /CLONE=IMAGE:2365889 /UG=Hs.108614 KIAA0627 protein; Drosophila multiple asters (Mast)-like homolog 2 AI741784 cytoplasmic linker associated protein 2 CLASP2 23122 NM_001207044 /// NM_015097 /// XM_006713036 /// XM_006713037 /// XM_006713038 /// XM_006713039 /// XM_006713040 /// XM_006713041 /// XM_006713042 /// XM_006713043 /// XM_006713044 /// XM_006713045 /// XM_006713046 /// XM_006713047 /// XM_006713048 /// XM_006713049 /// XM_006713050 /// XM_006713051 /// XM_006713052 /// XM_006713053 /// XM_006713054 /// XM_006713055 /// XM_006713056 /// XM_006713057 /// XM_006713058 /// XM_006713059 /// XM_006713060 0000278 // mitotic cell cycle // traceable author statement /// 0007020 // microtubule nucleation // inferred from mutant phenotype /// 0007026 // negative regulation of microtubule depolymerization // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0016477 // cell migration // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from mutant phenotype /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from mutant phenotype /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0034453 // microtubule anchoring // inferred from mutant phenotype /// 0036065 // fucosylation // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005828 // kinetochore microtubule // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // non-traceable author statement /// 0043515 // kinetochore binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from direct assay 31.30 117.25 3.77 0.01 0.02 -4.48
203357_s_at 203357_s_at NM_014296 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014296.1 /DEF=Homo sapiens calpain 7 (CAPN7), mRNA. /FEA=mRNA /GEN=CAPN7 /PROD=calpain 7 /DB_XREF=gi:7656958 /UG=Hs.7145 calpain 7 /FL=gb:AB028639.1 gb:NM_014296.1 NM_014296 calpain 7 CAPN7 23473 NM_014296 /// XM_005265008 /// XM_006713080 /// XR_245107 /// XR_245108 0006508 // proteolysis // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // inferred from direct assay /// 0097264 // self proteolysis // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0090541 // MIT domain binding // inferred from physical interaction 40.50 77.90 3.77 0.01 0.02 -4.48
201574_at 201574_at NM_004730 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004730.1 /DEF=Homo sapiens eukaryotic translation termination factor 1 (ETF1), mRNA. /FEA=mRNA /GEN=ETF1 /PROD=eukaryotic translation termination factor 1 /DB_XREF=gi:4759033 /UG=Hs.77324 eukaryotic translation termination factor 1 /FL=gb:U90176.1 gb:M75715.1 gb:NM_004730.1 NM_004730 eukaryotic translation termination factor 1 ETF1 2107 NM_001256302 /// NM_001282185 /// NM_001291974 /// NM_001291975 /// NM_004730 /// XM_005271920 /// XM_005271921 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006449 // regulation of translational termination // traceable author statement /// 0006479 // protein methylation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // traceable author statement /// 0003747 // translation release factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008079 // translation termination factor activity // traceable author statement /// 0016149 // translation release factor activity, codon specific // inferred from electronic annotation /// 0043022 // ribosome binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 141.57 523.16 3.77 0.01 0.02 -4.48
220637_at 220637_at NM_024785 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024785.1 /DEF=Homo sapiens hypothetical protein FLJ22746 (FLJ22746), mRNA. /FEA=mRNA /GEN=FLJ22746 /PROD=hypothetical protein FLJ22746 /DB_XREF=gi:13376147 /UG=Hs.147585 hypothetical protein FLJ22746 /FL=gb:NM_024785.1 NM_024785 family with sequence similarity 124B FAM124B 79843 NM_001122779 /// NM_024785 0005515 // protein binding // inferred from physical interaction 62.03 154.29 3.77 0.01 0.02 -4.48
218358_at 218358_at NM_024324 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024324.1 /DEF=Homo sapiens hypothetical protein MGC11256 (MGC11256), mRNA. /FEA=mRNA /GEN=MGC11256 /PROD=hypothetical protein MGC11256 /DB_XREF=gi:13236568 /UG=Hs.28029 hypothetical protein MGC11256 /FL=gb:BC002894.1 gb:NM_024324.1 NM_024324 cysteine-rich with EGF-like domains 2 CRELD2 79174 NM_001135101 /// NM_001284317 /// NM_001284318 /// NM_024324 /// NR_104295 /// XM_005261737 /// XM_005261738 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 154.65 351.62 3.77 0.01 0.02 -4.48
221931_s_at 221931_s_at AV701173 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV701173 /FEA=EST /DB_XREF=gi:10717503 /DB_XREF=est:AV701173 /CLONE=ADAAGH04 /UG=Hs.301048 Homo sapiens sec13-like protein mRNA, complete cds AV701173 SEH1-like (S. cerevisiae) SEH1L 81929 NM_001013437 /// NM_031216 /// XM_005258152 /// XM_005258153 /// XM_006722359 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006999 // nuclear pore organization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007080 // mitotic metaphase plate congression // inferred from mutant phenotype /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051315 // attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0031080 // nuclear pore outer ring // inferred from direct assay /// 0031080 // nuclear pore outer ring // non-traceable author statement 0005515 // protein binding // inferred from electronic annotation 55.28 128.89 3.77 0.01 0.02 -4.48
209785_s_at 209785_s_at AF065214 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF065214.1 /DEF=Homo sapiens cytosolic phospholipase A2 gamma (cPLA2 gamma) mRNA, complete cds. /FEA=mRNA /GEN=cPLA2 gamma /PROD=cytosolic phospholipase A2 gamma /DB_XREF=gi:3811344 /UG=Hs.18858 phospholipase A2, group IVC (cytosolic, calcium-independent) /FL=gb:AF058921.1 gb:AF065214.1 gb:NM_003706.1 AF065214 phospholipase A2, group IVC (cytosolic, calcium-independent) PLA2G4C 8605 NM_001159322 /// NM_001159323 /// NM_003706 /// XM_006723451 /// XM_006723452 /// XM_006723453 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006954 // inflammatory response // non-traceable author statement /// 0007567 // parturition // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // non-traceable author statement /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0036149 // phosphatidylinositol acyl-chain remodeling // traceable author statement /// 0036151 // phosphatidylcholine acyl-chain remodeling // traceable author statement /// 0036152 // phosphatidylethanolamine acyl-chain remodeling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement /// 0046475 // glycerophospholipid catabolic process // inferred from direct assay 0005635 // nuclear envelope // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // traceable author statement 0004620 // phospholipase activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005543 // phospholipid binding // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047499 // calcium-independent phospholipase A2 activity // inferred from direct assay -268.20 235.25 -3.77 0.01 0.02 -4.48
208646_at 208646_at AF116710 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF116710.1 /DEF=Homo sapiens PRO2640 mRNA, complete cds. /FEA=mRNA /PROD=PRO2640 /DB_XREF=gi:7959918 /UG=Hs.244621 ribosomal protein S14 /FL=gb:BC001126.1 gb:BC003401.1 gb:NM_005617.1 gb:AF116710.1 AF116710 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0000028 // ribosomal small subunit assembly // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from mutant phenotype /// 0030490 // maturation of SSU-rRNA // inferred from sequence or structural similarity /// 0044267 // cellular protein metabolic process // traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045182 // translation regulator activity // inferred from mutant phenotype /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay -124.15 594.70 -3.76 0.01 0.02 -4.48
201827_at 201827_at AF113019 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF113019.1 /DEF=Homo sapiens PRO2451 mRNA, complete cds. /FEA=mRNA /PROD=PRO2451 /DB_XREF=gi:6642761 /UG=Hs.250581 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 /FL=gb:U66618.1 gb:NM_003077.1 gb:AF113019.1 AF113019 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 SMARCD2 6603 NM_001098426 /// NM_003077 /// XM_005257604 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay 38.60 39.85 3.76 0.01 0.02 -4.48
202855_s_at 202855_s_at AL513917 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL513917 /FEA=EST /DB_XREF=gi:12777411 /DB_XREF=est:AL513917 /CLONE=CL0BA006ZD09 (3 prime) /UG=Hs.85838 solute carrier family 16 (monocarboxylic acid transporters), member 3 /FL=gb:U81800.1 gb:NM_004207.1 AL513917 microRNA 6787 /// solute carrier family 16 (monocarboxylate transporter), member 3 MIR6787 /// SLC16A3 9123 /// 102465472 NM_001042422 /// NM_001042423 /// NM_001206950 /// NM_001206951 /// NM_001206952 /// NM_004207 /// NR_106845 0006090 // pyruvate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015718 // monocarboxylic acid transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0008028 // monocarboxylic acid transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -250.50 361.95 -3.76 0.01 0.02 -4.48
214965_at 214965_at AF070574 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF070574.1 /DEF=Homo sapiens clone 24819 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3387945 /UG=Hs.22316 Homo sapiens clone 24819 mRNA sequence AF070574 spermatogenesis associated 2-like SPATA2L 124044 NM_152339 /// XM_005256279 40.83 50.04 3.76 0.01 0.02 -4.48
205397_x_at 205397_x_at U76622 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U76622.1 /DEF=Human mad homolog JV15-2 mRNA, complete cds. /FEA=mRNA /GEN=JV15-2 /PROD=JV15-2 /DB_XREF=gi:1673576 /UG=Hs.211578 MAD (mothers against decapentaplegic, Drosophila) homolog 3 /FL=gb:U76622.1 gb:U68019.1 gb:NM_005902.1 U76622 SMAD family member 3 SMAD3 4088 NM_001145102 /// NM_001145103 /// NM_001145104 /// NM_005902 /// XM_006720506 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0001947 // heart looping // inferred from electronic annotation /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002520 // immune system development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006810 // transport // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0006955 // immune response // inferred from mutant phenotype /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007183 // SMAD protein complex assembly // inferred from direct assay /// 0007369 // gastrulation // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010694 // positive regulation of alkaline phosphatase activity // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from mutant phenotype /// 0016202 // regulation of striated muscle tissue development // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0019049 // evasion or tolerance of host defenses by virus // inferred from direct assay /// 0023019 // signal transduction involved in regulation of gene expression // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0031053 // primary miRNA processing // traceable author statement /// 0032332 // positive regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032731 // positive regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032909 // regulation of transforming growth factor beta2 production // inferred from mutant phenotype /// 0032916 // positive regulation of transforming growth factor beta3 production // inferred from electronic annotation /// 0032924 // activin receptor signaling pathway // inferred from mutant phenotype /// 0033689 // negative regulation of osteoblast proliferation // inferred from electronic annotation /// 0035413 // positive regulation of catenin import into nucleus // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0038092 // nodal signaling pathway // inferred from mutant phenotype /// 0042060 // wound healing // traceable author statement /// 0042110 // T cell activation // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from mutant phenotype /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045216 // cell-cell junction organization // inferred from mutant phenotype /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045930 // negative regulation of mitotic cell cycle // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048340 // paraxial mesoderm morphogenesis // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0051098 // regulation of binding // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from electronic annotation /// 0060039 // pericardium development // inferred from electronic annotation /// 0060290 // transdifferentiation // inferred from electronic annotation /// 0061045 // negative regulation of wound healing // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 0097191 // extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 0097296 // activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway // inferred from electronic annotation /// 1901313 // positive regulation of gene expression involved in extracellular matrix organization // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005637 // nuclear inner membrane // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043235 // receptor complex // inferred from mutant phenotype /// 0071141 // SMAD protein complex // inferred from direct assay /// 0071144 // SMAD2-SMAD3 protein complex // inferred from direct assay 0000987 // core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000988 // protein binding transcription factor activity // inferred from direct assay /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005160 // transforming growth factor beta receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019902 // phosphatase binding // inferred from physical interaction /// 0030618 // transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity // inferred from direct assay /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from physical interaction /// 0070412 // R-SMAD binding // inferred from physical interaction -55.90 72.08 -3.76 0.01 0.02 -4.48
203941_at 203941_at NM_018250 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018250.1 /DEF=Homo sapiens hypothetical protein FLJ10871 (FLJ10871), mRNA. /FEA=mRNA /GEN=FLJ10871 /PROD=hypothetical protein FLJ10871 /DB_XREF=gi:8922725 /UG=Hs.15562 hypothetical protein FLJ10871 /FL=gb:NM_018250.1 NM_018250 integrator complex subunit 9 INTS9 55756 NM_001145159 /// NM_001172562 /// NM_018250 /// NR_026826 /// XM_005273568 /// XM_006716356 /// XM_006716357 0016180 // snRNA processing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0032039 // integrator complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 39.12 129.51 3.76 0.01 0.02 -4.48
209511_at 209511_at BC003582 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003582.1 /DEF=Homo sapiens, polymerase (RNA) II (DNA directed) polypeptide F, clone MGC:2669, mRNA, complete cds. /FEA=mRNA /PROD=polymerase (RNA) II (DNA directed) polypeptideF /DB_XREF=gi:13097770 /UG=Hs.46405 polymerase (RNA) II (DNA directed) polypeptide F /FL=gb:NM_021974.1 gb:BC003582.1 BC003582 polymerase (RNA) II (DNA directed) polypeptide F POLR2F 5435 NM_021974 /// XM_005261649 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006385 // transcription elongation from RNA polymerase III promoter // traceable author statement /// 0006386 // termination of RNA polymerase III transcription // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005666 // DNA-directed RNA polymerase III complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005736 // DNA-directed RNA polymerase I complex // not recorded /// 0005829 // cytosol // traceable author statement 0001054 // RNA polymerase I activity // not recorded /// 0001055 // RNA polymerase II activity // not recorded /// 0001056 // RNA polymerase III activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 46.88 161.49 3.76 0.01 0.02 -4.48
212766_s_at 212766_s_at AW294587 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW294587 /FEA=EST /DB_XREF=gi:6701223 /DB_XREF=est:UI-H-BI2-ahk-f-08-0-UI.s1 /CLONE=IMAGE:2727302 /UG=Hs.301904 Homo sapiens, Similar to hypothetical protein FLJ12484, clone MGC:3008, mRNA, complete cds AW294587 interferon stimulated exonuclease gene 20kDa-like 2 ISG20L2 81875 NM_030980 /// XM_005245516 /// XM_005245517 /// XM_005245518 /// XM_006711560 /// XM_006711561 0008152 // metabolic process // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 43.35 87.92 3.76 0.01 0.02 -4.48
212974_at 212974_at AI808958 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI808958 /FEA=EST /DB_XREF=gi:5395524 /DB_XREF=est:wf67a09.x1 /CLONE=IMAGE:2360632 /UG=Hs.18166 KIAA0870 protein AI808958 DENN/MADD domain containing 3 DENND3 22898 NM_014957 /// XM_005250838 /// XM_005250839 /// XM_005250840 /// XM_005250841 /// XM_005250842 /// XM_005250843 /// XM_005250844 /// XM_005250845 /// XR_242384 0008333 // endosome to lysosome transport // inferred from sequence or structural similarity /// 0032313 // regulation of Rab GTPase activity // inferred from direct assay /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from direct assay /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0044257 // cellular protein catabolic process // inferred from sequence or structural similarity 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0017112 // Rab guanyl-nucleotide exchange factor activity // inferred from direct assay -34.05 64.92 -3.76 0.01 0.02 -4.48
201912_s_at 201912_s_at NM_002094 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002094.1 /DEF=Homo sapiens G1 to S phase transition 1 (GSPT1), mRNA. /FEA=mRNA /GEN=GSPT1 /PROD=G1 to S phase transition 1 /DB_XREF=gi:4504166 /UG=Hs.2707 G1 to S phase transition 1 /FL=gb:NM_002094.1 NM_002094 G1 to S phase transition 1 GSPT1 2935 NM_001130006 /// NM_001130007 /// NM_002094 /// XM_005255274 /// XM_005255275 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006415 // translational termination // inferred from mutant phenotype /// 0006479 // protein methylation // inferred from direct assay 0005622 // intracellular // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003747 // translation release factor activity // inferred from mutant phenotype /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -71.35 287.45 -3.75 0.01 0.02 -4.48
201635_s_at 201635_s_at AI990766 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI990766 /FEA=EST /DB_XREF=gi:5837647 /DB_XREF=est:ws23e06.x1 /CLONE=IMAGE:2498050 /UG=Hs.82712 fragile X mental retardation, autosomal homolog 1 /FL=gb:NM_005087.1 gb:U25165.1 AI990766 fragile X mental retardation, autosomal homolog 1 FXR1 8087 NM_001013438 /// NM_001013439 /// NM_005087 /// XM_005247813 /// XM_005247814 /// XM_005247815 /// XM_005247816 /// XM_006713775 0006915 // apoptotic process // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005844 // polysome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043034 // costamere // inferred from electronic annotation 0002151 // G-quadruplex RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -170.67 290.31 -3.75 0.01 0.02 -4.48
214882_s_at 214882_s_at BG254869 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG254869 /FEA=EST /DB_XREF=gi:12764685 /DB_XREF=est:602369310F1 /CLONE=IMAGE:4477371 /UG=Hs.73965 splicing factor, arginineserine-rich 2 BG254869 microRNA 636 /// serine/arginine-rich splicing factor 2 MIR636 /// SRSF2 6427 /// 693221 NM_001195427 /// NM_003016 /// NR_030366 /// NR_036608 /// XR_429913 /// XR_429914 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 2001141 // regulation of RNA biosynthetic process // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016605 // PML body // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 261.73 652.01 3.75 0.01 0.02 -4.48
214092_x_at 214092_x_at AI928127 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI928127 /FEA=EST /DB_XREF=gi:5664091 /DB_XREF=est:wp11d09.x1 /CLONE=IMAGE:2464529 /UG=Hs.190452 KIAA0365 gene product AI928127 SURP and G patch domain containing 2 SUGP2 10147 NM_001017392 /// NM_014884 /// XR_430120 /// XR_430121 /// XR_430122 /// XR_430123 /// XR_430124 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 34.70 32.62 3.75 0.01 0.02 -4.48
201469_s_at 201469_s_at AI809967 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI809967 /FEA=EST /DB_XREF=gi:5396533 /DB_XREF=est:wf64c03.x1 /CLONE=IMAGE:2360356 /UG=Hs.81972 SHC (Src homology 2 domain-containing) transforming protein 1 /FL=gb:NM_003029.1 gb:U73377.1 AI809967 SHC (Src homology 2 domain containing) transforming protein 1 SHC1 6464 NM_001130040 /// NM_001130041 /// NM_001202859 /// NM_003029 /// NM_183001 /// XM_005245449 /// XM_005245450 /// XM_005245451 /// XM_005245452 0000165 // MAPK cascade // inferred from direct assay /// 0000187 // activation of MAPK activity // inferred from direct assay /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007176 // regulation of epidermal growth factor-activated receptor activity // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // non-traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0033599 // regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from sequence or structural similarity /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048589 // developmental growth // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0051569 // regulation of histone H3-K4 methylation // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0070435 // Shc-EGFR complex // inferred from sequence or structural similarity 0004713 // protein tyrosine kinase activity // traceable author statement /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor activity // traceable author statement /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005159 // insulin-like growth factor receptor binding // inferred from physical interaction /// 0005168 // neurotrophin TRKA receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from physical interaction 68.20 230.15 3.75 0.01 0.02 -4.48
218838_s_at 218838_s_at NM_022492 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022492.1 /DEF=Homo sapiens hypothetical protein FLJ12788 (FLJ12788), mRNA. /FEA=mRNA /GEN=FLJ12788 /PROD=hypothetical protein FLJ12788 /DB_XREF=gi:11968048 /UG=Hs.20242 hypothetical protein FLJ12788 /FL=gb:NM_022492.1 NM_022492 tetratricopeptide repeat domain 31 TTC31 64427 NM_022492 /// NR_027749 /// XM_005264491 /// XM_005264492 /// XM_005264493 /// XM_005264496 /// XM_005264497 /// XM_006712077 /// XR_244951 /// XR_244952 0005515 // protein binding // inferred from electronic annotation 34.43 27.61 3.74 0.01 0.02 -4.48
200814_at 200814_at NM_006263 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006263.1 /DEF=Homo sapiens proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) (PSME1), mRNA. /FEA=mRNA /GEN=PSME1 /PROD=proteasome (prosome, macropain) activatorsubunit 1 (PA28 alpha) /DB_XREF=gi:5453989 /UG=Hs.75348 proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) /FL=gb:BC000352.1 gb:L07633.1 gb:NM_006263.1 NM_006263 proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) PSME1 5720 NM_001281528 /// NM_001281529 /// NM_006263 /// NM_176783 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010950 // positive regulation of endopeptidase activity // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019884 // antigen processing and presentation of exogenous antigen // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0008537 // proteasome activator complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0061133 // endopeptidase activator activity // inferred from electronic annotation -83.57 412.66 -3.74 0.01 0.02 -4.48
218422_s_at 218422_s_at NM_022118 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022118.1 /DEF=Homo sapiens cutaneous T-cell lymphoma tumor antigen se70-2 (SE70-2), mRNA. /FEA=mRNA /GEN=SE70-2 /PROD=cutaneous T-cell lymphoma tumor antigen se70-2 /DB_XREF=gi:11545836 /UG=Hs.39140 cutaneous T-cell lymphoma tumor antigen se70-2 /FL=gb:AF273052.1 gb:NM_022118.1 gb:BC000791.1 NM_022118 RNA binding motif protein 26 RBM26 64062 NM_001286631 /// NM_001286632 /// NM_018605 /// NM_022118 /// XM_005266491 /// XM_005266492 /// XM_005266493 /// XM_005266494 /// XM_005266496 /// XM_005266497 /// XM_005266498 /// XM_005266499 /// XM_005266501 /// XM_006719855 /// XM_006719856 /// XM_006719857 /// XM_006719858 /// XM_006719859 /// XM_006719860 0006397 // mRNA processing // inferred from electronic annotation /// 0010923 // negative regulation of phosphatase activity // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 40.95 101.17 3.74 0.01 0.02 -4.48
205283_at 205283_at NM_006731 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006731.1 /DEF=Homo sapiens Fukuyama type congenital muscular dystrophy (FCMD), mRNA. /FEA=mRNA /GEN=FCMD /PROD=fukutin /DB_XREF=gi:5803014 /UG=Hs.55777 Fukuyama type congenital muscular dystrophy /FL=gb:AB008226.1 gb:NM_006731.1 NM_006731 fukutin FKTN 2218 NM_001079802 /// NM_001198963 /// NM_006731 /// XM_005251803 /// XM_005251804 /// XM_006717006 /// XM_006717007 /// XM_006717008 /// XM_006717009 /// XM_006717010 /// XM_006717011 /// XM_006717012 /// XM_006717013 /// XM_006717014 0007399 // nervous system development // traceable author statement /// 0007517 // muscle organ development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0046329 // negative regulation of JNK cascade // inferred from mutant phenotype /// 0060049 // regulation of protein glycosylation // non-traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation 36.98 41.01 3.74 0.01 0.02 -4.48
201207_at 201207_at NM_021137 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021137.1 /DEF=Homo sapiens tumor necrosis factor, alpha-induced protein 1 (endothelial) (TNFAIP1), mRNA. /FEA=mRNA /GEN=TNFAIP1 /PROD=tumor necrosis factor, alpha-induced protein 1(endothelial) /DB_XREF=gi:10863936 /UG=Hs.76090 tumor necrosis factor, alpha-induced protein 1 (endothelial) /FL=gb:NM_021137.1 gb:BC001643.1 gb:BC001949.1 gb:BC003694.1 gb:M80783.1 NM_021137 tumor necrosis factor, alpha-induced protein 1 (endothelial) TNFAIP1 7126 NM_021137 0006260 // DNA replication // inferred from sequence or structural similarity /// 0006915 // apoptotic process // traceable author statement /// 0006955 // immune response // inferred from expression pattern /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0016477 // cell migration // inferred from mutant phenotype /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035024 // negative regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0043149 // stress fiber assembly // inferred from mutant phenotype /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017049 // GTP-Rho binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from electronic annotation 77.67 293.99 3.74 0.01 0.02 -4.48
211528_x_at 211528_x_at M90685 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M90685.1 /DEF=Human lymphocyte antigen (HLA-G2.2) mRNA, complete cds. /FEA=mRNA /GEN=HLA-G2.2 /PROD=b2 microglobulin /DB_XREF=gi:184211 /UG=Hs.73885 HLA-G histocompatibility antigen, class I, G /FL=gb:M90685.1 M90685 major histocompatibility complex, class I, G HLA-G 3135 NM_002127 /// XM_006715080 /// XM_006725041 /// XM_006725700 /// XM_006725909 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002666 // positive regulation of T cell tolerance induction // inferred from mutant phenotype /// 0002767 // immune response-inhibiting cell surface receptor signaling pathway // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0006968 // cellular defense response // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0042130 // negative regulation of T cell proliferation // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045591 // positive regulation of regulatory T cell differentiation // inferred from mutant phenotype /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 2001199 // negative regulation of dendritic cell differentiation // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042803 // protein homodimerization activity // non-traceable author statement -163.85 494.73 -3.74 0.01 0.02 -4.48
218506_x_at 218506_x_at NM_018459 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018459.1 /DEF=Homo sapiens uncharacterized bone marrow protein BM045 (BM045), mRNA. /FEA=mRNA /GEN=BM045 /PROD=uncharacterized bone marrow protein BM045 /DB_XREF=gi:8922103 /UG=Hs.8750 uncharacterized bone marrow protein BM045 /FL=gb:AF217521.1 gb:NM_018459.1 NM_018459 glyoxylate reductase 1 homolog (Arabidopsis) GLYR1 84656 NM_032569 /// XM_005255637 /// XM_005255638 /// XM_005255639 /// XM_005255640 /// XR_243321 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 62.28 128.84 3.73 0.01 0.02 -4.48
212174_at 212174_at W02312 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W02312 /FEA=EST /DB_XREF=gi:1274291 /DB_XREF=est:za08d08.r1 /CLONE=IMAGE:291951 /UG=Hs.171811 adenylate kinase 2 W02312 adenylate kinase 2 AK2 204 NM_001199199 /// NM_001625 /// NM_013411 /// NR_037591 /// NR_037592 /// XR_246248 0001889 // liver development // inferred from electronic annotation /// 0006119 // oxidative phosphorylation // inferred from electronic annotation /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006172 // ADP biosynthetic process // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046033 // AMP metabolic process // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0046060 // dATP metabolic process // inferred from electronic annotation /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation /// 0046939 // nucleotide phosphorylation // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0097066 // response to thyroid hormone // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0036126 // sperm flagellum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097226 // sperm mitochondrial sheath // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019205 // nucleobase-containing compound kinase activity // inferred from electronic annotation 65.30 172.10 3.73 0.01 0.02 -4.48
219067_s_at 219067_s_at NM_017615 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017615.1 /DEF=Homo sapiens hypothetical protein FLJ20003 (FLJ20003), mRNA. /FEA=mRNA /GEN=FLJ20003 /PROD=hypothetical protein FLJ20003 /DB_XREF=gi:8923008 /UG=Hs.258798 hypothetical protein FLJ20003 /FL=gb:NM_017615.1 NM_017615 non-SMC element 4 homolog A (S. cerevisiae) NSMCE4A 54780 NM_001167865 /// NM_017615 /// XM_005269928 /// XM_005269929 /// XM_005269930 /// XR_428706 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 2001022 // positive regulation of response to DNA damage stimulus // inferred from mutant phenotype 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0030915 // Smc5-Smc6 complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 42.75 61.27 3.73 0.01 0.02 -4.48
208739_x_at 208739_x_at L76416 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L76416.1 /DEF=Homo sapiens MIF2 suppressor (HSMT3) mRNA, complete cds. /FEA=mRNA /GEN=HSMT3 /PROD=MIF2 suppressor /DB_XREF=gi:5566605 /UG=Hs.180139 SMT3 (suppressor of mif two 3, yeast) homolog 2 /FL=gb:L76416.1 gb:NM_006937.1 L76416 small ubiquitin-related modifier 2-like /// small ubiquitin-like modifier 2 /// small ubiquitin-like modifier 3 LOC101929087 /// SUMO2 /// SUMO3 6612 /// 6613 /// 101929087 NM_001005849 /// NM_001286416 /// NM_006936 /// NM_006937 /// XM_005250081 /// XM_005276013 /// XM_005276311 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // traceable author statement /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000776 // kinetochore // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 173.15 770.00 3.73 0.01 0.02 -4.48
204297_at 204297_at NM_002647 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002647.1 /DEF=Homo sapiens phosphoinositide-3-kinase, class 3 (PIK3C3), mRNA. /FEA=mRNA /GEN=PIK3C3 /PROD=phosphoinositide-3-kinase, class 3 /DB_XREF=gi:4505800 /UG=Hs.32971 phosphoinositide-3-kinase, class 3 /FL=gb:NM_002647.1 NM_002647 phosphatidylinositol 3-kinase, catalytic subunit type 3 PIK3C3 5289 NM_002647 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000910 // cytokinesis // inferred from mutant phenotype /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006914 // autophagy // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016485 // protein processing // inferred from electronic annotation /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0036092 // phosphatidylinositol-3-phosphate biosynthetic process // inferred from electronic annotation /// 0036092 // phosphatidylinositol-3-phosphate biosynthetic process // inferred from mutant phenotype /// 0036092 // phosphatidylinositol-3-phosphate biosynthetic process // traceable author statement /// 0043201 // response to leucine // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045022 // early endosome to late endosome transport // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0048015 // phosphatidylinositol-mediated signaling // inferred from electronic annotation /// 0050708 // regulation of protein secretion // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005930 // axoneme // inferred from sequence or structural similarity /// 0005942 // phosphatidylinositol 3-kinase complex // not recorded /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035004 // phosphatidylinositol 3-kinase activity // inferred from electronic annotation -59.10 127.55 -3.73 0.01 0.02 -4.48
201239_s_at 201239_s_at BF530535 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF530535 /FEA=EST /DB_XREF=gi:11617898 /DB_XREF=est:602071788F1 /CLONE=IMAGE:4214660 /UG=Hs.77665 KIAA0102 gene product /FL=gb:D14658.1 gb:NM_014752.1 BF530535 signal peptidase complex subunit 2 homolog (S. cerevisiae) SPCS2 9789 NM_014752 0006412 // translation // traceable author statement /// 0006465 // signal peptide processing // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005787 // signal peptidase complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -69.22 358.24 -3.73 0.01 0.02 -4.48
201227_s_at 201227_s_at NM_005004 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005004.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 (19kD, ASHI) (NDUFB8), mRNA. /FEA=mRNA /GEN=NDUFB8 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 8 (19kD, ASHI) /DB_XREF=gi:4826853 /UG=Hs.198273 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 (19kD, ASHI) /FL=gb:BC000466.1 gb:AF044958.1 gb:AF077028.1 gb:NM_005004.1 gb:AL080056.1 NM_005004 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa NDUFB8 4714 NM_001284367 /// NM_001284368 /// NM_005004 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 83.95 586.40 3.73 0.01 0.02 -4.48
200948_at 200948_at NM_005439 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005439.1 /DEF=Homo sapiens myeloid leukemia factor 2 (MLF2), mRNA. /FEA=mRNA /GEN=MLF2 /PROD=myeloid leukemia factor 2 /DB_XREF=gi:4885486 /UG=Hs.79026 myeloid leukemia factor 2 /FL=gb:BC000898.1 gb:BC002340.1 gb:U57342.1 gb:AF070539.1 gb:NM_005439.1 NM_005439 myeloid leukemia factor 2 MLF2 8079 NM_005439 /// NR_026581 0006952 // defense response // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 68.40 247.78 3.73 0.01 0.02 -4.48
200672_x_at 200672_x_at NM_003128 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003128.1 /DEF=Homo sapiens spectrin, beta, non-erythrocytic 1 (SPTBN1), mRNA. /FEA=mRNA /GEN=SPTBN1 /PROD=spectrin, beta, non-erythrocytic 1 /DB_XREF=gi:4507194 /UG=Hs.107164 spectrin, beta, non-erythrocytic 1 /FL=gb:M96803.1 gb:NM_003128.1 NM_003128 spectrin, beta, non-erythrocytic 1 SPTBN1 6711 NM_003128 /// NM_178313 /// XM_005264517 /// XM_005264518 /// XM_006712087 0000281 // mitotic cytokinesis // inferred from mutant phenotype /// 0007009 // plasma membrane organization // inferred from mutant phenotype /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein import into nucleus // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0043001 // Golgi to plasma membrane protein transport // inferred from mutant phenotype /// 0051693 // actin filament capping // inferred from electronic annotation /// 0071709 // membrane assembly // inferred from mutant phenotype /// 0072661 // protein targeting to plasma membrane // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0014731 // spectrin-associated cytoskeleton // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030673 // axolemma // inferred from sequence or structural similarity /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0030506 // ankyrin binding // inferred from physical interaction /// 0030506 // ankyrin binding // non-traceable author statement /// 0032403 // protein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -107.38 263.21 -3.73 0.01 0.02 -4.48
210840_s_at 210840_s_at D29640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D29640.1 /DEF=Human mRNA for KIAA0051 gene, complete cds. /FEA=mRNA /GEN=KIAA0051 /DB_XREF=gi:473930 /UG=Hs.1742 IQ motif containing GTPase activating protein 1 /FL=gb:D29640.1 D29640 IQ motif containing GTPase activating protein 1 IQGAP1 8826 NM_003870 /// XM_005254984 0001817 // regulation of cytokine production // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032320 // positive regulation of Ras GTPase activity // inferred from electronic annotation /// 0035305 // negative regulation of dephosphorylation // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from direct assay /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from mutant phenotype /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 0072015 // glomerular visceral epithelial cell development // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005884 // actin filament // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031252 // cell leading edge // inferred from electronic annotation /// 0036057 // slit diaphragm // inferred from sequence or structural similarity /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005095 // GTPase inhibitor activity // traceable author statement /// 0005096 // GTPase activator activity // traceable author statement /// 0005099 // Ras GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from physical interaction /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043539 // protein serine/threonine kinase activator activity // inferred from direct assay /// 0048365 // Rac GTPase binding // inferred from electronic annotation -81.65 428.75 -3.73 0.01 0.02 -4.48
210418_s_at 210418_s_at AF023265 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF023265.1 /DEF=Homo sapiens NAD+-specific isocitrate dehydrogenase beta subunit isoform A mRNA, nuclear gene encoding mitochondrial product, complete cds. /FEA=mRNA /PROD=NAD+-specific isocitrate dehydrogenase betasubunit isoform A /DB_XREF=gi:4103445 /UG=Hs.155410 isocitrate dehydrogenase 3 (NAD+) beta /FL=gb:AF023265.1 AF023265 isocitrate dehydrogenase 3 (NAD+) beta IDH3B 3420 NM_001258384 /// NM_006899 /// NM_174855 /// NM_174856 /// XM_005260716 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006102 // isocitrate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006734 // NADH metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 78.35 213.22 3.72 0.01 0.02 -4.48
208623_s_at 208623_s_at J05021 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J05021.1 /DEF=Human cytovillin 2 (VIL2) mRNA, complete cds. /FEA=mRNA /GEN=VIL2 /DB_XREF=gi:340216 /UG=Hs.155191 villin 2 (ezrin) /FL=gb:J05021.1 gb:AL162086.1 gb:NM_003379.2 J05021 ezrin EZR 7430 NM_001111077 /// NM_003379 /// XM_006715561 0007016 // cytoskeletal anchoring at plasma membrane // non-traceable author statement /// 0007159 // leukocyte cell-cell adhesion // inferred from expression pattern /// 0007411 // axon guidance // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from genetic interaction /// 0022614 // membrane to membrane docking // inferred from expression pattern /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0031623 // receptor internalization // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // inferred from direct assay /// 0061028 // establishment of endothelial barrier // inferred from genetic interaction 0001726 // ruffle // inferred from direct assay /// 0001931 // uropod // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from direct assay /// 0030175 // filopodium // inferred from direct assay /// 0030315 // T-tubule // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // traceable author statement /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0044393 // microspike // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0051286 // cell tip // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097449 // astrocyte projection // inferred from electronic annotation /// 0097454 // Schwann cell microvillus // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050839 // cell adhesion molecule binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from direct assay 52.40 124.55 3.72 0.01 0.02 -4.48
203254_s_at 203254_s_at NM_006289 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006289.1 /DEF=Homo sapiens talin (TLN), mRNA. /FEA=mRNA /GEN=TLN /PROD=talin /DB_XREF=gi:5454129 /UG=Hs.278559 talin /FL=gb:AF078828.1 gb:NM_006289.1 gb:AF177198.1 NM_006289 talin 1 TLN1 7094 NM_006289 /// XM_005251564 /// XM_006716852 0002576 // platelet degranulation // traceable author statement /// 0006928 // cellular component movement // non-traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007016 // cytoskeletal anchoring at plasma membrane // non-traceable author statement /// 0007043 // cell-cell junction assembly // traceable author statement /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0001726 // ruffle // inferred from sequence or structural similarity /// 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // inferred by curator /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0005925 // focal adhesion // non-traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017166 // vinculin binding // inferred from physical interaction /// 0030274 // LIM domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation 51.70 148.70 3.71 0.01 0.02 -4.48
203871_at 203871_at NM_015670 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015670.1 /DEF=Homo sapiens sentrinSUMO-specific protease 3 (SENP3), mRNA. /FEA=mRNA /GEN=SENP3 /PROD=sentrinSUMO-specific protease 3 /DB_XREF=gi:7661681 /UG=Hs.118926 sentrinSUMO-specific protease 3 /FL=gb:AY008763.1 gb:AL050283.1 gb:NM_015670.1 NM_015670 SUMO1/sentrin/SMT3 specific peptidase 3 SENP3 26168 NM_015670 0006508 // proteolysis // inferred from electronic annotation /// 0019538 // protein metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0071339 // MLL1 complex // inferred from direct assay 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 44.33 79.01 3.71 0.01 0.02 -4.48
201970_s_at 201970_s_at NM_002482 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002482.1 /DEF=Homo sapiens nuclear autoantigenic sperm protein (histone-binding) (NASP), mRNA. /FEA=mRNA /GEN=NASP /PROD=nuclear autoantigenic sperm protein(histone-binding) /DB_XREF=gi:4505332 /UG=Hs.243886 nuclear autoantigenic sperm protein (histone-binding) /FL=gb:M97856.1 gb:NM_002482.1 NM_002482 nuclear autoantigenic sperm protein (histone-binding) NASP 4678 NM_001195193 /// NM_002482 /// NM_152298 /// NM_172164 /// XM_005270888 /// XM_005270889 0001824 // blastocyst development // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from sequence or structural similarity /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0043486 // histone exchange // inferred from sequence or structural similarity 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from sequence or structural similarity 60.37 138.66 3.71 0.01 0.02 -4.48
213446_s_at 213446_s_at AI679073 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI679073 /FEA=EST /DB_XREF=gi:4889255 /DB_XREF=est:tu71g05.x1 /CLONE=IMAGE:2256536 /UG=Hs.1742 IQ motif containing GTPase activating protein 1 AI679073 IQ motif containing GTPase activating protein 1 IQGAP1 8826 NM_003870 /// XM_005254984 0001817 // regulation of cytokine production // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032320 // positive regulation of Ras GTPase activity // inferred from electronic annotation /// 0035305 // negative regulation of dephosphorylation // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from direct assay /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from mutant phenotype /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 0072015 // glomerular visceral epithelial cell development // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005884 // actin filament // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031252 // cell leading edge // inferred from electronic annotation /// 0036057 // slit diaphragm // inferred from sequence or structural similarity /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005095 // GTPase inhibitor activity // traceable author statement /// 0005096 // GTPase activator activity // traceable author statement /// 0005099 // Ras GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from physical interaction /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043539 // protein serine/threonine kinase activator activity // inferred from direct assay /// 0048365 // Rac GTPase binding // inferred from electronic annotation -107.72 251.26 -3.71 0.01 0.02 -4.48
203043_at 203043_at NM_004729 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004729.1 /DEF=Homo sapiens Ac-like transposable element (ALTE), mRNA. /FEA=mRNA /GEN=ALTE /PROD=Ac-like transposable element /DB_XREF=gi:4759257 /UG=Hs.9933 Ac-like transposable element /FL=gb:AB018328.1 gb:NM_004729.1 NM_004729 zinc finger, BED-type containing 1 ZBED1 9189 NM_001171135 /// NM_001171136 /// NM_004729 0008152 // metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0000228 // nuclear chromosome // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004803 // transposase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 46.25 147.85 3.71 0.01 0.02 -4.48
200677_at 200677_at NM_004339 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004339.2 /DEF=Homo sapiens pituitary tumor-transforming 1 interacting protein (PTTG1IP), mRNA. /FEA=mRNA /GEN=PTTG1IP /PROD=pituitary tumor-transforming protein1-interacting protein precursor /DB_XREF=gi:11038670 /UG=Hs.111126 pituitary tumor-transforming 1 interacting protein /FL=gb:NM_004339.2 gb:BC000415.1 gb:AF149785.1 NM_004339 pituitary tumor-transforming 1 interacting protein PTTG1IP 754 NM_001286822 /// NM_004339 /// NR_104597 0006606 // protein import into nucleus // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation -259.67 1416.26 -3.71 0.01 0.02 -4.48
220974_x_at 220974_x_at NM_030971 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030971.1 /DEF=Homo sapiens similar to rat tricarboxylate carrier-like protein (BA108L7.2), mRNA. /FEA=mRNA /GEN=BA108L7.2 /PROD=similar to rat tricarboxylate carrier-likeprotein /DB_XREF=gi:13569945 /FL=gb:NM_030971.1 NM_030971 sideroflexin 3 SFXN3 81855 NM_030971 /// XR_428720 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 59.02 118.74 3.71 0.01 0.02 -4.48
202217_at 202217_at NM_004649 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004649.1 /DEF=Homo sapiens ES1 (zebrafish) protein, human homolog of (C21ORF33), mRNA. /FEA=mRNA /GEN=C21ORF33 /PROD=ES1 (zebrafish) protein, human homolog of /DB_XREF=gi:5031690 /UG=Hs.182423 ES1 (zebrafish) protein, human homolog of /FL=gb:BC002370.1 gb:BC003587.1 gb:D86061.1 gb:U53003.1 gb:NM_004649.1 NM_004649 chromosome 21 open reading frame 33 C21orf33 8209 NM_004649 /// NM_198155 /// XM_005261184 /// XM_005261185 /// XM_005261186 /// XM_006724055 /// XM_006724056 0005739 // mitochondrion // not recorded 41.58 145.21 3.71 0.01 0.02 -4.48
209191_at 209191_at BC002654 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002654.1 /DEF=Homo sapiens, Similar to tubulin, beta, 4, clone MGC:4083, mRNA, complete cds. /FEA=mRNA /PROD=Similar to tubulin, beta, 4 /DB_XREF=gi:12803638 /UG=Hs.274398 Homo sapiens, Similar to tubulin, beta, 4, clone MGC:4083, mRNA, complete cds /FL=gb:BC002654.1 BC002654 tubulin, beta 6 class V TUBB6 84617 NM_032525 /// XM_005258159 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 467.92 1354.86 3.70 0.01 0.02 -4.48
202959_at 202959_at AI433712 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI433712 /FEA=EST /DB_XREF=gi:4291098 /DB_XREF=est:ti88f08.x1 /CLONE=IMAGE:2139111 /UG=Hs.155212 methylmalonyl Coenzyme A mutase /FL=gb:M65131.1 gb:NM_000255.1 AI433712 methylmalonyl CoA mutase MUT 4594 NM_000255 /// XM_005249143 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009235 // cobalamin metabolic process // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0019626 // short-chain fatty acid catabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050667 // homocysteine metabolic process // inferred from direct assay 0005739 // mitochondrion // traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004494 // methylmalonyl-CoA mutase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from electronic annotation /// 0031419 // cobalamin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0072341 // modified amino acid binding // inferred from direct assay 31.75 56.33 3.70 0.01 0.02 -4.48
218478_s_at 218478_s_at NM_017612 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017612.1 /DEF=Homo sapiens hypothetical protein DKFZp434E2220 (DKFZp434E2220), mRNA. /FEA=mRNA /GEN=DKFZp434E2220 /PROD=hypothetical protein DKFZp434E2220 /DB_XREF=gi:8922133 /UG=Hs.37706 hypothetical protein DKFZp434E2220 /FL=gb:NM_017612.1 NM_017612 zinc finger, CCHC domain containing 8 ZCCHC8 55596 NM_017612 /// XM_005253581 /// XM_006719491 /// XM_006719492 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -98.50 175.30 -3.70 0.01 0.02 -4.48
209743_s_at 209743_s_at AI989677 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI989677 /FEA=EST /DB_XREF=gi:5836558 /DB_XREF=est:ws35b04.x1 /CLONE=IMAGE:2499151 /UG=Hs.98074 atrophin-1 interacting protein 4 /FL=gb:AB056663.2 AI989677 itchy E3 ubiquitin protein ligase ITCH 83737 NM_001257137 /// NM_001257138 /// NM_031483 /// XM_005260570 /// XM_006723881 /// XM_006723882 /// XR_244153 /// XR_430315 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0001558 // regulation of cell growth // non-traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002669 // positive regulation of T cell anergy // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0035519 // protein K29-linked ubiquitination // inferred from direct assay /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from sequence or structural similarity /// 0046642 // negative regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046718 // viral entry into host cell // traceable author statement /// 0050687 // negative regulation of defense response to virus // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from electronic annotation /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0090085 // regulation of protein deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0043021 // ribonucleoprotein complex binding // inferred from physical interaction /// 0045236 // CXCR chemokine receptor binding // inferred from physical interaction -38.73 84.89 -3.70 0.01 0.02 -4.48
201441_at 201441_at NM_001863 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001863.2 /DEF=Homo sapiens cytochrome c oxidase subunit VIb (COX6B), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=COX6B /PROD=cytochrome c oxidase subunit VIb /DB_XREF=gi:6680989 /UG=Hs.174031 cytochrome c oxidase subunit VIb /FL=gb:BC001015.1 gb:BC002478.1 gb:NM_001863.2 NM_001863 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) COX6B1 1340 NM_001863 0021762 // substantia nigra development // inferred from expression pattern /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // non-traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // non-traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // non-traceable author statement 56.88 404.99 3.70 0.01 0.02 -4.48
206102_at 206102_at NM_021067 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021067.1 /DEF=Homo sapiens KIAA0186 gene product (KIAA0186), mRNA. /FEA=mRNA /GEN=KIAA0186 /PROD=KIAA0186 gene product /DB_XREF=gi:10800147 /UG=Hs.36232 KIAA0186 gene product /FL=gb:NM_021067.1 gb:D80008.1 NM_021067 GINS complex subunit 1 (Psf1 homolog) GINS1 9837 NM_021067 /// XM_005260896 /// XM_006723670 /// XR_244226 /// XR_244227 0000278 // mitotic cell cycle // traceable author statement /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 47.43 70.39 3.70 0.01 0.02 -4.48
200721_s_at 200721_s_at NM_005736 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005736.2 /DEF=Homo sapiens ARP1 (actin-related protein 1, yeast) homolog A (centractin alpha) (ACTR1A), mRNA. /FEA=mRNA /GEN=ACTR1A /PROD=actin-related protein 1A /DB_XREF=gi:13325058 /UG=Hs.153961 ARP1 (actin-related protein 1, yeast) homolog A (centractin alpha) /FL=gb:BC000693.1 gb:NM_005736.2 NM_005736 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ACTR1A 10121 NM_005736 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0016192 // vesicle-mediated transport // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005869 // dynactin complex // traceable author statement /// 0005875 // microtubule associated complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 98.88 224.24 3.70 0.01 0.02 -4.48
221311_x_at 221311_x_at NM_020466 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020466.1 /DEF=Homo sapiens hypothetical protein dJ122O8.2 (DJ122O8.2), mRNA. /FEA=CDS /GEN=DJ122O8.2 /PROD=hypothetical protein dJ122O8.2 /DB_XREF=gi:10092688 /UG=Hs.132094 hypothetical protein dJ122O8.2 /FL=gb:NM_020466.1 NM_020466 LYR motif containing 2 LYRM2 57226 NM_020466 /// NR_028493 /// NR_028494 /// NR_028495 0005739 // mitochondrion // inferred from electronic annotation 38.43 52.04 3.70 0.01 0.02 -4.48
219973_at 219973_at NM_024590 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024590.1 /DEF=Homo sapiens hypothetical protein FLJ23548 (FLJ23548), mRNA. /FEA=mRNA /GEN=FLJ23548 /PROD=hypothetical protein FLJ23548 /DB_XREF=gi:13375780 /UG=Hs.22895 hypothetical protein FLJ23548 /FL=gb:NM_024590.1 NM_024590 arylsulfatase family, member J ARSJ 79642 NM_024590 /// XM_005263211 /// XM_005263212 /// XM_005263213 0006665 // sphingolipid metabolic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // traceable author statement /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 104.22 156.44 3.70 0.01 0.02 -4.48
202599_s_at 202599_s_at NM_003489 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003489.1 /DEF=Homo sapiens nuclear receptor interacting protein 1 (NRIP1), mRNA. /FEA=mRNA /GEN=NRIP1 /PROD=receptor interacting protein 140 /DB_XREF=gi:4505454 /UG=Hs.155017 nuclear receptor interacting protein 1 /FL=gb:NM_003489.1 NM_003489 nuclear receptor interacting protein 1 NRIP1 8204 NM_003489 /// XM_005261063 /// XM_005261065 /// XM_005261066 /// XM_006724054 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001543 // ovarian follicle rupture // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0019915 // lipid storage // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0030728 // ovulation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0035257 // nuclear hormone receptor binding // inferred from physical interaction /// 0035259 // glucocorticoid receptor binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // non-traceable author statement -144.50 219.50 -3.70 0.01 0.02 -4.48
204125_at 204125_at NM_016013 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016013.1 /DEF=Homo sapiens CGI-65 protein (LOC51103), mRNA. /FEA=mRNA /GEN=LOC51103 /PROD=CGI-65 protein /DB_XREF=gi:7705778 /UG=Hs.106529 CGI-65 protein /FL=gb:BC000780.1 gb:AF151823.1 gb:NM_016013.1 NM_016013 NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 NDUFAF1 51103 NM_016013 /// NR_045620 /// XM_006720555 /// XM_006720556 /// XM_006720557 /// XM_006720558 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006461 // protein complex assembly // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // non-traceable author statement 37.75 107.67 3.69 0.01 0.02 -4.48
213465_s_at 213465_s_at BF718769 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF718769 /FEA=EST /DB_XREF=gi:12019514 /DB_XREF=est:KEST72 /CLONE=S90413.NIH-107-R.ab1 /UG=Hs.36587 protein phosphatase 1, regulatory subunit 7 BF718769 protein phosphatase 1, regulatory subunit 7 PPP1R7 5510 NM_001282409 /// NM_001282410 /// NM_001282411 /// NM_001282412 /// NM_001282413 /// NM_001282414 /// NM_002712 0035307 // positive regulation of protein dephosphorylation // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // non-traceable author statement /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008599 // protein phosphatase type 1 regulator activity // traceable author statement /// 0030234 // enzyme regulator activity // non-traceable author statement 47.33 160.06 3.69 0.01 0.02 -4.48
215088_s_at 215088_s_at BG110532 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG110532 /FEA=EST /DB_XREF=gi:12604038 /DB_XREF=est:602278961F1 /CLONE=IMAGE:4366575 /UG=Hs.3577 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kD BG110532 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa SDHC 6391 NM_001035511 /// NM_001035512 /// NM_001035513 /// NM_001278172 /// NM_003001 /// NR_103459 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0009060 // aerobic respiration // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // traceable author statement 0005739 // mitochondrion // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0045273 // respiratory chain complex II // traceable author statement /// 0045281 // succinate dehydrogenase complex // inferred from electronic annotation 0000104 // succinate dehydrogenase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 46.77 184.86 3.69 0.01 0.02 -4.48
212898_at 212898_at AB007866 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB007866.2 /DEF=Homo sapiens mRNA for KIAA0406 protein, partial cds. /FEA=mRNA /GEN=KIAA0406 /PROD=KIAA0406 protein /DB_XREF=gi:6634030 /UG=Hs.158249 KIAA0406 gene product AB007866 TELO2 interacting protein 1 TTI1 9675 NM_014657 /// XM_005260621 /// XR_244159 /// XR_244160 0032006 // regulation of TOR signaling // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0031931 // TORC1 complex // inferred from direct assay /// 0031932 // TORC2 complex // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 45.60 93.92 3.69 0.01 0.02 -4.48
208178_x_at 208178_x_at NM_007118 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007118.1 /DEF=Homo sapiens triple functional domain (PTPRF interacting) (TRIO), mRNA. /FEA=mRNA /GEN=TRIO /PROD=triple functional domain (PTPRF interacting) /DB_XREF=gi:6005921 /UG=Hs.171957 triple functional domain (PTPRF interacting) /FL=gb:U42390.1 gb:NM_007118.1 NM_007118 trio Rho guanine nucleotide exchange factor TRIO 7204 NM_007118 /// XM_006714495 /// XR_241714 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043087 // regulation of GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation -409.53 431.84 -3.69 0.01 0.02 -4.48
212005_at 212005_at AL582808 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL582808 /FEA=EST /DB_XREF=gi:12951159 /DB_XREF=est:AL582808 /CLONE=CS0DL008YF05 (3 prime) /UG=Hs.226770 DKFZP566C0424 protein AL582808 SUZ RNA binding domain containing 1 SZRD1 26099 NM_001114600 /// NM_001271869 /// NR_073500 /// NR_073501 /// NR_073502 /// NR_073503 53.32 106.59 3.69 0.01 0.02 -4.48
218314_s_at 218314_s_at NM_018195 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018195.1 /DEF=Homo sapiens hypothetical protein FLJ10726 (FLJ10726), mRNA. /FEA=mRNA /GEN=FLJ10726 /PROD=hypothetical protein FLJ10726 /DB_XREF=gi:8922622 /UG=Hs.268561 hypothetical protein FLJ10726 /FL=gb:NM_018195.1 NM_018195 chromosome 11 open reading frame 57 C11orf57 55216 NM_001082969 /// NM_001082970 /// NM_018195 /// NR_103469 /// XM_006718873 /// XM_006718874 /// XM_006718875 /// XM_006718876 /// XM_006718877 34.08 72.21 3.69 0.01 0.02 -4.48
206414_s_at 206414_s_at NM_003887 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003887.1 /DEF=Homo sapiens development and differentiation enhancing factor 2 (DDEF2), mRNA. /FEA=mRNA /GEN=DDEF2 /PROD=ADP-ribosylation factorarf-directed GTPaseactivating protein /DB_XREF=gi:4502248 /UG=Hs.12802 development and differentiation enhancing factor 2 /FL=gb:AB007860.1 gb:NM_003887.1 NM_003887 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 ASAP2 8853 NM_001135191 /// NM_003887 /// XM_006711898 /// XM_006711899 /// XM_006711900 /// XM_006711901 /// XM_006711902 0001525 // angiogenesis // inferred from electronic annotation /// 0002043 // blood vessel endothelial cell proliferation involved in sprouting angiogenesis // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006933 // negative regulation of cell adhesion involved in substrate-bound cell migration // inferred from electronic annotation /// 0006933 // negative regulation of cell adhesion involved in substrate-bound cell migration // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010764 // negative regulation of fibroblast migration // inferred from electronic annotation /// 0010764 // negative regulation of fibroblast migration // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from direct assay /// 0016477 // cell migration // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032148 // activation of protein kinase B activity // inferred from direct assay /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0033622 // integrin activation // inferred from electronic annotation /// 0033622 // integrin activation // inferred from sequence or structural similarity /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from electronic annotation /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from sequence or structural similarity /// 0035148 // tube formation // inferred from direct assay /// 0035556 // intracellular signal transduction // traceable author statement /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0043088 // regulation of Cdc42 GTPase activity // inferred from direct assay /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from direct assay /// 0045747 // positive regulation of Notch signaling pathway // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050880 // regulation of blood vessel size // inferred from direct assay /// 0051451 // myoblast migration // inferred from electronic annotation /// 0051451 // myoblast migration // inferred from sequence or structural similarity /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0090051 // negative regulation of cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0090314 // positive regulation of protein targeting to membrane // inferred from electronic annotation /// 0090314 // positive regulation of protein targeting to membrane // inferred from sequence or structural similarity /// 0090315 // negative regulation of protein targeting to membrane // inferred from direct assay /// 1900025 // negative regulation of substrate adhesion-dependent cell spreading // inferred from direct assay /// 2001044 // regulation of integrin-mediated signaling pathway // inferred from electronic annotation /// 2001044 // regulation of integrin-mediated signaling pathway // inferred from sequence or structural similarity 0001726 // ruffle // inferred from direct assay /// 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0030027 // lamellipodium // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from direct assay 0005092 // GDP-dissociation inhibitor activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // traceable author statement /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from direct assay /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 47.98 240.99 3.69 0.01 0.02 -4.48
218915_at 218915_at NM_016418 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016418.1 /DEF=Homo sapiens clone FLB5214 (LOC51219), mRNA. /FEA=mRNA /GEN=LOC51219 /PROD=clone FLB5214 /DB_XREF=gi:9994194 /UG=Hs.5486 clone FLB5214 /FL=gb:AF113694.1 gb:NM_016418.1 NM_016418 neurofibromin 2 (merlin) NF2 4771 NM_000268 /// NM_016418 /// NM_181825 /// NM_181826 /// NM_181827 /// NM_181828 /// NM_181829 /// NM_181830 /// NM_181831 /// NM_181832 /// NM_181833 /// NM_181834 /// NM_181835 0001707 // mesoderm formation // inferred from electronic annotation /// 0001953 // negative regulation of cell-matrix adhesion // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007398 // ectoderm development // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014010 // Schwann cell proliferation // inferred from mutant phenotype /// 0022408 // negative regulation of cell-cell adhesion // inferred from direct assay /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // traceable author statement /// 0035330 // regulation of hippo signaling // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // inferred from direct assay /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from direct assay /// 0043409 // negative regulation of MAPK cascade // inferred from electronic annotation /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // inferred from direct assay /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0031527 // filopodium membrane // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 134.42 183.81 3.68 0.01 0.02 -4.48
202763_at 202763_at NM_004346 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004346.1 /DEF=Homo sapiens caspase 3, apoptosis-related cysteine protease (CASP3), mRNA. /FEA=mRNA /GEN=CASP3 /PROD=caspase 3, apoptosis-related cysteine protease /DB_XREF=gi:4757911 /UG=Hs.74552 caspase 3, apoptosis-related cysteine protease /FL=gb:NM_004346.1 gb:U13737.1 gb:U13738.1 gb:U26943.1 NM_004346 caspase 3, apoptosis-related cysteine peptidase CASP3 836 NM_004346 /// NM_032991 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006508 // proteolysis // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation /// 0008635 // activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c // traceable author statement /// 0009411 // response to UV // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0016485 // protein processing // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030182 // neuron differentiation // not recorded /// 0030198 // extracellular matrix organization // traceable author statement /// 0030216 // keratinocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from direct assay /// 0030218 // erythrocyte differentiation // traceable author statement /// 0030220 // platelet formation // traceable author statement /// 0030264 // nuclear fragmentation involved in apoptotic nuclear change // inferred from mutant phenotype /// 0030889 // negative regulation of B cell proliferation // inferred from electronic annotation /// 0034349 // glial cell apoptotic process // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // traceable author statement /// 0035329 // hippo signaling // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from genetic interaction /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0046007 // negative regulation of activated T cell proliferation // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 0097194 // execution phase of apoptosis // inferred from direct assay /// 0097194 // execution phase of apoptosis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement 0004190 // aspartic-type endopeptidase activity // not recorded /// 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004861 // cyclin-dependent protein serine/threonine kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0097153 // cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0097200 // cysteine-type endopeptidase activity involved in execution phase of apoptosis // inferred from mutant phenotype -51.00 190.03 -3.68 0.01 0.02 -4.48
201394_s_at 201394_s_at U23946 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U23946.1 /DEF=Human putative tumor suppressor (LUCA15) mRNA, complete cds. /FEA=mRNA /GEN=LUCA15 /DB_XREF=gi:1244403 /UG=Hs.201675 RNA binding motif protein 5 /FL=gb:U23946.1 gb:BC002957.1 gb:AF091263.1 gb:NM_005778.1 U23946 RNA binding motif protein 5 RBM5 10181 NM_005778 /// NR_036627 /// XM_006712917 /// XM_006712918 /// XM_006712919 /// XM_006712920 /// XR_427245 0000245 // spliceosomal complex assembly // inferred from direct assay /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -49.43 182.51 -3.68 0.01 0.02 -4.48
201381_x_at 201381_x_at AF057356 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF057356.1 /DEF=Homo sapiens calcyclin binding protein mRNA, complete cds. /FEA=mRNA /PROD=calcyclin binding protein /DB_XREF=gi:3063652 /UG=Hs.27258 calcyclin binding protein /FL=gb:AF314752.1 gb:AF057356.1 gb:NM_014412.1 AF057356 calcyclin binding protein CACYBP 27101 NM_001007214 /// NM_014412 /// XM_005245092 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0060416 // response to growth hormone // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030877 // beta-catenin destruction complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 111.23 315.89 3.68 0.01 0.02 -4.48
212656_at 212656_at AF110399 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF110399.1 /DEF=Homo sapiens elongation factor Ts mRNA, nuclear gene encoding mitochondrial protein, complete cds. /FEA=CDS /PROD=elongation factor Ts /DB_XREF=gi:4416085 /UG=Hs.3273 Ts translation elongation factor, mitochondrial /FL=gb:AF110399.1 AF110399 Ts translation elongation factor, mitochondrial TSFM 10102 NM_001172695 /// NM_001172696 /// NM_001172697 /// NM_005726 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation /// 0032784 // regulation of DNA-templated transcription, elongation // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 41.27 109.46 3.68 0.01 0.02 -4.48
204147_s_at 204147_s_at NM_007111 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007111.1 /DEF=Homo sapiens transcription factor Dp-1 (TFDP1), mRNA. /FEA=mRNA /GEN=TFDP1 /PROD=transcription factor Dp-1 /DB_XREF=gi:6005899 /UG=Hs.279576 transcription factor Dp-1 /FL=gb:L23959.1 gb:NM_007111.1 NM_007111 transcription factor Dp-1 TFDP1 7027 NM_007111 /// NR_026580 /// XM_005268326 /// XM_005268327 /// XM_005268328 /// XM_005268330 /// XM_005268331 /// XM_006719977 /// XM_006719978 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction 44.30 73.38 3.68 0.01 0.02 -4.48
215548_s_at 215548_s_at AB020724 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB020724.1 /DEF=Homo sapiens mRNA for KIAA0917 protein, partial cds. /FEA=mRNA /GEN=KIAA0917 /PROD=KIAA0917 protein /DB_XREF=gi:4240322 /UG=Hs.27023 vesicle transport-related protein AB020724 sec1 family domain containing 1 SCFD1 23256 NM_001257376 /// NM_001283031 /// NM_001283032 /// NM_001283033 /// NM_016106 /// NM_182835 /// XM_005267469 /// XR_429299 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0006892 // post-Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from expression pattern /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0060628 // regulation of ER to Golgi vesicle-mediated transport // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // inferred from sequence or structural similarity /// 0005801 // cis-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from sequence or structural similarity /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from sequence or structural similarity /// 0047485 // protein N-terminus binding // inferred from electronic annotation 53.93 134.74 3.68 0.01 0.02 -4.48
203550_s_at 203550_s_at NM_006589 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006589.1 /DEF=Homo sapiens chromosome 1 open reading frame 2 (C1ORF2), mRNA. /FEA=mRNA /GEN=C1ORF2 /PROD=chromosome 1 open reading frame 2 /DB_XREF=gi:5729751 /UG=Hs.19554 chromosome 1 open reading frame 2 /FL=gb:NM_006589.1 NM_006589 family with sequence similarity 189, member B FAM189B 10712 NM_001267608 /// NM_006589 /// NM_198264 /// XM_005244845 /// XM_005244847 /// XM_005244848 /// XM_005276738 /// XM_005276740 /// XM_005276741 /// XM_006711126 /// XM_006711127 /// XM_006726209 /// XM_006726210 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0050699 // WW domain binding // inferred from physical interaction 81.23 164.41 3.68 0.01 0.02 -4.48
211668_s_at 211668_s_at K03226 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:K03226.1 /DEF=Human preprourokinase mRNA, complete cds. /FEA=mRNA /GEN=PLAU /DB_XREF=gi:340155 /FL=gb:K03226.1 K03226 plasminogen activator, urokinase PLAU 5328 NM_001145031 /// NM_002658 /// XM_006717893 0001666 // response to hypoxia // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007599 // hemostasis // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from direct assay /// 0014909 // smooth muscle cell migration // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042730 // fibrinolysis // traceable author statement /// 0061041 // regulation of wound healing // inferred by curator /// 2000097 // regulation of smooth muscle cell-matrix adhesion // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -53.27 128.91 -3.68 0.01 0.02 -4.48
200740_s_at 200740_s_at NM_006936 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006936.1 /DEF=Homo sapiens SMT3 (suppressor of mif two 3, yeast) homolog 1 (SMT3H1), mRNA. /FEA=mRNA /GEN=SMT3H1 /PROD=SMT3 (suppressor of mif two 3, yeast) homolog 1 /DB_XREF=gi:5902095 /UG=Hs.85119 SMT3 (suppressor of mif two 3, yeast) homolog 1 /FL=gb:BC000036.1 gb:NM_006936.1 NM_006936 small ubiquitin-like modifier 3 SUMO3 6612 NM_001286416 /// NM_006936 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // traceable author statement /// 0034504 // protein localization to nucleus // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 2000060 // positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0000776 // kinetochore // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019789 // SUMO ligase activity // inferred from electronic annotation 128.13 606.21 3.68 0.01 0.02 -4.48
203208_s_at 203208_s_at NM_014637 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014637.1 /DEF=Homo sapiens KIAA0009 gene product (KIAA0009), mRNA. /FEA=mRNA /GEN=KIAA0009 /PROD=KIAA0009 gene product /DB_XREF=gi:7661853 /UG=Hs.170198 KIAA0009 gene product /FL=gb:D13634.1 gb:NM_014637.1 NM_014637 mitochondrial fission regulator 1 MTFR1 9650 NM_001145838 /// NM_001145839 /// NM_014637 /// XM_005251327 /// XM_006716484 0000266 // mitochondrial fission // inferred from sequence or structural similarity /// 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0009060 // aerobic respiration // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay 57.50 126.80 3.68 0.01 0.02 -4.48
208783_s_at 208783_s_at AL570661 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL570661 /FEA=EST /DB_XREF=gi:12927188 /DB_XREF=est:AL570661 /CLONE=CS0DI021YG18 (3 prime) /UG=Hs.83532 membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen) /FL=gb:M58050.1 AL570661 CD46 molecule, complement regulatory protein CD46 4179 NM_002389 /// NM_153826 /// NM_172350 /// NM_172351 /// NM_172352 /// NM_172353 /// NM_172354 /// NM_172355 /// NM_172356 /// NM_172357 /// NM_172358 /// NM_172359 /// NM_172360 /// NM_172361 0002250 // adaptive immune response // inferred by curator /// 0002376 // immune system process // inferred from electronic annotation /// 0002456 // T cell mediated immunity // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007338 // single fertilization // inferred from electronic annotation /// 0008593 // regulation of Notch signaling pathway // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030449 // regulation of complement activation // traceable author statement /// 0032613 // interleukin-10 production // inferred from direct assay /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0035581 // sequestering of extracellular ligand from receptor // inferred from direct assay /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0043382 // positive regulation of memory T cell differentiation // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045591 // positive regulation of regulatory T cell differentiation // inferred from direct assay /// 0045916 // negative regulation of complement activation // inferred from electronic annotation /// 0071636 // positive regulation of transforming growth factor beta production // inferred from direct assay 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0002079 // inner acrosomal membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001848 // complement binding // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from physical interaction 68.97 295.66 3.67 0.01 0.02 -4.48
220607_x_at 220607_x_at NM_016397 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016397.1 /DEF=Homo sapiens TH1 drosophila homolog (HSPC130), mRNA. /FEA=mRNA /GEN=HSPC130 /PROD=TH1 drosophila homolog /DB_XREF=gi:7705462 /UG=Hs.5184 TH1 drosophila homolog /FL=gb:AF161479.1 gb:NM_016397.1 NM_016397 negative elongation factor complex member C/D NELFCD 51497 NM_016397 /// NM_198976 /// XR_244142 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006414 // translational elongation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0032021 // NELF complex // inferred from direct assay 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 51.03 342.41 3.67 0.01 0.02 -4.48
217196_s_at 217196_s_at AL110158 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL110158.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586F0424 (from clone DKFZp586F0424); partial cds. /FEA=mRNA /GEN=DKFZp586F0424 /PROD=hypothetical protein /DB_XREF=gi:5817061 /UG=Hs.23585 KIAA1078 protein AL110158 calmodulin regulated spectrin-associated protein family, member 2 CAMSAP2 23271 NM_203459 /// XM_005245040 /// XM_005245041 /// XM_005245042 0000226 // microtubule cytoskeleton organization // inferred from mutant phenotype /// 0033043 // regulation of organelle organization // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0051011 // microtubule minus-end binding // inferred from direct assay -48.80 167.25 -3.67 0.01 0.02 -4.48
210648_x_at 210648_x_at AB047360 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB047360.1 /DEF=Homo sapiens SNX 3A mRNA for sorting nexin 3A, complete cds. /FEA=mRNA /GEN=SNX 3A /PROD=sorting nexin 3A /DB_XREF=gi:12957159 /UG=Hs.12102 sorting nexin 3 /FL=gb:AB047360.1 AB047360 sorting nexin 3 SNX3 8724 NM_003795 /// NM_152827 /// NM_152828 /// XM_005267192 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006897 // endocytosis // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042541 // hemoglobin biosynthetic process // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from direct assay /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation 136.65 1174.78 3.67 0.01 0.02 -4.48
221570_s_at 221570_s_at AF201938 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF201938.1 /DEF=Homo sapiens DC3 (DC3) mRNA, complete cds. /FEA=mRNA /GEN=DC3 /PROD=DC3 /DB_XREF=gi:9295179 /UG=Hs.273063 HSPC133 protein /FL=gb:AF201938.1 AF201938 methyltransferase like 5 METTL5 29081 NM_001293186 /// NM_001293187 /// NM_014168 /// XM_005246478 /// XM_005246479 /// XM_006712458 0001510 // RNA methylation // inferred from electronic annotation /// 0006479 // protein methylation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009452 // 7-methylguanosine RNA capping // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 47.70 258.95 3.67 0.01 0.02 -4.48
209882_at 209882_at AF084462 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF084462.1 /DEF=Homo sapiens GTP-binding protein ROC1 (ROC1) mRNA, complete cds. /FEA=mRNA /GEN=ROC1 /PROD=GTP-binding protein ROC1 /DB_XREF=gi:4234917 /UG=Hs.96038 Ric (Drosophila)-like, expressed in many tissues /FL=gb:U71203.1 gb:U78165.1 gb:AF084462.1 gb:NM_006912.1 AF084462 Ras-like without CAAX 1 RIT1 6016 NM_001256820 /// NM_001256821 /// NM_006912 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation -65.73 196.01 -3.67 0.01 0.02 -4.48
221496_s_at 221496_s_at D64109 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D64109.1 /DEF=Homo sapiens mRNA for tob family, complete cds. /FEA=mRNA /PROD=tob family /DB_XREF=gi:1469154 /UG=Hs.4994 transducer of ERBB2, 2 /FL=gb:D64109.1 gb:AB035207.1 gb:NM_016272.1 D64109 transducer of ERBB2, 2 TOB2 10766 NM_016272 /// XM_005261315 /// XM_006724105 0007292 // female gamete generation // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045778 // positive regulation of ossification // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0042809 // vitamin D receptor binding // inferred from electronic annotation -46.92 50.84 -3.67 0.01 0.02 -4.48
222021_x_at 222021_x_at AI348006 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI348006 /FEA=EST /DB_XREF=gi:4085212 /DB_XREF=est:qp61b05.x1 /CLONE=IMAGE:1927473 /UG=Hs.469 succinate dehydrogenase complex, subunit A, flavoprotein (Fp) AI348006 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 /// succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2 SDHAP1 /// SDHAP2 255812 /// 727956 NR_003264 /// NR_003265 0055114 // oxidation-reduction process // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 77.52 353.41 3.67 0.01 0.02 -4.48
212476_at 212476_at D26069 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D26069.1 /DEF=Human mRNA for KIAA0041 gene, partial cds. /FEA=mRNA /GEN=KIAA0041 /DB_XREF=gi:436227 /UG=Hs.24340 centaurin beta2 D26069 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 ACAP2 23527 NM_012287 /// XM_006713557 /// XM_006713558 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0036010 // protein localization to endosome // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 1990090 // cellular response to nerve growth factor stimulus // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 42.45 73.42 3.67 0.01 0.02 -4.48
201695_s_at 201695_s_at NM_000270 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000270.1 /DEF=Homo sapiens nucleoside phosphorylase (NP), mRNA. /FEA=mRNA /GEN=NP /PROD=purine nucleoside phosphorylase /DB_XREF=gi:4557800 /UG=Hs.75514 nucleoside phosphorylase /FL=gb:NM_000270.1 NM_000270 purine nucleoside phosphorylase PNP 4860 NM_000270 0006139 // nucleobase-containing compound metabolic process // inferred from direct assay /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006148 // inosine catabolic process // inferred from direct assay /// 0006195 // purine nucleotide catabolic process // traceable author statement /// 0006738 // nicotinamide riboside catabolic process // inferred from direct assay /// 0006955 // immune response // inferred from mutant phenotype /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0034356 // NAD biosynthesis via nicotinamide riboside salvage pathway // inferred from genetic interaction /// 0034418 // urate biosynthetic process // inferred from direct assay /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from mutant phenotype /// 0043101 // purine-containing compound salvage // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from direct assay /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0070970 // interleukin-2 secretion // inferred from mutant phenotype 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001882 // nucleoside binding // inferred from direct assay /// 0002060 // purine nucleobase binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004731 // purine-nucleoside phosphorylase activity // not recorded /// 0004731 // purine-nucleoside phosphorylase activity // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation /// 0042301 // phosphate ion binding // inferred from direct assay 164.60 548.27 3.67 0.01 0.02 -4.48
201752_s_at 201752_s_at AI763123 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI763123 /FEA=EST /DB_XREF=gi:5178790 /DB_XREF=est:wi06f09.x1 /CLONE=IMAGE:2389481 /UG=Hs.324470 adducin 3 (gamma) /FL=gb:D67031.1 gb:NM_019903.1 AI763123 adducin 3 (gamma) ADD3 120 NM_001121 /// NM_016824 /// NM_019903 /// XM_005269529 /// XM_005269530 /// XM_005269531 /// XM_005269533 /// XM_005269534 /// XM_005269535 /// XM_006717626 /// XM_006717627 /// XM_006717628 /// XM_006717629 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // traceable author statement 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005516 // calmodulin binding // inferred from electronic annotation -54.90 240.95 -3.67 0.01 0.02 -4.48
204079_at 204079_at NM_003595 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003595.1 /DEF=Homo sapiens tyrosylprotein sulfotransferase 2 (TPST2), mRNA. /FEA=mRNA /GEN=TPST2 /PROD=tyrosylprotein sulfotransferase 2 /DB_XREF=gi:4507666 /UG=Hs.26350 tyrosylprotein sulfotransferase 2 /FL=gb:AL136623.1 gb:BC001057.1 gb:AF061254.1 gb:AF049891.1 gb:NM_003595.1 NM_003595 tyrosylprotein sulfotransferase 2 TPST2 8459 NM_001008566 /// NM_003595 /// XM_006724338 0006478 // peptidyl-tyrosine sulfation // inferred from electronic annotation /// 0007342 // fusion of sperm to egg plasma membrane // inferred from electronic annotation /// 0060468 // prevention of polyspermy // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008476 // protein-tyrosine sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 37.98 85.11 3.66 0.01 0.02 -4.48
217294_s_at 217294_s_at U88968 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U88968.1 /DEF=Human alpha enolase like 1 (ENO1L1) mRNA, partial cds. /FEA=mRNA /GEN=ENO1L1 /PROD=alpha enolase like 1 /DB_XREF=gi:3282242 /UG=Hs.254105 enolase 1, (alpha) U88968 enolase 1, (alpha) ENO1 2023 NM_001201483 /// NM_001428 /// XM_006710433 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0009615 // response to virus // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0000015 // phosphopyruvate hydratase complex // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031305 // integral component of mitochondrial inner membrane // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0004634 // phosphopyruvate hydratase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016829 // lyase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -450.38 1217.29 -3.66 0.01 0.02 -4.48
218106_s_at 218106_s_at NM_018141 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018141.1 /DEF=Homo sapiens hypothetical protein FLJ10567 (FLJ10567), mRNA. /FEA=mRNA /GEN=FLJ10567 /PROD=hypothetical protein FLJ10567 /DB_XREF=gi:8922522 /UG=Hs.28444 hypothetical protein FLJ10567 /FL=gb:AF113220.1 gb:NM_018141.1 NM_018141 mitochondrial ribosomal protein S10 MRPS10 55173 NM_018141 /// XM_005249206 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 38.07 162.69 3.66 0.01 0.02 -4.48
213599_at 213599_at BE045993 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE045993 /FEA=EST /DB_XREF=gi:8363046 /DB_XREF=est:hd91c08.x4 /CLONE=IMAGE:2916878 /UG=Hs.116206 Opa-interacting protein 5 BE045993 Opa interacting protein 5 OIP5 11339 NM_007280 0006334 // nucleosome assembly // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007154 // cell communication // non-traceable author statement /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010369 // chromocenter // inferred from electronic annotation /// 0015030 // Cajal body // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 32.73 61.49 3.65 0.01 0.02 -4.48
203092_at 203092_at AF026030 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF026030.1 /DEF=Homo sapiens putative mitochondrial inner membrane protein import receptor (hTIM44) mRNA, nuclear gene encoding mitochondrial protein, complete cds. /FEA=mRNA /GEN=hTIM44 /PROD=putative mitochondrial inner membrane proteinimport receptor /DB_XREF=gi:4103601 /UG=Hs.123178 translocase of inner mitochondrial membrane 44 (yeast) homolog /FL=gb:AF026030.1 gb:NM_006351.1 AF026030 translocase of inner mitochondrial membrane 44 homolog (yeast) TIMM44 10469 NM_006351 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071806 // protein transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation -33.80 33.23 -3.65 0.01 0.02 -4.48
200683_s_at 200683_s_at BE964689 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE964689 /FEA=EST /DB_XREF=gi:11768267 /DB_XREF=est:601658226R1 /CLONE=IMAGE:3885630 /UG=Hs.108104 ubiquitin-conjugating enzyme E2L 3 /FL=gb:NM_003347.1 BE964689 ubiquitin-conjugating enzyme E2L 3 UBE2L3 7332 NM_001256355 /// NM_001256356 /// NM_003347 /// NM_198157 /// NR_028436 /// NR_046082 0000209 // protein polyubiquitination // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0071383 // cellular response to steroid hormone stimulus // inferred from mutant phenotype /// 0071385 // cellular response to glucocorticoid stimulus // inferred from direct assay 0000151 // ubiquitin ligase complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 59.80 290.73 3.65 0.01 0.02 -4.48
203553_s_at 203553_s_at NM_006575 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006575.1 /DEF=Homo sapiens mitogen-activated protein kinase kinase kinase kinase 5 (MAP4K5), mRNA. /FEA=mRNA /GEN=MAP4K5 /PROD=mitogen-activated protein kinase kinase kinasekinase /DB_XREF=gi:5729890 /UG=Hs.246970 mitogen-activated protein kinase kinase kinase kinase 5 /FL=gb:U77129.1 gb:NM_006575.1 NM_006575 mitogen-activated protein kinase kinase kinase kinase 5 MAP4K5 11183 NM_006575 /// NM_198794 /// XM_006720013 /// XM_006720014 0000165 // MAPK cascade // /// 0000185 // activation of MAPKKK activity // /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007257 // activation of JUN kinase activity // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008349 // MAP kinase kinase kinase kinase activity // /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -87.38 196.86 -3.65 0.01 0.02 -4.48
219235_s_at 219235_s_at NM_023923 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023923.1 /DEF=Homo sapiens hypothetical protein FLJ13171 (FLJ13171), mRNA. /FEA=mRNA /GEN=FLJ13171 /PROD=hypothetical protein FLJ13171 /DB_XREF=gi:12965188 /UG=Hs.225641 hypothetical protein FLJ13171 /FL=gb:AF130081.1 gb:NM_023923.1 NM_023923 phosphatase and actin regulator 4 PHACTR4 65979 NM_001048183 /// NM_023923 /// XM_005245970 /// XM_006710842 /// XM_006710843 /// XM_006710844 /// XM_006710845 /// XM_006710846 /// XM_006710847 /// XM_006710848 /// XM_006710849 /// XM_006710850 /// XM_006710851 /// XM_006710852 0001755 // neural crest cell migration // inferred from sequence or structural similarity /// 0001843 // neural tube closure // inferred from sequence or structural similarity /// 0007266 // Rho protein signal transduction // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0043085 // positive regulation of catalytic activity // inferred from sequence or structural similarity /// 0048484 // enteric nervous system development // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity /// 0061386 // closure of optic fissure // inferred from sequence or structural similarity /// 2001045 // negative regulation of integrin-mediated signaling pathway // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from sequence or structural similarity /// 0008157 // protein phosphatase 1 binding // inferred from sequence or structural similarity /// 0071862 // protein phosphatase type 1 activator activity // inferred from sequence or structural similarity 38.25 146.15 3.65 0.01 0.02 -4.48
209684_at 209684_at AL136924 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136924.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586G2120 (from clone DKFZp586G2120); complete cds. /FEA=mRNA /GEN=DKFZp586G2120 /PROD=hypothetical protein /DB_XREF=gi:12053342 /UG=Hs.62349 ras association (RalGDSAF-6) domain containing protein JC265 /FL=gb:AL136924.1 AL136924 Ras and Rab interactor 2 RIN2 54453 NM_001242581 /// NM_018993 /// XM_005260730 /// XM_005260731 /// XM_005260732 /// XM_005260733 /// XM_006723573 /// XM_006723574 /// XM_006723575 /// XM_006723576 /// XM_006723577 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // non-traceable author statement /// 0032313 // regulation of Rab GTPase activity // non-traceable author statement /// 0032851 // positive regulation of Rab GTPase activity // non-traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 0005083 // small GTPase regulator activity // non-traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0017112 // Rab guanyl-nucleotide exchange factor activity // non-traceable author statement -212.53 452.79 -3.65 0.01 0.02 -4.48
203663_s_at 203663_s_at NM_004255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004255.1 /DEF=Homo sapiens cytochrome c oxidase subunit Va (COX5A), mRNA. /FEA=mRNA /GEN=COX5A /PROD=cytochrome c oxidase subunit Va /DB_XREF=gi:4758037 /UG=Hs.181028 cytochrome c oxidase subunit Va /FL=gb:NM_004255.1 gb:M22760.1 NM_004255 cytochrome c oxidase subunit Va COX5A 9377 NM_004255 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 104.15 678.73 3.64 0.01 0.02 -4.48
204969_s_at 204969_s_at NM_002906 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002906.1 /DEF=Homo sapiens radixin (RDX), mRNA. /FEA=mRNA /GEN=RDX /PROD=radixin /DB_XREF=gi:4506466 /UG=Hs.250613 radixin /FL=gb:L02320.1 gb:NM_002906.1 NM_002906 radixin RDX 5962 NM_001260492 /// NM_001260493 /// NM_001260494 /// NM_001260495 /// NM_001260496 /// NM_002906 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from genetic interaction /// 0030033 // microvillus assembly // inferred from electronic annotation /// 0045176 // apical protein localization // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation /// 0061028 // establishment of endothelial barrier // inferred from genetic interaction 0001726 // ruffle // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030315 // T-tubule // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0032420 // stereocilium // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0051286 // cell tip // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -35.90 75.28 -3.64 0.01 0.02 -4.48
200651_at 200651_at NM_006098 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006098.1 /DEF=Homo sapiens guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (GNB2L1), mRNA. /FEA=mRNA /GEN=GNB2L1 /PROD=guanine nucleotide binding protein (G protein),beta polypeptide 2-like 1 /DB_XREF=gi:5174446 /UG=Hs.5662 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 /FL=gb:BC000214.1 gb:BC000366.1 gb:BC000672.1 gb:M24194.1 gb:NM_006098.1 NM_006098 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 /// small nucleolar RNA, C/D box 95 /// small nucleolar RNA, C/D box 96A GNB2L1 /// SNORD95 /// SNORD96A 10399 /// 619570 /// 619571 NM_006098 /// NR_002591 /// NR_002592 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030822 // positive regulation of cAMP catabolic process // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0032464 // positive regulation of protein homooligomerization // inferred from direct assay /// 0032464 // positive regulation of protein homooligomerization // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050765 // negative regulation of phagocytosis // inferred from mutant phenotype /// 0051302 // regulation of cell division // inferred from sequence or structural similarity /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from direct assay /// 0051898 // negative regulation of protein kinase B signaling // inferred from mutant phenotype /// 0051901 // positive regulation of mitochondrial depolarization // inferred from mutant phenotype /// 0061099 // negative regulation of protein tyrosine kinase activity // inferred from direct assay /// 0090003 // regulation of establishment of protein localization to plasma membrane // inferred from electronic annotation /// 1901299 // negative regulation of hydrogen peroxide-mediated programmed cell death // inferred from genetic interaction /// 2000114 // regulation of establishment of cell polarity // inferred from sequence or structural similarity /// 2000543 // positive regulation of gastrulation // inferred from sequence or structural similarity /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0001891 // phagocytic cup // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from mutant phenotype /// 0005829 // cytosol // inferred from mutant phenotype /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0030496 // midbody // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043204 // perikaryon // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005080 // protein kinase C binding // inferred from direct assay /// 0005102 // receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008200 // ion channel inhibitor activity // inferred from sequence or structural similarity /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from mutant phenotype /// 0019899 // enzyme binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0030292 // protein tyrosine kinase inhibitor activity // inferred from direct assay /// 0030971 // receptor tyrosine kinase binding // inferred from direct assay /// 0032947 // protein complex scaffold // traceable author statement /// 0042169 // SH2 domain binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -934.25 3248.12 -3.64 0.01 0.02 -4.48
201077_s_at 201077_s_at AF155235 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF155235.1 /DEF=Homo sapiens 15.5 kD RNA binding protein mRNA, complete cds. /FEA=mRNA /PROD=15.5 kD RNA binding protein /DB_XREF=gi:6318598 /UG=Hs.182255 non-histone chromosome protein 2 (S. cerevisiae)-like 1 /FL=gb:BC005358.1 gb:D50420.1 gb:AF091076.1 gb:NM_005008.1 gb:AF155235.1 AF155235 annexin A2 /// NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) ANXA2 /// NHP2L1 302 /// 4809 NM_001002857 /// NM_001002858 /// NM_001003796 /// NM_001136015 /// NM_004039 /// NM_005008 /// XM_005261620 /// XM_006724258 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001525 // angiogenesis // inferred from expression pattern /// 0001765 // membrane raft assembly // inferred from mutant phenotype /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006900 // membrane budding // inferred from mutant phenotype /// 0007589 // body fluid secretion // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // inferred from direct assay /// 0036035 // osteoclast development // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051099 // positive regulation of binding // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0071229 // cellular response to acid // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019897 // extrinsic component of plasma membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031428 // box C/D snoRNP complex // non-traceable author statement /// 0031902 // late endosome membrane // inferred from direct assay /// 0031982 // vesicle // inferred from electronic annotation /// 0035749 // myelin sheath adaxonal region // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0044354 // macropinosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from mutant phenotype /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0030515 // snoRNA binding // inferred from direct assay /// 0044548 // S100 protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -91.05 684.17 -3.64 0.01 0.02 -4.48
209153_s_at 209153_s_at M31523 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M31523.1 /DEF=Human transcription factor (E2A) mRNA, complete cds. /FEA=mRNA /GEN=TCF3 /DB_XREF=gi:339477 /UG=Hs.101047 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12E47) /FL=gb:M31523.1 M31523 transcription factor 3 TCF3 6929 NM_001136139 /// NM_003200 /// XM_005259620 /// XM_006722852 /// XM_006722853 /// XM_006722854 /// XM_006722855 /// XM_006722856 /// XM_006722857 /// XM_006722858 /// XM_006722859 /// XM_006722860 /// XM_006722861 /// XM_006722862 /// XM_006722863 /// XR_430150 /// XR_430151 /// XR_430152 /// XR_430153 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0002326 // B cell lineage commitment // inferred from direct assay /// 0002326 // B cell lineage commitment // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030098 // lymphocyte differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // non-traceable author statement /// 0030890 // positive regulation of B cell proliferation // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033152 // immunoglobulin V(D)J recombination // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048468 // cell development // inferred from electronic annotation /// 0048541 // Peyer's patch development // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 2000045 // regulation of G1/S transition of mitotic cell cycle // inferred from direct assay 0000788 // nuclear nucleosome // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070491 // repressing transcription factor binding // inferred from physical interaction /// 0070644 // vitamin D response element binding // inferred from direct assay /// 0070888 // E-box binding // inferred from direct assay /// 0070888 // E-box binding // inferred from sequence or structural similarity 68.22 111.19 3.64 0.01 0.02 -4.48
211529_x_at 211529_x_at M90684 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M90684.1 /DEF=Human lymphocyte antigen (HLA-G2.1) mRNA, complete cds. /FEA=mRNA /GEN=HLA-G /PROD=b2 microglobulin /DB_XREF=gi:188467 /UG=Hs.73885 HLA-G histocompatibility antigen, class I, G /FL=gb:M90684.1 M90684 major histocompatibility complex, class I, G HLA-G 3135 NM_002127 /// XM_006715080 /// XM_006725041 /// XM_006725700 /// XM_006725909 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002666 // positive regulation of T cell tolerance induction // inferred from mutant phenotype /// 0002767 // immune response-inhibiting cell surface receptor signaling pathway // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0006968 // cellular defense response // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0042130 // negative regulation of T cell proliferation // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045591 // positive regulation of regulatory T cell differentiation // inferred from mutant phenotype /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 2001199 // negative regulation of dendritic cell differentiation // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042803 // protein homodimerization activity // non-traceable author statement -127.43 327.84 -3.64 0.01 0.02 -4.48
202320_at 202320_at NM_001520 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001520.1 /DEF=Homo sapiens general transcription factor IIIC, polypeptide 1 (alpha subunit, 220kD ) (GTF3C1), mRNA. /FEA=mRNA /GEN=GTF3C1 /PROD=general transcription factor IIIC, polypeptide 1(alpha subunit, 220kD ) /DB_XREF=gi:4753160 /UG=Hs.331 general transcription factor IIIC, polypeptide 1 (alpha subunit, 220kD ) /FL=gb:U02619.1 gb:NM_001520.1 NM_001520 general transcription factor IIIC, polypeptide 1, alpha 220kDa GTF3C1 2975 NM_001286242 /// NM_001520 /// XM_006721042 0006351 // transcription, DNA-templated // inferred by curator /// 0006383 // transcription from RNA polymerase III promoter // inferred by curator /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0009303 // rRNA transcription // traceable author statement /// 0009304 // tRNA transcription // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0042791 // 5S class rRNA transcription from RNA polymerase III type 1 promoter // inferred by curator /// 0042797 // tRNA transcription from RNA polymerase III promoter // inferred by curator 0000127 // transcription factor TFIIIC complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction 48.50 75.72 3.64 0.01 0.02 -4.48
200842_s_at 200842_s_at AI475965 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI475965 /FEA=EST /DB_XREF=gi:4329010 /DB_XREF=est:tl96a09.x1 /CLONE=IMAGE:2154904 /UG=Hs.55921 glutamyl-prolyl-tRNA synthetase /FL=gb:NM_004446.1 AI475965 glutamyl-prolyl-tRNA synthetase EPRS 2058 NM_004446 0006412 // translation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006424 // glutamyl-tRNA aminoacylation // inferred from electronic annotation /// 0006433 // prolyl-tRNA aminoacylation // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0043039 // tRNA aminoacylation // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // traceable author statement /// 0004827 // proline-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation /// 0035613 // RNA stem-loop binding // inferred from direct assay -147.68 340.81 -3.64 0.01 0.02 -4.48
202817_s_at 202817_s_at NM_005637 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005637.1 /DEF=Homo sapiens synovial sarcoma, translocated to X chromosome (SSXT), mRNA. /FEA=mRNA /GEN=SSXT /PROD=synovial sarcoma, translocated to X chromosome /DB_XREF=gi:5032124 /UG=Hs.153221 synovial sarcoma, translocated to X chromosome /FL=gb:NM_005637.1 NM_005637 synovial sarcoma translocation, chromosome 18 SS18 6760 NM_001007559 /// NM_005637 /// XM_005258334 /// XM_006722527 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay 40.27 57.01 3.64 0.01 0.02 -4.48
200039_s_at 200039_s_at NM_002794 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002794.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, beta type, 2 (PSMB2), mRNA. /FEA=mRNA /GEN=PSMB2 /PROD=proteasome (prosome, macropain) subunit, betatype, 2 /DB_XREF=gi:4506194 /UG=Hs.1390 proteasome (prosome, macropain) subunit, beta type, 2 /FL=gb:BC000268.1 gb:NM_002794.1 gb:D26599.1 NM_002794 proteasome (prosome, macropain) subunit, beta type, 2 PSMB2 5690 NM_001199779 /// NM_001199780 /// NM_002794 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -133.00 799.52 -3.64 0.01 0.02 -4.48
209091_s_at 209091_s_at AF263293 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF263293.1 /DEF=Homo sapiens endophilin B1 mRNA, complete cds. /FEA=mRNA /PROD=endophilin B1 /DB_XREF=gi:8118529 /UG=Hs.136309 SH3-containing protein SH3GLB1 /FL=gb:AF263293.1 AF263293 SH3-domain GRB2-like endophilin B1 SH3GLB1 51100 NM_001206651 /// NM_001206652 /// NM_001206653 /// NM_016009 /// XM_006710672 /// XM_006710673 0006654 // phosphatidic acid biosynthetic process // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0051084 // 'de novo' posttranslational protein folding // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from direct assay /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005504 // fatty acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0042171 // lysophosphatidic acid acyltransferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction -267.18 695.14 -3.64 0.01 0.02 -4.48
208960_s_at 208960_s_at BE675435 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE675435 /FEA=EST /DB_XREF=gi:10035976 /DB_XREF=est:7f09a11.x1 /CLONE=IMAGE:3294140 /UG=Hs.285313 core promoter element binding protein /FL=gb:BC000311.1 gb:BC004301.1 gb:AF001461.1 gb:AB017493.1 gb:NM_001300.2 BE675435 Kruppel-like factor 6 KLF6 1316 NM_001008490 /// NM_001160124 /// NM_001160125 /// NM_001300 /// NR_027653 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0016049 // cell growth // non-traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030183 // B cell differentiation // non-traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // traceable author statement 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -98.98 243.49 -3.63 0.01 0.02 -4.48
213668_s_at 213668_s_at AI989477 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI989477 /FEA=EST /DB_XREF=gi:5836358 /DB_XREF=est:ws25b11.x1 /CLONE=IMAGE:2498205 /UG=Hs.83484 SRY (sex determining region Y)-box 4 AI989477 SRY (sex determining region Y)-box 4 SOX4 6659 NM_003107 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001841 // neural tube formation // inferred from sequence or structural similarity /// 0002328 // pro-B cell differentiation // inferred from sequence or structural similarity /// 0003183 // mitral valve morphogenesis // inferred from sequence or structural similarity /// 0003211 // cardiac ventricle formation // inferred from sequence or structural similarity /// 0003215 // cardiac right ventricle morphogenesis // inferred from sequence or structural similarity /// 0003289 // atrial septum primum morphogenesis // inferred from sequence or structural similarity /// 0003357 // noradrenergic neuron differentiation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from mutant phenotype /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014009 // glial cell proliferation // inferred from sequence or structural similarity /// 0021510 // spinal cord development // inferred from sequence or structural similarity /// 0021522 // spinal cord motor neuron differentiation // inferred from sequence or structural similarity /// 0021782 // glial cell development // inferred from sequence or structural similarity /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // inferred from mutant phenotype /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from sequence or structural similarity /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035910 // ascending aorta morphogenesis // inferred from sequence or structural similarity /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042769 // DNA damage response, detection of DNA damage // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046826 // negative regulation of protein export from nucleus // inferred from mutant phenotype /// 0048485 // sympathetic nervous system development // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0060070 // canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0060174 // limb bud formation // inferred from sequence or structural similarity /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060548 // negative regulation of cell death // inferred from sequence or structural similarity /// 0060563 // neuroepithelial cell differentiation // inferred from sequence or structural similarity /// 0060993 // kidney morphogenesis // inferred from sequence or structural similarity /// 0071333 // cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 2000761 // positive regulation of N-terminal peptidyl-lysine acetylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001046 // core promoter sequence-specific DNA binding // inferred from direct assay /// 0001071 // nucleic acid binding transcription factor activity // inferred from mutant phenotype /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -42.60 118.92 -3.63 0.01 0.02 -4.48
221965_at 221965_at AI990326 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI990326 /FEA=EST /DB_XREF=gi:5837207 /DB_XREF=est:ws39d06.x1 /CLONE=IMAGE:2499563 /UG=Hs.86178 M-phase phosphoprotein 9 AI990326 39.70 68.08 3.63 0.01 0.02 -4.48
211928_at 211928_at AB002323 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB002323.1 /DEF=Human mRNA for KIAA0325 gene, partial cds. /FEA=mRNA /GEN=KIAA0325 /DB_XREF=gi:2224590 /UG=Hs.7720 dynein, cytoplasmic, heavy polypeptide 1 AB002323 dynein, cytoplasmic 1, heavy chain 1 DYNC1H1 1778 NM_001376 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007052 // mitotic spindle organization // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0033962 // cytoplasmic mRNA processing body assembly // inferred from sequence or structural similarity /// 0034063 // stress granule assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // non-traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030286 // dynein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042623 // ATPase activity, coupled // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -116.37 491.86 -3.63 0.01 0.02 -4.48
221090_s_at 221090_s_at NM_018233 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018233.1 /DEF=Homo sapiens hypothetical protein FLJ10826 (FLJ10826), mRNA. /FEA=mRNA /GEN=FLJ10826 /PROD=hypothetical protein FLJ10826 /DB_XREF=gi:8922693 /UG=Hs.24809 hypothetical protein FLJ10826 /FL=gb:NM_018233.1 NM_018233 2-oxoglutarate and iron-dependent oxygenase domain containing 1 OGFOD1 55239 NM_018233 0006449 // regulation of translational termination // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0018126 // protein hydroxylation // inferred from direct assay /// 0019511 // peptidyl-proline hydroxylation // inferred from direct assay /// 0034063 // stress granule assembly // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from mutant phenotype 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0031543 // peptidyl-proline dioxygenase activity // inferred from direct assay /// 0031544 // peptidyl-proline 3-dioxygenase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 51.83 169.91 3.63 0.01 0.02 -4.48
212133_at 212133_at AI681536 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI681536 /FEA=EST /DB_XREF=gi:4891718 /DB_XREF=est:tx47e03.x1 /CLONE=IMAGE:2272732 /UG=Hs.83724 hypothetical protein MGC5466 AI681536 non imprinted in Prader-Willi/Angelman syndrome 2 NIPA2 81614 NM_001008860 /// NM_001008892 /// NM_001008894 /// NM_001184888 /// NM_001184889 /// NM_030922 /// XM_005272546 /// XM_005272547 /// XM_005272548 /// XM_005272549 /// XM_005272550 /// XM_005272552 /// XM_005272553 /// XM_006720364 /// XM_006720365 /// XM_006720366 /// XM_006720367 /// XM_006720368 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015693 // magnesium ion transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0015095 // magnesium ion transmembrane transporter activity // inferred from electronic annotation 39.55 75.03 3.62 0.01 0.02 -4.48
217777_s_at 217777_s_at NM_016395 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016395.1 /DEF=Homo sapiens butyrate-induced transcript 1 (HSPC121), mRNA. /FEA=mRNA /GEN=HSPC121 /PROD=butyrate-induced transcript 1 /DB_XREF=gi:7705458 /UG=Hs.260622 butyrate-induced transcript 1 /FL=gb:AF161470.1 gb:NM_016395.1 NM_016395 protein tyrosine phosphatase-like A domain containing 1 PTPLAD1 51495 NM_016395 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // non-traceable author statement /// 0043547 // positive regulation of GTPase activity // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005096 // GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016829 // lyase activity // inferred from electronic annotation 48.15 128.12 3.62 0.01 0.02 -4.48
208114_s_at 208114_s_at NM_030980 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030980.1 /DEF=Homo sapiens hypothetical protein FLJ12671 (FLJ12671), mRNA. /FEA=mRNA /GEN=FLJ12671 /PROD=hypothetical protein FLJ12671 /DB_XREF=gi:13569959 /FL=gb:NM_030980.1 NM_030980 interferon stimulated exonuclease gene 20kDa-like 2 ISG20L2 81875 NM_030980 /// XM_005245516 /// XM_005245517 /// XM_005245518 /// XM_006711560 /// XM_006711561 0008152 // metabolic process // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 46.17 113.69 3.62 0.01 0.02 -4.48
203447_at 203447_at AU157008 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU157008 /FEA=EST /DB_XREF=gi:11018529 /DB_XREF=est:AU157008 /CLONE=PLACE1005711 /UG=Hs.193725 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 /FL=gb:NM_005047.1 AU157008 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 PSMD5 5711 NM_001270427 /// NM_005047 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070682 // proteasome regulatory particle assembly // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0008540 // proteasome regulatory particle, base subcomplex // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044183 // protein binding involved in protein folding // inferred from electronic annotation 62.97 169.89 3.62 0.01 0.02 -4.48
200094_s_at 200094_s_at AI004246 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI004246 /FEA=EST /DB_XREF=gi:3213756 /DB_XREF=est:ou03g06.x1 /CLONE=IMAGE:1625242 /UG=Hs.75309 eukaryotic translation elongation factor 2 AI004246 eukaryotic translation elongation factor 2 EEF2 1938 NM_001961 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from genetic interaction /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from genetic interaction 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005844 // polysome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008494 // translation activator activity // inferred from genetic interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -619.53 1762.54 -3.62 0.01 0.02 -4.48
211825_s_at 211825_s_at AF327066 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF327066.1 /DEF=Homo sapiens Ewings sarcoma EWS-Fli1 (type 1) oncogene mRNA, complete cds. /FEA=CDS /PROD=Ewings sarcoma EWS-Fli1 (type 1) oncogene /DB_XREF=gi:12963354 /UG=Hs.129953 Ewing sarcoma breakpoint region 1 /FL=gb:AF327066.1 AF327066 Fli-1 proto-oncogene, ETS transcription factor FLI1 2313 NM_001167681 /// NM_001271010 /// NM_001271012 /// NM_002017 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007599 // hemostasis // traceable author statement /// 0008015 // blood circulation // inferred from electronic annotation /// 0009887 // organ morphogenesis // traceable author statement /// 0030154 // cell differentiation // not recorded /// 0035855 // megakaryocyte development // inferred from electronic annotation 0005634 // nucleus // not recorded 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from electronic annotation /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -123.25 198.07 -3.61 0.01 0.02 -4.48
214168_s_at 214168_s_at AA813018 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA813018 /FEA=EST /DB_XREF=gi:2883082 /DB_XREF=est:aj44b11.s1 /CLONE=1393149 /UG=Hs.74614 tight junction protein 1 (zona occludens 1) AA813018 tight junction protein 1 TJP1 7082 NM_003257 /// NM_175610 /// XM_005254616 /// XM_005254617 /// XM_005254618 /// XM_005254619 /// XM_005254620 /// XM_005254621 /// XM_006720660 /// XM_006720661 /// XM_006725553 /// XM_006725554 /// XM_006725555 /// XM_006725556 /// XM_006725557 /// XM_006725558 /// XM_006725559 /// XM_006725560 0001825 // blastocyst formation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007043 // cell-cell junction assembly // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0035329 // hippo signaling // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043116 // negative regulation of vascular permeability // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0071000 // response to magnetism // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 1901350 // cell-cell signaling involved in cell-cell junction organization // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016327 // apicolateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0043296 // apical junction complex // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0046581 // intercellular canaliculus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation -48.40 159.05 -3.61 0.01 0.02 -4.48
202266_at 202266_at NM_016614 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016614.1 /DEF=Homo sapiens TRAF and TNF receptor-associated protein (AD022), mRNA. /FEA=mRNA /GEN=AD022 /PROD=TRAF and TNF receptor-associated protein /DB_XREF=gi:7705261 /UG=Hs.46847 TRAF and TNF receptor-associated protein /FL=gb:AF201687.1 gb:AF223469.1 gb:NM_016614.1 NM_016614 tyrosyl-DNA phosphodiesterase 2 TDP2 51567 NM_016614 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from direct assay /// 0006302 // double-strand break repair // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0045171 // intercellular bridge // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // traceable author statement /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003714 // transcription corepressor activity // traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0036317 // tyrosyl-RNA phosphodiesterase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070260 // 5'-tyrosyl-DNA phosphodiesterase activity // inferred from direct assay /// 0070260 // 5'-tyrosyl-DNA phosphodiesterase activity // inferred from mutant phenotype 55.80 164.43 3.61 0.01 0.02 -4.48
205128_x_at 205128_x_at NM_000962 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000962.1 /DEF=Homo sapiens prostaglandin-endoperoxide synthase 1 (prostaglandin GH synthase and cyclooxygenase) (PTGS1), mRNA. /FEA=mRNA /GEN=PTGS1 /PROD=prostaglandin-endoperoxide synthase 1(prostaglandin GH synthase and cyclooxygenase) /DB_XREF=gi:11386140 /UG=Hs.88474 prostaglandin-endoperoxide synthase 1 (prostaglandin GH synthase and cyclooxygenase) /FL=gb:NM_000962.1 gb:M59979.1 NM_000962 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) PTGS1 5742 NM_000962 /// NM_001271164 /// NM_001271165 /// NM_001271166 /// NM_001271367 /// NM_001271368 /// NM_080591 /// XM_005252105 /// XM_006717192 0001516 // prostaglandin biosynthetic process // inferred from sequence or structural similarity /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0019371 // cyclooxygenase pathway // inferred from direct assay /// 0019371 // cyclooxygenase pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from sequence or structural similarity 0004601 // peroxidase activity // traceable author statement /// 0004666 // prostaglandin-endoperoxide synthase activity // inferred from direct assay /// 0004666 // prostaglandin-endoperoxide synthase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 34.22 148.49 3.61 0.01 0.02 -4.48
200850_s_at 200850_s_at NM_006621 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006621.1 /DEF=Homo sapiens S-adenosylhomocysteine hydrolase-like 1 (AHCYL1), mRNA. /FEA=mRNA /GEN=AHCYL1 /PROD=S-adenosylhomocysteine hydrolase-like 1 /DB_XREF=gi:5729723 /UG=Hs.4113 S-adenosylhomocysteine hydrolase-like 1 /FL=gb:U82761.1 gb:NM_006621.1 NM_006621 adenosylhomocysteinase-like 1 AHCYL1 10768 NM_001242673 /// NM_001242674 /// NM_001242675 /// NM_001242676 /// NM_006621 0006378 // mRNA polyadenylation // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0031440 // regulation of mRNA 3'-end processing // inferred from electronic annotation /// 0032412 // regulation of ion transmembrane transporter activity // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0004455 // ketol-acid reductoisomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 109.22 440.69 3.61 0.01 0.02 -4.48
201393_s_at 201393_s_at NM_000876 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000876.1 /DEF=Homo sapiens insulin-like growth factor 2 receptor (IGF2R), mRNA. /FEA=mRNA /GEN=IGF2R /PROD=insulin-like growth factor 2 receptor /DB_XREF=gi:4504610 /UG=Hs.76473 insulin-like growth factor 2 receptor /FL=gb:J03528.1 gb:NM_000876.1 NM_000876 insulin-like growth factor 2 receptor IGF2R 3482 NM_000876 0001889 // liver development // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // traceable author statement 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005770 // late endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030140 // trans-Golgi network transport vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001948 // glycoprotein binding // inferred from direct assay /// 0001965 // G-protein alpha-subunit binding // inferred from electronic annotation /// 0001972 // retinoic acid binding // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005010 // insulin-like growth factor-activated receptor activity // traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0031995 // insulin-like growth factor II binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from direct assay -60.75 201.60 -3.61 0.01 0.02 -4.48
213302_at 213302_at AL044326 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL044326 /FEA=EST /DB_XREF=gi:5432548 /DB_XREF=est:DKFZp434A142_s1 /CLONE=DKFZp434A142 /UG=Hs.105478 phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) AL044326 phosphoribosylformylglycinamidine synthase PFAS 5198 NM_012393 /// XM_006721546 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0006189 // 'de novo' IMP biosynthetic process // non-traceable author statement /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004642 // phosphoribosylformylglycinamidine synthase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 73.53 84.99 3.60 0.01 0.02 -4.48
206474_at 206474_at NM_002595 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002595.1 /DEF=Homo sapiens PCTAIRE protein kinase 2 (PCTK2), mRNA. /FEA=mRNA /GEN=PCTK2 /PROD=PCTAIRE protein kinase 2 /DB_XREF=gi:4505648 /UG=Hs.301511 PCTAIRE protein kinase 2 /FL=gb:NM_002595.1 NM_002595 cyclin-dependent kinase 17 CDK17 5128 NM_001170464 /// NM_002595 /// XM_006719444 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -39.33 136.74 -3.60 0.01 0.02 -4.48
213427_at 213427_at NM_006638 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_006638.1 /DEF=Homo sapiens ribonuclease P, 40kD subunit (RPP40), mRNA. /FEA=CDS /GEN=RPP40 /PROD=ribonuclease P, 40kD subunit /DB_XREF=gi:5730016 /UG=Hs.115823 ribonuclease P, 40kD subunit /FL=gb:NM_006638.1 NM_006638 ribonuclease P/MRP 40kDa subunit RPP40 10799 NM_001286132 /// NM_001286133 /// NM_006638 0008033 // tRNA processing // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // traceable author statement /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // traceable author statement 0005634 // nucleus // traceable author statement /// 0005655 // nucleolar ribonuclease P complex // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 34.67 116.39 3.60 0.01 0.02 -4.48
218651_s_at 218651_s_at NM_018357 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018357.1 /DEF=Homo sapiens hypothetical protein FLJ11196 (FLJ11196), mRNA. /FEA=mRNA /GEN=FLJ11196 /PROD=hypothetical protein FLJ11196 /DB_XREF=gi:8922933 /UG=Hs.6166 hypothetical protein FLJ11196 /FL=gb:NM_018357.1 NM_018357 La ribonucleoprotein domain family, member 6 LARP6 55323 NM_001286679 /// NM_018357 /// NM_197958 0006396 // RNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation -39.72 62.44 -3.60 0.01 0.02 -4.48
214845_s_at 214845_s_at AF257659 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF257659.1 /DEF=Homo sapiens crocalbin-like protein mRNA, partial cds. /FEA=mRNA /PROD=crocalbin-like protein /DB_XREF=gi:8515717 /UG=Hs.302073 Homo sapiens crocalbin-like protein mRNA, partial cds AF257659 calumenin CALU 813 NM_001130674 /// NM_001199671 /// NM_001199672 /// NM_001199673 /// NM_001199674 /// NM_001219 /// NR_074086 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 97.22 215.11 3.60 0.01 0.02 -4.48
212137_at 212137_at AV746402 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV746402 /FEA=EST /DB_XREF=gi:10865849 /DB_XREF=est:AV746402 /CLONE=NPAAMH12 /UG=Hs.75874 pregnancy-associated plasma protein A AV746402 La ribonucleoprotein domain family, member 1 LARP1 23367 NM_015315 /// NM_033551 /// XM_005268404 /// XM_005268406 /// XM_005268407 /// XM_005268408 /// XM_006714775 /// XM_006714776 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0016239 // positive regulation of macroautophagy // inferred from mutant phenotype /// 0031929 // TOR signaling // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031931 // TORC1 complex // inferred from direct assay 0000339 // RNA cap binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction /// 0008494 // translation activator activity // inferred from mutant phenotype /// 0031369 // translation initiation factor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay 122.05 594.33 3.60 0.01 0.02 -4.48
219065_s_at 219065_s_at NM_015955 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015955.1 /DEF=Homo sapiens CGI-27 protein (LOC51072), mRNA. /FEA=mRNA /GEN=LOC51072 /PROD=CGI-27 protein /DB_XREF=gi:7705719 /UG=Hs.20814 CGI-27 protein /FL=gb:AF132961.1 gb:NM_015955.1 NM_015955 dpy-30 homolog (C. elegans) /// mediator of cell motility 1 DPY30 /// MEMO1 51072 /// 84661 NM_001137602 /// NM_015955 /// NM_032574 /// XM_005264351 /// XM_005264352 /// XM_005264612 /// XM_006712028 /// XM_006712117 /// XM_006712118 /// XM_006712119 /// XR_244937 /// XR_426982 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0051568 // histone H3-K4 methylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0035097 // histone methyltransferase complex // inferred from direct assay /// 0048188 // Set1C/COMPASS complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 51.42 231.04 3.60 0.01 0.02 -4.48
208649_s_at 208649_s_at AF100752 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF100752.1 /DEF=Homo sapiens transitional endoplasmic reticulum ATPase mRNA, complete cds. /FEA=mRNA /PROD=transitional endoplasmic reticulum ATPase /DB_XREF=gi:5410289 /UG=Hs.106357 valosin-containing protein /FL=gb:AF100752.1 gb:NM_007126.2 AF100752 valosin containing protein VCP 7415 NM_007126 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006281 // DNA repair // non-traceable author statement /// 0006302 // double-strand break repair // inferred from direct assay /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from sequence or structural similarity /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // non-traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // inferred from mutant phenotype /// 0019985 // translesion synthesis // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0030970 // retrograde protein transport, ER to cytosol // inferred from direct assay /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0045184 // establishment of protein localization // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0070842 // aggresome assembly // inferred from electronic annotation /// 1903006 // positive regulation of protein K63-linked deubiquitination // inferred from direct assay /// 1903007 // positive regulation of Lys63-specific deubiquitinase activity // inferred from direct assay 0000502 // proteasome complex // inferred from direct assay /// 0000836 // Hrd1p ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0035861 // site of double-strand break // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0031593 // polyubiquitin binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from electronic annotation /// 0035800 // deubiquitinase activator activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043531 // ADP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 1990381 // ubiquitin-specific protease binding // inferred from physical interaction 155.60 930.98 3.60 0.01 0.02 -4.48
212986_s_at 212986_s_at BF112255 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF112255 /FEA=EST /DB_XREF=gi:10941945 /DB_XREF=est:7l42g09.x1 /CLONE=IMAGE:3524176 /UG=Hs.57553 tousled-like kinase 2 BF112255 tousled-like kinase 2 TLK2 11011 NM_001112707 /// NM_001284333 /// NM_001284363 /// NM_006852 /// XM_005256969 /// XM_005256970 /// XM_005256971 /// XM_005256973 /// XM_005256974 /// XM_005256975 /// XM_006721647 /// XM_006721648 /// XM_006721649 0001672 // regulation of chromatin assembly or disassembly // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0010507 // negative regulation of autophagy // non-traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0071480 // cellular response to gamma radiation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -35.83 148.86 -3.60 0.01 0.02 -4.48
221778_at 221778_at BE217882 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE217882 /FEA=EST /DB_XREF=gi:8905200 /DB_XREF=est:hv31b02.x1 /CLONE=IMAGE:3174987 /UG=Hs.222707 KIAA1718 protein BE217882 lysine (K)-specific demethylase 7A KDM7A 80853 NM_030647 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030901 // midbrain development // inferred from sequence or structural similarity /// 0033169 // histone H3-K9 demethylation // inferred from direct assay /// 0035574 // histone H4-K20 demethylation // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070544 // histone H3-K36 demethylation // inferred from direct assay /// 0071557 // histone H3-K27 demethylation // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0005506 // iron ion binding // inferred from direct assay /// 0005506 // iron ion binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from direct assay /// 0032454 // histone demethylase activity (H3-K9 specific) // inferred from direct assay /// 0035064 // methylated histone binding // inferred from direct assay /// 0035575 // histone demethylase activity (H4-K20 specific) // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation /// 0051864 // histone demethylase activity (H3-K36 specific) // inferred from direct assay /// 0071558 // histone demethylase activity (H3-K27 specific) // inferred from direct assay -64.22 74.94 -3.60 0.01 0.02 -4.48
204461_x_at 204461_x_at NM_002853 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002853.1 /DEF=Homo sapiens RAD1 (S. pombe) homolog (RAD1), mRNA. /FEA=mRNA /GEN=RAD1 /PROD=RAD1 (S. pombe) homolog /DB_XREF=gi:4506384 /UG=Hs.7179 RAD1 (S. pombe) homolog /FL=gb:AF058392.1 gb:AF073524.1 gb:AF074717.1 gb:AF011905.1 gb:AF084512.1 gb:AF030933.1 gb:AF076841.1 gb:NM_002853.1 NM_002853 RAD1 homolog (S. pombe) RAD1 5810 NM_001033673 /// NM_002853 /// NM_133282 /// NM_133377 /// NR_026591 0000075 // cell cycle checkpoint // non-traceable author statement /// 0000077 // DNA damage checkpoint // inferred from mutant phenotype /// 0000738 // DNA catabolic process, exonucleolytic // inferred from electronic annotation /// 0006260 // DNA replication // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // traceable author statement /// 0007128 // meiotic prophase I // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0071479 // cellular response to ionizing radiation // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003684 // damaged DNA binding // non-traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008408 // 3'-5' exonuclease activity // inferred from direct assay /// 0008853 // exodeoxyribonuclease III activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 33.07 66.84 3.60 0.01 0.02 -4.48
201470_at 201470_at NM_004832 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004832.1 /DEF=Homo sapiens glutathione-S-transferase like; glutathione transferase omega (GSTTLp28), mRNA. /FEA=mRNA /GEN=GSTTLp28 /PROD=glutathione-S-transferase like /DB_XREF=gi:4758483 /UG=Hs.11465 glutathione-S-transferase like; glutathione transferase omega /FL=gb:BC000127.1 gb:U90313.1 gb:NM_004832.1 gb:AF212303.1 NM_004832 glutathione S-transferase omega 1 GSTO1 9446 NM_001191002 /// NM_001191003 /// NM_004832 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0014810 // positive regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion // inferred by curator /// 0019852 // L-ascorbic acid metabolic process // inferred from direct assay /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0071243 // cellular response to arsenic-containing substance // inferred from direct assay /// 1901687 // glutathione derivative biosynthetic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0045174 // glutathione dehydrogenase (ascorbate) activity // inferred from direct assay /// 0050610 // methylarsonate reductase activity // inferred from electronic annotation -156.88 808.04 -3.60 0.01 0.02 -4.48
212039_x_at 212039_x_at BG339228 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG339228 /FEA=EST /DB_XREF=gi:13145666 /DB_XREF=est:602437093F1 /CLONE=IMAGE:4555102 /UG=Hs.119598 ribosomal protein L3 BG339228 RNA, U86 small nucleolar /// ribosomal protein L3 /// small nucleolar RNA, C/D box 83B RNU86 /// RPL3 /// SNORD83B 6122 /// 116936 /// 116938 NM_000967 /// NM_001033853 /// NR_000026 /// NR_000028 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -1090.83 4294.76 -3.60 0.01 0.02 -4.48
215723_s_at 215723_s_at AJ276230 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ276230.1 /DEF=Homo sapiens mRNA for partial phospholipase D1, splice variant PLD1ab2. /FEA=mRNA /GEN=PLD1 /PROD=phospholipase D1 /DB_XREF=gi:7161182 /UG=Hs.82587 phospholipase D1, phophatidylcholine-specific AJ276230 phospholipase D1, phosphatidylcholine-specific PLD1 5337 NM_001130081 /// NM_002662 /// XM_005247533 /// XM_005247534 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006654 // phosphatidic acid biosynthetic process // traceable author statement /// 0006655 // phosphatidylglycerol biosynthetic process // traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0070290 // N-acylphosphatidylethanolamine-specific phospholipase D activity // inferred from electronic annotation -45.87 73.36 -3.60 0.01 0.02 -4.48
208159_x_at 208159_x_at NM_004399 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004399.1 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 11 (S.cerevisiae CHL1-like helicase) (DDX11), transcript variant 2, mRNA. /FEA=mRNA /GEN=DDX11 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 11 /DB_XREF=gi:4758135 /UG=Hs.27424 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 11 (S.cerevisiae CHL1-like helicase) /FL=gb:NM_004399.1 NM_004399 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 DDX11 1663 NM_001257144 /// NM_001257145 /// NM_004399 /// NM_030653 /// NM_030655 /// NM_152438 /// XM_005253331 /// XM_005253333 /// XM_006719041 /// XM_006719042 /// XM_006719043 /// XM_006719044 /// XM_006719045 /// XM_006719046 /// XM_006719047 /// XM_006719048 /// XM_006719049 /// XM_006719050 /// XM_006719051 /// XM_006719052 /// XM_006719053 /// XR_429031 0000070 // mitotic sister chromatid segregation // traceable author statement /// 0000084 // mitotic S phase // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0000922 // spindle pole // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0030496 // midbody // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 71.53 108.51 3.59 0.01 0.02 -4.48
209339_at 209339_at U76248 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U76248.1 /DEF=Human hSIAH2 mRNA, complete cds. /FEA=mRNA /PROD=hSIAH2 /DB_XREF=gi:2673967 /UG=Hs.20191 seven in absentia (Drosophila) homolog 2 /FL=gb:U76248.1 gb:NM_005067.1 U76248 siah E3 ubiquitin protein ligase 2 SIAH2 6478 NM_005067 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031396 // regulation of protein ubiquitination // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0044257 // cellular protein catabolic process // inferred from genetic interaction /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from genetic interaction /// 2001141 // regulation of RNA biosynthetic process // traceable author statement /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0003714 // transcription corepressor activity // traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031624 // ubiquitin conjugating enzyme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -39.27 107.04 -3.59 0.01 0.02 -4.48
202184_s_at 202184_s_at NM_018230 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018230.1 /DEF=Homo sapiens hypothetical protein FLJ10814 (FLJ10814), mRNA. /FEA=mRNA /GEN=FLJ10814 /PROD=hypothetical protein FLJ10814 /DB_XREF=gi:8922689 /UG=Hs.12457 hypothetical protein FLJ10814 /FL=gb:NM_018230.1 NM_018230 nucleoporin 133kDa NUP133 55746 NM_018230 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006999 // nuclear pore organization // inferred from mutant phenotype /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048339 // paraxial mesoderm development // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from direct assay /// 0000940 // condensed chromosome outer kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031080 // nuclear pore outer ring // inferred from direct assay /// 0031080 // nuclear pore outer ring // non-traceable author statement 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 45.35 123.25 3.59 0.01 0.02 -4.48
201762_s_at 201762_s_at NM_002818 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002818.1 /DEF=Homo sapiens proteasome (prosome, macropain) activator subunit 2 (PA28 beta) (PSME2), mRNA. /FEA=mRNA /GEN=PSME2 /PROD=proteasome (prosome, macropain) activatorsubunit 2 (PA28 beta) /DB_XREF=gi:4506236 /UG=Hs.179774 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) /FL=gb:D45248.1 gb:BC004368.1 gb:NM_002818.1 NM_002818 microRNA 7703 /// proteasome (prosome, macropain) activator subunit 2 (PA28 beta) MIR7703 /// PSME2 5721 /// 102465801 NM_002818 /// NR_106990 /// XM_006720212 /// XM_006720213 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0008537 // proteasome activator complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay -81.25 284.52 -3.59 0.01 0.02 -4.48
218146_at 218146_at NM_018446 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018446.1 /DEF=Homo sapiens AD-017 protein (LOC55830), mRNA. /FEA=mRNA /GEN=LOC55830 /PROD=AD-017 protein /DB_XREF=gi:8923854 /UG=Hs.283737 AD-017 protein /FL=gb:BC001418.1 gb:AF157318.1 gb:NM_018446.1 NM_018446 glycosyltransferase 8 domain containing 1 GLT8D1 55830 NM_001010983 /// NM_001278280 /// NM_001278281 /// NM_018446 /// NM_152932 /// XM_006713260 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 49.40 173.55 3.59 0.01 0.02 -4.48
200943_at 200943_at NM_004965 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004965.1 /DEF=Homo sapiens high-mobility group (nonhistone chromosomal) protein 14 (HMG14), mRNA. /FEA=mRNA /GEN=HMG14 /PROD=high-mobility group (nonhistone chromosomal)protein 14 /DB_XREF=gi:4826757 /UG=Hs.251064 high-mobility group (nonhistone chromosomal) protein 14 /FL=gb:BC000075.1 gb:J02621.1 gb:NM_004965.1 NM_004965 high mobility group nucleosome binding domain 1 HMGN1 3150 NM_004965 0000720 // pyrimidine dimer repair by nucleotide-excision repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from electronic annotation /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0010224 // response to UV-B // inferred from electronic annotation /// 0010225 // response to UV-C // inferred from electronic annotation /// 0032786 // positive regulation of DNA-templated transcription, elongation // traceable author statement /// 0040034 // regulation of development, heterochronic // inferred from electronic annotation /// 0048597 // post-embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from electronic annotation 293.62 663.19 3.59 0.01 0.02 -4.49
200832_s_at 200832_s_at AB032261 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB032261.1 /DEF=Homo sapiens Scd mRNA for stearoyl-CoA desaturase, complete cds. /FEA=mRNA /GEN=Scd /PROD=stearoyl-CoA desaturase /DB_XREF=gi:7415720 /UG=Hs.119597 stearoyl-CoA desaturase (delta-9-desaturase) /FL=gb:AF097514.1 gb:NM_005063.1 gb:AB032261.1 AB032261 stearoyl-CoA desaturase (delta-9-desaturase) SCD 6319 NM_005063 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation 86.78 208.96 3.59 0.01 0.02 -4.49
218121_at 218121_at NM_002134 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002134.2 /DEF=Homo sapiens heme oxygenase (decycling) 2 (HMOX2), mRNA. /FEA=mRNA /GEN=HMOX2 /PROD=heme oxygenase (decyclizing) 2 /DB_XREF=gi:8051607 /UG=Hs.284279 heme oxygenase (decycling) 2 /FL=gb:BC002396.1 gb:D21243.1 gb:NM_002134.2 NM_002134 heme oxygenase (decycling) 2 HMOX2 3163 NM_001127204 /// NM_001127205 /// NM_001127206 /// NM_001286267 /// NM_001286268 /// NM_001286269 /// NM_001286270 /// NM_001286271 /// NM_002134 0001666 // response to hypoxia // inferred from direct assay /// 0006778 // porphyrin-containing compound metabolic process // traceable author statement /// 0006788 // heme oxidation // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0042167 // heme catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004392 // heme oxygenase (decyclizing) activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 47.58 72.39 3.58 0.01 0.02 -4.49
209484_s_at 209484_s_at AF201941 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF201941.1 /DEF=Homo sapiens DC8 (DC8) mRNA, complete cds. /FEA=mRNA /GEN=DC8 /PROD=DC8 /DB_XREF=gi:9295185 /UG=Hs.24427 DKFZP566O1646 protein /FL=gb:AF255793.1 gb:AF201941.1 AF201941 NSL1, MIS12 kinetochore complex component NSL1 25936 NM_001042549 /// NM_015471 /// XM_006711267 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000444 // MIS12/MIND type complex // inferred from direct assay /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 60.70 187.75 3.58 0.01 0.02 -4.49
201406_at 201406_at NM_021029 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021029.1 /DEF=Homo sapiens ribosomal protein L44 (RPL44), mRNA. /FEA=mRNA /GEN=RPL44 /PROD=ribosomal protein L44 /DB_XREF=gi:10445222 /UG=Hs.178391 ribosomal protein L44 /FL=gb:NM_021029.1 gb:BC001781.1 NM_021029 ribosomal protein L36a /// RPL36A-HNRNPH2 readthrough RPL36A /// RPL36A-HNRNPH2 6173 /// 100529097 NM_001199972 /// NM_001199973 /// NM_001199974 /// NM_021029 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -545.70 2933.53 -3.58 0.01 0.02 -4.49
208839_s_at 208839_s_at AL136810 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136810.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434G0222 (from clone DKFZp434G0222); complete cds. /FEA=mRNA /GEN=DKFZp434G0222 /PROD=hypothetical protein /DB_XREF=gi:12053130 /UG=Hs.184786 TBP-interacting protein /FL=gb:AL136810.1 AL136810 cullin-associated and neddylation-dissociated 1 CAND1 55832 NM_018448 0010265 // SCF complex assembly // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay /// 0030154 // cell differentiation // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045899 // positive regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017025 // TBP-class protein binding // inferred from electronic annotation 47.17 100.04 3.58 0.01 0.02 -4.49
200088_x_at 200088_x_at AK026491 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026491.1 /DEF=Homo sapiens cDNA: FLJ22838 fis, clone KAIA4494, highly similar to HUML12A Human ribosomal protein L12 mRNA. /FEA=mRNA /DB_XREF=gi:10439364 /UG=Hs.182979 ribosomal protein L12 AK026491 neurobeachin-like 1 /// ribosomal protein L12 NBEAL1 /// RPL12 6136 /// 65065 NM_000976 /// NM_001099273 /// NM_001114132 /// NM_198945 /// NM_205543 /// XM_005246787 /// XM_005246788 /// XM_006712698 /// XM_006712699 /// XM_006712700 /// XM_006712701 /// XM_006712702 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -521.43 2873.86 -3.58 0.01 0.02 -4.49
214696_at 214696_at AF070569 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF070569.1 /DEF=Homo sapiens clone 24659 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3387938 /UG=Hs.29206 Homo sapiens clone 24659 mRNA sequence AF070569 microRNA 22 /// MIR22 host gene (non-protein coding) MIR22 /// MIR22HG 84981 /// 407004 NM_001001870 /// NM_032895 /// NR_028502 /// NR_028503 /// NR_028504 /// NR_028505 /// NR_029494 67.55 176.90 3.58 0.01 0.02 -4.49
221920_s_at 221920_s_at BE677761 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE677761 /FEA=EST /DB_XREF=gi:10038376 /DB_XREF=est:7f59h05.x1 /CLONE=IMAGE:3299001 /UG=Hs.300496 mitochondrial solute carrier BE677761 solute carrier family 25 (mitochondrial iron transporter), member 37 SLC25A37 51312 NM_016612 /// XM_005273526 /// XM_006716352 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0034755 // iron ion transmembrane transport // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048250 // mitochondrial iron ion transport // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005381 // iron ion transmembrane transporter activity // inferred from electronic annotation -33.60 33.35 -3.58 0.01 0.02 -4.49
208745_at 208745_at AA917672 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA917672 /FEA=EST /DB_XREF=gi:3057562 /DB_XREF=est:on46d09.s1 /CLONE=IMAGE:1559729 /UG=Hs.107476 ATP synthase, H+ transporting, mitochondrial F1F0, subunit g /FL=gb:AF070655.1 AA917672 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G ATP5L 10632 NM_006476 /// NR_033759 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator 39.73 66.44 3.57 0.01 0.02 -4.49
217856_at 217856_at AF182415 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF182415.1 /DEF=Homo sapiens MDS014 (MDS014) mRNA, complete cds. /FEA=mRNA /GEN=MDS014 /PROD=MDS014 /DB_XREF=gi:10197629 /UG=Hs.65648 RNA binding motif protein 8A /FL=gb:AF182415.1 gb:AF231511.1 gb:AF127761.1 gb:NM_005105.1 gb:AF161463.1 gb:AF198620.1 AF182415 RNA binding motif protein 8A RBM8A 9939 NM_005105 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003729 // mRNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 36.03 58.59 3.57 0.01 0.02 -4.49
213358_at 213358_at AB018345 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB018345.1 /DEF=Homo sapiens mRNA for KIAA0802 protein, partial cds. /FEA=mRNA /GEN=KIAA0802 /PROD=KIAA0802 protein /DB_XREF=gi:3882324 /UG=Hs.27657 KIAA0802 protein AB018345 microtubule crosslinking factor 1 MTCL1 23255 NM_015210 /// XM_005258098 /// XM_005258099 /// XM_006722318 /// XM_006722319 /// XM_006722320 0001578 // microtubule bundle formation // inferred from sequence or structural similarity /// 0010506 // regulation of autophagy // inferred from electronic annotation /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // inferred from sequence or structural similarity /// 0090314 // positive regulation of protein targeting to membrane // inferred from sequence or structural similarity /// 2000576 // positive regulation of microtubule motor activity // inferred from sequence or structural similarity 0000922 // spindle pole // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016327 // apicolateral plasma membrane // inferred from sequence or structural similarity /// 0016328 // lateral plasma membrane // inferred from sequence or structural similarity /// 0030496 // midbody // inferred from direct assay /// 0097427 // microtubule bundle // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay 39.33 95.06 3.57 0.01 0.02 -4.49
213687_s_at 213687_s_at BE968801 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE968801 /FEA=EST /DB_XREF=gi:10579506 /DB_XREF=est:601649806F1 /CLONE=IMAGE:3933816 /UG=Hs.179666 uncharacterized hypothalamus protein HSMNP1 BE968801 ribosomal protein L35a RPL35A 6165 NM_000996 /// XM_005269350 /// XM_005269351 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred from genetic interaction /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from genetic interaction /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -382.27 2036.56 -3.57 0.01 0.02 -4.49
222196_at 222196_at AK000470 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000470.1 /DEF=Homo sapiens cDNA FLJ20463 fis, clone KAT06143. /FEA=mRNA /DB_XREF=gi:7020580 /UG=Hs.120769 Homo sapiens cDNA FLJ20463 fis, clone KAT06143 AK000470 zinc finger protein 839 pseudogene LOC389906 389906 NR_034031 32.80 31.52 3.57 0.01 0.02 -4.49
203371_s_at 203371_s_at NM_002491 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002491.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) (NDUFB3), mRNA. /FEA=mRNA /GEN=NDUFB3 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 3 (12kD, B12) /DB_XREF=gi:4505360 /UG=Hs.109760 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) /FL=gb:AF047183.1 gb:NM_002491.1 NM_002491 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa NDUFB3 4709 NM_001257102 /// NM_002491 /// XM_006712544 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 56.25 328.15 3.57 0.01 0.02 -4.49
213349_at 213349_at AI934469 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI934469 /FEA=EST /DB_XREF=gi:5673429 /DB_XREF=est:wp58d01.x1 /CLONE=IMAGE:2465953 /UG=Hs.179507 KIAA0779 protein AI934469 transmembrane and coiled-coil domain family 1 TMCC1 23023 NM_001017395 /// NM_001128224 /// NM_015008 /// NR_033361 /// XM_006713542 /// XM_006713543 /// XM_006713544 /// XM_006713545 /// XM_006713546 /// XM_006713547 /// XM_006713548 /// XM_006713549 /// XM_006713550 /// XM_006713551 /// XM_006713552 /// XM_006713553 /// XM_006713554 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -44.83 108.81 -3.56 0.01 0.02 -4.49
203828_s_at 203828_s_at NM_004221 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004221.1 /DEF=Homo sapiens natural killer cell transcript 4 (NK4), mRNA. /FEA=mRNA /GEN=NK4 /PROD=natural killer cell transcript 4 /DB_XREF=gi:4758811 /UG=Hs.943 natural killer cell transcript 4 /FL=gb:M59807.1 gb:NM_004221.1 NM_004221 interleukin 32 IL32 9235 NM_001012631 /// NM_001012632 /// NM_001012633 /// NM_001012634 /// NM_001012635 /// NM_001012636 /// NM_001012718 /// NM_004221 /// XM_005255686 0006952 // defense response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -146.30 225.62 -3.56 0.01 0.02 -4.49
210275_s_at 210275_s_at AF062347 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF062347.1 /DEF=Homo sapiens zinc finger protein 216 splice variant 2 (ZNF216) mRNA, complete cds. /FEA=mRNA /GEN=ZNF216 /PROD=zinc finger protein 216 splice variant 2 /DB_XREF=gi:3643810 /UG=Hs.3776 zinc finger protein 216 /FL=gb:AF062347.1 AF062347 zinc finger, AN1-type domain 5 ZFAND5 7763 NM_001102420 /// NM_001102421 /// NM_001278243 /// NM_001278244 /// NM_001278245 /// NM_006007 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001944 // vasculature development // inferred from electronic annotation /// 0003016 // respiratory system process // inferred from electronic annotation /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0060324 // face development // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -120.13 931.69 -3.56 0.01 0.02 -4.49
213485_s_at 213485_s_at AK000002 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000002.1 /DEF=Homo sapiens mRNA for FLJ00002 protein, partial cds. /FEA=mRNA /GEN=FLJ00002 /PROD=FLJ00002 protein /DB_XREF=gi:7209304 /UG=Hs.55879 hypothetical protein MGC2487 AK000002 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 ABCC10 89845 NM_001198934 /// NM_033450 /// XM_005249470 /// XM_006715240 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 39.48 99.46 3.56 0.01 0.02 -4.49
217967_s_at 217967_s_at AF288391 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF288391.1 /DEF=Homo sapiens C1orf24 mRNA, complete cds. /FEA=mRNA /PROD=C1orf24 /DB_XREF=gi:12620191 /UG=Hs.48778 niban protein /FL=gb:AB050477.1 gb:NM_022083.1 gb:AF288391.1 AF288391 family with sequence similarity 129, member A FAM129A 116496 NM_052966 0001933 // negative regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0045727 // positive regulation of translation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -31.38 39.86 -3.56 0.01 0.02 -4.49
209188_x_at 209188_x_at BC002809 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002809.1 /DEF=Homo sapiens, down-regulator of transcription 1, TBP-binding (negative cofactor 2), clone MGC:4292, mRNA, complete cds. /FEA=mRNA /PROD=down-regulator of transcription 1, TBP-binding(negative cofactor 2) /DB_XREF=gi:12803924 /UG=Hs.16697 down-regulator of transcription 1, TBP-binding (negative cofactor 2) /FL=gb:BC002809.1 BC002809 down-regulator of transcription 1, TBP-binding (negative cofactor 2) DR1 1810 NM_001938 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // traceable author statement /// 0017025 // TBP-class protein binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -56.82 256.24 -3.56 0.01 0.02 -4.49
209974_s_at 209974_s_at AF047473 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF047473.1 /DEF=Homo sapiens testis mitotic checkpoint BUB3 (BUB3) mRNA, complete cds. /FEA=mRNA /GEN=BUB3 /PROD=testis mitotic checkpoint BUB3 /DB_XREF=gi:3378103 /UG=Hs.40323 BUB3 (budding uninhibited by benzimidazoles 3, yeast) homolog /FL=gb:AF047473.1 AF047473 BUB3 mitotic checkpoint protein BUB3 9184 NM_001007793 /// NM_004725 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051983 // regulation of chromosome segregation // inferred from electronic annotation /// 0071173 // spindle assembly checkpoint // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction 167.40 307.95 3.56 0.01 0.02 -4.49
200907_s_at 200907_s_at AU157932 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU157932 /FEA=EST /DB_XREF=gi:11019453 /DB_XREF=est:AU157932 /CLONE=PLACE1010217 /UG=Hs.194431 palladin /FL=gb:AF077041.1 gb:AF151909.1 gb:NM_016081.1 AU157932 palladin, cytoskeletal associated protein PALLD 23022 NM_001166108 /// NM_001166109 /// NM_001166110 /// NM_016081 /// XM_005262861 /// XM_005262862 /// XM_005262863 /// XM_005262864 /// XM_005262865 /// XM_005262866 0007010 // cytoskeleton organization // non-traceable author statement 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0051371 // muscle alpha-actinin binding // traceable author statement 51.45 177.50 3.56 0.01 0.02 -4.49
214030_at 214030_at BE501352 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE501352 /FEA=EST /DB_XREF=gi:9703760 /DB_XREF=est:7a41e05.x1 /CLONE=IMAGE:3221312 /UG=Hs.23294 ESTs, Weakly similar to T15138 hypothetical protein T28F2.4 - Caenorhabditis elegans C.elegans BE501352 beta-gamma crystallin domain containing 3 CRYBG3 131544 NM_153605 /// XM_005247117 /// XR_241467 50.77 91.44 3.55 0.01 0.02 -4.49
202757_at 202757_at NM_015456 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015456.1 /DEF=Homo sapiens DKFZP586B0519 protein (DKFZP586B0519), mRNA. /FEA=mRNA /GEN=DKFZP586B0519 /PROD=DKFZP586B0519 protein /DB_XREF=gi:7661663 /UG=Hs.27633 DKFZP586B0519 protein /FL=gb:AL050280.1 gb:NM_015456.1 NM_015456 negative elongation factor complex member B NELFB 25920 NM_015456 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0032021 // NELF complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 35.07 157.54 3.55 0.01 0.02 -4.49
218103_at 218103_at NM_017647 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017647.1 /DEF=Homo sapiens hypothetical protein FLJ20062 (FLJ20062), mRNA. /FEA=mRNA /GEN=FLJ20062 /PROD=hypothetical protein FLJ20062 /DB_XREF=gi:8923066 /UG=Hs.257486 hypothetical protein FLJ20062 /FL=gb:BC000131.1 gb:NM_017647.1 NM_017647 FtsJ homolog 3 (E. coli) FTSJ3 117246 NM_017647 0000453 // enzyme-directed rRNA 2'-O-methylation // inferred from electronic annotation /// 0001510 // RNA methylation // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0030688 // preribosome, small subunit precursor // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 50.20 139.05 3.55 0.01 0.02 -4.49
200985_s_at 200985_s_at NM_000611 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000611.1 /DEF=Homo sapiens CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344) (CD59), mRNA. /FEA=mRNA /GEN=CD59 /PROD=CD59 antigen p18-20 (antigen identified bymonoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344) /DB_XREF=gi:10835164 /UG=Hs.119663 CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344) /FL=gb:NM_000611.1 gb:M34671.1 NM_000611 CD59 molecule, complement regulatory protein CD59 966 NM_000611 /// NM_001127223 /// NM_001127225 /// NM_001127226 /// NM_001127227 /// NM_203329 /// NM_203330 /// NM_203331 0001775 // cell activation // not recorded /// 0001971 // negative regulation of activation of membrane attack complex // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030449 // regulation of complement activation // traceable author statement /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0031362 // anchored component of external side of plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043218 // compact myelin // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001848 // complement binding // not recorded /// 0005515 // protein binding // inferred from physical interaction 173.05 1517.25 3.55 0.01 0.02 -4.49
202664_at 202664_at AW058622 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW058622 /FEA=EST /DB_XREF=gi:5934261 /DB_XREF=est:wy59c01.x1 /CLONE=IMAGE:2552832 /UG=Hs.24143 Wiskott-Aldrich syndrome protein interacting protein /FL=gb:NM_003387.2 AW058622 WAS/WASL interacting protein family, member 1 WIPF1 7456 NM_001077269 /// NM_003387 /// XM_006712727 0006461 // protein complex assembly // traceable author statement /// 0008154 // actin polymerization or depolymerization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046827 // positive regulation of protein export from nucleus // inferred from electronic annotation /// 0051707 // response to other organism // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005522 // profilin binding // traceable author statement 34.03 35.41 3.55 0.01 0.02 -4.49
221802_s_at 221802_s_at AU157109 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU157109 /FEA=EST /DB_XREF=gi:11018630 /DB_XREF=est:AU157109 /CLONE=PLACE1006159 /UG=Hs.23740 KIAA1598 protein AU157109 KIAA1598 KIAA1598 57698 NM_001127211 /// NM_001258298 /// NM_001258299 /// NM_001258300 /// NM_018330 /// XM_005270002 /// XM_006717931 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation 34.15 52.65 3.55 0.01 0.02 -4.49
202241_at 202241_at NM_025195 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025195.1 /DEF=Homo sapiens phosphoprotein regulated by mitogenic pathways (C8FW), mRNA. /FEA=mRNA /GEN=C8FW /PROD=G-protein-coupled receptor induced protein /DB_XREF=gi:13399327 /UG=Hs.7837 phosphoprotein regulated by mitogenic pathways /FL=gb:AF205437.1 gb:NM_025195.1 NM_025195 tribbles pseudokinase 1 TRIB1 10221 NM_001282985 /// NM_025195 /// XM_006716496 /// XM_006716497 /// XR_428373 0006468 // protein phosphorylation // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0014912 // negative regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0031665 // negative regulation of lipopolysaccharide-mediated signaling pathway // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from sequence or structural similarity /// 0043405 // regulation of MAP kinase activity // inferred from direct assay /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0004672 // protein kinase activity // traceable author statement /// 0004860 // protein kinase inhibitor activity // inferred from mutant phenotype /// 0005524 // ATP binding // traceable author statement /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from sequence or structural similarity /// 0055106 // ubiquitin-protein transferase regulator activity // inferred from sequence or structural similarity -127.68 290.06 -3.55 0.01 0.02 -4.49
217776_at 217776_at AF167438 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF167438.1 /DEF=Homo sapiens androgen-regulated short-chain dehydrogenasereductase 1 (ARSDR1) mRNA, complete cds. /FEA=mRNA /GEN=ARSDR1 /PROD=androgen-regulated short-chaindehydrogenasereductase 1 /DB_XREF=gi:9622123 /UG=Hs.179817 CGI-82 protein /FL=gb:BC000112.1 gb:AF151840.1 gb:NM_016026.1 gb:AF167438.1 AF167438 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) RDH11 51109 NM_001252650 /// NM_016026 0001523 // retinoid metabolic process // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016062 // adaptation of rhodopsin mediated signaling // inferred from electronic annotation /// 0042572 // retinol metabolic process // inferred from sequence or structural similarity /// 0042574 // retinal metabolic process // inferred from direct assay /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005622 // intracellular // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0052650 // NADP-retinol dehydrogenase activity // inferred from direct assay 107.65 180.28 3.55 0.01 0.02 -4.49
210532_s_at 210532_s_at AF116639 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF116639.1 /DEF=Homo sapiens PRO1574 mRNA, complete cds. /FEA=mRNA /PROD=PRO1574 /DB_XREF=gi:7959779 /UG=Hs.109052 chromosome 14 open reading frame 2 /FL=gb:AF116639.1 AF116639 chromosome 14 open reading frame 2 C14orf2 9556 NM_001127393 /// NM_004894 0005739 // mitochondrion // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 180.07 1020.44 3.54 0.01 0.02 -4.49
201933_at 201933_at NM_002768 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002768.1 /DEF=Homo sapiens procollagen (type III) N-endopeptidase (PCOLN3), mRNA. /FEA=mRNA /GEN=PCOLN3 /PROD=procollagen (type III) N-endopeptidase /DB_XREF=gi:4506138 /UG=Hs.183138 procollagen (type III) N-endopeptidase /FL=gb:U58048.1 gb:NM_002768.1 gb:AF281063.1 NM_002768 charged multivesicular body protein 1A CHMP1A 5119 NM_001083314 /// NM_002768 /// NR_046418 0000910 // cytokinesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0016458 // gene silencing // inferred from direct assay /// 0045014 // negative regulation of transcription by glucose // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008237 // metallopeptidase activity // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 39.43 106.94 3.54 0.01 0.02 -4.49
211950_at 211950_at AB007931 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB007931.1 /DEF=Homo sapiens mRNA for KIAA0462 protein, partial cds. /FEA=mRNA /GEN=KIAA0462 /PROD=KIAA0462 protein /DB_XREF=gi:3413885 /UG=Hs.297641 KIAA0462 protein AB007931 ubiquitin protein ligase E3 component n-recognin 4 UBR4 23352 NM_020765 /// XM_005245802 /// XM_006710503 /// XM_006710504 /// XM_006710505 /// XM_006710506 /// XM_006710507 /// XM_006710508 /// XM_006710509 /// XM_006710510 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -161.45 307.50 -3.54 0.01 0.02 -4.49
210097_s_at 210097_s_at AF130102 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF130102.1 /DEF=Homo sapiens clone FLB2205 PRO0522 mRNA, complete cds. /FEA=mRNA /PROD=PRO0522 /DB_XREF=gi:11493507 /UG=Hs.106346 retinoic acid repressible protein /FL=gb:AF130102.1 AF130102 nucleolar protein 7, 27kDa NOL7 51406 NM_016167 /// XM_005249173 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay -53.67 372.91 -3.54 0.01 0.02 -4.49
45828_at 45828_at AI768100 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI768100:wg81b02.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2371467 /clone_end=3' /gb=AI768100 /gi=5234609 /ug=Hs.6045 /len=573 AI768100 ATP5S-like ATP5SL 55101 NM_001167867 /// NM_001167868 /// NM_001167869 /// NM_001167870 /// NM_001167871 /// NM_018035 /// NR_030765 /// XM_006723258 0005739 // mitochondrion // inferred from electronic annotation 47.63 216.84 3.54 0.01 0.02 -4.49
202616_s_at 202616_s_at AI631140 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI631140 /FEA=EST /DB_XREF=gi:4682470 /DB_XREF=est:ts93b07.x1 /CLONE=IMAGE:2238805 /UG=Hs.3239 methyl CpG binding protein 2 (Rett syndrome) /FL=gb:AF158180.1 gb:NM_004992.2 gb:L37298.1 AI631140 methyl CpG binding protein 2 MECP2 4204 NM_001110792 /// NM_004992 /// XM_005274681 /// XM_005274682 /// XM_005274683 /// XM_006724819 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001662 // behavioral fear response // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001964 // startle response // inferred from electronic annotation /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0006020 // inositol metabolic process // inferred from electronic annotation /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0006342 // chromatin silencing // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006576 // cellular biogenic amine metabolic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007616 // long-term memory // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0009405 // pathogenesis // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0016571 // histone methylation // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation /// 0019230 // proprioception // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021591 // ventricular system development // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0031061 // negative regulation of histone methylation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032048 // cardiolipin metabolic process // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // inferred from electronic annotation /// 0035176 // social behavior // inferred from electronic annotation /// 0040029 // regulation of gene expression, epigenetic // inferred from electronic annotation /// 0042551 // neuron maturation // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0050432 // catecholamine secretion // inferred from electronic annotation /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051965 // positive regulation of synapse assembly // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation 0000792 // heterochromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008327 // methyl-CpG binding // inferred from electronic annotation /// 0010385 // double-stranded methylated DNA binding // inferred from mutant phenotype /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0035197 // siRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction 33.05 38.85 3.54 0.01 0.02 -4.49
214773_x_at 214773_x_at AI983505 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI983505 /FEA=EST /DB_XREF=gi:5810724 /DB_XREF=est:wt49h12.x1 /CLONE=IMAGE:2510855 /UG=Hs.137576 ribosomal protein L34 pseudogene 1 AI983505 TOR signaling pathway regulator TIPRL 261726 NM_001031800 /// NM_152902 0000077 // DNA damage checkpoint // inferred from mutant phenotype /// 0034048 // negative regulation of protein phosphatase type 2A activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 42.85 88.60 3.54 0.01 0.02 -4.49
214941_s_at 214941_s_at AA675900 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA675900 /FEA=EST /DB_XREF=gi:2775247 /DB_XREF=est:g02504r /CLONE=g02504 /UG=Hs.119325 Huntingtin-interacting protein A AA675900 PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) PRPF40A 55660 NM_017892 /// XM_005246676 /// XM_005246677 /// XM_005246678 /// XM_005246679 0006397 // mRNA processing // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070064 // proline-rich region binding // inferred from electronic annotation -42.45 228.10 -3.54 0.01 0.02 -4.49
202347_s_at 202347_s_at AB022435 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB022435.1 /DEF=Homo sapiens LIG mRNA for E2 ubiquitin-conjugating enzyme, complete cds. /FEA=mRNA /GEN=LIG /PROD=E2 ubiquitin-conjugating enzyme /DB_XREF=gi:4996607 /UG=Hs.155485 huntingtin interacting protein 2 /FL=gb:NM_005339.2 gb:U58522.1 gb:AB022435.1 AB022435 ubiquitin-conjugating enzyme E2K UBE2K 3093 NM_001111112 /// NM_001111113 /// NM_005339 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0032434 // regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from direct assay -46.57 251.59 -3.54 0.01 0.02 -4.49
200735_x_at 200735_x_at NM_005594 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005594.1 /DEF=Homo sapiens nascent-polypeptide-associated complex alpha polypeptide (NACA), mRNA. /FEA=mRNA /GEN=NACA /PROD=nascent-polypeptide-associated complex alphapolypeptide /DB_XREF=gi:5031930 /UG=Hs.32916 nascent-polypeptide-associated complex alpha polypeptide /FL=gb:AF054187.1 gb:NM_005594.1 NM_005594 nascent polypeptide-associated complex alpha subunit NACA 4666 NM_001113201 /// NM_001113202 /// NM_001113203 /// NM_005594 /// NR_045277 /// XM_006719412 /// XM_006719413 /// XM_006719414 /// XM_006719415 /// XM_006719416 /// XM_006719417 /// XM_006719418 /// XM_006719419 /// XM_006719420 /// XM_006719421 0003231 // cardiac ventricle development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0010664 // negative regulation of striated muscle cell apoptotic process // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043403 // skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0048633 // positive regulation of skeletal muscle tissue growth // inferred from sequence or structural similarity /// 0048742 // regulation of skeletal muscle fiber development // inferred from sequence or structural similarity /// 0061384 // heart trabecula morphogenesis // inferred from sequence or structural similarity /// 1901227 // negative regulation of transcription from RNA polymerase II promoter involved in heart development // inferred from sequence or structural similarity /// 1901228 // positive regulation of transcription from RNA polymerase II promoter involved in heart development // inferred from sequence or structural similarity /// 2000138 // positive regulation of cell proliferation involved in heart morphogenesis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005854 // nascent polypeptide-associated complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0017025 // TBP-class protein binding // inferred from sequence or structural similarity -265.40 2256.10 -3.53 0.01 0.02 -4.49
212176_at 212176_at AA902326 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA902326 /FEA=EST /DB_XREF=gi:3037233 /DB_XREF=est:ok92b01.s1 /CLONE=IMAGE:1521385 /UG=Hs.18368 DKFZP564B0769 protein AA902326 PNN-interacting serine/arginine-rich protein PNISR 25957 NM_015491 /// NM_032870 /// XM_005266912 /// XM_005266913 /// XM_005266914 /// XM_005266915 /// XM_005266916 /// XM_005266917 /// XM_006715450 /// XM_006715451 /// XM_006715452 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay 50.17 67.24 3.53 0.01 0.02 -4.49
217736_s_at 217736_s_at NM_014413 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014413.2 /DEF=Homo sapiens heme-regulated initiation factor 2-alpha kinase (HRI), mRNA. /FEA=mRNA /GEN=HRI /PROD=heme-regulated initiation factor 2-alpha kinase /DB_XREF=gi:11125767 /UG=Hs.258730 heme-regulated initiation factor 2-alpha kinase /FL=gb:NM_014413.2 gb:AL136563.1 gb:AF147094.1 gb:AF255050.1 gb:AF116634.1 gb:AF183414.1 NM_014413 eukaryotic translation initiation factor 2-alpha kinase 1 EIF2AK1 27102 NM_001134335 /// NM_014413 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009605 // response to external stimulus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0010999 // regulation of eIF2 alpha phosphorylation by heme // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0045993 // negative regulation of translational initiation by iron // non-traceable author statement /// 0046501 // protoporphyrinogen IX metabolic process // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046984 // regulation of hemoglobin biosynthetic process // inferred from electronic annotation /// 0046986 // negative regulation of hemoglobin biosynthetic process // inferred from sequence or structural similarity /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 107.27 433.46 3.53 0.01 0.02 -4.49
201118_at 201118_at NM_002631 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002631.1 /DEF=Homo sapiens phosphogluconate dehydrogenase (PGD), mRNA. /FEA=mRNA /GEN=PGD /PROD=phosphogluconate dehydrogenase /DB_XREF=gi:4505758 /UG=Hs.75888 phosphogluconate dehydrogenase /FL=gb:BC000368.1 gb:NM_002631.1 gb:U30255.1 NM_002631 phosphogluconate dehydrogenase PGD 5226 NM_002631 0005975 // carbohydrate metabolic process // traceable author statement /// 0006098 // pentose-phosphate shunt // inferred from sequence or structural similarity /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from direct assay /// 0019322 // pentose biosynthetic process // inferred from electronic annotation /// 0019521 // D-gluconate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // not recorded /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation -94.33 404.11 -3.53 0.01 0.02 -4.49
209268_at 209268_at AF165513 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF165513.1 /DEF=Homo sapiens vacuolar protein sorting 45 isoform (VPS45) mRNA, complete cds. /FEA=mRNA /GEN=VPS45 /PROD=vacuolar protein sorting 45 isoform /DB_XREF=gi:9294732 /UG=Hs.6650 vacuolar protein sorting 45B (yeast homolog) /FL=gb:NM_007259.1 gb:AF165513.1 AF165513 vacuolar protein sorting 45 homolog (S. cerevisiae) VPS45 11311 NM_001279353 /// NM_001279354 /// NM_001279355 /// NM_007259 /// NR_103998 /// XM_006711142 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation 44.62 58.26 3.53 0.01 0.02 -4.49
218109_s_at 218109_s_at NM_022736 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022736.1 /DEF=Homo sapiens hypothetical protein FLJ14153 (FLJ14153), mRNA. /FEA=mRNA /GEN=FLJ14153 /PROD=hypothetical protein FLJ14153 /DB_XREF=gi:12232392 /UG=Hs.7503 hypothetical protein FLJ14153 /FL=gb:NM_022736.1 gb:AB014732.1 NM_022736 major facilitator superfamily domain containing 1 MFSD1 64747 NM_001167903 /// NM_001289406 /// NM_001289407 /// NM_022736 /// NR_110328 /// XM_006713730 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 78.22 210.26 3.53 0.01 0.02 -4.49
221036_s_at 221036_s_at NM_031301 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031301.1 /DEF=Homo sapiens hypothetical protein DKFZp564D0372 (DKFZP564D0372), mRNA. /FEA=mRNA /GEN=DKFZP564D0372 /PROD=hypothetical protein DKFZp564D0372 /DB_XREF=gi:13775223 /FL=gb:NM_031301.1 NM_031301 APH1B gamma secretase subunit APH1B 83464 NM_001145646 /// NM_031301 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0016485 // protein processing // inferred from direct assay /// 0031293 // membrane protein intracellular domain proteolysis // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0030133 // transport vesicle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from direct assay -32.25 104.47 -3.53 0.01 0.02 -4.49
217973_at 217973_at NM_016286 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016286.1 /DEF=Homo sapiens carbonyl reductase (LOC51181), mRNA. /FEA=mRNA /GEN=LOC51181 /PROD=carbonyl reductase /DB_XREF=gi:7705924 /UG=Hs.9857 carbonyl reductase /FL=gb:BC001470.1 gb:AF113123.1 gb:NM_016286.1 NM_016286 dicarbonyl/L-xylulose reductase DCXR 51181 NM_001195218 /// NM_016286 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005997 // xylulose metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // inferred from direct assay /// 0006739 // NADP metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042732 // D-xylose metabolic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005902 // microvillus // inferred from electronic annotation /// 0005903 // brush border // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016614 // oxidoreductase activity, acting on CH-OH group of donors // inferred from electronic annotation /// 0016655 // oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor // inferred from direct assay /// 0050038 // L-xylulose reductase (NADP+) activity // inferred from direct assay 41.05 138.12 3.53 0.01 0.02 -4.49
218187_s_at 218187_s_at NM_023080 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023080.1 /DEF=Homo sapiens hypothetical protein FLJ20989 (FLJ20989), mRNA. /FEA=mRNA /GEN=FLJ20989 /PROD=hypothetical protein FLJ20989 /DB_XREF=gi:12751496 /UG=Hs.169615 hypothetical protein FLJ20989 /FL=gb:NM_023080.1 NM_023080 chromosome 8 open reading frame 33 C8orf33 65265 NM_023080 35.95 75.05 3.53 0.01 0.02 -4.49
201770_at 201770_at NM_004596 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004596.1 /DEF=Homo sapiens small nuclear ribonucleoprotein polypeptide A (SNRPA), mRNA. /FEA=mRNA /GEN=SNRPA /PROD=small nuclear ribonucleoprotein polypeptide A /DB_XREF=gi:4759155 /UG=Hs.173255 small nuclear ribonucleoprotein polypeptide A /FL=gb:BC000405.1 gb:NM_004596.1 NM_004596 small nuclear ribonucleoprotein polypeptide A SNRPA 6626 NM_004596 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005685 // U1 snRNP // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017069 // snRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 89.67 229.61 3.53 0.01 0.02 -4.49
204587_at 204587_at NM_003951 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003951.2 /DEF=Homo sapiens solute carrier family 25 (mitochondrial carrier, brain), member 14 (SLC25A14), transcript variant long, nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=SLC25A14 /PROD=solute carrier family 25, member 14, isoformUCP5L /DB_XREF=gi:6006039 /UG=Hs.194686 solute carrier family 25 (mitochondrial carrier, brain), member 14 /FL=gb:AF155809.1 gb:AF155811.1 gb:NM_022810.1 gb:AF078544.1 gb:NM_003951.2 NM_003951 solute carrier family 25 (mitochondrial carrier, brain), member 14 SLC25A14 9016 NM_001282195 /// NM_001282196 /// NM_001282197 /// NM_001282198 /// NM_003951 /// NM_022810 /// NR_104107 /// XM_005262485 /// XM_005262488 /// XM_005262489 /// XM_006724786 /// XM_006724787 /// XM_006724788 /// XM_006724789 /// XR_244526 /// XR_430549 /// XR_430550 0006810 // transport // traceable author statement /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0009060 // aerobic respiration // traceable author statement 0005739 // mitochondrion // traceable author statement /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 36.43 58.79 3.53 0.01 0.02 -4.49
210646_x_at 210646_x_at BC001675 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001675.1 /DEF=Homo sapiens, ribosomal protein L13a, clone MGC:2546, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L13a /DB_XREF=gi:12804528 /UG=Hs.119122 ribosomal protein L13a /FL=gb:BC001675.1 gb:BC001836.1 BC001675 ribosomal protein L13a /// ribosomal protein L13a pseudogene 5 /// small nucleolar RNA, C/D box 32A /// small nucleolar RNA, C/D box 33 /// small nucleolar RNA, C/D box 34 /// small nucleolar RNA, C/D box 35A RPL13A /// RPL13AP5 /// SNORD32A /// SNORD33 /// SNORD34 /// SNORD35A 23521 /// 26816 /// 26817 /// 26818 /// 26819 /// 728658 NM_001270491 /// NM_012423 /// NR_000018 /// NR_000019 /// NR_000020 /// NR_000021 /// NR_026712 /// NR_073024 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071346 // cellular response to interferon-gamma // inferred from direct assay /// 1901194 // negative regulation of formation of translation preinitiation complex // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -1137.35 5445.03 -3.53 0.01 0.02 -4.49
200833_s_at 200833_s_at NM_015646 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015646.1 /DEF=Homo sapiens RAP1B, member of RAS oncogene family (RAP1B), mRNA. /FEA=mRNA /GEN=RAP1B /PROD=DKFZP586H0723 protein /DB_XREF=gi:7661677 /UG=Hs.156764 RAP1B, member of RAS oncogene family /FL=gb:BC000176.2 gb:NM_015646.1 NM_015646 RAP1B, member of RAS oncogene family RAP1B 5908 NM_001010942 /// NM_001251917 /// NM_001251918 /// NM_001251921 /// NM_001251922 /// NM_015646 0006112 // energy reserve metabolic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0032486 // Rap protein signal transduction // inferred from mutant phenotype /// 0032854 // positive regulation of Rap GTPase activity // inferred from electronic annotation /// 0038180 // nerve growth factor signaling pathway // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0061028 // establishment of endothelial barrier // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071320 // cellular response to cAMP // inferred from direct assay /// 1901888 // regulation of cell junction assembly // inferred from mutant phenotype /// 1990090 // cellular response to nerve growth factor stimulus // inferred from electronic annotation /// 2000114 // regulation of establishment of cell polarity // inferred from mutant phenotype /// 2001214 // positive regulation of vasculogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0032045 // guanyl-nucleotide exchange factor complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0017016 // Ras GTPase binding // inferred from electronic annotation /// 0017034 // Rap guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay -185.53 966.41 -3.53 0.01 0.02 -4.49
222275_at 222275_at AI039469 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI039469 /FEA=EST /DB_XREF=gi:3278663 /DB_XREF=est:ox41a08.s1 /CLONE=IMAGE:1658870 /UG=Hs.27362 ESTs AI039469 mitochondrial ribosomal protein S30 MRPS30 10884 NM_016640 0006412 // translation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 31.18 35.74 3.52 0.01 0.02 -4.49
208374_s_at 208374_s_at NM_006135 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006135.1 /DEF=Homo sapiens capping protein (actin filament) muscle Z-line, alpha 1 (CAPZA1), mRNA. /FEA=mRNA /GEN=CAPZA1 /PROD=F-actin capping protein alpha-1 subunit /DB_XREF=gi:5453596 /UG=Hs.184270 capping protein (actin filament) muscle Z-line, alpha 1 /FL=gb:U56637.1 gb:NM_006135.1 NM_006135 capping protein (actin filament) muscle Z-line, alpha 1 CAPZA1 829 NM_006135 0006461 // protein complex assembly // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0051693 // actin filament capping // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071203 // WASH complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 89.42 767.16 3.52 0.01 0.02 -4.49
217729_s_at 217729_s_at NM_001130 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001130.3 /DEF=Homo sapiens amino-terminal enhancer of split (AES), mRNA. /FEA=mRNA /GEN=AES /PROD=amino-terminal enhancer of split /DB_XREF=gi:6382065 /UG=Hs.244 amino-terminal enhancer of split /FL=gb:AF072902.1 gb:U04241.1 gb:NM_001130.3 NM_001130 amino-terminal enhancer of split AES 166 NM_001130 /// NM_198969 /// NM_198970 /// XM_006722664 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001501 // skeletal system development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0009887 // organ morphogenesis // traceable author statement /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0060761 // negative regulation of response to cytokine stimulus // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from direct assay /// 2000210 // positive regulation of anoikis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction 47.40 109.00 3.52 0.01 0.02 -4.49
202098_s_at 202098_s_at NM_001535 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001535.1 /DEF=Homo sapiens HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 1 (HRMT1L1), mRNA. /FEA=mRNA /GEN=HRMT1L1 /PROD=HMT1 (hnRNP methyltransferase, S.cerevisiae)-like 1 /DB_XREF=gi:4504494 /UG=Hs.235887 HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 1 /FL=gb:U80213.1 gb:NM_001535.1 NM_001535 protein arginine methyltransferase 2 PRMT2 3275 NM_001242864 /// NM_001242865 /// NM_001242866 /// NM_001286676 /// NM_001286677 /// NM_001286678 /// NM_001535 /// NM_206962 /// XM_005261111 /// XM_006723998 /// XM_006723999 /// XM_006724000 0006479 // protein methylation // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0016571 // histone methylation // inferred from direct assay /// 0016571 // histone methylation // inferred from sequence or structural similarity /// 0019919 // peptidyl-arginine methylation, to asymmetrical-dimethyl arginine // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032259 // methylation // inferred from electronic annotation /// 0034969 // histone arginine methylation // not recorded /// 0035246 // peptidyl-arginine N-methylation // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from genetic interaction /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048588 // developmental cell growth // inferred from sequence or structural similarity /// 0060765 // regulation of androgen receptor signaling pathway // inferred from direct assay /// 0097194 // execution phase of apoptosis // inferred from direct assay /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0035189 // Rb-E2F complex // inferred from sequence or structural similarity 0003713 // transcription coactivator activity // inferred from direct assay /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0008469 // histone-arginine N-methyltransferase activity // not recorded /// 0008469 // histone-arginine N-methyltransferase activity // inferred from sequence or structural similarity /// 0016274 // protein-arginine N-methyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from direct assay /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0033142 // progesterone receptor binding // inferred from physical interaction /// 0035242 // protein-arginine omega-N asymmetric methyltransferase activity // not recorded /// 0042054 // histone methyltransferase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042974 // retinoic acid receptor binding // inferred from physical interaction /// 0042975 // peroxisome proliferator activated receptor binding // inferred from physical interaction /// 0046966 // thyroid hormone receptor binding // inferred from physical interaction /// 0050681 // androgen receptor binding // inferred from physical interaction -44.65 185.55 -3.51 0.01 0.02 -4.49
214062_x_at 214062_x_at AI684894 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI684894 /FEA=EST /DB_XREF=gi:4896188 /DB_XREF=est:wa86h04.x1 /CLONE=IMAGE:2303095 /UG=Hs.9731 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta AI684894 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta NFKBIB 4793 NM_001001716 /// NM_001243116 /// NM_002503 /// NR_040515 /// XM_006723226 /// XM_006723227 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003713 // transcription coactivator activity // traceable author statement /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -41.62 38.96 -3.51 0.01 0.02 -4.49
207827_x_at 207827_x_at L36675 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L36675.1 /DEF=Human (clone 2-4) synuclein (NACP) mRNA, complete cds. /FEA=mRNA /GEN=NACP /PROD=synuclein /DB_XREF=gi:556213 /UG=Hs.76930 synuclein, alpha (non A4 component of amyloid precursor) /FL=gb:L36675.1 gb:D31839.1 gb:NM_007308.1 L36675 synuclein, alpha (non A4 component of amyloid precursor) SNCA 6622 NM_000345 /// NM_001146054 /// NM_001146055 /// NM_007308 0001774 // microglial cell activation // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001956 // positive regulation of neurotransmitter secretion // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006638 // neutral lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007006 // mitochondrial membrane organization // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0010040 // response to iron(II) ion // inferred from direct assay /// 0010517 // regulation of phospholipase activity // inferred from direct assay /// 0010642 // negative regulation of platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0014048 // regulation of glutamate secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // traceable author statement /// 0031115 // negative regulation of microtubule polymerization // inferred from direct assay /// 0031623 // receptor internalization // inferred from direct assay /// 0031648 // protein destabilization // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032410 // negative regulation of transporter activity // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0032769 // negative regulation of monooxygenase activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // inferred from direct assay /// 0040012 // regulation of locomotion // inferred from electronic annotation /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // traceable author statement /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042775 // mitochondrial ATP synthesis coupled electron transport // inferred from electronic annotation /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043206 // extracellular fibril organization // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from direct assay /// 0045920 // negative regulation of exocytosis // inferred from mutant phenotype /// 0045963 // negative regulation of dopamine metabolic process // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // inferred from sequence or structural similarity /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050808 // synapse organization // inferred from electronic annotation /// 0050812 // regulation of acyl-CoA biosynthetic process // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051583 // dopamine uptake involved in synaptic transmission // traceable author statement /// 0051585 // negative regulation of dopamine uptake involved in synaptic transmission // inferred from direct assay /// 0051612 // negative regulation of serotonin uptake // inferred from direct assay /// 0051622 // negative regulation of norepinephrine uptake // inferred from direct assay /// 0055074 // calcium ion homeostasis // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from direct assay /// 0070495 // negative regulation of thrombin receptor signaling pathway // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from direct assay /// 0071280 // cellular response to copper ion // inferred from direct assay /// 0071872 // cellular response to epinephrine stimulus // traceable author statement /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 1901214 // regulation of neuron death // inferred from genetic interaction 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // traceable author statement /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016234 // inclusion body // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // inferred from direct assay /// 0043195 // terminal bouton // inferred from electronic annotation /// 0043205 // fibril // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0005504 // fatty acid binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0019894 // kinesin binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043014 // alpha-tubulin binding // inferred from physical interaction /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0045502 // dynein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from direct assay /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from direct assay /// 0060961 // phospholipase D inhibitor activity // inferred from direct assay 47.88 138.36 3.51 0.01 0.02 -4.49
218334_at 218334_at NM_025075 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025075.1 /DEF=Homo sapiens hypothetical protein FLJ23445 (FLJ23445), mRNA. /FEA=mRNA /GEN=FLJ23445 /PROD=hypothetical protein FLJ23445 /DB_XREF=gi:13376622 /UG=Hs.288151 hypothetical protein FLJ23445 /FL=gb:NM_025075.1 NM_025075 THO complex 7 homolog (Drosophila) THOC7 80145 NM_001285387 /// NM_001285404 /// NM_025075 /// XM_006713339 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0046784 // viral mRNA export from host cell nucleus // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation 0000346 // transcription export complex // inferred from direct assay /// 0000347 // THO complex // inferred from direct assay /// 0000445 // THO complex part of transcription export complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 50.55 155.50 3.51 0.01 0.02 -4.49
201536_at 201536_at AL048503 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL048503 /FEA=EST /DB_XREF=gi:5936534 /DB_XREF=est:DKFZp586M1524_s1 /CLONE=DKFZp586M1524 /UG=Hs.181046 dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related) /FL=gb:BC002682.1 gb:L05147.1 gb:NM_004090.1 AL048503 dual specificity phosphatase 3 DUSP3 1845 NM_004090 0000188 // inactivation of MAPK activity // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043409 // negative regulation of MAPK cascade // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046329 // negative regulation of JNK cascade // inferred from direct assay /// 0046329 // negative regulation of JNK cascade // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from direct assay /// 0050868 // negative regulation of T cell activation // inferred from direct assay /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from direct assay 0001772 // immunological synapse // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from direct assay /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0033549 // MAP kinase phosphatase activity // inferred from mutant phenotype 45.42 91.24 3.50 0.01 0.02 -4.49
218810_at 218810_at NM_025079 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025079.1 /DEF=Homo sapiens hypothetical protein FLJ23231 (FLJ23231), mRNA. /FEA=mRNA /GEN=FLJ23231 /PROD=hypothetical protein FLJ23231 /DB_XREF=gi:13376631 /UG=Hs.288300 hypothetical protein FLJ23231 /FL=gb:NM_025079.1 gb:BC005001.1 NM_025079 microRNA 6732 /// zinc finger CCCH-type containing 12A MIR6732 /// ZC3H12A 80149 /// 102465438 NM_025079 /// NR_106790 /// XM_005271226 /// XM_005271227 /// XM_006710925 /// XM_006710926 0001525 // angiogenesis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010508 // positive regulation of autophagy // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010884 // positive regulation of lipid storage // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032715 // negative regulation of interleukin-6 production // inferred from direct assay /// 0032720 // negative regulation of tumor necrosis factor production // inferred from direct assay /// 0043031 // negative regulation of macrophage activation // inferred by curator /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045600 // positive regulation of fat cell differentiation // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -38.20 75.33 -3.50 0.01 0.02 -4.49
202546_at 202546_at NM_003761 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003761.1 /DEF=Homo sapiens vesicle-associated membrane protein 8 (endobrevin) (VAMP8), mRNA. /FEA=mRNA /GEN=VAMP8 /PROD=vesicle-associated membrane protein 8 /DB_XREF=gi:4507864 /UG=Hs.172684 vesicle-associated membrane protein 8 (endobrevin) /FL=gb:BC001634.1 gb:AF053233.1 gb:NM_003761.1 NM_003761 vesicle-associated membrane protein 8 VAMP8 8673 NM_003761 0000046 // autophagic vacuole fusion // inferred from mutant phenotype /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // not recorded /// 0006906 // vesicle fusion // not recorded /// 0006914 // autophagy // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0046718 // viral entry into host cell // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0061025 // membrane fusion // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from electronic annotation /// 0030667 // secretory granule membrane // traceable author statement /// 0031201 // SNARE complex // inferred from direct assay /// 0031902 // late endosome membrane // inferred from direct assay /// 0055037 // recycling endosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000149 // SNARE binding // not recorded /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from electronic annotation 46.00 128.30 3.50 0.01 0.02 -4.49
212055_at 212055_at BF689173 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF689173 /FEA=EST /DB_XREF=gi:11974581 /DB_XREF=est:602184834T1 /CLONE=IMAGE:4299201 /UG=Hs.22981 DKFZP586M1523 protein BF689173 tubulin polyglutamylase complex subunit 2 TPGS2 25941 NM_001271949 /// NM_001271950 /// NM_001271951 /// NM_001271952 /// NM_001271953 /// NM_001271954 /// NM_001271955 /// NM_001271956 /// NM_015476 /// XM_005258242 /// XR_243849 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 38.80 283.82 3.50 0.01 0.02 -4.49
212643_at 212643_at AI671747 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI671747 /FEA=EST /DB_XREF=gi:4851478 /DB_XREF=est:wa05e06.x1 /CLONE=IMAGE:2297218 /UG=Hs.81360 Homo sapiens cDNA: FLJ21927 fis, clone HEP04178, highly similar to HSU90909 Human clone 23722 mRNA sequence AI671747 mitogen-activated protein kinase 1 interacting protein 1-like MAPK1IP1L 93487 NM_144578 247.80 850.38 3.50 0.01 0.02 -4.49
215136_s_at 215136_s_at AL050353 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050353.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564C0482 (from clone DKFZp564C0482). /FEA=mRNA /DB_XREF=gi:4914574 /UG=Hs.274170 Opa-interacting protein 2 AL050353 exosome component 8 EXOSC8 11340 NM_181503 /// XM_006719763 /// XR_429212 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0006364 // rRNA processing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement 0000178 // exosome (RNase complex) // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0004532 // exoribonuclease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017091 // AU-rich element binding // inferred from direct assay -34.70 131.55 -3.50 0.01 0.02 -4.49
209123_at 209123_at BC000576 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000576.1 /DEF=Homo sapiens, quinoid dihydropteridine reductase, clone MGC:1657, mRNA, complete cds. /FEA=mRNA /PROD=quinoid dihydropteridine reductase /DB_XREF=gi:12653600 /UG=Hs.75438 quinoid dihydropteridine reductase /FL=gb:BC000576.1 gb:M16447.1 gb:NM_000320.1 BC000576 quinoid dihydropteridine reductase QDPR 5860 NM_000320 /// XR_241677 0001889 // liver development // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006559 // L-phenylalanine catabolic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010044 // response to aluminum ion // inferred from electronic annotation /// 0010288 // response to lead ion // inferred from electronic annotation /// 0033762 // response to glucagon // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051066 // dihydrobiopterin metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004155 // 6,7-dihydropteridine reductase activity // not recorded /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from electronic annotation /// 0070404 // NADH binding // inferred from electronic annotation 78.95 148.38 3.50 0.01 0.02 -4.49
208872_s_at 208872_s_at AA814140 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA814140 /FEA=EST /DB_XREF=gi:2883736 /DB_XREF=est:ob25c08.s1 /CLONE=IMAGE:1324718 /UG=Hs.178112 DNA segment, single copy probe LNS-CAILNS-CAII (deleted in polyposis /FL=gb:BC000232.1 AA814140 receptor accessory protein 5 REEP5 7905 NM_005669 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -151.70 523.62 -3.49 0.01 0.02 -4.49
213677_s_at 213677_s_at BG434893 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG434893 /FEA=EST /DB_XREF=gi:13341399 /DB_XREF=est:602507842F1 /CLONE=IMAGE:4604891 /UG=Hs.111749 postmeiotic segregation increased (S. cerevisiae) 1 BG434893 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) PMS1 5378 NM_000534 /// NM_001128143 /// NM_001128144 /// NM_001289408 /// NM_001289409 /// NR_110332 /// XM_005246647 /// XM_005246649 /// XM_006712596 0006200 // ATP catabolic process // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // /// 0042493 // response to drug // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0032300 // mismatch repair complex // /// 0032389 // MutLalpha complex // not recorded 0003677 // DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0032407 // MutSalpha complex binding // 38.77 107.44 3.49 0.01 0.02 -4.49
205347_s_at 205347_s_at NM_021992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021992.1 /DEF=Homo sapiens thymosin, beta, identified in neuroblastoma cells (TMSNB), mRNA. /FEA=mRNA /GEN=TMSNB /PROD=thymosin, beta, identified in neuroblastomacells /DB_XREF=gi:11496272 /UG=Hs.56145 thymosin, beta, identified in neuroblastoma cells /FL=gb:NM_021992.1 gb:BC000183.1 gb:D82345.1 NM_021992 thymosin beta 15a /// thymosin beta 15B TMSB15A /// TMSB15B 11013 /// 286527 NM_021992 /// NM_194324 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0042989 // sequestering of actin monomers // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 40.15 91.62 3.49 0.01 0.02 -4.49
51200_at 51200_at AI744084 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI744084:wc36b05.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2317233 /clone_end=3' /gb=AI744084 /gi=5112372 /ug=Hs.30783 /len=524 AI744084 chromosome 19 open reading frame 60 C19orf60 55049 NM_001100418 /// NM_001100419 /// NM_017967 /// XM_005259977 0005515 // protein binding // inferred from physical interaction 37.72 148.61 3.49 0.01 0.02 -4.49
202122_s_at 202122_s_at NM_005817 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005817.1 /DEF=Homo sapiens cargo selection protein (mannose 6 phosphate receptor binding protein) (TIP47), mRNA. /FEA=mRNA /GEN=TIP47 /PROD=cargo selection protein (mannose 6 phosphatereceptor binding protein) /DB_XREF=gi:5032182 /UG=Hs.140452 cargo selection protein (mannose 6 phosphate receptor binding protein) /FL=gb:AF057140.1 gb:AF051314.1 gb:AF051315.1 gb:AF055574.1 gb:NM_005817.1 NM_005817 perilipin 3 PLIN3 10226 NM_001164189 /// NM_001164194 /// NM_005817 0006810 // transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // traceable author statement /// 0005794 // Golgi apparatus // traceable author statement /// 0005811 // lipid particle // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 42.53 167.19 3.49 0.01 0.02 -4.49
212408_at 212408_at AK023204 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023204.1 /DEF=Homo sapiens cDNA FLJ13142 fis, clone NT2RP3003212, moderately similar to Rattus norvegicus lamina associated polypeptide 1C (LAP1C) mRNA. /FEA=mRNA /DB_XREF=gi:10435025 /UG=Hs.234265 DKFZP586G011 protein AK023204 torsin A interacting protein 1 TOR1AIP1 26092 NM_001267578 /// NM_015602 /// NM_032678 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0034504 // protein localization to nucleus // inferred from electronic annotation /// 0071763 // nuclear membrane organization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001671 // ATPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005521 // lamin binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from physical interaction /// 0051117 // ATPase binding // inferred from physical interaction 68.95 223.88 3.49 0.01 0.02 -4.49
209122_at 209122_at BC005127 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005127.1 /DEF=Homo sapiens, adipose differentiation-related protein, clone MGC:10598, mRNA, complete cds. /FEA=mRNA /PROD=adipose differentiation-related protein /DB_XREF=gi:13477306 /UG=Hs.3416 adipose differentiation-related protein /FL=gb:BC005127.1 gb:NM_001122.1 BC005127 perilipin 2 PLIN2 123 NM_001122 /// NR_038064 /// XM_006716719 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // inferred from electronic annotation /// 0019915 // lipid storage // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005811 // lipid particle // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -66.08 187.46 -3.49 0.01 0.02 -4.49
207508_at 207508_at NM_001689 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001689.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 (ATP5G3), mRNA. /FEA=mRNA /GEN=ATP5G3 /PROD=ATP synthase, H+ transporting, mitochondrial F0complex, subunit c (subunit 9) isoform 3 /DB_XREF=gi:4502300 /UG=Hs.429 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 /FL=gb:U09813.1 gb:NM_001689.1 NM_001689 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) ATP5G3 518 NM_001002258 /// NM_001190329 /// NM_001689 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 186.15 818.52 3.49 0.01 0.02 -4.49
200686_s_at 200686_s_at NM_004768 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004768.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 11 (SFRS11), mRNA. /FEA=mRNA /GEN=SFRS11 /PROD=splicing factor, arginineserine-rich 11 /DB_XREF=gi:4759099 /UG=Hs.11482 splicing factor, arginineserine-rich 11 /FL=gb:M74002.1 gb:NM_004768.1 NM_004768 serine/arginine-rich splicing factor 11 SRSF11 9295 NM_001190987 /// NM_004768 /// XM_005271338 /// XM_005271339 /// XM_006711037 /// XM_006711038 /// XM_006711039 /// XM_006711040 /// XM_006711041 /// XR_426640 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 134.15 393.23 3.48 0.01 0.02 -4.49
200005_at 200005_at NM_003753 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003753.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 7 (zeta, 6667kD) (EIF3S7), mRNA. /FEA=mRNA /GEN=EIF3S7 /PROD=eukaryotic translation initiation factor 3,subunit 7 (zeta, 6667kD) /DB_XREF=gi:4503522 /UG=Hs.55682 eukaryotic translation initiation factor 3, subunit 7 (zeta, 6667kD) /FL=gb:BC000328.1 gb:BC000469.1 gb:U54558.1 gb:NM_003753.1 NM_003753 eukaryotic translation initiation factor 3, subunit D EIF3D 8664 NM_003753 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0001732 // formation of translation initiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -175.75 659.20 -3.48 0.01 0.02 -4.49
201143_s_at 201143_s_at BC002513 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002513.1 /DEF=Homo sapiens, eukaryotic translation initiation factor 2, subunit 1 (alpha, 35kD ), clone MGC:1511, mRNA, complete cds. /FEA=mRNA /PROD=eukaryotic translation initiation factor 2,subunit 1 (alpha, 35kD ) /DB_XREF=gi:12803384 /UG=Hs.151777 eukaryotic translation initiation factor 2, subunit 1 (alpha, 35kD ) /FL=gb:BC002513.1 gb:J02645.1 gb:NM_004094.1 BC002513 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa EIF2S1 1965 NM_004094 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0043558 // regulation of translational initiation in response to stress // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005844 // polysome // traceable author statement /// 0005850 // eukaryotic translation initiation factor 2 complex // inferred from electronic annotation /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 58.85 119.12 3.48 0.01 0.02 -4.49
212281_s_at 212281_s_at BF038366 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF038366 /FEA=EST /DB_XREF=gi:10744142 /DB_XREF=est:601459338F1 /CLONE=IMAGE:3862808 /UG=Hs.199695 hypothetical protein BF038366 transmembrane protein 97 TMEM97 27346 NM_014573 /// XM_005257965 0001558 // regulation of cell growth // non-traceable author statement /// 0042632 // cholesterol homeostasis // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 54.12 107.04 3.48 0.01 0.02 -4.49
202090_s_at 202090_s_at NM_006830 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006830.1 /DEF=Homo sapiens ubiquinol-cytochrome c reductase (6.4kD) subunit (UQCR), mRNA. /FEA=mRNA /GEN=UQCR /PROD=ubiquinol-cytochrome c reductase (6.4kD)subunit /DB_XREF=gi:5803216 /UG=Hs.8372 ubiquinol-cytochrome c reductase (6.4kD) subunit /FL=gb:D55636.1 gb:NM_006830.1 NM_006830 ubiquinol-cytochrome c reductase, complex III subunit XI UQCR11 10975 NM_006830 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement 79.68 619.56 3.48 0.01 0.02 -4.49
214697_s_at 214697_s_at AW190873 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW190873 /FEA=EST /DB_XREF=gi:6465353 /DB_XREF=est:xl66a01.x1 /CLONE=IMAGE:2679624 /UG=Hs.145078 regulator of differentiation (in S. pombe) 1 AW190873 polypyrimidine tract binding protein 3 PTBP3 9991 NM_001163788 /// NM_001163790 /// NM_001244896 /// NM_001244897 /// NM_001244898 /// NM_005156 /// XM_005252324 /// XM_006717343 /// XM_006717344 /// XM_006717345 /// XM_006717346 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0043249 // erythrocyte maturation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -52.95 115.75 -3.48 0.01 0.02 -4.49
201201_at 201201_at NM_000100 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000100.1 /DEF=Homo sapiens cystatin B (stefin B) (CSTB), mRNA. /FEA=mRNA /GEN=CSTB /PROD=cystatin B (stefin B) /DB_XREF=gi:4503116 /UG=Hs.695 cystatin B (stefin B) /FL=gb:BC003370.1 gb:L03558.1 gb:NM_000100.1 NM_000100 cystatin B (stefin B) CSTB 1476 NM_000100 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004866 // endopeptidase inhibitor activity // traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -170.55 941.95 -3.48 0.01 0.02 -4.49
221744_at 221744_at AK026008 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026008.1 /DEF=Homo sapiens cDNA: FLJ22355 fis, clone HRC06344. /FEA=mRNA /DB_XREF=gi:10438707 /UG=Hs.288283 Homo sapiens cDNA: FLJ22355 fis, clone HRC06344 AK026008 DDB1 and CUL4 associated factor 7 DCAF7 10238 NM_001003725 /// NM_005828 /// NR_073585 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred by curator /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0016363 // nuclear matrix // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0080008 // Cul4-RING E3 ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 36.73 55.16 3.47 0.01 0.02 -4.49
216241_s_at 216241_s_at X57198 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X57198.1 /DEF=Human TFIIS mRNA for transcription elongation factor. /FEA=mRNA /GEN=TFIIS /PROD=transcription elongation factor /DB_XREF=gi:37071 /UG=Hs.78869 transcription elongation factor A (SII), 1 X57198 transcription elongation factor A (SII), 1 TCEA1 6917 NM_006756 /// NM_201437 /// NR_109901 /// NR_109902 /// XM_006716467 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006414 // translational elongation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0032784 // regulation of DNA-templated transcription, elongation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -107.77 532.76 -3.47 0.01 0.02 -4.49
212372_at 212372_at AK026977 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026977.1 /DEF=Homo sapiens cDNA: FLJ23324 fis, clone HEP12482, highly similar to HUMMYOHCB Human nonmuscle myosin heavy chain-B (MYH10) mRNA. /FEA=mRNA /DB_XREF=gi:10439970 /UG=Hs.296842 Homo sapiens, clone IMAGE:3357927, mRNA, partial cds AK026977 myosin, heavy chain 10, non-muscle MYH10 4628 NM_001256012 /// NM_001256095 /// NM_005964 /// XM_005256651 /// XM_005256652 /// XM_005256653 0000281 // mitotic cytokinesis // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001778 // plasma membrane repair // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from mutant phenotype /// 0006887 // exocytosis // inferred from electronic annotation /// 0006930 // substrate-dependent cell migration, cell extension // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0021592 // fourth ventricle development // inferred from electronic annotation /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0021678 // third ventricle development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030048 // actin filament-based movement // inferred from direct assay /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0031032 // actomyosin structure organization // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0055003 // cardiac myofibril assembly // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay /// 0016459 // myosin complex // non-traceable author statement /// 0016460 // myosin II complex // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from direct assay /// 0042641 // actomyosin // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0097513 // myosin II filament // inferred from direct assay 0000146 // microfilament motor activity // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // non-traceable author statement /// 0030898 // actin-dependent ATPase activity // inferred from direct assay /// 0030898 // actin-dependent ATPase activity // inferred from mutant phenotype /// 0043531 // ADP binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 130.40 529.50 3.47 0.01 0.02 -4.49
202132_at 202132_at AA081084 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA081084 /FEA=EST /DB_XREF=gi:1623002 /DB_XREF=est:zn32h12.s1 /CLONE=IMAGE:549191 /UG=Hs.24341 transcriptional co-activator with PDZ-binding motif (TAZ) /FL=gb:NM_015472.1 AA081084 WW domain containing transcription regulator 1 WWTR1 25937 NM_001168278 /// NM_001168280 /// NM_015472 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0017145 // stem cell division // inferred from direct assay /// 0032835 // glomerulus development // inferred from electronic annotation /// 0035329 // hippo signaling // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement /// 0035414 // negative regulation of catenin import into nucleus // inferred from mutant phenotype /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0060271 // cilium morphogenesis // inferred from electronic annotation /// 0060390 // regulation of SMAD protein import into nucleus // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation 65.47 199.61 3.47 0.01 0.02 -4.49
209717_at 209717_at AF008915 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF008915.1 /DEF=Homo sapiens EVI5 homolog mRNA, complete cds. /FEA=mRNA /PROD=EVI-5 homolog /DB_XREF=gi:3093475 /UG=Hs.179747 ecotropic viral integration site 5 /FL=gb:AF008915.1 AF008915 ecotropic viral integration site 5 EVI5 7813 NM_005665 /// XM_005271179 /// XM_005271180 /// XM_005271182 /// XM_006710884 /// XM_006710885 /// XM_006710886 /// XM_006710887 /// XM_006710888 /// XM_006710889 /// XM_006710890 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 37.48 61.14 3.47 0.01 0.02 -4.49
201423_s_at 201423_s_at AL037208 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL037208 /FEA=EST /DB_XREF=gi:5406648 /DB_XREF=est:DKFZp564B1169_s1 /CLONE=DKFZp564B1169 /UG=Hs.183874 cullin 4A /FL=gb:NM_003589.1 gb:AF077188.1 AL037208 cullin 4A CUL4A 8451 NM_001008895 /// NM_001278513 /// NM_001278514 /// NM_003589 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031464 // Cul4A-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0080008 // Cul4-RING E3 ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation -36.43 174.81 -3.47 0.01 0.02 -4.49
208642_s_at 208642_s_at AA205834 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA205834 /FEA=EST /DB_XREF=gi:1801206 /DB_XREF=est:zq53g12.s1 /CLONE=IMAGE:645382 /UG=Hs.84981 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kD) /FL=gb:NM_021141.2 gb:J04977.1 gb:M30938.1 AA205834 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) XRCC5 7520 NM_021141 /// XM_005246836 /// XM_005246837 0000723 // telomere maintenance // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from mutant phenotype /// 0006303 // double-strand break repair via nonhomologous end joining // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0060218 // hematopoietic stem cell differentiation // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from electronic annotation /// 0071475 // cellular hyperosmotic salinity response // inferred from electronic annotation /// 0071481 // cellular response to X-ray // inferred from electronic annotation /// 0075713 // establishment of integrated proviral latency // traceable author statement 0000783 // nuclear telomere cap complex // traceable author statement /// 0000784 // nuclear chromosome, telomeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0043564 // Ku70:Ku80 complex // inferred from direct assay /// 0070419 // nonhomologous end joining complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author statement /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003691 // double-stranded telomeric DNA binding // inferred from direct assay /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042162 // telomeric DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from mutant phenotype 171.45 821.50 3.47 0.01 0.02 -4.49
212399_s_at 212399_s_at D50911 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D50911.2 /DEF=Homo sapiens mRNA for KIAA0121 protein, partial cds. /FEA=mRNA /GEN=KIAA0121 /PROD=KIAA0121 protein /DB_XREF=gi:6633996 /UG=Hs.155584 KIAA0121 gene product D50911 vestigial-like family member 4 VGLL4 9686 NM_001128219 /// NM_001128220 /// NM_001128221 /// NM_001284390 /// NM_001284391 /// NM_014667 /// XM_006713423 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation -43.25 125.88 -3.46 0.01 0.02 -4.49
217732_s_at 217732_s_at AF092128 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF092128.1 /DEF=Homo sapiens putative transmembrane protein E3-16 mRNA, complete cds. /FEA=mRNA /PROD=putative transmembrane protein E3-16 /DB_XREF=gi:5138905 /UG=Hs.239625 integral membrane protein 2B /FL=gb:NM_021999.1 gb:AF136973.1 gb:BC000554.1 gb:AF092128.1 gb:AF152462.1 gb:AF246221.1 AF092128 integral membrane protein 2B ITM2B 9445 NM_021999 0006915 // apoptotic process // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // inferred from direct assay /// 0031301 // integral component of organelle membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001540 // beta-amyloid binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation 154.45 890.25 3.46 0.01 0.02 -4.49
200023_s_at 200023_s_at NM_003754 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003754.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD) (EIF3S5), mRNA. /FEA=mRNA /GEN=EIF3S5 /PROD=eukaryotic translation initiation factor 3,subunit 5 (epsilon, 47kD) /DB_XREF=gi:4503518 /UG=Hs.7811 eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD) /FL=gb:BC000490.1 gb:U94855.1 gb:NM_003754.1 NM_003754 eukaryotic translation initiation factor 3, subunit F EIF3F 8665 NM_003754 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016579 // protein deubiquitination // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0005852 // eukaryotic translation initiation factor 3 complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // traceable author statement /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -175.30 1424.80 -3.46 0.01 0.02 -4.49
211202_s_at 211202_s_at AF087481 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF087481.1 /DEF=Homo sapiens retinoblastoma binding protein 2 homolog 1 (RBBP2H1) mRNA, complete cds. /FEA=mRNA /GEN=RBBP2H1 /PROD=retinoblastoma binding protein 2 homolog 1 /DB_XREF=gi:4322487 /UG=Hs.143323 putative DNAchromatin binding motif /FL=gb:AF087481.1 AF087481 lysine (K)-specific demethylase 5B KDM5B 10765 NM_006618 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034720 // histone H3-K4 demethylation // inferred from direct assay /// 0034721 // histone H3-K4 demethylation, trimethyl-H3-K4-specific // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0032453 // histone demethylase activity (H3-K4 specific) // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // inferred from direct assay /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -95.75 249.90 -3.46 0.01 0.02 -4.49
204045_at 204045_at NM_004780 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004780.1 /DEF=Homo sapiens transcription elongation factor A (SII)-like 1 (TCEAL1), mRNA. /FEA=mRNA /GEN=TCEAL1 /PROD=transcription elongation factor A (SII)-like 1 /DB_XREF=gi:4759215 /UG=Hs.95243 transcription elongation factor A (SII)-like 1 /FL=gb:BC000809.1 gb:NM_004780.1 gb:M99701.1 NM_004780 transcription elongation factor A (SII)-like 1 TCEAL1 9338 NM_001006639 /// NM_001006640 /// NM_004780 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement 40.27 87.51 3.46 0.01 0.02 -4.49
219020_at 219020_at NM_022460 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022460.1 /DEF=Homo sapiens hypothetical protein FLJ14249 similar to HS1 binding protein 3 (FLJ14249), mRNA. /FEA=mRNA /GEN=FLJ14249 /PROD=hypothetical protein FLJ14249 similar to HS1binding protein 3 /DB_XREF=gi:11968000 /UG=Hs.125520 hypothetical protein FLJ14249 similar to HS1 binding protein 3 /FL=gb:NM_022460.1 NM_022460 HCLS1 binding protein 3 HS1BP3 64342 NM_022460 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation -64.25 132.70 -3.46 0.01 0.02 -4.49
207559_s_at 207559_s_at NM_005096 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005096.1 /DEF=Homo sapiens zinc finger protein 261 (ZNF261), mRNA. /FEA=mRNA /GEN=ZNF261 /PROD=zinc finger protein 261 /DB_XREF=gi:4827066 /UG=Hs.9568 zinc finger protein 261 /FL=gb:AB002383.1 gb:NM_005096.1 NM_005096 zinc finger, MYM-type 3 ZMYM3 9203 NM_001171162 /// NM_001171163 /// NM_005096 /// NM_201599 /// XM_005262309 /// XM_005262310 /// XM_006724715 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007275 // multicellular organismal development // traceable author statement /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 46.72 122.14 3.46 0.01 0.02 -4.49
218053_at 218053_at NM_017892 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017892.1 /DEF=Homo sapiens hypothetical protein FLJ20585 (FLJ20585), mRNA. /FEA=mRNA /GEN=FLJ20585 /PROD=hypothetical protein FLJ20585 /DB_XREF=gi:8923548 /UG=Hs.107213 hypothetical protein FLJ20585 /FL=gb:AF151059.1 gb:NM_017892.1 NM_017892 PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) PRPF40A 55660 NM_017892 /// XM_005246676 /// XM_005246677 /// XM_005246678 /// XM_005246679 0006397 // mRNA processing // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070064 // proline-rich region binding // inferred from electronic annotation 61.45 284.75 3.46 0.01 0.02 -4.49
214288_s_at 214288_s_at W86293 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W86293 /FEA=EST /DB_XREF=gi:1398731 /DB_XREF=est:zh54c06.s1 /CLONE=IMAGE:415882 /UG=Hs.75748 proteasome (prosome, macropain) subunit, beta type, 1 W86293 proteasome (prosome, macropain) subunit, beta type, 1 PSMB1 5689 NM_002793 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -99.58 1085.91 -3.46 0.01 0.02 -4.49
219522_at 219522_at NM_014344 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014344.1 /DEF=Homo sapiens putative secreted ligand homologous to fjx1 (FJX1), mRNA. /FEA=mRNA /GEN=FJX1 /PROD=putative secreted ligand homologous to fjx1 /DB_XREF=gi:7657095 /UG=Hs.39384 putative secreted ligand homologous to fjx1 /FL=gb:NM_014344.1 NM_014344 four jointed box 1 (Drosophila) FJX1 24147 NM_014344 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 45.08 74.26 3.46 0.01 0.02 -4.49
218881_s_at 218881_s_at NM_024530 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024530.1 /DEF=Homo sapiens hypothetical protein FLJ23306 (FLJ23306), mRNA. /FEA=mRNA /GEN=FLJ23306 /PROD=hypothetical protein FLJ23306 /DB_XREF=gi:13375679 /UG=Hs.325364 hypothetical protein FLJ23306 /FL=gb:NM_024530.1 NM_024530 FOS-like antigen 2 FOSL2 2355 NM_005253 /// XM_005264231 /// XM_006711976 /// XM_006711977 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008219 // cell death // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -45.35 57.48 -3.45 0.01 0.02 -4.49
213941_x_at 213941_x_at AI970731 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI970731 /FEA=EST /DB_XREF=gi:5767485 /DB_XREF=est:wr14b05.x1 /CLONE=IMAGE:2481489 /UG=Hs.301547 ribosomal protein S7 AI970731 ribosomal protein S7 RPS7 6201 NM_001011 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0002181 // cytoplasmic translation // not recorded /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030686 // 90S preribosome // not recorded /// 0032040 // small-subunit processome // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -368.75 2372.15 -3.45 0.01 0.02 -4.49
219918_s_at 219918_s_at NM_018123 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018123.1 /DEF=Homo sapiens hypothetical protein FLJ10517 (FLJ10517), mRNA. /FEA=mRNA /GEN=FLJ10517 /PROD=hypothetical protein FLJ10517 /DB_XREF=gi:8922484 /UG=Hs.279797 hypothetical protein FLJ10517 /FL=gb:NM_018123.1 NM_018123 asp (abnormal spindle) homolog, microcephaly associated (Drosophila) ASPM 259266 NM_001206846 /// NM_018136 0001764 // neuron migration // inferred from electronic annotation /// 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0021873 // forebrain neuroblast division // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045769 // negative regulation of asymmetric cell division // inferred from electronic annotation /// 0048477 // oogenesis // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051661 // maintenance of centrosome location // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation 71.00 201.25 3.45 0.01 0.02 -4.49
212356_at 212356_at AB002321 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB002321.1 /DEF=Human mRNA for KIAA0323 gene, partial cds. /FEA=mRNA /GEN=KIAA0323 /DB_XREF=gi:2224586 /UG=Hs.7911 KIAA0323 protein AB002321 KH and NYN domain containing KHNYN 23351 NM_001290256 /// NM_001290257 /// NM_015299 /// XM_005267473 /// XM_005267474 /// XM_005267476 0003723 // RNA binding // inferred from electronic annotation 37.00 74.15 3.45 0.01 0.02 -4.49
202026_at 202026_at NM_003002 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003002.1 /DEF=Homo sapiens succinate dehydrogenase complex, subunit D, integral membrane protein (SDHD), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=SDHD /PROD=succinate dehydrogenase complex, subunit Dprecursor /DB_XREF=gi:4506864 /UG=Hs.168289 succinate dehydrogenase complex, subunit D, integral membrane protein /FL=gb:BC005263.1 gb:AB006202.1 gb:NM_003002.1 NM_003002 succinate dehydrogenase complex, subunit D, integral membrane protein SDHD 6392 NM_001276503 /// NM_001276504 /// NM_001276506 /// NM_003002 /// NR_077060 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // traceable author statement /// 0005740 // mitochondrial envelope // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000104 // succinate dehydrogenase activity // inferred from direct assay /// 0009055 // electron carrier activity // traceable author statement /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048039 // ubiquinone binding // inferred from sequence or structural similarity 76.62 172.09 3.45 0.01 0.02 -4.49
204533_at 204533_at NM_001565 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001565.1 /DEF=Homo sapiens small inducible cytokine subfamily B (Cys-X-Cys), member 10 (SCYB10), mRNA. /FEA=mRNA /GEN=SCYB10 /PROD=interferon gamma-induced precursor /DB_XREF=gi:4504700 /UG=Hs.2248 small inducible cytokine subfamily B (Cys-X-Cys), member 10 /FL=gb:NM_001565.1 NM_001565 chemokine (C-X-C motif) ligand 10 CXCL10 3627 NM_001565 0002690 // positive regulation of leukocyte chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007267 // cell-cell signaling // traceable author statement /// 0007517 // muscle organ development // traceable author statement /// 0008015 // blood circulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009306 // protein secretion // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010818 // T cell chemotaxis // inferred from mutant phenotype /// 0010996 // response to auditory stimulus // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030816 // positive regulation of cAMP metabolic process // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0045859 // regulation of protein kinase activity // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype /// 2000406 // positive regulation of T cell migration // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008009 // chemokine activity // inferred from direct assay /// 0008201 // heparin binding // inferred from mutant phenotype /// 0008603 // cAMP-dependent protein kinase regulator activity // traceable author statement /// 0048248 // CXCR3 chemokine receptor binding // inferred from direct assay -35.95 53.02 -3.45 0.01 0.02 -4.49
202250_s_at 202250_s_at NM_015726 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015726.1 /DEF=Homo sapiens H326 (H326), mRNA. /FEA=mRNA /GEN=H326 /PROD=H326 /DB_XREF=gi:7657147 /UG=Hs.110707 H326 /FL=gb:U06631.1 gb:NM_015726.1 NM_015726 DDB1 and CUL4 associated factor 8 DCAF8 50717 NM_015726 /// NR_028103 /// NR_028104 /// NR_028105 /// NR_028106 0016567 // protein ubiquitination // inferred by curator /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005777 // peroxisome // inferred from electronic annotation /// 0080008 // Cul4-RING E3 ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 42.05 77.58 3.45 0.01 0.02 -4.49
202550_s_at 202550_s_at NM_004738 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004738.1 /DEF=Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), mRNA. /FEA=mRNA /GEN=VAPB /PROD=VAMP (vesicle-associated membraneprotein)-associated protein B and C /DB_XREF=gi:4759301 /UG=Hs.182625 VAMP (vesicle-associated membrane protein)-associated protein B and C /FL=gb:BC001712.1 gb:AF086628.1 gb:NM_004738.1 gb:AF160212.1 NM_004738 VAMP (vesicle-associated membrane protein)-associated protein B and C VAPB 9217 NM_001195677 /// NM_004738 /// NR_036633 /// XM_006723888 0006665 // sphingolipid metabolic process // traceable author statement /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // inferred from direct assay /// 0008219 // cell death // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from direct assay /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0048487 // beta-tubulin binding // inferred from direct assay -48.28 216.96 -3.45 0.01 0.02 -4.49
202602_s_at 202602_s_at NM_014500 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014500.1 /DEF=Homo sapiens HIV TAT specific factor 1 (HTATSF1), mRNA. /FEA=mRNA /GEN=HTATSF1 /PROD=HIV TAT specific factor 1 /DB_XREF=gi:7657636 /UG=Hs.171595 HIV TAT specific factor 1 /FL=gb:U76992.1 gb:NM_014500.1 NM_014500 HIV-1 Tat specific factor 1 HTATSF1 27336 NM_001163280 /// NM_014500 /// XM_005262404 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0019079 // viral genome replication // traceable author statement /// 0032784 // regulation of DNA-templated transcription, elongation // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 38.08 147.01 3.45 0.01 0.02 -4.49
204864_s_at 204864_s_at NM_002184 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002184.1 /DEF=Homo sapiens interleukin 6 signal transducer (gp130, oncostatin M receptor) (IL6ST), mRNA. /FEA=mRNA /GEN=IL6ST /PROD=interleukin 6 signal transducer (gp130,oncostatin M receptor) /DB_XREF=gi:4504674 /UG=Hs.82065 interleukin 6 signal transducer (gp130, oncostatin M receptor) /FL=gb:M57230.1 gb:NM_002184.1 NM_002184 interleukin 6 signal transducer IL6ST 3572 NM_001190981 /// NM_002184 /// NM_175767 /// NR_120480 /// XM_005248496 0002675 // positive regulation of acute inflammatory response // inferred by curator /// 0002821 // positive regulation of adaptive immune response // inferred by curator /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // traceable author statement /// 0010613 // positive regulation of cardiac muscle hypertrophy // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0034097 // response to cytokine // inferred from direct assay /// 0038154 // interleukin-11-mediated signaling pathway // inferred from electronic annotation /// 0038165 // oncostatin-M-mediated signaling pathway // inferred from mutant phenotype /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from genetic interaction /// 0070102 // interleukin-6-mediated signaling pathway // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from direct assay /// 0070106 // interleukin-27-mediated signaling pathway // inferred from mutant phenotype /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005896 // interleukin-6 receptor complex // inferred from direct assay /// 0005900 // oncostatin-M receptor complex // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from direct assay 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from genetic interaction /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // inferred from genetic interaction /// 0004924 // oncostatin-M receptor activity // inferred from direct assay /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from physical interaction /// 0005138 // interleukin-6 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0019838 // growth factor binding // inferred from physical interaction /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0045509 // interleukin-27 receptor activity // inferred by curator -169.15 193.17 -3.45 0.01 0.02 -4.49
201256_at 201256_at NM_004718 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004718.1 /DEF=Homo sapiens cytochrome c oxidase subunit VIIa polypeptide 2 like (COX7A2L), mRNA. /FEA=mRNA /GEN=COX7A2L /PROD=cytochrome c oxidase subunit VIIa polypeptide 2like /DB_XREF=gi:4758041 /UG=Hs.30888 cytochrome c oxidase subunit VIIa polypeptide 2 like /FL=gb:BC005251.1 gb:AB007618.1 gb:NM_004718.1 NM_004718 cytochrome c oxidase subunit VIIa polypeptide 2 like COX7A2L 9167 NM_004718 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation -60.10 569.10 -3.45 0.01 0.02 -4.49
202926_at 202926_at NM_015909 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015909.1 /DEF=Homo sapiens neuroblastoma-amplified protein (LOC51594), mRNA. /FEA=mRNA /GEN=LOC51594 /PROD=neuroblastoma-amplified protein /DB_XREF=gi:7706239 /UG=Hs.15430 neuroblastoma-amplified protein /FL=gb:AF056195.1 gb:NM_015909.1 NM_015909 neuroblastoma amplified sequence NBAS 51594 NM_015909 /// NR_052013 0000956 // nuclear-transcribed mRNA catabolic process // inferred from mutant phenotype /// 2000623 // negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay -51.27 124.81 -3.44 0.01 0.02 -4.49
213577_at 213577_at AA639705 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA639705 /FEA=EST /DB_XREF=gi:2563484 /DB_XREF=est:np60h03.s1 /CLONE=IMAGE:1130741 /UG=Hs.71465 squalene epoxidase AA639705 squalene epoxidase SQLE 6713 NM_003129 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006725 // cellular aromatic compound metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // non-traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // non-traceable author statement 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004506 // squalene monooxygenase activity // non-traceable author statement /// 0004506 // squalene monooxygenase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation 92.10 132.98 3.44 0.01 0.02 -4.49
204809_at 204809_at NM_006660 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006660.3 /DEF=Homo sapiens ClpX (caseinolytic protease X, E. coli) homolog (CLPX), mRNA. /FEA=mRNA /GEN=CLPX /PROD=ClpX (caseinolytic protease X, E. coli) homolog /DB_XREF=gi:12597621 /UG=Hs.113823 ClpX (caseinolytic protease X, E. coli) homolog /FL=gb:NM_006660.3 NM_006660 caseinolytic mitochondrial matrix peptidase chaperone subunit CLPX 10845 NM_006660 /// XR_429441 0006200 // ATP catabolic process // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from direct assay /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0009368 // endopeptidase Clp complex // inferred from direct assay /// 0009841 // mitochondrial endopeptidase Clp complex // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004176 // ATP-dependent peptidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation -39.65 79.55 -3.44 0.01 0.02 -4.49
208230_s_at 208230_s_at NM_013960 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013960.1 /DEF=Homo sapiens neuregulin 1 (NRG1), transcript variant ndf43, mRNA. /FEA=mRNA /GEN=NRG1 /PROD=neuregulin 1 isoform ndf43 /DB_XREF=gi:7669519 /UG=Hs.172816 neuregulin 1 /FL=gb:U02326.1 gb:NM_013960.1 NM_013960 neuregulin 1 NRG1 3084 NM_001159995 /// NM_001159996 /// NM_001159999 /// NM_001160001 /// NM_001160002 /// NM_001160004 /// NM_001160005 /// NM_001160007 /// NM_001160008 /// NM_004495 /// NM_013956 /// NM_013957 /// NM_013958 /// NM_013959 /// NM_013960 /// NM_013962 /// NM_013964 /// XM_005273485 /// XM_005273486 /// XM_005273487 /// XM_006716335 0000165 // MAPK cascade // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0003161 // cardiac conduction system development // inferred from electronic annotation /// 0003222 // ventricular trabecula myocardium morphogenesis // inferred from direct assay /// 0007154 // cell communication // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from direct assay /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010667 // negative regulation of cardiac muscle cell apoptotic process // inferred from direct assay /// 0014032 // neural crest cell development // traceable author statement /// 0016477 // cell migration // inferred from electronic annotation /// 0021781 // glial cell fate commitment // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030879 // mammary gland development // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038127 // ERBB signaling pathway // inferred from direct assay /// 0042060 // wound healing // inferred from direct assay /// 0042060 // wound healing // traceable author statement /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0043496 // regulation of protein homodimerization activity // traceable author statement /// 0043497 // regulation of protein heterodimerization activity // inferred from direct assay /// 0043624 // cellular protein complex disassembly // inferred from genetic interaction /// 0045087 // innate immune response // traceable author statement /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0051048 // negative regulation of secretion // inferred from direct assay /// 0051155 // positive regulation of striated muscle cell differentiation // inferred from sequence or structural similarity /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from sequence or structural similarity /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from direct assay /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from direct assay /// 0060379 // cardiac muscle cell myoblast differentiation // inferred from direct assay /// 0060956 // endocardial cell differentiation // inferred from direct assay /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from direct assay 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003712 // transcription cofactor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005125 // cytokine activity // traceable author statement /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // non-traceable author statement /// 0030296 // protein tyrosine kinase activator activity // inferred from direct assay /// 0030297 // transmembrane receptor protein tyrosine kinase activator activity // inferred by curator /// 0030297 // transmembrane receptor protein tyrosine kinase activator activity // non-traceable author statement /// 0030971 // receptor tyrosine kinase binding // non-traceable author statement /// 0043125 // ErbB-3 class receptor binding // inferred from direct assay /// 0043125 // ErbB-3 class receptor binding // inferred from physical interaction -37.38 70.79 -3.43 0.01 0.02 -4.49
208750_s_at 208750_s_at AA580004 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA580004 /FEA=EST /DB_XREF=gi:2355331 /DB_XREF=est:nl79c05.s1 /CLONE=IMAGE:1056872 /UG=Hs.74571 ADP-ribosylation factor 1 /FL=gb:M84326.1 gb:M36340.1 gb:AF055002.1 gb:AF052179.1 gb:NM_001658.2 AA580004 ADP-ribosylation factor 1 /// microRNA 3620 ARF1 /// MIR3620 375 /// 100500810 NM_001024226 /// NM_001024227 /// NM_001024228 /// NM_001658 /// NR_037415 0002090 // regulation of receptor internalization // inferred from sequence or structural similarity /// 0006184 // GTP catabolic process // traceable author statement /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from mutant phenotype /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0034315 // regulation of Arp2/3 complex-mediated actin nucleation // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0060292 // long term synaptic depression // inferred from sequence or structural similarity /// 0061024 // membrane organization // traceable author statement /// 0097061 // dendritic spine organization // inferred from sequence or structural similarity 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0012505 // endomembrane system // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -108.85 458.88 -3.43 0.01 0.02 -4.49
201742_x_at 201742_x_at NM_006924 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006924.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 1 (splicing factor 2, alternate splicing factor) (SFRS1), mRNA. /FEA=mRNA /GEN=SFRS1 /PROD=splicing factor, arginineserine-rich 1(splicing factor 2, alternate splicing factor) /DB_XREF=gi:5902075 /UG=Hs.73737 splicing factor, arginineserine-rich 1 (splicing factor 2, alternate splicing factor) /FL=gb:M69040.1 gb:NM_006924.1 NM_006924 serine/arginine-rich splicing factor 1 SRSF1 6426 NM_001078166 /// NM_006924 /// NR_034041 /// XM_006722012 /// XR_429911 /// XR_429912 /// XR_429999 /// XR_430000 /// XR_430001 /// XR_430002 /// XR_433418 /// XR_433419 /// XR_433420 /// XR_433421 /// XR_433422 0000395 // mRNA 5'-splice site recognition // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006376 // mRNA splice site selection // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from physical interaction /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // inferred from electronic annotation 146.88 733.19 3.43 0.01 0.02 -4.49
201435_s_at 201435_s_at AW268640 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW268640 /FEA=EST /DB_XREF=gi:6655670 /DB_XREF=est:xv52a03.x1 /CLONE=IMAGE:2816716 /UG=Hs.79306 eukaryotic translation initiation factor 4E /FL=gb:M15353.1 gb:NM_001968.1 AW268640 eukaryotic translation initiation factor 4E EIF4E 1977 NM_001130678 /// NM_001130679 /// NM_001968 /// XM_006714126 /// XM_006714127 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005845 // mRNA cap binding complex // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016442 // RISC complex // inferred from direct assay /// 0033391 // chromatoid body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000339 // RNA cap binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0031370 // eukaryotic initiation factor 4G binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 64.65 274.60 3.43 0.01 0.02 -4.49
208962_s_at 208962_s_at BE540552 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE540552 /FEA=EST /DB_XREF=gi:9769197 /DB_XREF=est:601066683F1 /CLONE=IMAGE:3452925 /UG=Hs.132898 fatty acid desaturase 1 /FL=gb:AF084558.1 gb:NM_013402.2 gb:AL512760.1 gb:AF199596.1 gb:AF226273.1 BE540552 fatty acid desaturase 1 /// microRNA 1908 FADS1 /// MIR1908 3992 /// 100302263 NM_013402 /// NR_031729 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // inferred from direct assay /// 0006636 // unsaturated fatty acid biosynthetic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007267 // cell-cell signaling // non-traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // traceable author statement /// 0009267 // cellular response to starvation // inferred from direct assay /// 0009744 // response to sucrose // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0033189 // response to vitamin A // inferred from electronic annotation /// 0033559 // unsaturated fatty acid metabolic process // traceable author statement /// 0036109 // alpha-linolenic acid metabolic process // traceable author statement /// 0043651 // linoleic acid metabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045595 // regulation of cell differentiation // non-traceable author statement /// 0046456 // icosanoid biosynthetic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // non-traceable author statement /// 0043231 // intracellular membrane-bounded organelle // non-traceable author statement 0000248 // C-5 sterol desaturase activity // traceable author statement /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 31.68 96.01 3.43 0.01 0.02 -4.49
201791_s_at 201791_s_at NM_001360 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001360.1 /DEF=Homo sapiens 7-dehydrocholesterol reductase (DHCR7), mRNA. /FEA=mRNA /GEN=DHCR7 /PROD=7-dehydrocholesterol reductase /DB_XREF=gi:4503320 /UG=Hs.11806 7-dehydrocholesterol reductase /FL=gb:BC000054.1 gb:AF034544.1 gb:AF067127.1 gb:AF096305.1 gb:NM_001360.1 NM_001360 7-dehydrocholesterol reductase DHCR7 1717 NM_001163817 /// NM_001360 0001568 // blood vessel development // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005640 // nuclear outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0047598 // 7-dehydrocholesterol reductase activity // inferred from direct assay 36.73 78.51 3.43 0.01 0.02 -4.49
218212_s_at 218212_s_at NM_004531 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004531.1 /DEF=Homo sapiens molybdenum cofactor synthesis 2 (MOCS2), mRNA. /FEA=mRNA /GEN=MOCS2 /PROD=molybdenum cofactor synthesis 2 /DB_XREF=gi:4758731 /UG=Hs.70565 molybdenum cofactor synthesis 2 /FL=gb:NM_004531.1 gb:AF155659.1 NM_004531 molybdenum cofactor synthesis 2 MOCS2 4338 NM_004531 /// NM_176806 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from direct assay /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from mutant phenotype /// 0032324 // molybdopterin cofactor biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0019008 // molybdopterin synthase complex // inferred from physical interaction /// 0019008 // molybdopterin synthase complex // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030366 // molybdopterin synthase activity // inferred from direct assay /// 0030366 // molybdopterin synthase activity // traceable author statement /// 0042802 // identical protein binding // inferred from electronic annotation 43.80 84.62 3.43 0.01 0.02 -4.49
207467_x_at 207467_x_at NM_001750 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001750.2 /DEF=Homo sapiens calpastatin (CAST), mRNA. /FEA=mRNA /GEN=CAST /PROD=calpastatin /DB_XREF=gi:5729759 /UG=Hs.279607 calpastatin /FL=gb:U58996.2 gb:NM_001750.2 NM_001750 calpastatin CAST 831 NM_001042440 /// NM_001042441 /// NM_001042442 /// NM_001042443 /// NM_001042444 /// NM_001042445 /// NM_001042446 /// NM_001190442 /// NM_001284212 /// NM_001284213 /// NM_001750 /// NM_173060 /// NM_173061 /// NM_173062 /// NM_173063 /// NR_033798 /// NR_104285 /// XM_006714696 /// XM_006714697 /// XM_006714698 /// XM_006714699 /// XM_006714700 /// XM_006714701 /// XM_006714702 /// XM_006714703 /// XM_006714704 /// XM_006714705 /// XM_006714706 /// XM_006714707 /// XM_006714708 /// XM_006714709 /// XM_006714710 /// XM_006714711 /// XM_006714712 /// XM_006714713 /// XM_006714714 /// XM_006714715 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // traceable author statement /// 2000675 // negative regulation of type B pancreatic cell apoptotic process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0004866 // endopeptidase inhibitor activity // traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // non-traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -67.62 305.41 -3.43 0.01 0.02 -4.49
212141_at 212141_at AA604621 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA604621 /FEA=EST /DB_XREF=gi:2445485 /DB_XREF=est:no84b08.s1 /CLONE=IMAGE:1113495 /UG=Hs.154443 minichromosome maintenance deficient (S. cerevisiae) 4 AA604621 minichromosome maintenance complex component 4 MCM4 4173 NM_005914 /// NM_182746 /// XM_005251234 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // non-traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006268 // DNA unwinding involved in DNA replication // inferred from electronic annotation /// 0006270 // DNA replication initiation // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0015979 // photosynthesis // inferred from electronic annotation /// 0015995 // chlorophyll biosynthetic process // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0042555 // MCM complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016851 // magnesium chelatase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 55.85 47.02 3.43 0.01 0.02 -4.49
202589_at 202589_at NM_001071 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001071.1 /DEF=Homo sapiens thymidylate synthetase (TYMS), mRNA. /FEA=mRNA /GEN=TYMS /PROD=thymidylate synthetase /DB_XREF=gi:4507750 /UG=Hs.82962 thymidylate synthetase /FL=gb:BC002567.1 gb:NM_001071.1 NM_001071 thymidylate synthetase TYMS 7298 NM_001071 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0005976 // polysaccharide metabolic process // inferred from electronic annotation /// 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006231 // dTMP biosynthetic process // inferred from electronic annotation /// 0006235 // dTTP biosynthetic process // inferred from electronic annotation /// 0006260 // DNA replication // non-traceable author statement /// 0006281 // DNA repair // non-traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009157 // deoxyribonucleoside monophosphate biosynthetic process // traceable author statement /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0019088 // immortalization of host cell by virus // inferred from electronic annotation /// 0019860 // uracil metabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0033189 // response to vitamin A // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046078 // dUMP metabolic process // inferred from electronic annotation /// 0046134 // pyrimidine nucleoside biosynthetic process // traceable author statement /// 0046653 // tetrahydrofolate metabolic process // inferred from electronic annotation /// 0046683 // response to organophosphorus // inferred from expression pattern /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0048589 // developmental growth // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0060574 // intestinal epithelial cell maturation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0004799 // thymidylate synthase activity // traceable author statement /// 0005542 // folic acid binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 286.25 722.50 3.43 0.01 0.02 -4.49
210312_s_at 210312_s_at BC002640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002640.1 /DEF=Homo sapiens, Similar to uterine protein, clone MGC:4279, mRNA, complete cds. /FEA=mRNA /PROD=Similar to uterine protein /DB_XREF=gi:12803610 /UG=Hs.4187 hypothetical protein 24636 /FL=gb:BC002640.1 BC002640 intraflagellar transport 20 homolog (Chlamydomonas) IFT20 90410 NM_001267774 /// NM_001267775 /// NM_001267776 /// NM_001267777 /// NM_001267778 /// NM_174887 0030030 // cell projection organization // inferred from electronic annotation /// 0034067 // protein localization to Golgi apparatus // inferred from mutant phenotype /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0051642 // centrosome localization // inferred from electronic annotation /// 1902017 // regulation of cilium assembly // inferred from sequence or structural similarity /// 2000785 // regulation of autophagic vacuole assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005814 // centriole // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030992 // intraciliary transport particle B // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0044292 // dendrite terminus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 38.25 112.40 3.43 0.01 0.02 -4.49
202908_at 202908_at NM_006005 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006005.2 /DEF=Homo sapiens Wolfram syndrome 1 (wolframin) (WFS1), mRNA. /FEA=mRNA /GEN=WFS1 /PROD=Wolfram syndrome protein /DB_XREF=gi:13376995 /UG=Hs.26077 Wolfram syndrome 1 (wolframin) /FL=gb:NM_006005.2 gb:AF084481.1 NM_006005 Wolfram syndrome 1 (wolframin) WFS1 7466 NM_001145853 /// NM_006005 0001822 // kidney development // inferred from mutant phenotype /// 0003091 // renal water homeostasis // inferred from mutant phenotype /// 0006983 // ER overload response // inferred by curator /// 0006983 // ER overload response // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007601 // visual perception // inferred from mutant phenotype /// 0007605 // sensory perception of sound // inferred from mutant phenotype /// 0022417 // protein maturation by protein folding // inferred by curator /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031398 // positive regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from direct assay /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0042048 // olfactory behavior // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043069 // negative regulation of programmed cell death // inferred from mutant phenotype /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0043524 // negative regulation of neuron apoptotic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045862 // positive regulation of proteolysis // inferred from sequence or structural similarity /// 0045927 // positive regulation of growth // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050877 // neurological system process // inferred from mutant phenotype /// 0051247 // positive regulation of protein metabolic process // inferred from direct assay /// 0051928 // positive regulation of calcium ion transport // inferred from direct assay /// 0055074 // calcium ion homeostasis // inferred from direct assay /// 0070845 // polyubiquitinated misfolded protein transport // inferred from sequence or structural similarity /// 1902236 // negative regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 2000675 // negative regulation of type B pancreatic cell apoptotic process // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0030425 // dendrite // inferred from sequence or structural similarity 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from sequence or structural similarity /// 0033613 // activating transcription factor binding // inferred from sequence or structural similarity /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from physical interaction 53.65 185.22 3.43 0.01 0.02 -4.49
203405_at 203405_at NM_003720 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003720.1 /DEF=Homo sapiens Down syndrome critical region gene 2 (DSCR2), mRNA. /FEA=mRNA /GEN=DSCR2 /PROD=Down syndrome critical region protein 2 /DB_XREF=gi:4505022 /UG=Hs.5198 Down syndrome critical region gene 2 /FL=gb:BC003619.1 gb:NM_003720.1 NM_003720 proteasome (prosome, macropain) assembly chaperone 1 PSMG1 8624 NM_001261824 /// NM_003720 /// NM_203433 /// NR_049728 0043248 // proteasome assembly // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 57.83 209.69 3.43 0.01 0.02 -4.49
218243_at 218243_at NM_025158 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025158.1 /DEF=Homo sapiens hypothetical protein FLJ22251 (FLJ22251), mRNA. /FEA=mRNA /GEN=FLJ22251 /PROD=hypothetical protein FLJ22251 /DB_XREF=gi:13376756 /UG=Hs.289064 hypothetical protein FLJ22251 /FL=gb:NM_025158.1 NM_025158 RUN and FYVE domain containing 1 RUFY1 80230 NM_001040451 /// NM_001040452 /// NM_025158 /// XM_005265993 /// XM_006714921 /// XM_006714922 /// XR_245276 /// XR_245277 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 41.90 181.47 3.43 0.01 0.02 -4.49
211762_s_at 211762_s_at BC005978 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005978.1 /DEF=Homo sapiens, karyopherin alpha 2 (RAG cohort 1, importin alpha 1), clone MGC:14668, mRNA, complete cds. /FEA=mRNA /PROD=karyopherin alpha 2 (RAG cohort 1, importinalpha 1) /DB_XREF=gi:13543656 /FL=gb:BC005978.1 BC005978 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) KPNA2 3838 NM_002266 0000018 // regulation of DNA recombination // traceable author statement /// 0000085 // mitotic G2 phase // traceable author statement /// 0006259 // DNA metabolic process // traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // inferred from direct assay /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 204.48 810.66 3.43 0.01 0.02 -4.49
211733_x_at 211733_x_at BC005911 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005911.1 /DEF=Homo sapiens, sterol carrier protein 2, clone MGC:14505, mRNA, complete cds. /FEA=mRNA /PROD=sterol carrier protein 2 /DB_XREF=gi:13543502 /FL=gb:BC005911.1 BC005911 sterol carrier protein 2 SCP2 6342 NM_001007098 /// NM_001007099 /// NM_001007100 /// NM_001007250 /// NM_001193599 /// NM_001193600 /// NM_001193617 /// NM_002979 /// XM_005271103 /// XM_005271104 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006699 // bile acid biosynthetic process // traceable author statement /// 0006701 // progesterone biosynthetic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // traceable author statement /// 0015914 // phospholipid transport // inferred from direct assay /// 0032385 // positive regulation of intracellular cholesterol transport // inferred from direct assay /// 0032385 // positive regulation of intracellular cholesterol transport // non-traceable author statement /// 0032959 // inositol trisphosphate biosynthetic process // inferred from direct assay /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // traceable author statement /// 0033559 // unsaturated fatty acid metabolic process // traceable author statement /// 0036109 // alpha-linolenic acid metabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045940 // positive regulation of steroid metabolic process // inferred from direct assay /// 0072659 // protein localization to plasma membrane // inferred from direct assay /// 1901373 // lipid hydroperoxide transport // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0008526 // phosphatidylinositol transporter activity // inferred from direct assay /// 0015485 // cholesterol binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation /// 0033814 // propanoyl-CoA C-acyltransferase activity // inferred from electronic annotation /// 0036042 // long-chain fatty acyl-CoA binding // inferred from direct assay /// 0070538 // oleic acid binding // inferred from direct assay 74.03 230.39 3.43 0.01 0.02 -4.49
201858_s_at 201858_s_at J03223 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J03223.1 /DEF=Human secretory granule proteoglycan peptide core mRNA, complete cds. /FEA=mRNA /GEN=PRG1 /DB_XREF=gi:190419 /UG=Hs.1908 proteoglycan 1, secretory granule /FL=gb:J03223.1 gb:NM_002727.1 J03223 serglycin SRGN 5552 NM_002727 /// NR_036430 0002576 // platelet degranulation // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008626 // granzyme-mediated apoptotic signaling pathway // inferred from direct assay /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0030168 // platelet activation // traceable author statement /// 0030502 // negative regulation of bone mineralization // inferred from direct assay /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0033364 // mast cell secretory granule organization // inferred from sequence or structural similarity /// 0033371 // T cell secretory granule organization // inferred from sequence or structural similarity /// 0033373 // maintenance of protease location in mast cell secretory granule // inferred from sequence or structural similarity /// 0033382 // maintenance of granzyme B location in T cell secretory granule // inferred from sequence or structural similarity /// 0050710 // negative regulation of cytokine secretion // inferred from sequence or structural similarity 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0042588 // zymogen granule // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from electronic annotation -258.72 1181.99 -3.43 0.01 0.02 -4.49
220755_s_at 220755_s_at NM_016947 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016947.1 /DEF=Homo sapiens G8 protein (G8), mRNA. /FEA=mRNA /GEN=G8 /PROD=G8 protein /DB_XREF=gi:8393383 /UG=Hs.109798 G8 protein /FL=gb:NM_016947.1 NM_016947 chromosome 6 open reading frame 48 C6orf48 50854 NM_001040437 /// NM_001040438 /// NM_001287482 /// NM_001287483 /// NM_001287484 /// NM_001287485 /// NM_001287486 /// NM_001287487 /// NM_001287488 /// NM_016947 -134.85 472.52 -3.43 0.01 0.02 -4.49
218336_at 218336_at NM_012394 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012394.2 /DEF=Homo sapiens prefoldin 2 (PFDN2), mRNA. /FEA=mRNA /GEN=PFDN2 /PROD=prefoldin 2 /DB_XREF=gi:12408674 /UG=Hs.298229 prefoldin 2 /FL=gb:NM_012394.2 gb:AF165883.1 gb:AF117237.1 gb:AF151065.1 NM_012394 prefoldin subunit 2 PFDN2 5202 NM_012394 0006457 // protein folding // non-traceable author statement /// 0006457 // protein folding // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016272 // prefoldin complex // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // non-traceable author statement -46.25 361.40 -3.43 0.01 0.02 -4.49
218274_s_at 218274_s_at NM_018089 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018089.1 /DEF=Homo sapiens hypothetical protein FLJ10415 (FLJ10415), mRNA. /FEA=mRNA /GEN=FLJ10415 /PROD=hypothetical protein FLJ10415 /DB_XREF=gi:8922412 /UG=Hs.23788 hypothetical protein FLJ10415 /FL=gb:BC000238.1 gb:NM_018089.1 NM_018089 ankyrin repeat and zinc finger domain containing 1 ANKZF1 55139 NM_001042410 /// NM_001282792 /// NM_018089 /// XM_005246663 /// XR_427096 /// XR_427097 0016020 // membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -31.32 26.06 -3.43 0.01 0.02 -4.49
210756_s_at 210756_s_at AF308601 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF308601.1 /DEF=Homo sapiens NOTCH 2 (N2) mRNA, complete cds. /FEA=mRNA /GEN=N2 /PROD=NOTCH 2 /DB_XREF=gi:11275977 /UG=Hs.8121 Notch (Drosophila) homolog 2 /FL=gb:AF308601.1 AF308601 notch 2 NOTCH2 4853 NM_001200001 /// NM_024408 /// XM_005270901 /// XM_005270902 /// XM_006710667 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001709 // cell fate determination // traceable author statement /// 0001890 // placenta development // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002437 // inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0003184 // pulmonary valve morphogenesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006959 // humoral immune response // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007275 // multicellular organismal development // non-traceable author statement /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009887 // organ morphogenesis // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0016049 // cell growth // inferred from direct assay /// 0019827 // stem cell maintenance // traceable author statement /// 0030097 // hemopoiesis // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0046579 // positive regulation of Ras protein signal transduction // inferred from direct assay /// 0046849 // bone remodeling // inferred from mutant phenotype /// 0050793 // regulation of developmental process // inferred from electronic annotation /// 0060413 // atrial septum morphogenesis // inferred from mutant phenotype /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0072602 // interleukin-4 secretion // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0004872 // receptor activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0038049 // ligand-activated RNA polymerase II transcription factor binding transcription factor activity // traceable author statement -40.50 101.70 -3.42 0.01 0.02 -4.49
217840_at 217840_at NM_016222 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016222.1 /DEF=Homo sapiens DEAD-box protein abstrakt (ABS), mRNA. /FEA=mRNA /GEN=ABS /PROD=DEAD-box protein abstrakt /DB_XREF=gi:7705259 /UG=Hs.274317 DEAD-box protein abstrakt /FL=gb:AF195417.1 gb:NM_016222.1 NM_016222 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 DDX41 51428 NM_016222 /// XM_006714870 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0032479 // regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0035458 // cellular response to interferon-beta // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -60.22 207.96 -3.42 0.01 0.02 -4.49
200860_s_at 200860_s_at BC000779 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000779.1 /DEF=Homo sapiens, Similar to KIAA1007 protein, clone MGC:692, mRNA, complete cds. /FEA=mRNA /PROD=Similar to KIAA1007 protein /DB_XREF=gi:12653966 /UG=Hs.279949 KIAA1007 protein /FL=gb:BC000779.1 gb:AF110778.1 gb:NM_016284.1 BC000779 CCR4-NOT transcription complex, subunit 1 CNOT1 23019 NM_001265612 /// NM_016284 /// NM_206999 /// NR_049763 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010606 // positive regulation of cytoplasmic mRNA processing body assembly // inferred from direct assay /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0033147 // negative regulation of intracellular estrogen receptor signaling pathway // inferred from direct assay /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // inferred from direct assay /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // inferred from mutant phenotype /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from direct assay /// 1900153 // positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from mutant phenotype /// 2000036 // regulation of stem cell maintenance // inferred from mutant phenotype 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030014 // CCR4-NOT complex // inferred from direct assay 0004535 // poly(A)-specific ribonuclease activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from direct assay /// 0042974 // retinoic acid receptor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -84.03 382.14 -3.42 0.01 0.02 -4.49
218244_at 218244_at NM_017948 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017948.1 /DEF=Homo sapiens hypothetical protein FLJ20736 (FLJ20736), mRNA. /FEA=mRNA /GEN=FLJ20736 /PROD=hypothetical protein FLJ20736 /DB_XREF=gi:8923662 /UG=Hs.48712 hypothetical protein FLJ20736 /FL=gb:NM_017948.1 NM_017948 nucleolar protein 8 NOL8 55035 NM_001256394 /// NM_017948 /// NR_046106 /// XM_006717166 /// XM_006717167 /// XM_006717168 /// XM_006717169 /// XM_006717170 /// XM_006717171 /// XM_006717172 /// XM_006717173 0006260 // DNA replication // inferred from mutant phenotype /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 47.62 83.56 3.42 0.01 0.02 -4.49
220122_at 220122_at NM_024717 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024717.1 /DEF=Homo sapiens hypothetical protein FLJ22344 (FLJ22344), mRNA. /FEA=mRNA /GEN=FLJ22344 /PROD=hypothetical protein FLJ22344 /DB_XREF=gi:13376020 /UG=Hs.107716 hypothetical protein FLJ22344 /FL=gb:NM_024717.1 NM_024717 multiple C2 domains, transmembrane 1 MCTP1 79772 NM_001002796 /// NM_024717 /// XM_005272082 /// XM_005272083 /// XM_005272084 /// XM_005272085 /// XM_005272086 /// XM_005272087 /// XM_005272088 /// XM_005272089 /// XM_005272090 /// XM_005272091 /// XM_006714692 /// XM_006714693 /// XM_006714694 /// XR_427720 0019722 // calcium-mediated signaling // non-traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay -212.60 439.10 -3.42 0.01 0.02 -4.49
202235_at 202235_at BF511091 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF511091 /FEA=EST /DB_XREF=gi:11594389 /DB_XREF=est:UI-H-BI4-apn-c-05-0-UI.s1 /CLONE=IMAGE:3087753 /UG=Hs.75231 solute carrier family 16 (monocarboxylic acid transporters), member 1 /FL=gb:NM_003051.1 gb:L31801.1 BF511091 solute carrier family 16 (monocarboxylate transporter), member 1 SLC16A1 6566 NM_001166496 /// NM_003051 0006090 // pyruvate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015718 // monocarboxylic acid transport // traceable author statement /// 0015728 // mevalonate transport // traceable author statement /// 0035873 // lactate transmembrane transport // inferred from electronic annotation /// 0035879 // plasma membrane lactate transport // inferred from sequence or structural similarity /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008028 // monocarboxylic acid transmembrane transporter activity // traceable author statement /// 0015130 // mevalonate transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0097159 // organic cyclic compound binding // inferred from electronic annotation 28.95 39.15 3.42 0.01 0.02 -4.49
208812_x_at 208812_x_at BC004489 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004489.1 /DEF=Homo sapiens, major histocompatibility complex, class I, C, clone MGC:11039, mRNA, complete cds. /FEA=mRNA /PROD=major histocompatibility complex, class I, C /DB_XREF=gi:13325360 /UG=Hs.277477 major histocompatibility complex, class I, C /FL=gb:NM_002117.1 gb:M99388.1 gb:U06487.1 gb:BC002463.1 gb:BC004489.1 gb:D64145.1 gb:D38526.1 gb:D49552.1 gb:D49819.1 gb:M24097.1 gb:M84171.1 gb:M84172.1 gb:M84173.1 gb:M84174.1 gb:M26429.1 gb:M26430.1 gb:M26431.1 gb:U41420.1 gb:U41386.1 gb:D50852.1 gb:D50853.1 gb:D50854.1 gb:D83031.1 gb:U57028.1 gb:U06695.1 gb:U06696.1 gb:M99389.1 gb:M99390.1 gb:M28160.1 gb:U09853.1 gb:AF168611.1 gb:L38251.1 gb:D31817.1 BC004489 major histocompatibility complex, class I, C HLA-C 3107 NM_001243042 /// NM_002117 0001539 // cilium or flagellum-dependent cell motility // non-traceable author statement /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0006955 // immune response // non-traceable author statement /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005858 // axonemal dynein complex // non-traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032395 // MHC class II receptor activity // non-traceable author statement /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0046977 // TAP binding // inferred from direct assay -260.25 782.70 -3.42 0.01 0.02 -4.49
213532_at 213532_at AI797833 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI797833 /FEA=EST /DB_XREF=gi:5363390 /DB_XREF=est:wh79e10.x1 /CLONE=IMAGE:2386986 /UG=Hs.52438 ESTs, Weakly similar to ORF YOR126c S.cerevisiae AI797833 ADAM metallopeptidase domain 17 ADAM17 6868 NM_003183 0001666 // response to hypoxia // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0002446 // neutrophil mediated immunity // inferred by curator /// 0002467 // germinal center formation // inferred from sequence or structural similarity /// 0002690 // positive regulation of leukocyte chemotaxis // inferred by curator /// 0006508 // proteolysis // inferred from direct assay /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006509 // membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0007155 // cell adhesion // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007220 // Notch receptor processing // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010820 // positive regulation of T cell chemotaxis // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0030574 // collagen catabolic process // traceable author statement /// 0031293 // membrane protein intracellular domain proteolysis // traceable author statement /// 0031659 // positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0032717 // negative regulation of interleukin-8 production // inferred from mutant phenotype /// 0032722 // positive regulation of chemokine production // inferred from mutant phenotype /// 0033025 // regulation of mast cell apoptotic process // inferred from sequence or structural similarity /// 0033077 // T cell differentiation in thymus // inferred from sequence or structural similarity /// 0033627 // cell adhesion mediated by integrin // inferred from direct assay /// 0035313 // wound healing, spreading of epidermal cells // inferred from expression pattern /// 0035625 // epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0042493 // response to drug // inferred from sequence or structural similarity /// 0045741 // positive regulation of epidermal growth factor-activated receptor activity // inferred from direct assay /// 0045741 // positive regulation of epidermal growth factor-activated receptor activity // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048536 // spleen development // inferred from sequence or structural similarity /// 0048870 // cell motility // inferred from sequence or structural similarity /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // inferred from direct assay /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0051272 // positive regulation of cellular component movement // inferred from sequence or structural similarity /// 0055099 // response to high density lipoprotein particle // inferred from direct assay /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0005112 // Notch binding // inferred from direct assay /// 0005138 // interleukin-6 receptor binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // inferred from mutant phenotype /// 0008237 // metallopeptidase activity // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -50.40 189.38 -3.42 0.01 0.02 -4.49
221818_at 221818_at BF446693 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF446693 /FEA=EST /DB_XREF=gi:11511831 /DB_XREF=est:7q90g09.x1 /CLONE=IMAGE:3705785 /UG=Hs.6259 KIAA1698 protein BF446693 integrator complex subunit 5 INTS5 80789 NM_030628 0016180 // snRNA processing // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032039 // integrator complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 31.92 52.16 3.42 0.01 0.02 -4.49
218142_s_at 218142_s_at NM_016302 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016302.1 /DEF=Homo sapiens protein x 0001 (LOC51185), mRNA. /FEA=mRNA /GEN=LOC51185 /PROD=protein x 0001 /DB_XREF=gi:10047097 /UG=Hs.18925 protein x 0001 /FL=gb:NM_016302.1 gb:AF117230.1 NM_016302 cereblon CRBN 51185 NM_001173482 /// NM_016302 /// XM_005265202 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0032463 // negative regulation of protein homooligomerization // inferred from electronic annotation /// 0034766 // negative regulation of ion transmembrane transport // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0090073 // positive regulation of protein homodimerization activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031464 // Cul4A-RING E3 ubiquitin ligase complex // inferred from direct assay 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -42.12 85.01 -3.42 0.01 0.02 -4.49
212918_at 212918_at AI962943 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI962943 /FEA=EST /DB_XREF=gi:5755656 /DB_XREF=est:wt25b06.x1 /CLONE=IMAGE:2508467 /UG=Hs.192570 hypothetical protein FLJ22028 AI962943 RecQ helicase-like RECQL 5965 NM_002907 /// NM_032941 /// XM_005253461 /// XM_005253462 /// XM_005253463 /// XM_005253464 /// XM_006719133 0000733 // DNA strand renaturation // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from direct assay /// 0004003 // ATP-dependent DNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036310 // annealing helicase activity // inferred from direct assay /// 0043140 // ATP-dependent 3'-5' DNA helicase activity // inferred from electronic annotation 50.30 166.45 3.42 0.01 0.02 -4.49
202052_s_at 202052_s_at NM_015577 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015577.1 /DEF=Homo sapiens novel retinal pigment epithelial gene (NORPEG), mRNA. /FEA=mRNA /GEN=NORPEG /PROD=DKFZP564G013 protein /DB_XREF=gi:13470085 /UG=Hs.15165 novel retinal pigment epithelial gene /FL=gb:NM_015577.1 gb:AF155135.1 NM_015577 retinoic acid induced 14 RAI14 26064 NM_001145520 /// NM_001145521 /// NM_001145522 /// NM_001145523 /// NM_001145525 /// NM_015577 /// XM_006714469 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -171.80 980.77 -3.41 0.01 0.02 -4.49
214271_x_at 214271_x_at AA281332 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA281332 /FEA=EST /DB_XREF=gi:1924013 /DB_XREF=est:zs93h10.s1 /CLONE=IMAGE:705091 /UG=Hs.182979 ribosomal protein L12 AA281332 ribosomal protein L12 RPL12 6136 NM_000976 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -431.80 2113.70 -3.41 0.01 0.02 -4.49
212428_at 212428_at AW001101 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW001101 /FEA=EST /DB_XREF=gi:5848017 /DB_XREF=est:wu24c05.x1 /CLONE=IMAGE:2520968 /UG=Hs.3852 KIAA0368 protein AW001101 KIAA0368 KIAA0368 23392 NM_001080398 /// XM_005251850 /// XM_005251851 /// XM_005251852 /// XM_005251853 /// XM_005251854 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype 0000502 // proteasome complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030134 // ER to Golgi transport vesicle // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation -39.03 163.99 -3.41 0.01 0.02 -4.49
209279_s_at 209279_s_at BC000245 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000245.1 /DEF=Homo sapiens, NAD(P) dependent steroid dehydrogenase-like; H105e3, clone MGC:848, mRNA, complete cds. /FEA=mRNA /PROD=NAD(P) dependent steroid dehydrogenase-like;H105e3 /DB_XREF=gi:12652968 /UG=Hs.57698 NAD(P) dependent steroid dehydrogenase-like; H105e3 /FL=gb:BC000245.1 gb:U47105.2 gb:NM_015922.1 BC000245 NAD(P) dependent steroid dehydrogenase-like NSDHL 50814 NM_001129765 /// NM_015922 /// XM_006724824 0001942 // hair follicle development // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045226 // extracellular polysaccharide biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0008831 // dTDP-4-dehydrorhamnose reductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0047012 // sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 31.17 60.79 3.41 0.01 0.02 -4.49
204589_at 204589_at NM_014840 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014840.1 /DEF=Homo sapiens KIAA0537 gene product (KIAA0537), mRNA. /FEA=mRNA /GEN=KIAA0537 /PROD=KIAA0537 gene product /DB_XREF=gi:7662169 /UG=Hs.200598 KIAA0537 gene product /FL=gb:AB011109.1 gb:NM_014840.1 NM_014840 NUAK family, SNF1-like kinase, 1 NUAK1 9891 NM_014840 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from direct assay /// 0035507 // regulation of myosin-light-chain-phosphatase activity // inferred from direct assay /// 0042127 // regulation of cell proliferation // traceable author statement /// 2000772 // regulation of cellular senescence // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // inferred from physical interaction /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 89.27 244.89 3.41 0.01 0.02 -4.49
202941_at 202941_at NM_021074 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021074.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) flavoprotein 2 (24kD) (NDUFV2), mRNA. /FEA=mRNA /GEN=NDUFV2 /PROD=NADH dehydrogenase (ubiquinone) flavoprotein 2(24kD) /DB_XREF=gi:10835024 /UG=Hs.51299 NADH dehydrogenase (ubiquinone) flavoprotein 2 (24kD) /FL=gb:NM_021074.1 gb:BC001632.1 gb:M22538.1 NM_021074 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa NDUFV2 4729 NM_021074 /// XR_243808 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from mutant phenotype /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0007399 // nervous system development // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048738 // cardiac muscle tissue development // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // inferred from mutant phenotype /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0045272 // plasma membrane respiratory chain complex I // not recorded /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from mutant phenotype /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0009055 // electron carrier activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation -52.85 365.65 -3.41 0.01 0.02 -4.49
211665_s_at 211665_s_at L20686 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L20686.1 /DEF=Homo sapiens guanine nucleotide releasing factor (SOS2) mRNA, complete cds. /FEA=mRNA /GEN=SOS2 /PROD=guanine nucleotide releasing factor /DB_XREF=gi:1220367 /FL=gb:L20686.1 L20686 son of sevenless homolog 2 (Drosophila) SOS2 6655 NM_006939 /// XM_005268021 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051057 // positive regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // non-traceable author statement /// 0005088 // Ras guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -33.03 70.51 -3.41 0.01 0.02 -4.49
200881_s_at 200881_s_at NM_001539 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001539.1 /DEF=Homo sapiens heat shock protein, DNAJ-like 2 (HSJ2), mRNA. /FEA=mRNA /GEN=HSJ2 /PROD=heat shock protein, DNAJ-like 2 /DB_XREF=gi:4504510 /UG=Hs.94 DnaJ (Hsp40) homolog, subfamily A, member 1 /FL=gb:D13388.1 gb:L08069.1 gb:NM_001539.1 NM_001539 DnaJ (Hsp40) homolog, subfamily A, member 1 DNAJA1 3301 NM_001539 0006457 // protein folding // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043508 // negative regulation of JUN kinase activity // inferred from mutant phenotype /// 0051223 // regulation of protein transport // inferred from direct assay /// 0070585 // protein localization to mitochondrion // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from physical interaction -101.72 920.04 -3.41 0.01 0.02 -4.49
218883_s_at 218883_s_at NM_024629 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024629.1 /DEF=Homo sapiens hypothetical protein FLJ23468 (FLJ23468), mRNA. /FEA=mRNA /GEN=FLJ23468 /PROD=hypothetical protein FLJ23468 /DB_XREF=gi:13375855 /UG=Hs.38178 hypothetical protein FLJ23468 /FL=gb:NM_024629.1 NM_024629 centromere protein U CENPU 79682 NM_024629 /// NR_104593 /// XM_005263218 0000278 // mitotic cell cycle // traceable author statement /// 0006334 // nucleosome assembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0034080 // centromere-specific nucleosome assembly // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from electronic annotation -69.70 209.80 -3.41 0.01 0.02 -4.49
219798_s_at 219798_s_at NM_019606 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019606.1 /DEF=Homo sapiens hypothetical protein FLJ20257 (FLJ20257), mRNA. /FEA=mRNA /GEN=FLJ20257 /PROD=hypothetical protein FLJ20257 /DB_XREF=gi:9624989 /UG=Hs.178011 hypothetical protein FLJ20257 /FL=gb:NM_019606.1 NM_019606 methylphosphate capping enzyme MEPCE 56257 NM_001194990 /// NM_001194991 /// NM_001194992 /// NM_019606 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001510 // RNA methylation // inferred from direct assay /// 0016073 // snRNA metabolic process // inferred from direct assay /// 0032259 // methylation // inferred from electronic annotation /// 0035562 // negative regulation of chromatin binding // inferred from electronic annotation /// 0040031 // snRNA modification // inferred from direct assay /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008173 // RNA methyltransferase activity // inferred from direct assay /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 58.62 124.44 3.40 0.01 0.02 -4.49
203870_at 203870_at BE856374 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE856374 /FEA=EST /DB_XREF=gi:10369335 /DB_XREF=est:7f93f06.x1 /CLONE=IMAGE:3304547 /UG=Hs.109268 hypothetical protein FLJ12552 /FL=gb:NM_022832.1 BE856374 ubiquitin specific peptidase 46 USP46 64854 NM_001134223 /// NM_001286767 /// NM_001286768 /// NM_022832 0001662 // behavioral fear response // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // inferred from sequence or structural similarity /// 0016579 // protein deubiquitination // inferred from direct assay /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from sequence or structural similarity 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation 40.03 61.71 3.40 0.01 0.02 -4.49
218341_at 218341_at NM_024664 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024664.1 /DEF=Homo sapiens hypothetical protein FLJ11838 (FLJ11838), mRNA. /FEA=mRNA /GEN=FLJ11838 /PROD=hypothetical protein FLJ11838 /DB_XREF=gi:13375918 /UG=Hs.72531 hypothetical protein FLJ11838 /FL=gb:NM_024664.1 NM_024664 phosphopantothenoylcysteine synthetase PPCS 79717 NM_001077447 /// NM_001287506 /// NM_001287507 /// NM_001287508 /// NM_001287509 /// NM_001287510 /// NM_001287511 /// NM_024664 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0009108 // coenzyme biosynthetic process // traceable author statement /// 0015937 // coenzyme A biosynthetic process // inferred from direct assay /// 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation /// 0015939 // pantothenate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004632 // phosphopantothenate--cysteine ligase activity // inferred from direct assay /// 0004632 // phosphopantothenate--cysteine ligase activity // traceable author statement /// 0016874 // ligase activity // inferred from electronic annotation 31.40 43.70 3.40 0.01 0.02 -4.49
201041_s_at 201041_s_at NM_004417 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004417.2 /DEF=Homo sapiens dual specificity phosphatase 1 (DUSP1), mRNA. /FEA=mRNA /GEN=DUSP1 /PROD=dual specificity phosphatase 1 /DB_XREF=gi:7108342 /UG=Hs.171695 dual specificity phosphatase 1 /FL=gb:NM_004417.2 NM_004417 dual specificity phosphatase 1 DUSP1 1843 NM_004417 0000188 // inactivation of MAPK activity // inferred from sequence or structural similarity /// 0001706 // endoderm formation // not recorded /// 0006470 // protein dephosphorylation // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from sequence or structural similarity /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0035970 // peptidyl-threonine dephosphorylation // inferred from sequence or structural similarity /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // not recorded /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0043409 // negative regulation of MAPK cascade // inferred from sequence or structural similarity /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051447 // negative regulation of meiotic cell cycle // inferred from sequence or structural similarity /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0071850 // mitotic cell cycle arrest // inferred from sequence or structural similarity /// 0090266 // regulation of mitotic cell cycle spindle assembly checkpoint // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // /// 0005737 // cytoplasm // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0008330 // protein tyrosine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from sequence or structural similarity -200.15 608.12 -3.40 0.01 0.03 -4.49
202821_s_at 202821_s_at AL044018 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL044018 /FEA=EST /DB_XREF=gi:5935931 /DB_XREF=est:DKFZp434J1028_s1 /CLONE=DKFZp434J1028 /UG=Hs.180398 LIM domain-containing preferred translocation partner in lipoma /FL=gb:NM_005578.1 AL044018 LIM domain containing preferred translocation partner in lipoma LPP 4026 NM_001167671 /// NM_001167672 /// NM_005578 /// XM_005247444 /// XM_005247445 /// XM_005247446 /// XM_005247447 /// XM_005247448 /// XM_005247450 /// XM_005247451 /// XM_005247453 /// XM_006713637 0007155 // cell adhesion // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -45.63 76.96 -3.40 0.01 0.03 -4.49
201154_x_at 201154_x_at NM_000968 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000968.1 /DEF=Homo sapiens ribosomal protein L4 (RPL4), mRNA. /FEA=mRNA /GEN=RPL4 /PROD=ribosomal protein L4 /DB_XREF=gi:4506652 /UG=Hs.286 ribosomal protein L4 /FL=gb:BC001365.1 gb:L20868.1 gb:D23660.1 gb:NM_000968.1 NM_000968 ribosomal protein L4 /// small nucleolar RNA, C/D box 16 /// small nucleolar RNA, C/D box 18A /// small nucleolar RNA, C/D box 18B /// small nucleolar RNA, C/D box 18C RPL4 /// SNORD16 /// SNORD18A /// SNORD18B /// SNORD18C 6124 /// 595097 /// 595098 /// 595099 /// 595100 NM_000968 /// NR_002440 /// NR_002441 /// NR_002442 /// NR_002443 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -763.17 2700.19 -3.39 0.01 0.03 -4.49
203680_at 203680_at NM_002736 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002736.1 /DEF=Homo sapiens protein kinase, cAMP-dependent, regulatory, type II, beta (PRKAR2B), mRNA. /FEA=mRNA /GEN=PRKAR2B /PROD=protein kinase, cAMP-dependent, regulatory, typeII, beta /DB_XREF=gi:4506064 /UG=Hs.77439 protein kinase, cAMP-dependent, regulatory, type II, beta /FL=gb:M31158.1 gb:NM_002736.1 NM_002736 protein kinase, cAMP-dependent, regulatory, type II, beta PRKAR2B 5577 NM_002736 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007612 // learning // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0097332 // response to antipsychotic drug // inferred from electronic annotation /// 0097338 // response to clozapine // inferred from electronic annotation /// 2000480 // negative regulation of cAMP-dependent protein kinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction 74.45 216.30 3.39 0.01 0.03 -4.49
211787_s_at 211787_s_at BC006210 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006210.1 /DEF=Homo sapiens, Similar to eukaryotic translation initiation factor 4A, isoform 1, clone MGC:8484, mRNA, complete cds. /FEA=mRNA /PROD=Similar to eukaryotic translation initiationfactor 4A, isoform 1 /DB_XREF=gi:13623224 /FL=gb:BC006210.1 BC006210 eukaryotic translation initiation factor 4A1 /// uncharacterized LOC101928634 /// SENP3-EIF4A1 readthrough (NMD candidate) /// small nucleolar RNA, H/ACA box 48 /// small nucleolar RNA, H/ACA box 67 /// small nucleolar RNA, C/D box 10 EIF4A1 /// LOC101928634 /// SENP3-EIF4A1 /// SNORA48 /// SNORA67 /// SNORD10 1973 /// 26781 /// 652965 /// 652966 /// 100533955 /// 101928634 NM_001204510 /// NM_001416 /// NR_002604 /// NR_002912 /// NR_002918 /// NR_037926 /// XR_244579 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031100 // organ regeneration // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000339 // RNA cap binding // traceable author statement /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003729 // mRNA binding // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004386 // helicase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -443.90 2231.03 -3.39 0.01 0.03 -4.49
219161_s_at 219161_s_at NM_016951 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016951.2 /DEF=Homo sapiens transmembrane proteolipid (HSPC224), mRNA. /FEA=mRNA /GEN=HSPC224 /PROD=transmembrane proteolipid /DB_XREF=gi:10092593 /UG=Hs.15159 chemokine-like factor, alternatively spliced /FL=gb:NM_016951.2 gb:BC004380.1 gb:AF057306.1 gb:AF151058.1 gb:AF135380.2 NM_016951 chemokine-like factor /// CKLF-CMTM1 readthrough CKLF /// CKLF-CMTM1 51192 /// 100529251 NM_001040138 /// NM_001040139 /// NM_001202509 /// NM_001204098 /// NM_001204099 /// NM_016326 /// NM_016951 /// NM_181640 /// NM_181641 0006935 // chemotaxis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030595 // leukocyte chemotaxis // inferred from electronic annotation /// 0032940 // secretion by cell // inferred from direct assay /// 0048246 // macrophage chemotaxis // inferred from direct assay /// 0048247 // lymphocyte chemotaxis // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from direct assay 46.95 101.67 3.39 0.01 0.03 -4.49
217742_s_at 217742_s_at NM_016628 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016628.1 /DEF=Homo sapiens hypothetical protein (LOC51322), mRNA. /FEA=mRNA /GEN=LOC51322 /PROD=hypothetical protein /DB_XREF=gi:7706169 /UG=Hs.70333 hypothetical protein /FL=gb:BC004258.1 gb:AF208858.1 gb:NM_016628.1 NM_016628 WW domain containing adaptor with coiled-coil WAC 51322 NM_016628 /// NM_100264 /// NM_100486 /// NR_024557 /// XM_005252454 /// XM_005252457 /// XM_005252459 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0010390 // histone monoubiquitination // inferred from mutant phenotype /// 0016239 // positive regulation of macroautophagy // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0044783 // G1 DNA damage checkpoint // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0071894 // histone H2B conserved C-terminal lysine ubiquitination // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0000993 // RNA polymerase II core binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -162.55 515.15 -3.39 0.01 0.03 -4.49
213653_at 213653_at AW069290 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW069290 /FEA=EST /DB_XREF=gi:6024288 /DB_XREF=est:cr43g01.x1 /CLONE=HBMSC_cr43g01 /UG=Hs.268149 putative methyltransferase AW069290 methyltransferase like 3 METTL3 56339 NM_019852 /// XM_006720206 0001510 // RNA methylation // inferred from mutant phenotype /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0019827 // stem cell maintenance // inferred from sequence or structural similarity /// 0032259 // methylation // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0061157 // mRNA destabilization // inferred from sequence or structural similarity /// 0080009 // mRNA methylation // inferred from direct assay /// 0080009 // mRNA methylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016607 // nuclear speck // inferred from direct assay /// 0036396 // MIS complex // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016422 // mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity // inferred from direct assay /// 0016422 // mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation 37.13 30.71 3.39 0.01 0.03 -4.49
201656_at 201656_at NM_000210 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000210.1 /DEF=Homo sapiens integrin, alpha 6 (ITGA6), mRNA. /FEA=mRNA /GEN=ITGA6 /PROD=integrin alpha chain, alpha 6 /DB_XREF=gi:4557674 /UG=Hs.227730 integrin, alpha 6 /FL=gb:NM_000210.1 NM_000210 integrin, alpha 6 ITGA6 3655 NM_000210 /// NM_001079818 /// XM_006712510 /// XM_006712511 0007044 // cell-substrate junction assembly // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0031581 // hemidesmosome assembly // traceable author statement /// 0031589 // cell-substrate adhesion // inferred from mutant phenotype /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from genetic interaction /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005604 // basement membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0034676 // integrin alpha6-beta4 complex // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043236 // laminin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 64.55 266.52 3.39 0.01 0.03 -4.49
208659_at 208659_at AF034607 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF034607.1 /DEF=Homo sapiens chloride channel ABP mRNA, complete cds. /FEA=mRNA /PROD=chloride channel ABP /DB_XREF=gi:4426566 /UG=Hs.74276 chloride intracellular channel 1 /FL=gb:U93205.1 gb:AF034607.1 gb:AF109197.1 gb:NM_001288.2 AF034607 chloride intracellular channel 1 CLIC1 1192 NM_001287593 /// NM_001287594 /// NM_001288 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0034765 // regulation of ion transmembrane transport // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 1902476 // chloride transmembrane transport // inferred from direct assay /// 1902476 // chloride transmembrane transport // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005903 // brush border // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 178.48 944.84 3.39 0.01 0.03 -4.49
201088_at 201088_at NM_002266 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002266.1 /DEF=Homo sapiens karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2), mRNA. /FEA=mRNA /GEN=KPNA2 /PROD=karyopherin alpha 2 /DB_XREF=gi:4504896 /UG=Hs.159557 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) /FL=gb:NM_002266.1 gb:U09559.1 gb:U28386.1 NM_002266 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) KPNA2 3838 NM_002266 0000018 // regulation of DNA recombination // traceable author statement /// 0000085 // mitotic G2 phase // traceable author statement /// 0006259 // DNA metabolic process // traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // inferred from direct assay /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 194.85 827.60 3.39 0.01 0.03 -4.49
204702_s_at 204702_s_at NM_004289 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004289.3 /DEF=Homo sapiens nuclear factor (erythroid-derived 2)-like 3 (NFE2L3), mRNA. /FEA=mRNA /GEN=NFE2L3 /PROD=nuclear factor (erythroid-derived 2)-like 3 /DB_XREF=gi:5731346 /UG=Hs.22900 nuclear factor (erythroid-derived 2)-like 3 /FL=gb:AF133059.1 gb:AB010812.1 gb:NM_004289.3 gb:AF134891.1 NM_004289 nuclear factor, erythroid 2-like 3 NFE2L3 9603 NM_004289 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -44.67 103.21 -3.39 0.01 0.03 -4.49
213812_s_at 213812_s_at AK024748 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024748.1 /DEF=Homo sapiens cDNA: FLJ21095 fis, clone CAS03846. /FEA=mRNA /DB_XREF=gi:10437113 /UG=Hs.108708 calciumcalmodulin-dependent protein kinase kinase 2, beta AK024748 calcium/calmodulin-dependent protein kinase kinase 2, beta CAMKK2 10645 NM_001270485 /// NM_001270486 /// NM_006549 /// NM_153499 /// NM_153500 /// NM_172214 /// NM_172215 /// NM_172216 /// NM_172226 /// XM_005253822 /// XM_005253823 /// XM_005253824 0000165 // MAPK cascade // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement /// 0045859 // regulation of protein kinase activity // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay 0005622 // intracellular // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005516 // calmodulin binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -113.22 308.34 -3.38 0.01 0.03 -4.49
212651_at 212651_at AB018283 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB018283.2 /DEF=Homo sapiens mRNA for KIAA0740 protein, partial cds. /FEA=mRNA /GEN=KIAA0740 /PROD=KIAA0740 protein /DB_XREF=gi:6705974 /UG=Hs.15099 KIAA0740 gene product AB018283 Rho-related BTB domain containing 1 RHOBTB1 9886 NM_001242359 /// NM_014836 /// NR_024554 /// NR_024555 /// XM_006718084 /// XM_006718085 /// XM_006718086 /// XM_006718087 /// XM_006718088 /// XM_006718089 /// XR_428729 /// XR_428730 /// XR_428731 /// XR_428732 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 37.30 53.30 3.38 0.01 0.03 -4.49
204837_at 204837_at AL080178 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080178.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434K171 (from clone DKFZp434K171); partial cds. /FEA=mRNA /GEN=DKFZp434K171 /PROD=hypothetical protein /DB_XREF=gi:5262652 /UG=Hs.27194 DKFZP434K171 protein /FL=gb:NM_015458.1 AL080178 myotubularin related protein 9 MTMR9 66036 NM_015458 /// XM_005272396 0016311 // dephosphorylation // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation 45.95 220.55 3.38 0.01 0.03 -4.49
222163_s_at 222163_s_at BE890973 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE890973 /FEA=EST /DB_XREF=gi:10349835 /DB_XREF=est:601431962F1 /CLONE=IMAGE:3917319 /UG=Hs.5555 hypothetical protein MGC5347 BE890973 spermatogenesis associated 5-like 1 SPATA5L1 79029 NM_024063 /// NR_027635 /// XM_005254657 /// XR_243126 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0070842 // aggresome assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0031593 // polyubiquitin binding // inferred from electronic annotation 38.15 61.70 3.38 0.01 0.03 -4.49
212818_s_at 212818_s_at AF055024 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF055024.1 /DEF=Homo sapiens clone 24763 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3005752 /UG=Hs.153489 ASB-1 protein /FL=gb:AF156777.1 gb:NM_016114.1 AF055024 ankyrin repeat and SOCS box containing 1 ASB1 51665 NM_001040445 /// NM_016114 /// XM_005246080 /// XR_241235 /// XR_241236 /// XR_241237 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030539 // male genitalia development // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042036 // negative regulation of cytokine biosynthetic process // non-traceable author statement 0005622 // intracellular // inferred by curator 0005515 // protein binding // inferred from electronic annotation 38.42 75.11 3.38 0.01 0.03 -4.49
54970_at 54970_at AA868332 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA868332:ak40h05.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-1408473 /clone_end=3' /gb=AA868332 /gi=2963777 /ug=Hs.77978 /len=481 AA868332 zinc finger, MIZ-type containing 2 ZMIZ2 83637 NM_031449 /// NM_174929 /// XM_005249866 /// XM_005249867 /// XM_005249868 /// XM_005249869 /// XM_005249870 /// XM_005249871 /// XM_005249872 /// XM_005249873 /// XM_005249874 /// XM_005249875 /// XM_006715787 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0043596 // nuclear replication fork // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 54.70 284.40 3.37 0.01 0.03 -4.49
218989_x_at 218989_x_at NM_022902 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022902.1 /DEF=Homo sapiens hypothetical protein FLJ12496 (FLJ12496), mRNA. /FEA=mRNA /GEN=FLJ12496 /PROD=hypothetical protein FLJ12496 /DB_XREF=gi:12597642 /UG=Hs.129445 hypothetical protein FLJ12496 /FL=gb:NM_022902.1 NM_022902 solute carrier family 30 (zinc transporter), member 5 SLC30A5 64924 NM_001251969 /// NM_022902 /// NM_024055 /// XM_005248569 /// XM_006714672 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // inferred from direct assay /// 0006829 // zinc ion transport // inferred from direct assay /// 0006882 // cellular zinc ion homeostasis // inferred from direct assay /// 0010043 // response to zinc ion // inferred from direct assay /// 0010155 // regulation of proton transport // non-traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0071577 // zinc ion transmembrane transport // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030141 // secretory granule // inferred from direct assay /// 0030667 // secretory granule membrane // traceable author statement 0005385 // zinc ion transmembrane transporter activity // inferred from direct assay /// 0008270 // zinc ion binding // non-traceable author statement /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 36.03 96.79 3.37 0.01 0.03 -4.49
200037_s_at 200037_s_at NM_016587 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016587.1 /DEF=Homo sapiens heterochromatin-like protein 1 (HECH), mRNA. /FEA=mRNA /GEN=HECH /PROD=heterochromatin-like protein 1 /DB_XREF=gi:7705406 /UG=Hs.278554 heterochromatin-like protein 1 /FL=gb:AF136630.1 gb:NM_016587.1 NM_016587 chromobox homolog 3 CBX3 11335 NM_007276 /// NM_016587 /// XM_005249611 /// XM_005249612 0006338 // chromatin remodeling // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0048511 // rhythmic process // inferred from electronic annotation 0000779 // condensed chromosome, centromeric region // inferred from sequence or structural similarity /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005637 // nuclear inner membrane // non-traceable author statement /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from direct assay /// 0005819 // spindle // inferred from direct assay /// 0031618 // nuclear centromeric heterochromatin // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 1990226 // histone methyltransferase binding // inferred from physical interaction 157.27 580.99 3.37 0.01 0.03 -4.49
202349_at 202349_at NM_000113 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000113.1 /DEF=Homo sapiens dystonia 1, torsion (autosomal dominant; torsin A) (DYT1), mRNA. /FEA=mRNA /GEN=DYT1 /PROD=torsin A /DB_XREF=gi:4557540 /UG=Hs.19261 dystonia 1, torsion (autosomal dominant; torsin A) /FL=gb:BC000674.1 gb:AF007871.1 gb:NM_000113.1 NM_000113 torsin family 1, member A (torsin A) TOR1A 1861 NM_000113 0000338 // protein deneddylation // inferred from mutant phenotype /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006457 // protein folding // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0006996 // organelle organization // inferred from sequence or structural similarity /// 0006998 // nuclear envelope organization // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0034504 // protein localization to nucleus // inferred from mutant phenotype /// 0034504 // protein localization to nucleus // inferred from sequence or structural similarity /// 0044319 // wound healing, spreading of cells // inferred from sequence or structural similarity /// 0045104 // intermediate filament cytoskeleton organization // inferred from mutant phenotype /// 0048489 // synaptic vesicle transport // inferred from mutant phenotype /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051584 // regulation of dopamine uptake involved in synaptic transmission // inferred from direct assay /// 0061077 // chaperone-mediated protein folding // inferred from direct assay /// 0071712 // ER-associated misfolded protein catabolic process // inferred from sequence or structural similarity /// 0071763 // nuclear membrane organization // inferred from sequence or structural similarity /// 0072321 // chaperone-mediated protein transport // inferred from direct assay /// 1900244 // positive regulation of synaptic vesicle endocytosis // inferred from mutant phenotype /// 2000008 // regulation of protein localization to cell surface // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030141 // secretory granule // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0042406 // extrinsic component of endoplasmic reticulum membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0019894 // kinesin binding // inferred from physical interaction /// 0051082 // unfolded protein binding // traceable author statement 29.40 142.80 3.37 0.01 0.03 -4.49
217933_s_at 217933_s_at NM_015907 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015907.1 /DEF=Homo sapiens leucine aminopeptidase (LOC51056), mRNA. /FEA=mRNA /GEN=LOC51056 /PROD=leucine aminopeptidase /DB_XREF=gi:7705687 /UG=Hs.182579 leucine aminopeptidase /FL=gb:AF061738.1 gb:NM_015907.1 NM_015907 leucine aminopeptidase 3 LAP3 51056 NM_015907 0006508 // proteolysis // non-traceable author statement /// 0019538 // protein metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // non-traceable author statement /// 0004177 // aminopeptidase activity // non-traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // non-traceable author statement /// 0008270 // zinc ion binding // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -53.27 345.59 -3.37 0.01 0.03 -4.49
200691_s_at 200691_s_at BC000478 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000478.1 /DEF=Homo sapiens, heat shock 70kD protein 9B (mortalin-2), clone MGC:8684, mRNA, complete cds. /FEA=mRNA /PROD=heat shock 70kD protein 9B (mortalin-2) /DB_XREF=gi:12653414 /UG=Hs.3069 heat shock 70kD protein 9B (mortalin-2) /FL=gb:BC000478.1 gb:L15189.1 gb:NM_004134.1 BC000478 heat shock 70kDa protein 9 (mortalin) HSPA9 3313 NM_004134 0000902 // cell morphogenesis // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement -131.45 488.90 -3.37 0.01 0.03 -4.49
221543_s_at 221543_s_at AL442077 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL442077.1 /DEF=Homo sapiens mRNA; cDNA DKFZp667H242 (from clone DKFZp667H242); complete cds. /FEA=mRNA /GEN=DKFZp667H242 /PROD=hypothetical protein /DB_XREF=gi:10241715 /UG=Hs.125849 chromosome 8 open reading frame 2 /FL=gb:AL442077.1 gb:NM_007175.1 AL442077 ER lipid raft associated 2 ERLIN2 11160 NM_001003790 /// NM_001003791 /// NM_007175 /// XM_005273391 /// XM_005273392 /// XM_005273393 /// XM_006716280 0008219 // cell death // inferred from electronic annotation /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 31.68 94.46 3.36 0.01 0.03 -4.49
200764_s_at 200764_s_at AI826881 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI826881 /FEA=EST /DB_XREF=gi:5447552 /DB_XREF=est:wk75f03.x1 /CLONE=IMAGE:2421245 /UG=Hs.178452 catenin (cadherin-associated protein), alpha 1 (102kD) /FL=gb:L23805.1 gb:NM_001903.1 AI826881 catenin (cadherin-associated protein), alpha 1, 102kDa CTNNA1 1495 NM_001290307 /// NM_001290309 /// NM_001290310 /// NM_001290312 /// NM_001903 /// XM_005271898 /// XM_005271899 /// XM_006714536 0001541 // ovarian follicle development // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016264 // gap junction assembly // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043297 // apical junction assembly // non-traceable author statement /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0050808 // synapse organization // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // inferred from direct assay /// 0090136 // epithelial cell-cell adhesion // inferred from electronic annotation /// 2000146 // negative regulation of cell motility // inferred from electronic annotation /// 2001045 // negative regulation of integrin-mediated signaling pathway // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005915 // zonula adherens // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016342 // catenin complex // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0017166 // vinculin binding // inferred from physical interaction /// 0042043 // neurexin family protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045295 // gamma-catenin binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from electronic annotation -112.83 457.56 -3.36 0.01 0.03 -4.49
219558_at 219558_at NM_024524 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024524.1 /DEF=Homo sapiens hypothetical protein FLJ20986 (FLJ20986), mRNA. /FEA=mRNA /GEN=FLJ20986 /PROD=hypothetical protein FLJ20986 /DB_XREF=gi:13375667 /UG=Hs.324507 hypothetical protein FLJ20986 /FL=gb:NM_024524.1 NM_024524 ATPase type 13A3 ATP13A3 79572 NM_024524 /// XM_005269357 /// XM_005269358 /// XM_005269360 /// XM_006713742 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0019829 // cation-transporting ATPase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -67.78 147.19 -3.36 0.01 0.03 -4.49
208690_s_at 208690_s_at BC000915 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000915.1 /DEF=Homo sapiens, Similar to LIM protein, clone MGC:5344, mRNA, complete cds. /FEA=mRNA /PROD=Similar to LIM protein /DB_XREF=gi:12654194 /UG=Hs.75807 PDZ and LIM domain 1 (elfin) /FL=gb:BC000915.1 BC000915 PDZ and LIM domain 1 PDLIM1 9124 NM_020992 0001666 // response to hypoxia // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006979 // response to oxidative stress // traceable author statement 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -179.52 680.71 -3.36 0.01 0.03 -4.49
201417_at 201417_at AL136179 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL136179 /DEF=Human DNA sequence from clone RP3-322L4 on chromosome 6. Contains the SOX4 gene for SRY (sex determining region Y)-box 4, a pseudogene similar to predicted fly, worm and yeast genes, ESTs, STSs, GSSs and four CpG islands /FEA=mRNA /DB_XREF=gi:8649149 /UG=Hs.83484 SRY (sex determining region Y)-box 4 /FL=gb:NM_003107.1 AL136179 SRY (sex determining region Y)-box 4 SOX4 6659 NM_003107 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001841 // neural tube formation // inferred from sequence or structural similarity /// 0002328 // pro-B cell differentiation // inferred from sequence or structural similarity /// 0003183 // mitral valve morphogenesis // inferred from sequence or structural similarity /// 0003211 // cardiac ventricle formation // inferred from sequence or structural similarity /// 0003215 // cardiac right ventricle morphogenesis // inferred from sequence or structural similarity /// 0003289 // atrial septum primum morphogenesis // inferred from sequence or structural similarity /// 0003357 // noradrenergic neuron differentiation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from mutant phenotype /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014009 // glial cell proliferation // inferred from sequence or structural similarity /// 0021510 // spinal cord development // inferred from sequence or structural similarity /// 0021522 // spinal cord motor neuron differentiation // inferred from sequence or structural similarity /// 0021782 // glial cell development // inferred from sequence or structural similarity /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // inferred from mutant phenotype /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from sequence or structural similarity /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035910 // ascending aorta morphogenesis // inferred from sequence or structural similarity /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042769 // DNA damage response, detection of DNA damage // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046826 // negative regulation of protein export from nucleus // inferred from mutant phenotype /// 0048485 // sympathetic nervous system development // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0060070 // canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0060174 // limb bud formation // inferred from sequence or structural similarity /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060548 // negative regulation of cell death // inferred from sequence or structural similarity /// 0060563 // neuroepithelial cell differentiation // inferred from sequence or structural similarity /// 0060993 // kidney morphogenesis // inferred from sequence or structural similarity /// 0071333 // cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 2000761 // positive regulation of N-terminal peptidyl-lysine acetylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001046 // core promoter sequence-specific DNA binding // inferred from direct assay /// 0001071 // nucleic acid binding transcription factor activity // inferred from mutant phenotype /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -192.30 990.20 -3.36 0.01 0.03 -4.49
202382_s_at 202382_s_at NM_005471 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005471.1 /DEF=Homo sapiens glucosamine-6-phosphate isomerase (GNPI), mRNA. /FEA=mRNA /GEN=GNPI /PROD=glucosamine-6-phosphate isomerase /DB_XREF=gi:13027377 /UG=Hs.278500 glucosamine-6-phosphate isomerase /FL=gb:NM_005471.1 gb:AF029914.1 gb:AF048826.1 gb:D31766.1 NM_005471 glucosamine-6-phosphate deaminase 1 GNPDA1 10007 NM_005471 /// XM_005268348 /// XM_006714747 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006043 // glucosamine catabolic process // inferred from mutant phenotype /// 0006044 // N-acetylglucosamine metabolic process // inferred from electronic annotation /// 0006091 // generation of precursor metabolites and energy // inferred from mutant phenotype /// 0007338 // single fertilization // traceable author statement 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004342 // glucosamine-6-phosphate deaminase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 38.68 92.66 3.36 0.01 0.03 -4.49
219217_at 219217_at NM_024678 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024678.1 /DEF=Homo sapiens hypothetical protein FLJ23441 (FLJ23441), mRNA. /FEA=mRNA /GEN=FLJ23441 /PROD=hypothetical protein FLJ23441 /DB_XREF=gi:13375945 /UG=Hs.90012 hypothetical protein FLJ23441 /FL=gb:NM_024678.1 NM_024678 asparaginyl-tRNA synthetase 2, mitochondrial (putative) NARS2 79731 NM_001243251 /// NM_024678 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006421 // asparaginyl-tRNA aminoacylation // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 34.40 84.83 3.36 0.01 0.03 -4.49
65770_at 65770_at AI186666 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI186666:qe82a10.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-1745466 /clone_end=3' /gb=AI186666 /gi=3737304 /ug=Hs.21497 /len=512 AI186666 ras homolog family member T2 RHOT2 89941 NM_138769 /// XM_005255660 /// XM_005255661 /// XM_005255662 /// XM_005255663 /// XM_005255664 /// XM_006720970 /// XM_006720971 /// XM_006720972 /// XM_006720973 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0019725 // cellular homeostasis // inferred from mutant phenotype /// 0047497 // mitochondrion transport along microtubule // inferred from mutant phenotype /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097345 // mitochondrial outer membrane permeabilization // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031307 // integral component of mitochondrial outer membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 38.88 118.66 3.36 0.01 0.03 -4.49
218229_s_at 218229_s_at NM_017542 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017542.1 /DEF=Homo sapiens KIAA1513 protein (KIAA1513), mRNA. /FEA=mRNA /GEN=KIAA1513 /PROD=KIAA1513 protein /DB_XREF=gi:8923835 /UG=Hs.284227 KIAA1513 protein /FL=gb:NM_017542.1 NM_017542 pogo transposable element with KRAB domain POGK 57645 NM_017542 /// XM_005245370 /// XM_005245371 /// XM_005245372 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 62.85 146.35 3.36 0.01 0.03 -4.49
203478_at 203478_at NM_002494 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002494.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 (6kD, KFYI) (NDUFC1), mRNA. /FEA=mRNA /GEN=NDUFC1 /PROD=NADH dehydrogenase (ubiquinone) 1, subcomplexunknown, 1 (6kD, KFYI) /DB_XREF=gi:4505366 /UG=Hs.84549 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 (6kD, KFYI) /FL=gb:AF047184.1 gb:AF047435.1 gb:NM_002494.1 NM_002494 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa NDUFC1 4717 NM_001184986 /// NM_001184987 /// NM_001184988 /// NM_001184989 /// NM_001184990 /// NM_001184991 /// NM_002494 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 148.08 471.01 3.36 0.01 0.03 -4.49
202441_at 202441_at AL568449 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL568449 /FEA=EST /DB_XREF=gi:12922799 /DB_XREF=est:AL568449 /CLONE=CS0DE001YC12 (3 prime) /UG=Hs.285818 similar to Caenorhabditis elegans protein C42C1.9 /FL=gb:AF064093.1 gb:NM_006459.1 AL568449 ER lipid raft associated 1 ERLIN1 10613 NM_001100626 /// NM_006459 /// XM_005269442 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 71.15 347.25 3.35 0.01 0.03 -4.49
219257_s_at 219257_s_at NM_021972 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021972.1 /DEF=Homo sapiens sphingosine kinase 1 (SPHK1), mRNA. /FEA=mRNA /GEN=SPHK1 /PROD=sphingosine kinase 1 /DB_XREF=gi:11464966 /UG=Hs.68061 sphingosine kinase 1 /FL=gb:NM_021972.1 gb:AF238083.1 gb:AF200328.1 NM_021972 sphingosine kinase 1 SPHK1 8877 NM_001142601 /// NM_001142602 /// NM_021972 /// NM_182965 /// XM_005257766 0001568 // blood vessel development // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001956 // positive regulation of neurotransmitter secretion // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006670 // sphingosine metabolic process // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007205 // protein kinase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0010803 // regulation of tumor necrosis factor-mediated signaling pathway // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014075 // response to amine // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0019371 // cyclooxygenase pathway // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032651 // regulation of interleukin-1 beta production // inferred from electronic annotation /// 0033198 // response to ATP // inferred from electronic annotation /// 0035556 // intracellular signal transduction // traceable author statement /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045931 // positive regulation of mitotic cell cycle // inferred from direct assay /// 0045987 // positive regulation of smooth muscle contraction // inferred from direct assay /// 0046521 // sphingoid catabolic process // non-traceable author statement /// 0046834 // lipid phosphorylation // inferred from direct assay /// 0046834 // lipid phosphorylation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from direct assay /// 0005524 // ATP binding // inferred from direct assay /// 0008481 // sphinganine kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017050 // D-erythro-sphingosine kinase activity // inferred from direct assay /// 0051721 // protein phosphatase 2A binding // inferred from physical interaction 118.35 297.68 3.35 0.01 0.03 -4.49
208799_at 208799_at BC004146 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004146.1 /DEF=Homo sapiens, proteasome (prosome, macropain) subunit, beta type, 5, clone MGC:2175, mRNA, complete cds. /FEA=mRNA /PROD=proteasome (prosome, macropain) subunit, betatype, 5 /DB_XREF=gi:13278740 /UG=Hs.78596 proteasome (prosome, macropain) subunit, beta type, 5 /FL=gb:BC004146.1 gb:NM_002797.1 gb:D29011.1 BC004146 proteasome (prosome, macropain) subunit, beta type, 5 PSMB5 5693 NM_001130725 /// NM_001144932 /// NM_002797 /// XM_005267871 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 92.05 567.60 3.35 0.01 0.03 -4.49
205992_s_at 205992_s_at NM_000585 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000585.1 /DEF=Homo sapiens interleukin 15 (IL15), mRNA. /FEA=mRNA /GEN=IL15 /PROD=interleukin 15 /DB_XREF=gi:10835152 /UG=Hs.168132 interleukin 15 /FL=gb:NM_000585.1 gb:U14407.1 NM_000585 interleukin 15 IL15 3600 NM_000585 /// NM_172174 /// NM_172175 /// NR_037840 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0001866 // NK T cell proliferation // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0014732 // skeletal muscle atrophy // inferred from electronic annotation /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032740 // positive regulation of interleukin-17 production // inferred from direct assay /// 0032819 // positive regulation of natural killer cell proliferation // inferred from electronic annotation /// 0032825 // positive regulation of natural killer cell differentiation // inferred from electronic annotation /// 0034105 // positive regulation of tissue remodeling // inferred by curator /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0045062 // extrathymic T cell selection // inferred from electronic annotation /// 0045580 // regulation of T cell differentiation // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0048535 // lymph node development // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050691 // regulation of defense response to virus by host // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred by curator /// 0050778 // positive regulation of immune response // inferred from electronic annotation /// 0071305 // cellular response to vitamin D // inferred from electronic annotation 0005576 // extracellular region // non-traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // traceable author statement /// 0005794 // Golgi apparatus // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // traceable author statement 0005125 // cytokine activity // inferred from electronic annotation /// 0005126 // cytokine receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -36.17 38.09 -3.35 0.01 0.03 -4.49
210844_x_at 210844_x_at D14705 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D14705.1 /DEF=Human mRNA for alpha-catenin, complete cds. /FEA=mRNA /PROD=human alpha-catenin /DB_XREF=gi:415305 /UG=Hs.178452 catenin (cadherin-associated protein), alpha 1 (102kD) /FL=gb:BC000385.1 gb:D14705.1 gb:D13866.1 D14705 catenin (cadherin-associated protein), alpha 1, 102kDa CTNNA1 1495 NM_001290307 /// NM_001290309 /// NM_001290310 /// NM_001290312 /// NM_001903 /// XM_005271898 /// XM_005271899 /// XM_006714536 0001541 // ovarian follicle development // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016264 // gap junction assembly // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043297 // apical junction assembly // non-traceable author statement /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0050808 // synapse organization // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // inferred from direct assay /// 0090136 // epithelial cell-cell adhesion // inferred from electronic annotation /// 2000146 // negative regulation of cell motility // inferred from electronic annotation /// 2001045 // negative regulation of integrin-mediated signaling pathway // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005915 // zonula adherens // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016342 // catenin complex // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0017166 // vinculin binding // inferred from physical interaction /// 0042043 // neurexin family protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045295 // gamma-catenin binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from electronic annotation -215.32 1018.81 -3.35 0.01 0.03 -4.49
209238_at 209238_at BE966922 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE966922 /FEA=EST /DB_XREF=gi:11772839 /DB_XREF=est:601660942R1 /CLONE=IMAGE:3915610 /UG=Hs.82240 syntaxin 3A /FL=gb:AJ002076.1 gb:NM_004177.1 gb:U32315.1 BE966922 syntaxin 3 STX3 6809 NM_001178040 /// NM_004177 /// XM_005274195 /// XM_005274196 /// XM_005274198 /// XM_005274199 /// XM_005274200 /// XM_006718672 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0061025 // membrane fusion // inferred from electronic annotation 0005773 // vacuole // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030141 // secretory granule // inferred from electronic annotation /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0031201 // SNARE complex // inferred from sequence or structural similarity /// 0042581 // specific granule // inferred from direct assay /// 0042582 // azurophil granule // inferred from direct assay /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0050544 // arachidonic acid binding // inferred from sequence or structural similarity 49.30 127.25 3.35 0.01 0.03 -4.49
212887_at 212887_at AI753659 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI753659 /FEA=EST /DB_XREF=gi:5131923 /DB_XREF=est:cr13e03.x1 /CLONE=HBMSC_cr13e03 /UG=Hs.321403 Homo sapiens mRNA; cDNA DKFZp564O2363 (from clone DKFZp564O2363) AI753659 Sec23 homolog A (S. cerevisiae) SEC23A 10484 NM_006364 /// XM_005267262 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030127 // COPII vesicle coat // inferred from electronic annotation /// 0030868 // smooth endoplasmic reticulum membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation 132.98 423.06 3.35 0.01 0.03 -4.49
202209_at 202209_at NM_014463 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014463.1 /DEF=Homo sapiens Lsm3 protein (LSM3), mRNA. /FEA=mRNA /GEN=LSM3 /PROD=Lsm3 protein /DB_XREF=gi:7657314 /UG=Hs.111632 Lsm3 protein /FL=gb:AF182418.1 gb:AF182289.1 gb:NM_014463.1 NM_014463 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) LSM3 27258 NM_014463 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement 0005634 // nucleus // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 49.83 208.74 3.35 0.01 0.03 -4.49
217226_s_at 217226_s_at M95929 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:M95929.1 /DEF=Human homeobox protein (PHOX1) mRNA, 3 end. /FEA=mRNA /GEN=PHOX1 /PROD=homeobox protein /DB_XREF=gi:189946 /UG=Hs.155606 paired mesoderm homeo box 1 M95929 sideroflexin 3 SFXN3 81855 NM_030971 /// XR_428720 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0071837 // HMG box domain binding // inferred from electronic annotation 69.50 118.80 3.35 0.01 0.03 -4.49
218090_s_at 218090_s_at NM_018117 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018117.8 /DEF=Homo sapiens WD40 repeat domain 11 protein (WDR11), mRNA. /FEA=mRNA /GEN=WDR11 /PROD=WD40 repeat domain 11 protein /DB_XREF=gi:13324687 /UG=Hs.16677 WD repeat domain 15 /FL=gb:AF320223.1 gb:NM_018117.8 NM_018117 WD repeat domain 11 WDR11 55717 NM_018117 /// XM_005269962 /// XM_005269963 /// XM_005269964 /// XR_246098 /// XR_428707 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -43.80 181.12 -3.35 0.01 0.03 -4.49
200716_x_at 200716_x_at NM_012423 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012423.1 /DEF=Homo sapiens ribosomal protein L13a (RPL13A), mRNA. /FEA=mRNA /GEN=RPL13A /PROD=ribosomal protein L13a /DB_XREF=gi:6912633 /UG=Hs.119122 ribosomal protein L13a /FL=gb:BC000514.1 gb:NM_012423.1 NM_012423 ribosomal protein L13a /// ribosomal protein L13a pseudogene 5 /// small nucleolar RNA, C/D box 32A /// small nucleolar RNA, C/D box 33 /// small nucleolar RNA, C/D box 34 /// small nucleolar RNA, C/D box 35A RPL13A /// RPL13AP5 /// SNORD32A /// SNORD33 /// SNORD34 /// SNORD35A 23521 /// 26816 /// 26817 /// 26818 /// 26819 /// 728658 NM_001270491 /// NM_012423 /// NR_000018 /// NR_000019 /// NR_000020 /// NR_000021 /// NR_026712 /// NR_073024 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071346 // cellular response to interferon-gamma // inferred from direct assay /// 1901194 // negative regulation of formation of translation preinitiation complex // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -968.12 3943.36 -3.35 0.01 0.03 -4.49
204735_at 204735_at NM_006202 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006202.1 /DEF=Homo sapiens phosphodiesterase 4A, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E2) (PDE4A), mRNA. /FEA=mRNA /GEN=PDE4A /PROD=phosphodiesterase 4A, cAMP-specific (dunce(Drosophila)-homolog phosphodiesterase E2) /DB_XREF=gi:5453861 /UG=Hs.89901 phosphodiesterase 4A, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E2) /FL=gb:U97584.1 gb:U68532.1 gb:NM_006202.1 NM_006202 phosphodiesterase 4A, cAMP-specific PDE4A 5141 NM_001111307 /// NM_001111308 /// NM_001111309 /// NM_001243121 /// NM_006202 /// XM_005259933 /// XM_006722765 0006198 // cAMP catabolic process // inferred from direct assay /// 0006198 // cAMP catabolic process // inferred from electronic annotation /// 0006198 // cAMP catabolic process // inferred from genetic interaction /// 0006198 // cAMP catabolic process // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010738 // regulation of protein kinase A signaling // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0043949 // regulation of cAMP-mediated signaling // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from genetic interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from genetic interaction /// 0046872 // metal ion binding // inferred from electronic annotation 36.00 71.70 3.35 0.01 0.03 -4.49
209694_at 209694_at M97655 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M97655.1 /DEF=Human 6-pyruvoyltetrahydropterin synthase (PTS) mRNA, complete cds. /FEA=mRNA /GEN=PTS /PROD=6-pyruvoyltetrahydropterin synthase /DB_XREF=gi:306438 /UG=Hs.366 6-pyruvoyltetrahydropterin synthase /FL=gb:M97655.1 gb:NM_000317.1 gb:D17400.1 M97655 6-pyruvoyltetrahydropterin synthase PTS 5805 NM_000317 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003874 // 6-pyruvoyltetrahydropterin synthase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 84.13 236.91 3.34 0.01 0.03 -4.49
208931_s_at 208931_s_at AF147209 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF147209.1 /DEF=Homo sapiens double-stranded RNA-binding nuclear protein DRBP76 mRNA, complete cds. /FEA=mRNA /PROD=double-stranded RNA-binding nuclear proteinDRBP76 /DB_XREF=gi:4929370 /UG=Hs.256583 interleukin enhancer binding factor 3, 90kD /FL=gb:AF147209.1 gb:AF167569.1 AF147209 interleukin enhancer binding factor 3, 90kDa ILF3 3609 NM_001137673 /// NM_004516 /// NM_012218 /// NM_017620 /// NM_153464 /// XM_005259895 /// XM_006722742 0000279 // M phase // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0045071 // negative regulation of viral genome replication // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 69.60 237.45 3.34 0.01 0.03 -4.49
201583_s_at 201583_s_at NM_006363 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006363.1 /DEF=Homo sapiens Sec23 (S. cerevisiae) homolog B (SEC23B), mRNA. /FEA=mRNA /GEN=SEC23B /PROD=Sec23 (S. cerevisiae) homolog B /DB_XREF=gi:5454043 /UG=Hs.173497 Sec23 (S. cerevisiae) homolog B /FL=gb:BC005404.1 gb:NM_006363.1 NM_006363 Sec23 homolog B (S. cerevisiae) SEC23B 10483 NM_001172745 /// NM_001172746 /// NM_006363 /// NM_032985 /// NM_032986 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0030127 // COPII vesicle coat // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 31.42 118.74 3.34 0.01 0.03 -4.49
201202_at 201202_at NM_002592 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002592.1 /DEF=Homo sapiens proliferating cell nuclear antigen (PCNA), mRNA. /FEA=mRNA /GEN=PCNA /PROD=proliferating cell nuclear antigen /DB_XREF=gi:4505640 /UG=Hs.78996 proliferating cell nuclear antigen /FL=gb:BC000491.1 gb:M15796.1 gb:NM_002592.1 NM_002592 proliferating cell nuclear antigen PCNA 5111 NM_002592 /// NM_182649 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000722 // telomere maintenance via recombination // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0006260 // DNA replication // non-traceable author statement /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006272 // leading strand elongation // not recorded /// 0006275 // regulation of DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // non-traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006284 // base-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006297 // nucleotide-excision repair, DNA gap filling // traceable author statement /// 0006298 // mismatch repair // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0019985 // translesion synthesis // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0032077 // positive regulation of deoxyribonuclease activity // inferred from direct assay /// 0032201 // telomere maintenance via semi-conservative replication // traceable author statement /// 0033993 // response to lipid // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005663 // DNA replication factor C complex // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0030896 // checkpoint clamp complex // inferred from electronic annotation /// 0043596 // nuclear replication fork // inferred from direct assay /// 0043626 // PCNA complex // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070557 // PCNA-p21 complex // inferred from direct assay 0000701 // purine-specific mismatch base pair DNA N-glycosylase activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030337 // DNA polymerase processivity factor activity // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0032139 // dinucleotide insertion or deletion binding // inferred from direct assay /// 0032405 // MutLalpha complex binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0070182 // DNA polymerase binding // inferred from physical interaction 161.45 221.93 3.34 0.01 0.03 -4.49
204274_at 204274_at AA812215 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA812215 /FEA=EST /DB_XREF=gi:2881826 /DB_XREF=est:ob84g01.s1 /CLONE=IMAGE:1338096 /UG=Hs.9222 estrogen receptor binding site associated, antigen, 9 /FL=gb:BC005249.1 gb:AF006265.1 gb:AB007619.1 gb:NM_004215.1 AA812215 estrogen receptor binding site associated, antigen, 9 EBAG9 9166 NM_001278938 /// NM_004215 /// NM_198120 0001558 // regulation of cell growth // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016505 // peptidase activator activity involved in apoptotic process // non-traceable author statement 30.55 68.42 3.34 0.01 0.03 -4.49
210104_at 210104_at AF074723 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF074723.1 /DEF=Homo sapiens RNA polymerase transcriptional regulation mediator (MED6) mRNA, complete cds. /FEA=mRNA /GEN=MED6 /PROD=RNA polymerase transcriptional regulationmediator /DB_XREF=gi:3329505 /UG=Hs.167738 RNA polymerase II transcriptional regulation mediator (Med6, S. cerevisiae, homolog of) /FL=gb:BC004106.1 gb:AF074723.1 AF074723 mediator complex subunit 6 MED6 10001 NM_001284209 /// NM_001284210 /// NM_001284211 /// NM_005466 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016592 // mediator complex // inferred from direct assay /// 0016592 // mediator complex // inferred from mutant phenotype 0001104 // RNA polymerase II transcription cofactor activity // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction 36.73 72.61 3.34 0.01 0.03 -4.49
201798_s_at 201798_s_at NM_013451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013451.1 /DEF=Homo sapiens fer-1 (C.elegans)-like 3 (myoferlin) (FER1L3), mRNA. /FEA=mRNA /GEN=FER1L3 /PROD=fer-1 (C.elegans)-like 3 (myoferlin) /DB_XREF=gi:7305052 /UG=Hs.234680 fer-1 (C.elegans)-like 3 (myoferlin) /FL=gb:AF182316.1 gb:NM_013451.1 NM_013451 myoferlin MYOF 26509 NM_013451 /// NM_133337 /// XM_005269693 /// XM_005269694 /// XM_006717760 0001778 // plasma membrane repair // inferred from sequence or structural similarity /// 0006936 // muscle contraction // traceable author statement /// 0008015 // blood circulation // traceable author statement /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0034605 // cellular response to heat // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from sequence or structural similarity -94.60 1067.42 -3.34 0.01 0.03 -4.49
212708_at 212708_at AV721987 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV721987 /FEA=EST /DB_XREF=gi:10824025 /DB_XREF=est:AV721987 /CLONE=HTBAFB10 /UG=Hs.184779 Homo sapiens mRNA; cDNA DKFZp586B1922 (from clone DKFZp586B1922) AV721987 male-specific lethal 1 homolog (Drosophila) MSL1 339287 NM_001012241 /// XM_005257298 /// XM_005257299 0006325 // chromatin organization // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043984 // histone H4-K16 acetylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0072487 // MSL complex // inferred from direct assay 70.62 200.06 3.33 0.01 0.03 -4.49
202360_at 202360_at NM_014757 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014757.2 /DEF=Homo sapiens mastermind (Drosophila), homolog of (MAML1), mRNA. /FEA=mRNA /GEN=MAML1 /PROD=homolog of Drosophila mastermind /DB_XREF=gi:13376996 /UG=Hs.76986 mastermind (Drosophila), homolog of /FL=gb:NM_014757.2 gb:D83785.1 NM_014757 mastermind-like 1 (Drosophila) MAML1 9794 NM_014757 0003162 // atrioventricular node development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from direct assay /// 0007219 // Notch signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010831 // positive regulation of myotube differentiation // inferred from genetic interaction /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051149 // positive regulation of muscle cell differentiation // inferred from electronic annotation /// 0060928 // atrioventricular node cell development // inferred from sequence or structural similarity 0002193 // MAML1-RBP-Jkappa- ICN1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042605 // peptide antigen binding // inferred from physical interaction 47.80 172.65 3.33 0.01 0.03 -4.49
209864_at 209864_at AB045118 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB045118.1 /DEF=Homo sapiens FRAT2 mRNA, complete cds. /FEA=mRNA /GEN=FRAT2 /PROD=FRAT2 /DB_XREF=gi:13365650 /UG=Hs.140720 GSK-3 binding protein FRAT2 /FL=gb:AB045118.1 AB045118 frequently rearranged in advanced T-cell lymphomas 2 FRAT2 23401 NM_012083 0007275 // multicellular organismal development // non-traceable author statement /// 0008283 // cell proliferation // non-traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation -32.98 75.19 -3.33 0.01 0.03 -4.49
203350_at 203350_at NM_001128 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001128.1 /DEF=Homo sapiens adaptor-related protein complex 1, gamma 1 subunit (AP1G1), mRNA. /FEA=mRNA /GEN=AP1G1 /PROD=adaptor-related protein complex 1, gamma 1subunit /DB_XREF=gi:4501978 /UG=Hs.5344 adaptor-related protein complex 1, gamma 1 subunit /FL=gb:AB015317.1 gb:NM_001128.1 NM_001128 adaptor-related protein complex 1, gamma 1 subunit AP1G1 164 NM_001030007 /// NM_001128 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0032438 // melanosome organization // inferred by curator /// 0035646 // endosome to melanosome transport // inferred from mutant phenotype /// 0043323 // positive regulation of natural killer cell degranulation // inferred from mutant phenotype /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0061024 // membrane organization // traceable author statement /// 0090160 // Golgi to lysosome transport // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005765 // lysosomal membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030119 // AP-type membrane coat adaptor complex // traceable author statement /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0030665 // clathrin-coated vesicle membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay 0005215 // transporter activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0019894 // kinesin binding // inferred from physical interaction /// 0030742 // GTP-dependent protein binding // inferred from physical interaction -40.30 106.38 -3.33 0.01 0.03 -4.49
209076_s_at 209076_s_at BC000974 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000974.2 /DEF=Homo sapiens, Similar to hypothetical protein 628, clone MGC:5116, mRNA, complete cds. /FEA=mRNA /PROD=Similar to hypothetical protein 628 /DB_XREF=gi:12803025 /UG=Hs.181349 hypothetical protein 628 /FL=gb:BC000974.2 BC000974 WD repeat domain 45B WDR45B 56270 NM_019613 /// XM_005256377 /// XM_005256378 /// XM_006722285 /// XR_243524 0000045 // autophagic vacuole assembly // not recorded 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0032266 // phosphatidylinositol-3-phosphate binding // not recorded /// 0080025 // phosphatidylinositol-3,5-bisphosphate binding // not recorded -156.98 489.51 -3.32 0.01 0.03 -4.49
212627_s_at 212627_s_at AL581473 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL581473 /FEA=EST /DB_XREF=gi:12948508 /DB_XREF=est:AL581473 /CLONE=CS0DG004YK09 (3 prime) /UG=Hs.182877 KIAA0116 protein AL581473 exosome component 7 EXOSC7 23016 NM_015004 /// NR_023353 /// XM_006713035 /// XR_245104 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0006364 // rRNA processing // traceable author statement /// 0006401 // RNA catabolic process // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // traceable author statement 0000178 // exosome (RNase complex) // inferred from direct assay /// 0000178 // exosome (RNase complex) // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000175 // 3'-5'-exoribonuclease activity // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004532 // exoribonuclease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 61.80 115.08 3.32 0.01 0.03 -4.49
203034_s_at 203034_s_at NM_000990 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000990.1 /DEF=Homo sapiens ribosomal protein L27a (RPL27A), mRNA. /FEA=mRNA /GEN=RPL27A /PROD=ribosomal protein L27a /DB_XREF=gi:4506624 /UG=Hs.76064 ribosomal protein L27a /FL=gb:BC005326.1 gb:NM_000990.1 gb:U14968.1 NM_000990 ribosomal protein L27a /// small nucleolar RNA, H/ACA box 45A RPL27A /// SNORA45A 6157 /// 619562 NM_000990 /// NM_032650 /// NR_002580 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation /// 0006744 // ubiquinone biosynthetic process // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0009234 // menaquinone biosynthetic process // inferred from electronic annotation /// 0009234 // menaquinone biosynthetic process // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042371 // vitamin K biosynthetic process // inferred from direct assay /// 0042371 // vitamin K biosynthetic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030173 // integral component of Golgi membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0004659 // prenyltransferase activity // inferred from direct assay /// 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016209 // antioxidant activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -869.35 4334.45 -3.32 0.01 0.03 -4.49
221532_s_at 221532_s_at AF309553 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF309553.1 /DEF=Homo sapiens meiotic recombination protein REC14 mRNA, complete cds. /FEA=mRNA /PROD=meiotic recombination protein REC14 /DB_XREF=gi:11139241 /UG=Hs.296242 recombination protein REC14 /FL=gb:AF309553.1 gb:NM_025234.1 AF309553 WD repeat domain 61 WDR61 80349 NM_025234 /// XM_005254698 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from direct assay /// 0045638 // negative regulation of myeloid cell differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from mutant phenotype /// 0080182 // histone H3-K4 trimethylation // inferred from mutant phenotype /// 2001162 // positive regulation of histone H3-K79 methylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016593 // Cdc73/Paf1 complex // inferred from direct assay /// 0035327 // transcriptionally active chromatin // inferred from direct assay /// 0055087 // Ski complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 59.97 209.84 3.32 0.01 0.03 -4.49
209990_s_at 209990_s_at AF056085 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF056085.1 /DEF=Homo sapiens GABA-B receptor mRNA, complete cds. /FEA=mRNA /PROD=GABA-B receptor /DB_XREF=gi:3719225 /UG=Hs.198612 G protein-coupled receptor 51 /FL=gb:AF056085.1 gb:AF069755.1 gb:AF074483.1 gb:NM_005458.1 gb:AF099033.1 AF056085 gamma-aminobutyric acid (GABA) B receptor, 2 GABBR2 9568 NM_005458 /// XM_005252316 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007194 // negative regulation of adenylate cyclase activity // traceable author statement /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from direct assay /// 0007268 // synaptic transmission // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0038039 // G-protein coupled receptor heterodimeric complex // inferred from physical interaction /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // G-protein coupled GABA receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 72.47 120.99 3.32 0.01 0.03 -4.49
214946_x_at 214946_x_at AV728658 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV728658 /FEA=EST /DB_XREF=gi:10838079 /DB_XREF=est:AV728658 /CLONE=HTCALE08 /UG=Hs.13273 KIAA0592 protein AV728658 family with sequence similarity 21, member A /// family with sequence similarity 21, member C /// uncharacterized LOC101930591 FAM21A /// FAM21C /// LOC101930591 253725 /// 387680 /// 101930591 NM_001005751 /// NM_001169106 /// NM_001169107 /// NM_001291398 /// NM_015262 /// NM_018232 /// XM_005269805 /// XM_005269806 /// XM_005269807 /// XM_005269808 /// XM_005269810 /// XM_006717831 /// XM_006717832 /// XR_247516 0006810 // transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype /// 0042147 // retrograde transport, endosome to Golgi // inferred from sequence or structural similarity 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0071203 // WASH complex // inferred from direct assay /// 0071203 // WASH complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction -52.03 157.16 -3.32 0.01 0.03 -4.49
203138_at 203138_at NM_003642 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003642.1 /DEF=Homo sapiens histone acetyltransferase 1 (HAT1), mRNA. /FEA=mRNA /GEN=HAT1 /PROD=histone acetyltransferase 1 /DB_XREF=gi:4504340 /UG=Hs.13340 histone acetyltransferase 1 /FL=gb:AF030424.1 gb:NM_003642.1 NM_003642 histone acetyltransferase 1 HAT1 8520 NM_001033085 /// NM_003642 /// NR_027862 /// XM_006712808 0006323 // DNA packaging // traceable author statement /// 0006325 // chromatin organization // traceable author statement /// 0006335 // DNA replication-dependent nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006348 // chromatin silencing at telomere // inferred from electronic annotation /// 0006475 // internal protein amino acid acetylation // traceable author statement /// 0007584 // response to nutrient // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 32.85 131.70 3.32 0.01 0.03 -4.49
212126_at 212126_at BG391282 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG391282 /FEA=EST /DB_XREF=gi:13284730 /DB_XREF=est:602417327F1 /CLONE=IMAGE:4536582 /UG=Hs.306000 hypothetical protein FLJ10624 BG391282 chromobox homolog 5 CBX5 23468 NM_001127321 /// NM_001127322 /// NM_012117 0007596 // blood coagulation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype 0000118 // histone deacetylase complex // inferred from sequence or structural similarity /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010369 // chromocenter // inferred from electronic annotation /// 0016605 // PML body // inferred from mutant phenotype /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity /// 0031618 // nuclear centromeric heterochromatin // non-traceable author statement /// 0035097 // histone methyltransferase complex // inferred from sequence or structural similarity 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from sequence or structural similarity /// 0035064 // methylated histone binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0070491 // repressing transcription factor binding // inferred from sequence or structural similarity /// 1990226 // histone methyltransferase binding // inferred from physical interaction 58.05 146.90 3.31 0.01 0.03 -4.49
212175_s_at 212175_s_at AL513611 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL513611 /FEA=EST /DB_XREF=gi:12777105 /DB_XREF=est:AL513611 /CLONE=XCL0BB001ZB07 (3 prime) /UG=Hs.171811 adenylate kinase 2 AL513611 adenylate kinase 2 AK2 204 NM_001199199 /// NM_001625 /// NM_013411 /// NR_037591 /// NR_037592 /// XR_246248 0001889 // liver development // inferred from electronic annotation /// 0006119 // oxidative phosphorylation // inferred from electronic annotation /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006172 // ADP biosynthetic process // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046033 // AMP metabolic process // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0046060 // dATP metabolic process // inferred from electronic annotation /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation /// 0046939 // nucleotide phosphorylation // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0097066 // response to thyroid hormone // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0036126 // sperm flagellum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097226 // sperm mitochondrial sheath // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019205 // nucleobase-containing compound kinase activity // inferred from electronic annotation 39.33 182.79 3.31 0.01 0.03 -4.49
211037_s_at 211037_s_at BC006309 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006309.1 /DEF=Homo sapiens, Similar to RIKEN cDNA 5730589L02 gene, clone MGC:13124, mRNA, complete cds. /FEA=mRNA /PROD=Similar to RIKEN cDNA 5730589L02 gene /DB_XREF=gi:13623420 /FL=gb:BC006309.1 BC006309 membrane bound O-acyltransferase domain containing 7 MBOAT7 79143 NM_001146056 /// NM_001146082 /// NM_001146083 /// NM_024298 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0021591 // ventricular system development // inferred from electronic annotation /// 0036149 // phosphatidylinositol acyl-chain remodeling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 31.22 44.29 3.31 0.01 0.03 -4.49
213656_s_at 213656_s_at BF593594 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF593594 /FEA=EST /DB_XREF=gi:11685918 /DB_XREF=est:7q12a08.x1 /CLONE=IMAGE:3697839 /UG=Hs.274440 Homo sapiens mRNA; cDNA DKFZp434I139 (from clone DKFZp434I139) BF593594 kinesin light chain 1 KLC1 3831 NM_001130107 /// NM_005552 /// NM_182923 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008088 // axon cargo transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0035418 // protein localization to synapse // inferred from electronic annotation /// 0035617 // stress granule disassembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043227 // membrane-bounded organelle // inferred from electronic annotation 0003774 // motor activity // traceable author statement /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015631 // tubulin binding // inferred from electronic annotation -95.05 351.18 -3.31 0.01 0.03 -4.49
213281_at 213281_at BE327172 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE327172 /FEA=EST /DB_XREF=gi:9200948 /DB_XREF=est:hw08a05.x1 /CLONE=IMAGE:3182288 /UG=Hs.78465 v-jun avian sarcoma virus 17 oncogene homolog BE327172 jun proto-oncogene JUN 3725 NM_002228 0001525 // angiogenesis // inferred from electronic annotation /// 0001774 // microglial cell activation // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007184 // SMAD protein import into nucleus // inferred from direct assay /// 0007568 // aging // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009314 // response to radiation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035026 // leading edge cell differentiation // inferred from electronic annotation /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043922 // negative regulation by host of viral transcription // inferred from direct assay /// 0043923 // positive regulation by host of viral transcription // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred by curator /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // traceable author statement /// 0051365 // cellular response to potassium ion starvation // inferred from electronic annotation /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from direct assay /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0000228 // nuclear chromosome // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from electronic annotation 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred by curator /// 0003677 // DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred by curator /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0035497 // cAMP response element binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070412 // R-SMAD binding // inferred from physical interaction /// 0071837 // HMG box domain binding // inferred from electronic annotation -49.10 124.25 -3.31 0.01 0.03 -4.49
201385_at 201385_at NM_001358 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001358.1 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 15 (DDX15), mRNA. /FEA=mRNA /GEN=DDX15 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 15 /DB_XREF=gi:4557516 /UG=Hs.5683 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 15 /FL=gb:AB001636.1 gb:NM_001358.1 gb:AF279891.1 NM_001358 DEAH (Asp-Glu-Ala-His) box helicase 15 DHX15 1665 NM_001358 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred by curator 0005634 // nucleus // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0071008 // U2-type post-mRNA release spliceosomal complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // traceable author statement /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 173.10 957.90 3.31 0.01 0.03 -4.49
218135_at 218135_at NM_016570 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016570.1 /DEF=Homo sapiens CDA14 (LOC51290), mRNA. /FEA=mRNA /GEN=LOC51290 /PROD=CDA14 /DB_XREF=gi:7706104 /UG=Hs.26813 CDA14 /FL=gb:BC000887.1 gb:AF216751.1 gb:NM_016570.1 gb:AF183410.1 NM_016570 ERGIC and golgi 2 ERGIC2 51290 NM_016570 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 40.67 121.41 3.31 0.01 0.03 -4.49
203542_s_at 203542_s_at AI690205 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI690205 /FEA=EST /DB_XREF=gi:4901499 /DB_XREF=est:tx33d02.x1 /CLONE=IMAGE:2271363 /UG=Hs.150557 basic transcription element binding protein 1 /FL=gb:NM_001206.1 gb:D31716.1 AI690205 Kruppel-like factor 9 KLF9 687 NM_001206 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0050847 // progesterone receptor signaling pathway // inferred from electronic annotation /// 0097067 // cellular response to thyroid hormone stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -34.75 92.30 -3.31 0.01 0.03 -4.49
218563_at 218563_at NM_004542 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004542.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 (9kD, B9) (NDUFA3), mRNA. /FEA=mRNA /GEN=NDUFA3 /PROD=NADH dehydrogenase (ubiquinone) 1 alphasubcomplex, 3 (9kD, B9) /DB_XREF=gi:4758771 /UG=Hs.198269 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 (9kD, B9) /FL=gb:AF044955.1 gb:AF070653.1 gb:NM_004542.1 NM_004542 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa NDUFA3 4696 NM_004542 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 53.40 206.35 3.31 0.01 0.03 -4.49
207700_s_at 207700_s_at NM_006534 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006534.1 /DEF=Homo sapiens nuclear receptor coactivator 3 (NCOA3), mRNA. /FEA=mRNA /GEN=NCOA3 /PROD=nuclear receptor coactivator 3 /DB_XREF=gi:5729725 /UG=Hs.225977 nuclear receptor coactivator 3 /FL=gb:AF036892.1 gb:NM_006534.1 NM_006534 nuclear receptor coactivator 3 NCOA3 8202 NM_001174087 /// NM_001174088 /// NM_006534 /// NM_181659 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0016573 // histone acetylation // inferred from direct assay /// 0016573 // histone acetylation // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035624 // receptor transactivation // traceable author statement /// 0045618 // positive regulation of keratinocyte differentiation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048589 // developmental growth // inferred from electronic annotation /// 0060068 // vagina development // inferred from electronic annotation /// 0060713 // labyrinthine layer morphogenesis // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from direct assay /// 0046966 // thyroid hormone receptor binding // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // non-traceable author statement 51.55 83.65 3.31 0.01 0.03 -4.49
218014_at 218014_at NM_024844 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024844.1 /DEF=Homo sapiens hypothetical protein FLJ12549 (FLJ12549), mRNA. /FEA=mRNA /GEN=FLJ12549 /PROD=hypothetical protein FLJ12549 /DB_XREF=gi:13376258 /UG=Hs.184352 hypothetical protein FLJ12549 /FL=gb:BC000697.1 gb:NM_024844.1 NM_024844 nucleoporin 85kDa NUP85 79902 NM_024844 /// XM_005257690 /// XM_005257692 /// XM_005257693 /// XM_006722094 /// XR_243683 /// XR_429921 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031080 // nuclear pore outer ring // inferred from direct assay /// 0031080 // nuclear pore outer ring // non-traceable author statement /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 38.00 118.78 3.31 0.01 0.03 -4.49
201943_s_at 201943_s_at NM_001304 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001304.2 /DEF=Homo sapiens carboxypeptidase D (CPD), mRNA. /FEA=mRNA /GEN=CPD /PROD=carboxypeptidase D precursor /DB_XREF=gi:8051580 /UG=Hs.5057 carboxypeptidase D /FL=gb:U65090.1 gb:D85390.1 gb:NM_001304.2 NM_001304 carboxypeptidase D CPD 1362 NM_001199775 /// NM_001304 0006508 // proteolysis // inferred from electronic annotation 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -76.85 157.65 -3.30 0.01 0.03 -4.49
200022_at 200022_at NM_000979 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000979.1 /DEF=Homo sapiens ribosomal protein L18 (RPL18), mRNA. /FEA=mRNA /GEN=RPL18 /PROD=ribosomal protein L18 /DB_XREF=gi:4506606 /UG=Hs.75458 ribosomal protein L18 /FL=gb:BC000374.1 gb:L11566.1 gb:NM_000979.1 NM_000979 ribosomal protein L18 RPL18 6141 NM_000979 /// NM_001270490 /// NR_073022 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement -545.32 2690.84 -3.30 0.01 0.03 -4.49
208743_s_at 208743_s_at BC001359 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001359.1 /DEF=Homo sapiens, tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, beta polypeptide, clone MGC:1580, mRNA, complete cds. /FEA=mRNA /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, beta polypeptide /DB_XREF=gi:12655022 /UG=Hs.279920 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, beta polypeptide /FL=gb:BC001359.1 BC001359 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta YWHAB 7529 NM_003404 /// NM_139323 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0006605 // protein targeting // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035308 // negative regulation of protein dephosphorylation // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051220 // cytoplasmic sequestering of protein // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0050815 // phosphoserine binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 156.95 433.12 3.30 0.01 0.03 -4.49
204683_at 204683_at NM_000873 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000873.2 /DEF=Homo sapiens intercellular adhesion molecule 2 (ICAM2), mRNA. /FEA=mRNA /GEN=ICAM2 /PROD=intercellular adhesion molecule 2 precursor /DB_XREF=gi:12545398 /UG=Hs.83733 intercellular adhesion molecule 2 /FL=gb:NM_000873.2 gb:BC003097.1 NM_000873 intercellular adhesion molecule 2 ICAM2 3384 NM_000873 /// NM_001099786 /// NM_001099787 /// NM_001099788 /// NM_001099789 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0050776 // regulation of immune response // traceable author statement 0001931 // uropod // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from electronic annotation 0005178 // integrin binding // inferred from physical interaction 216.67 1128.41 3.30 0.01 0.03 -4.49
201334_s_at 201334_s_at AB002380 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB002380.1 /DEF=Human mRNA for KIAA0382 gene, partial cds. /FEA=mRNA /GEN=KIAA0382 /DB_XREF=gi:2224704 /UG=Hs.6582 Rho guanine exchange factor (GEF) 12 /FL=gb:AF180681.1 gb:NM_015313.1 AB002380 Rho guanine nucleotide exchange factor (GEF) 12 ARHGEF12 23365 NM_001198665 /// NM_015313 /// XM_005271478 /// XM_005271480 /// XM_006718805 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001664 // G-protein coupled receptor binding // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation 95.05 355.28 3.30 0.01 0.03 -4.49
221510_s_at 221510_s_at AF158555 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF158555.1 /DEF=Homo sapiens glutaminase C mRNA, complete cds. /FEA=mRNA /PROD=glutaminase C /DB_XREF=gi:5690371 /UG=Hs.239189 glutaminase /FL=gb:AF158555.1 gb:AF097492.1 AF158555 glutaminase GLS 2744 NM_001256310 /// NM_014905 /// XM_005246467 /// XM_006712435 /// XM_006712436 /// XR_241306 0001967 // suckling behavior // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // inferred from direct assay /// 0006537 // glutamate biosynthetic process // traceable author statement /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006543 // glutamine catabolic process // inferred from direct assay /// 0006543 // glutamine catabolic process // non-traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0014047 // glutamate secretion // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051289 // protein homotetramerization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation 0004359 // glutaminase activity // inferred from direct assay /// 0004359 // glutaminase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 84.53 148.26 3.29 0.01 0.03 -4.49
201309_x_at 201309_x_at U36189 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U36189.1 /DEF=Human p311 protein (hP311) mRNA, complete cds. /FEA=mRNA /GEN=hP311 /PROD=p311 protein /DB_XREF=gi:1244509 /UG=Hs.142827 P311 protein /FL=gb:U36189.1 gb:NM_004772.1 gb:U30521.1 U36189 neuronal regeneration related protein NREP 9315 NM_001142474 /// NM_001142475 /// NM_001142476 /// NM_001142477 /// NM_001142478 /// NM_001142479 /// NM_001142480 /// NM_001142481 /// NM_001142482 /// NM_001142483 /// NM_004772 /// XM_006714732 /// XM_006714733 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 34.55 91.33 3.29 0.01 0.03 -4.49
202591_s_at 202591_s_at NM_003143 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003143.1 /DEF=Homo sapiens single-stranded DNA-binding protein (SSBP), mRNA. /FEA=mRNA /GEN=SSBP /PROD=single-stranded DNA-binding protein /DB_XREF=gi:4507230 /UG=Hs.923 single-stranded DNA-binding protein /FL=gb:M94556.1 gb:NM_003143.1 NM_003143 single-stranded DNA binding protein 1, mitochondrial SSBP1 6742 NM_001256510 /// NM_001256511 /// NM_001256512 /// NM_001256513 /// NM_003143 /// NR_046269 /// XM_005250048 /// XM_005250049 /// XM_005250050 /// XM_005250051 0006260 // DNA replication // inferred from electronic annotation /// 0051096 // positive regulation of helicase activity // inferred from direct assay /// 0070584 // mitochondrion morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 120.50 554.08 3.29 0.01 0.03 -4.49
41577_at 41577_at AB020630 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB020630:Homo sapiens mRNA for KIAA0823 protein, partial cds /cds=(0,1239) /gb=AB020630 /gi=4240131 /ug=Hs.45719 /len=5597 AB020630 protein phosphatase 1, regulatory subunit 16B PPP1R16B 26051 NM_001172735 /// NM_015568 0007165 // signal transduction // non-traceable author statement /// 0051489 // regulation of filopodium assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // non-traceable author statement -44.17 101.54 -3.29 0.01 0.03 -4.49
202804_at 202804_at AI539710 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI539710 /FEA=EST /DB_XREF=gi:4453845 /DB_XREF=est:tp77b05.x1 /CLONE=IMAGE:2205297 /UG=Hs.89433 ATP-binding cassette, sub-family C (CFTRMRP), member 1 /FL=gb:L05628.1 gb:NM_004996.2 AI539710 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 ABCC1 4363 NM_004996 /// NM_019862 /// NM_019898 /// NM_019899 /// NM_019900 /// NM_019901 /// NM_019902 /// XM_005255327 /// XM_005255328 /// XM_005255329 /// XM_006720884 /// XM_006720885 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006691 // leukotriene metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009235 // cobalamin metabolic process // traceable author statement /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0042493 // response to drug // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation -66.07 366.19 -3.29 0.01 0.03 -4.49
201253_s_at 201253_s_at NM_006319 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006319.1 /DEF=Homo sapiens CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) (CDIPT), mRNA. /FEA=mRNA /GEN=CDIPT /PROD=CDP-diacylglycerol--inositol3-phosphatidyltransferase (phosphatidylinositol synthase) /DB_XREF=gi:5453905 /UG=Hs.227107 CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) /FL=gb:BC001444.1 gb:AF014807.1 gb:NM_006319.1 NM_006319 CDP-diacylglycerol--inositol 3-phosphatidyltransferase CDIPT 10423 NM_001286585 /// NM_001286586 /// NM_006319 /// NM_145752 /// XM_005255038 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // inferred from direct assay /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046341 // CDP-diacylglycerol metabolic process // inferred from electronic annotation /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay 0003881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // inferred from direct assay /// 0003881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation /// 0019992 // diacylglycerol binding // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043178 // alcohol binding // inferred from electronic annotation 59.98 258.76 3.29 0.01 0.03 -4.49
209566_at 209566_at AL080184 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080184.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434O071 (from clone DKFZp434O071). /FEA=mRNA /DB_XREF=gi:5262661 /UG=Hs.7089 insulin induced protein 2 /FL=gb:AF125392.1 AL080184 insulin induced gene 2 INSIG2 51141 NM_016133 /// XM_005263690 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006991 // response to sterol depletion // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010894 // negative regulation of steroid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0032933 // SREBP signaling pathway // inferred from direct assay /// 0033993 // response to lipid // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation /// 0070542 // response to fatty acid // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation 31.25 133.28 3.29 0.01 0.03 -4.49
210201_x_at 210201_x_at AF001383 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF001383.1 /DEF=Homo sapiens amphiphysin II mRNA, complete cds. /FEA=mRNA /PROD=amphiphysin II /DB_XREF=gi:2199534 /UG=Hs.193163 bridging integrator 1 /FL=gb:AF001383.1 gb:AF068917.1 AF001383 bridging integrator 1 BIN1 274 NM_004305 /// NM_139343 /// NM_139344 /// NM_139345 /// NM_139346 /// NM_139347 /// NM_139348 /// NM_139349 /// NM_139350 /// NM_139351 /// XM_005263642 /// XM_005263643 /// XM_005263644 /// XM_005263645 /// XM_005263646 /// XM_005263647 /// XM_005263648 /// XM_006712424 /// XM_006712425 /// XM_006712426 /// XM_006712427 /// XM_006712428 /// XM_006712429 /// XM_006712430 /// XM_006712431 /// XM_006712432 /// XM_006712433 /// XM_006712434 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from mutant phenotype /// 0060988 // lipid tube assembly // inferred from mutant phenotype /// 0071156 // regulation of cell cycle arrest // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030018 // Z disc // inferred from sequence or structural similarity /// 0030315 // T-tubule // inferred from sequence or structural similarity /// 0030424 // axon // inferred from direct assay /// 0031674 // I band // inferred from sequence or structural similarity /// 0033268 // node of Ranvier // inferred from sequence or structural similarity /// 0043194 // axon initial segment // inferred from sequence or structural similarity /// 0043196 // varicosity // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0044300 // cerebellar mossy fiber // inferred from electronic annotation /// 0060987 // lipid tube // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from physical interaction /// 0051020 // GTPase binding // inferred from electronic annotation -80.60 160.22 -3.29 0.01 0.03 -4.49
215631_s_at 215631_s_at AL050008 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050008.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564A063 (from clone DKFZp564A063); partial cds. /FEA=mRNA /GEN=DKFZp564A063 /PROD=hypothetical protein /DB_XREF=gi:4884078 /UG=Hs.306186 DKFZP564A063 protein AL050008 breast cancer metastasis suppressor 1 BRMS1 25855 NM_001024957 /// NM_001024958 /// NM_015399 /// XM_005273883 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0090312 // positive regulation of protein deacetylation // inferred from direct assay /// 2000210 // positive regulation of anoikis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from direct assay 52.18 139.26 3.29 0.01 0.03 -4.49
217832_at 217832_at BE672181 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE672181 /FEA=EST /DB_XREF=gi:10032712 /DB_XREF=est:7b51c08.x1 /CLONE=IMAGE:3231758 /UG=Hs.155489 NS1-associated protein 1 /FL=gb:AF155568.1 gb:NM_006372.1 BE672181 synaptotagmin binding, cytoplasmic RNA interacting protein SYNCRIP 10492 NM_001159673 /// NM_001159674 /// NM_001159675 /// NM_001159676 /// NM_001159677 /// NM_001253771 /// NM_006372 /// XM_005248635 /// XM_005248636 /// XM_005248637 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity /// 0097452 // GAIT complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 100.88 358.06 3.29 0.01 0.03 -4.49
212826_s_at 212826_s_at AI961224 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI961224 /FEA=EST /DB_XREF=gi:5753937 /DB_XREF=est:wt15b11.x1 /CLONE=IMAGE:2507517 /UG=Hs.164280 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 AI961224 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 SLC25A6 293 NM_001636 0006112 // energy reserve metabolic process // traceable author statement /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0015866 // ADP transport // non-traceable author statement /// 0015867 // ATP transport // non-traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046732 // active induction of host immune response by virus // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005744 // mitochondrial inner membrane presequence translocase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005471 // ATP:ADP antiporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction -417.37 1884.21 -3.29 0.01 0.03 -4.49
209000_s_at 209000_s_at BC001329 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001329.1 /DEF=Homo sapiens, Similar to hypothetical protein FLJ10849, clone MGC:5557, mRNA, complete cds. /FEA=mRNA /PROD=Similar to hypothetical protein FLJ10849 /DB_XREF=gi:12654962 /UG=Hs.80712 KIAA0202 protein /FL=gb:BC001329.1 BC001329 septin 8 SEPT8 23176 NM_001098811 /// NM_001098812 /// NM_001098813 /// NM_015146 /// XM_005271927 /// XM_005271928 /// XM_005271929 /// XM_005271930 /// XM_005271931 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 37.80 34.85 3.29 0.01 0.03 -4.49
212565_at 212565_at BE302191 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE302191 /FEA=EST /DB_XREF=gi:9185939 /DB_XREF=est:bb82f05.x1 /CLONE=IMAGE:3048897 /UG=Hs.184523 KIAA0965 protein BE302191 serine/threonine kinase 38 like STK38L 23012 NM_015000 /// XM_005253342 /// XM_005253343 /// XM_006719058 /// XM_006719059 0006468 // protein phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0051128 // regulation of cellular component organization // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 31.12 38.69 3.28 0.01 0.03 -4.49
37462_i_at 37462_i_at L21990 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. L21990:Human spliceosomal protein (SAP 62) gene, complete cds /cds=(0,1394) /gb=L21990 /gi=409218 /ug=Hs.115232 /len=1395 L21990 splicing factor 3a, subunit 2, 66kDa SF3A2 8175 NM_007165 0000389 // mRNA 3'-splice site recognition // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from mutant phenotype /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 46.58 129.26 3.28 0.01 0.03 -4.49
218764_at 218764_at NM_024064 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024064.1 /DEF=Homo sapiens hypothetical protein MGC5363 (MGC5363), mRNA. /FEA=mRNA /GEN=MGC5363 /PROD=hypothetical protein MGC5363 /DB_XREF=gi:13129041 /UG=Hs.1880 hypothetical protein MGC5363 /FL=gb:BC001000.2 gb:NM_024064.1 NM_024064 protein kinase C, eta PRKCH 5583 NM_006255 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0034351 // negative regulation of glial cell apoptotic process // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0045618 // positive regulation of keratinocyte differentiation // inferred from sequence or structural similarity /// 0050861 // positive regulation of B cell receptor signaling pathway // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0060252 // positive regulation of glial cell proliferation // inferred from mutant phenotype /// 0070528 // protein kinase C signaling // inferred from electronic annotation /// 2000810 // regulation of tight junction assembly // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // traceable author statement /// 0004699 // calcium-independent protein kinase C activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017160 // Ral GTPase binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 67.73 360.79 3.28 0.01 0.03 -4.49
200071_at 200071_at BF224259 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF224259 /FEA=EST /DB_XREF=gi:11131523 /DB_XREF=est:7q85c09.x1 /CLONE=IMAGE:3705208 /UG=Hs.79968 splicing factor 30, survival of motor neuron-related /FL=gb:AF083385.1 gb:AF107463.1 gb:NM_005871.1 BF224259 survival motor neuron domain containing 1 SMNDC1 10285 NM_005871 /// XM_005269382 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 61.90 208.53 3.28 0.01 0.03 -4.49
202471_s_at 202471_s_at NM_004135 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004135.1 /DEF=Homo sapiens isocitrate dehydrogenase 3 (NAD+) gamma (IDH3G), mRNA. /FEA=mRNA /GEN=IDH3G /PROD=isocitrate dehydrogenase 3 (NAD+) gamma /DB_XREF=gi:4758581 /UG=Hs.75253 isocitrate dehydrogenase 3 (NAD+) gamma /FL=gb:BC001902.1 gb:BC000933.2 gb:U40272.1 gb:NM_004135.1 NM_004135 isocitrate dehydrogenase 3 (NAD+) gamma IDH3G 3421 NM_004135 /// NM_174869 0005975 // carbohydrate metabolic process // non-traceable author statement /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006102 // isocitrate metabolic process // inferred from sequence or structural similarity /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 54.93 115.04 3.28 0.01 0.03 -4.49
211931_s_at 211931_s_at BG505670 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG505670 /FEA=EST /DB_XREF=gi:13467187 /DB_XREF=est:602549833F1 /CLONE=IMAGE:4657424 /UG=Hs.249247 heterogeneous nuclear protein similar to rat helix destabilizing protein BG505670 heterogeneous nuclear ribonucleoprotein A3 /// heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 HNRNPA3 /// HNRNPA3P1 10151 /// 220988 NM_194247 /// NR_002726 /// XM_005246380 /// XM_005246381 /// XM_005246382 /// XM_006712365 /// XR_427076 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 124.30 531.10 3.27 0.01 0.03 -4.49
201665_x_at 201665_x_at NM_001021 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001021.1 /DEF=Homo sapiens ribosomal protein S17 (RPS17), mRNA. /FEA=mRNA /GEN=RPS17 /PROD=ribosomal protein S17 /DB_XREF=gi:4506692 /UG=Hs.5174 ribosomal protein S17 /FL=gb:M13932.1 gb:NM_001021.1 NM_001021 ribosomal protein S17 RPS17 6218 NM_001021 /// NM_001199057 /// NR_111943 /// NR_111944 0000028 // ribosomal small subunit assembly // not recorded /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // non-traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034101 // erythrocyte homeostasis // inferred from mutant phenotype /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -1067.47 3551.06 -3.27 0.01 0.03 -4.49
209332_s_at 209332_s_at BC003525 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003525.1 /DEF=Homo sapiens, Similar to Max, clone MGC:10775, mRNA, complete cds. /FEA=mRNA /PROD=Similar to Max /DB_XREF=gi:13097617 /UG=Hs.42712 MAX protein /FL=gb:BC003525.1 BC003525 MYC associated factor X MAX 4149 NM_001271068 /// NM_001271069 /// NM_002382 /// NM_145112 /// NM_145113 /// NM_145114 /// NM_145116 /// NM_197957 /// NR_073137 /// NR_073138 /// XR_429315 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0071339 // MLL1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -83.23 487.11 -3.27 0.01 0.03 -4.49
209003_at 209003_at AF070548 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF070548.1 /DEF=Homo sapiens clone 24408 2-oxoglutarate carrier protein mRNA, complete cds. /FEA=mRNA /PROD=2-oxoglutarate carrier protein /DB_XREF=gi:3387910 /UG=Hs.184877 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 /FL=gb:AF070548.1 AF070548 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 SLC25A11 8402 NM_001165417 /// NM_001165418 /// NM_003562 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006810 // transport // traceable author statement /// 0015742 // alpha-ketoglutarate transport // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015367 // oxoglutarate:malate antiporter activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 32.12 179.11 3.27 0.01 0.03 -4.49
206222_at 206222_at NM_003841 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003841.1 /DEF=Homo sapiens tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain (TNFRSF10C), mRNA. /FEA=mRNA /GEN=TNFRSF10C /PROD=tumor necrosis factor receptor superfamily,member 10c, decoy without an intracellular domain /DB_XREF=gi:10835042 /UG=Hs.119684 tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain /FL=gb:NM_003841.1 gb:AF012629.1 gb:AF020502.1 gb:AF016267.1 gb:AF033854.1 gb:AF014794.1 NM_003841 tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain TNFRSF10C 8794 NM_003841 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0045569 // TRAIL binding // inferred from electronic annotation 51.55 81.58 3.27 0.01 0.03 -4.49
201218_at 201218_at N23018 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N23018 /FEA=EST /DB_XREF=gi:1137168 /DB_XREF=est:yx65d12.s1 /CLONE=IMAGE:266615 /UG=Hs.171391 C-terminal binding protein 2 /FL=gb:AF016507.1 gb:NM_001329.1 N23018 C-terminal binding protein 2 CTBP2 1488 NM_001083914 /// NM_001290214 /// NM_001290215 /// NM_001329 /// NM_022802 /// XM_005269561 /// XM_005269562 /// XM_005269563 /// XM_005269564 /// XM_005269565 /// XM_005269567 /// XM_005269568 /// XM_005269569 /// XM_005269570 /// XM_005269571 /// XM_005269572 /// XM_006717641 /// XM_006717642 /// XM_006717643 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0019079 // viral genome replication // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 90.22 354.61 3.27 0.01 0.03 -4.49
200745_s_at 200745_s_at AF070603 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF070603.1 /DEF=Homo sapiens clone 24584 beta-subunit signal transducing proteins GSGI mRNA, partial cds. /FEA=mRNA /PROD=beta-subunit signal transducing proteins GSGI /DB_XREF=gi:3387983 /UG=Hs.215595 guanine nucleotide binding protein (G protein), beta polypeptide 1 /FL=gb:NM_002074.1 gb:BC004186.1 AF070603 guanine nucleotide binding protein (G protein), beta polypeptide 1 GNB1 2782 NM_001282538 /// NM_001282539 /// NM_002074 0006112 // energy reserve metabolic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007213 // G-protein coupled acetylcholine receptor signaling pathway // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005622 // intracellular // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from electronic annotation /// 0042622 // photoreceptor outer segment membrane // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097381 // photoreceptor disc membrane // traceable author statement 0003924 // GTPase activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0051020 // GTPase binding // inferred from physical interaction -119.57 904.74 -3.27 0.01 0.03 -4.49
205548_s_at 205548_s_at NM_006806 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006806.1 /DEF=Homo sapiens BTG family, member 3 (BTG3), mRNA. /FEA=mRNA /GEN=BTG3 /PROD=BTG family, member 3 /DB_XREF=gi:5802989 /UG=Hs.77311 BTG family, member 3 /FL=gb:D64110.1 gb:NM_006806.1 NM_006806 BTG family, member 3 BTG3 10950 NM_001130914 /// NM_006806 /// XM_006723963 0008285 // negative regulation of cell proliferation // traceable author statement /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -36.70 243.95 -3.27 0.01 0.03 -4.49
212520_s_at 212520_s_at AI684141 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI684141 /FEA=EST /DB_XREF=gi:4895435 /DB_XREF=est:tx79f11.x1 /CLONE=IMAGE:2275821 /UG=Hs.78202 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 AI684141 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 SMARCA4 6597 NM_001128844 /// NM_001128845 /// NM_001128846 /// NM_001128847 /// NM_001128848 /// NM_001128849 /// NM_003072 /// XM_005260028 /// XM_005260030 /// XM_005260031 /// XM_005260032 /// XM_005260033 /// XM_005260034 /// XM_005260035 /// XM_006722845 /// XM_006722846 /// XM_006722847 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003407 // neural retina development // inferred from expression pattern /// 0006200 // ATP catabolic process // inferred from genetic interaction /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred by curator /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007070 // negative regulation of transcription from RNA polymerase II promoter during mitosis // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035887 // aortic smooth muscle cell differentiation // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0002039 // p53 binding // inferred from physical interaction /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from genetic interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042393 // histone binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay 34.37 112.76 3.27 0.01 0.03 -4.49
208118_x_at 208118_x_at NM_031211 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031211.1 /DEF=Homo sapiens LAT1-3TM protein (LAT1-3TM), mRNA. /FEA=mRNA /GEN=LAT1-3TM /PROD=LAT1-3TM protein /DB_XREF=gi:13654279 /FL=gb:NM_031211.1 NM_031211 putative L-type amino acid transporter 1-like protein IMAA-like /// solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 /// solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 /// SMG1 pseudogene 3 LOC101060604 /// SLC7A5P1 /// SLC7A5P2 /// SMG1P3 81893 /// 387254 /// 100271836 /// 101060604 NM_031211 /// NR_002593 /// NR_002594 /// NR_027155 /// XM_005276494 /// XM_006726608 /// XM_006726609 0003333 // amino acid transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation -47.13 125.21 -3.27 0.01 0.03 -4.49
212798_s_at 212798_s_at AK001389 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001389.1 /DEF=Homo sapiens cDNA FLJ10527 fis, clone NT2RP2000932, highly similar to Homo sapiens mRNA; cDNA DKFZp564O043. /FEA=mRNA /DB_XREF=gi:7022618 /UG=Hs.15144 hypothetical protein DKFZp564O043 AK001389 ankyrin repeat and MYND domain containing 2 ANKMY2 57037 NM_020319 0005929 // cilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 36.10 107.75 3.27 0.01 0.03 -4.49
218501_at 218501_at NM_019555 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019555.1 /DEF=Homo sapiens Rho guanine nucleotide exchange factor (GEF) 3 (ARHGEF3), mRNA. /FEA=mRNA /GEN=ARHGEF3 /PROD=Rho guanine nucleotide exchange factor (GEF) 3 /DB_XREF=gi:9506400 /UG=Hs.25951 Rho guanine nucleotide exchange factor (GEF) 3 /FL=gb:AF249744.1 gb:NM_019555.1 NM_019555 Rho guanine nucleotide exchange factor (GEF) 3 ARHGEF3 50650 NM_001128615 /// NM_001128616 /// NM_001289698 /// NM_019555 /// XM_005265186 /// XM_005265187 /// XM_005265188 /// XM_005265189 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // traceable author statement /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation -53.75 189.78 -3.26 0.01 0.03 -4.49
209046_s_at 209046_s_at AB030710 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB030710.1 /DEF=Homo sapiens FLC3A mRNA for MAP1 light chain 3 related protein, complete cds. /FEA=mRNA /GEN=FLC3A /PROD=MAP1 light chain 3 related protein /DB_XREF=gi:12641848 /UG=Hs.6518 ganglioside expression factor 2 /FL=gb:AB030710.1 gb:AF087848.1 gb:AF077046.1 gb:NM_007285.1 AB030710 GABA(A) receptor-associated protein-like 2 GABARAPL2 11345 NM_007285 0000045 // autophagic vacuole assembly // not recorded /// 0000422 // mitochondrion degradation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0006914 // autophagy // non-traceable author statement /// 0006995 // cellular response to nitrogen starvation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0032258 // CVT pathway // not recorded /// 0032781 // positive regulation of ATPase activity // inferred from sequence or structural similarity /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0044805 // late nucleophagy // not recorded /// 0071211 // protein targeting to vacuole involved in autophagy // not recorded /// 1901799 // negative regulation of proteasomal protein catabolic process // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000407 // pre-autophagosomal structure // not recorded /// 0000421 // autophagic vacuole membrane // inferred from direct assay /// 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000149 // SNARE binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // non-traceable author statement /// 0008429 // phosphatidylethanolamine binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0050811 // GABA receptor binding // inferred from sequence or structural similarity /// 0050811 // GABA receptor binding // non-traceable author statement /// 0051117 // ATPase binding // inferred from sequence or structural similarity 121.33 516.24 3.26 0.01 0.03 -4.49
217789_at 217789_at NM_021249 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021249.1 /DEF=Homo sapiens sorting nexin 6 (SNX6), mRNA. /FEA=mRNA /GEN=SNX6 /PROD=sorting nexin 6 /DB_XREF=gi:13027619 /UG=Hs.284291 sorting nexin 6 /FL=gb:BC001798.1 gb:NM_021249.1 gb:AF121856.1 NM_021249 sorting nexin 6 SNX6 58533 NM_021249 /// NM_152233 /// XM_006720224 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006886 // intracellular protein transport // non-traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007175 // negative regulation of epidermal growth factor-activated receptor activity // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0042147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // not recorded /// 0042803 // protein homodimerization activity // inferred from physical interaction -69.80 261.18 -3.26 0.01 0.03 -4.49
201669_s_at 201669_s_at NM_002356 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002356.4 /DEF=Homo sapiens myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L) (MACS), mRNA. /FEA=mRNA /GEN=MACS /PROD=myristoylated alanine-rich protein kinase Csubstrate /DB_XREF=gi:11125771 /UG=Hs.75607 myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L) /FL=gb:NM_002356.4 gb:M68956.1 gb:D10522.1 NM_002356 myristoylated alanine-rich protein kinase C substrate MARCKS 4082 NM_002356 0006112 // energy reserve metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // traceable author statement -215.35 1319.58 -3.26 0.01 0.03 -4.49
202656_s_at 202656_s_at BG107456 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG107456 /FEA=EST /DB_XREF=gi:12601302 /DB_XREF=est:602277568F1 /CLONE=IMAGE:4365352 /UG=Hs.77293 KIAA0127 gene product /FL=gb:D50917.1 gb:NM_014755.1 BG107456 SERTA domain containing 2 SERTAD2 9792 NM_014755 /// XM_005264669 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -51.52 107.96 -3.26 0.01 0.03 -4.49
211972_x_at 211972_x_at AI953822 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI953822 /FEA=EST /DB_XREF=gi:5746132 /DB_XREF=est:wx69h05.x1 /CLONE=IMAGE:2548953 /UG=Hs.73742 ribosomal protein, large, P0 AI953822 ribosomal protein, large, P0 RPLP0 6175 NM_001002 /// NM_053275 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -723.45 3505.43 -3.26 0.01 0.03 -4.49
202076_at 202076_at NM_001166 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001166.2 /DEF=Homo sapiens baculoviral IAP repeat-containing 2 (BIRC2), mRNA. /FEA=mRNA /GEN=BIRC2 /PROD=baculoviral IAP repeat-containing protein 2 /DB_XREF=gi:10880127 /UG=Hs.289107 baculoviral IAP repeat-containing 2 /FL=gb:NM_001166.2 gb:U37547.1 gb:L49431.1 gb:U45879.1 NM_001166 baculoviral IAP repeat containing 2 BIRC2 329 NM_001166 /// NM_001256163 /// NM_001256166 0000209 // protein polyubiquitination // inferred from direct assay /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001890 // placenta development // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0034121 // regulation of toll-like receptor signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038061 // NIK/NF-kappaB signaling // traceable author statement /// 0039535 // regulation of RIG-I signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045088 // regulation of innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // traceable author statement /// 0050727 // regulation of inflammatory response // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from direct assay /// 0060544 // regulation of necroptotic process // inferred from mutant phenotype /// 0070266 // necroptotic process // inferred from electronic annotation /// 0070424 // regulation of nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 1902523 // positive regulation of protein K63-linked ubiquitination // inferred from direct assay /// 1902524 // positive regulation of protein K48-linked ubiquitination // inferred from direct assay /// 1902527 // positive regulation of protein monoubiquitination // inferred from direct assay /// 2000116 // regulation of cysteine-type endopeptidase activity // traceable author statement 0001741 // XY body // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009898 // cytoplasmic side of plasma membrane // inferred from sequence or structural similarity /// 0035631 // CD40 receptor complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction -129.55 639.75 -3.26 0.01 0.03 -4.49
210946_at 210946_at AF014403 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF014403.1 /DEF=Homo sapiens type-2 phosphatidic acid phosphatase alpha-2 (PAP2-a2) mRNA, complete cds. /FEA=mRNA /GEN=PAP2-a2 /PROD=type-2 phosphatidic acid phosphatase alpha-2 /DB_XREF=gi:3123849 /UG=Hs.41569 phosphatidic acid phosphatase type 2A /FL=gb:AF014403.1 AF014403 phosphatidic acid phosphatase type 2A PPAP2A 8611 NM_003711 /// NM_176895 /// NR_103485 /// XM_006714724 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0007205 // protein kinase C-activating G-protein coupled receptor signaling pathway // traceable author statement /// 0008285 // negative regulation of cell proliferation // non-traceable author statement /// 0008354 // germ cell migration // traceable author statement /// 0019216 // regulation of lipid metabolic process // non-traceable author statement /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0030518 // intracellular steroid hormone receptor signaling pathway // traceable author statement /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046839 // phospholipid dephosphorylation // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from direct assay /// 0008195 // phosphatidate phosphatase activity // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation -33.50 77.85 -3.26 0.01 0.03 -4.50
218581_at 218581_at NM_022060 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022060.1 /DEF=Homo sapiens hypothetical protein FLJ12816 (FLJ12816), mRNA. /FEA=mRNA /GEN=FLJ12816 /PROD=hypothetical protein FLJ12816 /DB_XREF=gi:11545766 /UG=Hs.9175 hypothetical protein FLJ12816 /FL=gb:NM_022060.1 NM_022060 abhydrolase domain containing 4 ABHD4 63874 NM_022060 /// XM_005267986 /// XR_245712 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation -45.27 184.56 -3.25 0.01 0.03 -4.50
219837_s_at 219837_s_at NM_018659 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018659.1 /DEF=Homo sapiens cytokine-like protein C17 (C17), mRNA. /FEA=mRNA /GEN=C17 /PROD=cytokine-like protein C17 /DB_XREF=gi:8922107 /UG=Hs.13872 cytokine-like protein C17 /FL=gb:AF193766.1 gb:NM_018659.1 NM_018659 cytokine-like 1 CYTL1 54360 NM_018659 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 0050650 // chondroitin sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 1990079 // cartilage homeostasis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement 0005102 // receptor binding // traceable author statement 107.95 238.15 3.25 0.01 0.03 -4.50
209656_s_at 209656_s_at AL136550 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136550.1 /DEF=Homo sapiens mRNA; cDNA DKFZp761J17121 (from clone DKFZp761J17121); complete cds. /FEA=mRNA /GEN=DKFZp761J17121 /PROD=hypothetical protein /DB_XREF=gi:13276606 /UG=Hs.8769 Homo sapiens mRNA; cDNA DKFZp761J17121 (from clone DKFZp761J17121); complete cds /FL=gb:AL136550.1 AL136550 transmembrane protein 47 TMEM47 83604 NM_031442 0005886 // plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 49.78 268.99 3.25 0.01 0.03 -4.50
213256_at 213256_at AW593996 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW593996 /FEA=EST /DB_XREF=gi:7281254 /DB_XREF=est:hg41g06.x1 /CLONE=IMAGE:2948218 /UG=Hs.124969 Homo sapiens clone 24707 mRNA sequence AW593996 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase MARCH3 115123 NM_178450 /// XM_005271870 0006897 // endocytosis // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -120.55 202.78 -3.25 0.01 0.03 -4.50
202742_s_at 202742_s_at NM_002731 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002731.1 /DEF=Homo sapiens protein kinase, cAMP-dependent, catalytic, beta (PRKACB), mRNA. /FEA=mRNA /GEN=PRKACB /PROD=protein kinase, cAMP-dependent, catalytic, beta /DB_XREF=gi:4506056 /UG=Hs.87773 protein kinase, cAMP-dependent, catalytic, beta /FL=gb:M34181.1 gb:NM_002731.1 NM_002731 protein kinase, cAMP-dependent, catalytic, beta PRKACB 5567 NM_001242857 /// NM_001242858 /// NM_001242859 /// NM_001242860 /// NM_001242861 /// NM_001242862 /// NM_002731 /// NM_182948 /// NM_207578 /// XM_005271015 /// XM_005271016 /// XM_005271017 /// XM_005271018 /// XM_005271019 /// XM_005271020 /// XM_005271021 /// XM_005271022 /// XM_005271023 /// XM_006710758 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // traceable author statement /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0051447 // negative regulation of meiotic cell cycle // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0097338 // response to clozapine // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005952 // cAMP-dependent protein kinase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004691 // cAMP-dependent protein kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay 74.03 197.64 3.25 0.01 0.03 -4.50
208820_at 208820_at AL037339 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL037339 /FEA=EST /DB_XREF=gi:5406748 /DB_XREF=est:DKFZp564F1271_s1 /CLONE=DKFZp564F1271 /UG=Hs.740 PTK2 protein tyrosine kinase 2 /FL=gb:L13616.1 AL037339 protein tyrosine kinase 2 PTK2 5747 NM_001199649 /// NM_005607 /// NM_153831 /// XM_005251003 /// XM_005251004 /// XM_005251005 /// XM_005251006 /// XM_005251007 /// XM_005251008 /// XM_005251009 /// XM_005251010 /// XM_005251011 /// XM_005251012 /// XM_005251013 /// XM_005251014 /// XM_006716606 /// XM_006716607 /// XM_006716608 /// XM_006716609 /// XM_006716610 0000165 // MAPK cascade // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001525 // angiogenesis // traceable author statement /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001890 // placenta development // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0003007 // heart morphogenesis // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007172 // signal complex assembly // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // traceable author statement /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0009790 // embryo development // traceable author statement /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010594 // regulation of endothelial cell migration // traceable author statement /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from mutant phenotype /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // inferred from direct assay /// 0030010 // establishment of cell polarity // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0038007 // netrin-activated signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0040023 // establishment of nucleus localization // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // inferred from electronic annotation /// 0046621 // negative regulation of organ growth // inferred from electronic annotation /// 0046685 // response to arsenic-containing substance // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048870 // cell motility // traceable author statement /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // traceable author statement /// 0051893 // regulation of focal adhesion assembly // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0051964 // negative regulation of synapse assembly // inferred from electronic annotation /// 0060252 // positive regulation of glial cell proliferation // inferred from electronic annotation /// 0060396 // growth hormone receptor signaling pathway // inferred from direct assay /// 2000060 // positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0004672 // protein kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008432 // JUN kinase binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation -48.32 320.84 -3.25 0.01 0.03 -4.50
208744_x_at 208744_x_at BG403660 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG403660 /FEA=EST /DB_XREF=gi:13297108 /DB_XREF=est:602419382F1 /CLONE=IMAGE:4526180 /UG=Hs.36927 heat shock 105kD /FL=gb:D86956.1 gb:AB003334.1 BG403660 heat shock 105kDa/110kDa protein 1 HSPH1 10808 NM_001286503 /// NM_001286504 /// NM_001286505 /// NM_006644 /// XM_005266236 /// XM_006719757 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0045345 // positive regulation of MHC class I biosynthetic process // traceable author statement /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051135 // positive regulation of NK T cell activation // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // inferred from electronic annotation 56.92 92.74 3.25 0.01 0.03 -4.50
218496_at 218496_at BG534527 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG534527 /FEA=EST /DB_XREF=gi:13526067 /DB_XREF=est:602553771F1 /CLONE=IMAGE:4663504 /UG=Hs.178655 ribonuclease H1 /FL=gb:BC002973.1 gb:AF048994.1 gb:AF048995.1 gb:AF039652.1 gb:NM_002936.1 BG534527 ribonuclease H1 RNASEH1 246243 NM_001286834 /// NM_001286837 /// NM_002936 /// XR_244873 0006264 // mitochondrial DNA replication // inferred from electronic annotation /// 0006401 // RNA catabolic process // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // traceable author statement /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004523 // RNA-DNA hybrid ribonuclease activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 51.00 102.50 3.24 0.01 0.03 -4.50
203848_at 203848_at AL050160 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050160.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586B1222 (from clone DKFZp586B1222); partial cds. /FEA=mRNA /GEN=DKFZp586B1222 /PROD=hypothetical protein /DB_XREF=gi:4884373 /UG=Hs.25059 A kinase (PRKA) anchor protein 8 /FL=gb:NM_005858.1 AL050160 A kinase (PRKA) anchor protein 8 AKAP8 10270 NM_005858 /// XM_005259706 /// XR_244062 0006810 // transport // inferred from electronic annotation /// 0007067 // mitotic nuclear division // traceable author statement /// 0007076 // mitotic chromosome condensation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0000793 // condensed chromosome // inferred from electronic annotation /// 0001939 // female pronucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0034237 // protein kinase A regulatory subunit binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 35.17 65.89 3.24 0.01 0.03 -4.50
221831_at 221831_at AV741657 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV741657 /FEA=EST /DB_XREF=gi:10859238 /DB_XREF=est:AV741657 /CLONE=CBMALG01 /UG=Hs.154085 leucine zipper protein 1 AV741657 leucine zipper protein 1 LUZP1 7798 NM_001142546 /// NM_033631 0003281 // ventricular septum development // inferred from electronic annotation /// 0021503 // neural fold bending // inferred from electronic annotation /// 0060840 // artery development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 59.55 81.12 3.24 0.01 0.03 -4.50
219001_s_at 219001_s_at NM_024345 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024345.1 /DEF=Homo sapiens hypothetical protein MGC10765 (MGC10765), mRNA. /FEA=mRNA /GEN=MGC10765 /PROD=hypothetical protein MGC10765 /DB_XREF=gi:13236596 /UG=Hs.317589 hypothetical protein MGC10765 /FL=gb:BC003520.1 gb:NM_024345.1 NM_024345 DDB1 and CUL4 associated factor 10 DCAF10 79269 NM_001286810 /// NM_024345 /// XM_005251577 /// XM_005251578 0016567 // protein ubiquitination // inferred by curator /// 0016567 // protein ubiquitination // inferred from electronic annotation 0080008 // Cul4-RING E3 ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 37.55 49.35 3.24 0.01 0.03 -4.50
207654_x_at 207654_x_at NM_001938 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001938.1 /DEF=Homo sapiens down-regulator of transcription 1, TBP-binding (negative cofactor 2) (DR1), mRNA. /FEA=mRNA /GEN=DR1 /PROD=down-regulator of transcription 1 /DB_XREF=gi:4503380 /UG=Hs.16697 down-regulator of transcription 1, TBP-binding (negative cofactor 2) /FL=gb:M97388.1 gb:NM_001938.1 NM_001938 down-regulator of transcription 1, TBP-binding (negative cofactor 2) DR1 1810 NM_001938 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // traceable author statement /// 0017025 // TBP-class protein binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -61.90 248.25 -3.24 0.01 0.03 -4.50
202713_s_at 202713_s_at AA129755 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA129755 /FEA=EST /DB_XREF=gi:1690165 /DB_XREF=est:zl16b10.s1 /CLONE=IMAGE:502075 /UG=Hs.154668 KIAA0391 gene product /FL=gb:AB002389.1 gb:NM_014672.1 AA129755 KIAA0391 /// proteasome (prosome, macropain) subunit, alpha type, 6 KIAA0391 /// PSMA6 5687 /// 9692 NM_001256678 /// NM_001256679 /// NM_001256680 /// NM_001256681 /// NM_001282232 /// NM_001282233 /// NM_001282234 /// NM_002791 /// NM_014672 /// NR_104110 /// XM_005268237 /// XM_006720334 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0008033 // tRNA processing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050727 // regulation of inflammatory response // inferred by curator /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from mutant phenotype 0000502 // proteasome complex // inferred from electronic annotation /// 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0005839 // proteasome core complex // non-traceable author statement /// 0005844 // polysome // inferred from direct assay /// 0016363 // nuclear matrix // inferred from sequence or structural similarity /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from direct assay /// 0019773 // proteasome core complex, alpha-subunit complex // traceable author statement /// 0030016 // myofibril // inferred from sequence or structural similarity /// 0030017 // sarcomere // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0004175 // endopeptidase activity // non-traceable author statement /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035639 // purine ribonucleoside triphosphate binding // non-traceable author statement /// 0051059 // NF-kappaB binding // inferred from physical interaction 46.33 150.76 3.24 0.01 0.03 -4.50
210076_x_at 210076_x_at AF151813 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF151813.1 /DEF=Homo sapiens CGI-55 protein mRNA, complete cds. /FEA=mRNA /PROD=CGI-55 protein /DB_XREF=gi:4929578 /UG=Hs.165998 PAI-1 mRNA-binding protein /FL=gb:AF151813.1 AF151813 SERPINE1 mRNA binding protein 1 SERBP1 26135 NM_001018067 /// NM_001018068 /// NM_001018069 /// NM_015640 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 150.77 394.11 3.24 0.01 0.03 -4.50
219097_x_at 219097_x_at NM_024104 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024104.1 /DEF=Homo sapiens hypothetical protein MGC2747 (MGC2747), mRNA. /FEA=mRNA /GEN=MGC2747 /PROD=hypothetical protein MGC2747 /DB_XREF=gi:13129111 /UG=Hs.227203 hypothetical protein MGC2747 /FL=gb:BC001680.1 gb:BC001948.1 gb:NM_024104.1 NM_024104 small integral membrane protein 7 SMIM7 79086 NM_024104 /// XM_005260074 /// XR_244083 /// XR_244084 /// XR_244085 /// XR_244086 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 80.33 170.31 3.23 0.01 0.03 -4.50
206461_x_at 206461_x_at NM_005951 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005951.1 /DEF=Homo sapiens metallothionein 1H (MT1H), mRNA. /FEA=mRNA /GEN=MT1H /PROD=metallothionein 1H /DB_XREF=gi:10835084 /UG=Hs.2667 metallothionein 1H /FL=gb:NM_005951.1 NM_005951 metallothionein 1H MT1H 4496 NM_005951 0045926 // negative regulation of growth // inferred from sequence or structural similarity /// 0071276 // cellular response to cadmium ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from expression pattern 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -1278.83 2444.66 -3.23 0.01 0.03 -4.50
204519_s_at 204519_s_at NM_015993 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015993.1 /DEF=Homo sapiens plasmolipin (LOC51090), mRNA. /FEA=mRNA /GEN=LOC51090 /PROD=plasmolipin /DB_XREF=gi:7705754 /UG=Hs.12701 plasmolipin /FL=gb:AF137386.1 gb:NM_015993.1 NM_015993 plasmolipin PLLP 51090 NM_015993 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043218 // compact myelin // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay -38.00 65.15 -3.23 0.01 0.03 -4.50
213340_s_at 213340_s_at AI073551 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI073551 /FEA=EST /DB_XREF=gi:3400195 /DB_XREF=est:ov45e10.x1 /CLONE=IMAGE:1640298 /UG=Hs.49658 KIAA0495 AI073551 TP73 antisense RNA 1 TP73-AS1 57212 NM_207306 /// NR_033708 /// NR_033709 /// NR_033710 /// NR_033711 /// NR_033712 0005576 // extracellular region // inferred from electronic annotation 32.28 95.31 3.23 0.01 0.03 -4.50
200065_s_at 200065_s_at AF052179 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF052179.1 /DEF=Homo sapiens clone 24537 ADP-ribosylation factor 1 mRNA, complete cds. /FEA=mRNA /PROD=ADP-ribosylation factor 1 /DB_XREF=gi:3360490 /UG=Hs.74571 ADP-ribosylation factor 1 /FL=gb:M84326.1 gb:M36340.1 gb:AF055002.1 gb:AF052179.1 gb:NM_001658.2 AF052179 ADP-ribosylation factor 1 /// microRNA 3620 ARF1 /// MIR3620 375 /// 100500810 NM_001024226 /// NM_001024227 /// NM_001024228 /// NM_001658 /// NR_037415 0002090 // regulation of receptor internalization // inferred from sequence or structural similarity /// 0006184 // GTP catabolic process // traceable author statement /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from mutant phenotype /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0034315 // regulation of Arp2/3 complex-mediated actin nucleation // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0060292 // long term synaptic depression // inferred from sequence or structural similarity /// 0061024 // membrane organization // traceable author statement /// 0097061 // dendritic spine organization // inferred from sequence or structural similarity 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0012505 // endomembrane system // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -229.82 1474.66 -3.23 0.01 0.03 -4.50
218316_at 218316_at NM_012460 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012460.1 /DEF=Homo sapiens translocase of inner mitochondrial membrane 9 (yeast) homolog (TIMM9), mRNA. /FEA=mRNA /GEN=TIMM9 /PROD=translocase of inner mitochondrial membrane 9(yeast) homolog /DB_XREF=gi:6912713 /UG=Hs.323914 translocase of inner mitochondrial membrane 9 (yeast) homolog /FL=gb:AF150100.1 gb:AF152353.1 gb:NM_012460.1 NM_012460 translocase of inner mitochondrial membrane 9 homolog (yeast) TIMM9 26520 NM_012460 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045039 // protein import into mitochondrial inner membrane // inferred from direct assay /// 0045039 // protein import into mitochondrial inner membrane // inferred from sequence or structural similarity /// 0072321 // chaperone-mediated protein transport // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from direct assay /// 0042719 // mitochondrial intermembrane space protein transporter complex // traceable author statement 0005215 // transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from physical interaction -52.30 193.00 -3.23 0.01 0.03 -4.50
213801_x_at 213801_x_at AW304232 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW304232 /FEA=EST /DB_XREF=gi:6713921 /DB_XREF=est:xv82g01.x1 /CLONE=IMAGE:2825040 /UG=Hs.181357 laminin receptor 1 (67kD, ribosomal protein SA) AW304232 ribosomal protein SA /// ribosomal protein SA pseudogene 19 /// ribosomal protein SA pseudogene 58 /// ribosomal protein SA pseudogene 9 /// small nucleolar RNA, H/ACA box 6 /// small nucleolar RNA, H/ACA box 62 RPSA /// RPSAP19 /// RPSAP58 /// RPSAP9 /// SNORA6 /// SNORA62 3921 /// 6044 /// 388524 /// 574040 /// 653162 /// 730029 NM_001005472 /// NM_001012321 /// NM_002295 /// NR_002324 /// NR_002325 /// NR_003662 /// NR_026890 0000028 // ribosomal small subunit assembly // not recorded /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000447 // endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0000461 // endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0006407 // rRNA export from nucleus // not recorded /// 0006412 // translation // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030686 // 90S preribosome // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // not recorded /// 0005055 // laminin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from physical interaction /// 0043236 // laminin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -668.92 3241.86 -3.23 0.01 0.03 -4.50
208786_s_at 208786_s_at AF183417 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF183417.1 /DEF=Homo sapiens microtubule-associated proteins 1A1B light chain 3 mRNA, complete cds. /FEA=mRNA /PROD=microtubule-associated proteins 1A1B lightchain 3 /DB_XREF=gi:9963772 /UG=Hs.121849 microtubule-associated proteins 1A1B light chain 3 /FL=gb:AF303888.1 gb:NM_022818.2 gb:AF183417.1 AF183417 microtubule-associated protein 1 light chain 3 beta MAP1LC3B 81631 NM_022818 /// XM_005256184 0000045 // autophagic vacuole assembly // not recorded /// 0000422 // mitochondrion degradation // not recorded /// 0006914 // autophagy // inferred from electronic annotation /// 0006995 // cellular response to nitrogen starvation // not recorded /// 0032258 // CVT pathway // not recorded /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0044805 // late nucleophagy // not recorded /// 0071211 // protein targeting to vacuole involved in autophagy // not recorded 0000407 // pre-autophagosomal structure // not recorded /// 0000421 // autophagic vacuole membrane // not recorded /// 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005930 // axoneme // inferred from sequence or structural similarity /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // not recorded /// 0008429 // phosphatidylethanolamine binding // not recorded /// 0050811 // GABA receptor binding // not recorded -135.58 701.16 -3.23 0.01 0.03 -4.50
208645_s_at 208645_s_at AF116710 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF116710.1 /DEF=Homo sapiens PRO2640 mRNA, complete cds. /FEA=mRNA /PROD=PRO2640 /DB_XREF=gi:7959918 /UG=Hs.244621 ribosomal protein S14 /FL=gb:BC001126.1 gb:BC003401.1 gb:NM_005617.1 gb:AF116710.1 AF116710 ribosomal protein S14 RPS14 6208 NM_001025070 /// NM_001025071 /// NM_005617 /// XM_006714790 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0000028 // ribosomal small subunit assembly // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from mutant phenotype /// 0030490 // maturation of SSU-rRNA // inferred from sequence or structural similarity /// 0044267 // cellular protein metabolic process // traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045182 // translation regulator activity // inferred from mutant phenotype /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay -1022.63 4000.26 -3.23 0.01 0.03 -4.50
203480_s_at 203480_s_at NM_014928 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014928.1 /DEF=Homo sapiens KIAA1046 protein (KIAA1046), mRNA. /FEA=mRNA /GEN=KIAA1046 /PROD=KIAA1046 protein /DB_XREF=gi:7662459 /UG=Hs.89519 KIAA1046 protein /FL=gb:AB028969.1 gb:NM_014928.1 NM_014928 OTU deubiquitinase 4 OTUD4 54726 NM_001102653 /// NM_017493 /// NM_199324 /// XM_005263079 /// XM_005263080 /// XM_005263081 0006508 // proteolysis // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // inferred from direct assay 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -130.50 325.48 -3.22 0.01 0.03 -4.50
213025_at 213025_at AL134904 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL134904 /FEA=EST /DB_XREF=gi:6603091 /DB_XREF=est:DKFZp762M0710_s1 /CLONE=DKFZp762M0710 /UG=Hs.268371 hypothetical protein FLJ20274 AL134904 THUMP domain containing 1 THUMPD1 55623 NM_017736 /// XM_005255422 /// XM_005255424 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 33.65 72.05 3.22 0.01 0.03 -4.50
209558_s_at 209558_s_at AB013384 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB013384.1 /DEF=Homo sapiens mRNA for HIP1R, complete cds. /FEA=mRNA /GEN=HIP1R /PROD=HIP1R /DB_XREF=gi:3721835 /UG=Hs.96731 huntingtin interacting protein-1-related /FL=gb:AB013384.1 AB013384 huntingtin interacting protein 1 related HIP1R 9026 NM_003959 /// XM_005253627 /// XM_005253628 /// XM_006719683 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from direct assay 78.62 143.94 3.22 0.01 0.03 -4.50
210633_x_at 210633_x_at M19156 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M19156.1 /DEF=Human acidic keratin-10 mRNA, complete cds. /FEA=mRNA /GEN=KRT10 /DB_XREF=gi:186769 /UG=Hs.99936 keratin 10 (epidermolytic hyperkeratosis; keratosis palmaris et plantaris) /FL=gb:M19156.1 M19156 keratin 10 KRT10 3858 NM_000421 /// XM_005257343 0030216 // keratinocyte differentiation // inferred from expression pattern /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005882 // intermediate filament // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0045095 // keratin filament // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0030280 // structural constituent of epidermis // non-traceable author statement 101.75 354.80 3.22 0.01 0.03 -4.50
202245_at 202245_at AW084510 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW084510 /FEA=EST /DB_XREF=gi:6039662 /DB_XREF=est:wz24g11.x1 /CLONE=IMAGE:2559044 /UG=Hs.93199 lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) /FL=gb:NM_002340.1 gb:U22526.1 AW084510 lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) LSS 4047 NM_001001438 /// NM_001145436 /// NM_001145437 /// NM_002340 /// XM_006724003 /// XM_006724004 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000250 // lanosterol synthase activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from electronic annotation 60.47 183.86 3.22 0.01 0.03 -4.50
215836_s_at 215836_s_at AK026188 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026188.1 /DEF=Homo sapiens cDNA: FLJ22535 fis, clone HRC13115, highly similar to AF152336 Homo sapiens protocadherin gamma B7 (PCDH-gamma-B7) mRNA. /FEA=mRNA /DB_XREF=gi:10438958 /UG=Hs.284180 protocadherin gamma subfamily A, 1 AK026188 protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 4 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 6 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 1 /// protocadherin gamma subfamily B, 2 /// protocadherin gamma subfamily B, 3 /// protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5 /// protocadherin gamma subfamily B, 6 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily C, 3 /// protocadherin gamma subfamily C, 4 /// protocadherin gamma subfamily C, 5 PCDHGA1 /// PCDHGA10 /// PCDHGA11 /// PCDHGA12 /// PCDHGA2 /// PCDHGA3 /// PCDHGA4 /// PCDHGA5 /// PCDHGA6 /// PCDHGA7 /// PCDHGA8 /// PCDHGA9 /// PCDHGB1 /// PCDHGB2 /// PCDHGB3 /// PCDHGB4 /// PCDHGB5 /// PCDHGB6 /// PCDHGB7 /// PCDHGC3 /// PCDHGC4 /// PCDHGC5 5098 /// 8641 /// 9708 /// 26025 /// 56097 /// 56098 /// 56099 /// 56100 /// 56101 /// 56102 /// 56103 /// 56104 /// 56105 /// 56106 /// 56107 /// 56108 /// 56109 /// 56110 /// 56111 /// 56112 /// 56113 /// 56114 NM_002588 /// NM_003735 /// NM_003736 /// NM_014004 /// NM_018912 /// NM_018913 /// NM_018914 /// NM_018915 /// NM_018916 /// NM_018917 /// NM_018918 /// NM_018919 /// NM_018920 /// NM_018921 /// NM_018922 /// NM_018923 /// NM_018924 /// NM_018925 /// NM_018926 /// NM_018927 /// NM_018928 /// NM_018929 /// NM_031993 /// NM_032009 /// NM_032011 /// NM_032053 /// NM_032054 /// NM_032086 /// NM_032087 /// NM_032088 /// NM_032089 /// NM_032090 /// NM_032091 /// NM_032092 /// NM_032094 /// NM_032095 /// NM_032096 /// NM_032097 /// NM_032098 /// NM_032099 /// NM_032100 /// NM_032101 /// NM_032402 /// NM_032403 /// NM_032406 /// NM_032407 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -87.12 298.26 -3.22 0.01 0.03 -4.50
219526_at 219526_at NM_024644 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024644.1 /DEF=Homo sapiens hypothetical protein FLJ21802 (FLJ21802), mRNA. /FEA=mRNA /GEN=FLJ21802 /PROD=hypothetical protein FLJ21802 /DB_XREF=gi:13375884 /UG=Hs.48938 hypothetical protein FLJ21802 /FL=gb:NM_024644.1 NM_024644 chromosome 14 open reading frame 169 C14orf169 79697 NM_024644 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034720 // histone H3-K4 demethylation // inferred from sequence or structural similarity /// 0045668 // negative regulation of osteoblast differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070544 // histone H3-K36 demethylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0005506 // iron ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from sequence or structural similarity /// 0032453 // histone demethylase activity (H3-K4 specific) // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation /// 0051864 // histone demethylase activity (H3-K36 specific) // inferred from sequence or structural similarity 56.00 156.05 3.22 0.01 0.03 -4.50
212053_at 212053_at AK025504 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025504.1 /DEF=Homo sapiens cDNA: FLJ21851 fis, clone HEP01962. /FEA=mRNA /DB_XREF=gi:10438041 /UG=Hs.170218 KIAA0251 protein AK025504 pyridoxal-dependent decarboxylase domain-containing protein 1-like /// pyridoxal-dependent decarboxylase domain containing 1 LOC102724985 /// PDXDC1 23042 /// 102724985 NM_001285444 /// NM_001285445 /// NM_001285447 /// NM_001285448 /// NM_001285449 /// NM_001285450 /// NM_015027 /// XM_005255173 /// XM_005255174 /// XM_005255176 /// XM_006720865 /// XM_006720866 /// XM_006725223 /// XM_006725224 /// XM_006725225 /// XM_006725226 /// XM_006725227 /// XM_006725228 /// XM_006725229 /// XM_006726595 /// XM_006726596 /// XM_006726597 /// XM_006726598 /// XM_006726599 /// XM_006726600 /// XM_006726601 0008152 // metabolic process // inferred from electronic annotation /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 45.60 216.10 3.22 0.01 0.03 -4.50
209572_s_at 209572_s_at AF080227 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF080227.1 /DEF=Homo sapiens embryonic ectoderm development protein mRNA, complete cds. /FEA=mRNA /PROD=embryonic ectoderm development protein /DB_XREF=gi:3420789 /UG=Hs.151461 embryonic ectoderm development /FL=gb:AF080227.1 gb:U90651.1 gb:AF078933.1 AF080227 embryonic ectoderm development EED 8726 NM_003797 /// NM_152991 /// XM_005274373 /// XM_006718730 /// XM_006718731 /// XR_247215 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016571 // histone methylation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement /// 0061087 // positive regulation of histone H3-K27 methylation // inferred from electronic annotation 0001739 // sex chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0035098 // ESC/E(Z) complex // inferred from direct assay /// 0045120 // pronucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042054 // histone methyltransferase activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction 44.33 84.56 3.22 0.01 0.03 -4.50
204593_s_at 204593_s_at AA046752 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA046752 /FEA=EST /DB_XREF=gi:1524716 /DB_XREF=est:zf12e10.s1 /CLONE=IMAGE:376746 /UG=Hs.240062 hypothetical protein /FL=gb:U79252.1 gb:NM_013298.1 AA046752 mitochondrial elongation factor 1 MIEF1 54471 NM_019008 /// XM_005261652 0000266 // mitochondrial fission // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // inferred from mutant phenotype /// 0090141 // positive regulation of mitochondrial fission // inferred from direct assay /// 0090141 // positive regulation of mitochondrial fission // traceable author statement /// 0090314 // positive regulation of protein targeting to membrane // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005777 // peroxisome // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019003 // GDP binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay 32.10 70.95 3.22 0.01 0.03 -4.50
74694_s_at 74694_s_at AA907940 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA907940:ol24e02.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-1524410 /clone_end=3' /gb=AA907940 /gi=3041944 /ug=Hs.234006 /len=404 AA907940 rabaptin, RAB GTPase binding effector protein 2 RABEP2 79874 NM_024816 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 36.05 77.08 3.22 0.01 0.03 -4.50
202870_s_at 202870_s_at NM_001255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001255.1 /DEF=Homo sapiens CDC20 (cell division cycle 20, S. cerevisiae, homolog) (CDC20), mRNA. /FEA=mRNA /GEN=CDC20 /PROD=cell division cycle 20 /DB_XREF=gi:4557436 /UG=Hs.82906 CDC20 (cell division cycle 20, S. cerevisiae, homolog) /FL=gb:BC001088.1 gb:AF099644.1 gb:NM_001255.1 gb:U05340.1 NM_001255 cell division cycle 20 CDC20 991 NM_001255 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031915 // positive regulation of synaptic plasticity // inferred from sequence or structural similarity /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0050773 // regulation of dendrite development // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051488 // activation of anaphase-promoting complex activity // inferred from direct assay /// 0090129 // positive regulation of synapse maturation // inferred from sequence or structural similarity 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction 57.55 154.47 3.22 0.01 0.03 -4.50
209134_s_at 209134_s_at BC000524 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000524.1 /DEF=Homo sapiens, Similar to ribosomal protein S6, clone MGC:8597, mRNA, complete cds. /FEA=mRNA /PROD=Similar to ribosomal protein S6 /DB_XREF=gi:12653504 /UG=Hs.241507 ribosomal protein S6 /FL=gb:BC000524.1 gb:J03537.1 BC000524 ribosomal protein S6 RPS6 6194 NM_001010 0000028 // ribosomal small subunit assembly // inferred from electronic annotation /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0031929 // TOR signaling // inferred from direct assay /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -754.60 3663.97 -3.21 0.01 0.03 -4.50
200999_s_at 200999_s_at NM_006825 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006825.1 /DEF=Homo sapiens transmembrane protein (63kD), endoplasmic reticulumGolgi intermediate compartment (P63), mRNA. /FEA=mRNA /GEN=P63 /PROD=transmembrane protein (63kD), endoplasmicreticulumGolgi intermediate compartment /DB_XREF=gi:5803112 /UG=Hs.74368 transmembrane protein (63kD), endoplasmic reticulumGolgi intermediate compartment /FL=gb:NM_006825.1 NM_006825 cytoskeleton-associated protein 4 CKAP4 10970 NM_006825 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0032784 // regulation of DNA-templated transcription, elongation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 325.82 1378.79 3.21 0.01 0.03 -4.50
212240_s_at 212240_s_at AI679268 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI679268 /FEA=EST /DB_XREF=gi:4889450 /DB_XREF=est:tu62e04.x1 /CLONE=IMAGE:2255646 /UG=Hs.6241 phosphoinositide-3-kinase, regulatory subunit, polypeptide 1 (p85 alpha) AI679268 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) PIK3R1 5295 NM_001242466 /// NM_181504 /// NM_181523 /// NM_181524 /// XM_005248542 0001953 // negative regulation of cell-matrix adhesion // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from physical interaction /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031295 // T cell costimulation // traceable author statement /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0034644 // cellular response to UV // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043551 // regulation of phosphatidylinositol 3-kinase activity // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // inferred from sequence or structural similarity /// 0046854 // phosphatidylinositol phosphorylation // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from direct assay /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from physical interaction /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051531 // NFAT protein import into nucleus // inferred from electronic annotation /// 0060396 // growth hormone receptor signaling pathway // inferred from direct assay /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005942 // phosphatidylinositol 3-kinase complex // inferred from sequence or structural similarity /// 0005943 // 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor activity // inferred from sequence or structural similarity /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005159 // insulin-like growth factor receptor binding // inferred from physical interaction /// 0005168 // neurotrophin TRKA receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0005545 // 1-phosphatidylinositol binding // non-traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0035014 // phosphatidylinositol 3-kinase regulator activity // inferred from sequence or structural similarity /// 0043125 // ErbB-3 class receptor binding // inferred from direct assay /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from sequence or structural similarity /// 0043559 // insulin binding // inferred from direct assay /// 0043560 // insulin receptor substrate binding // inferred from sequence or structural similarity -35.37 70.11 -3.21 0.01 0.03 -4.50
202453_s_at 202453_s_at NM_005316 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005316.1 /DEF=Homo sapiens general transcription factor IIH, polypeptide 1 (62kD subunit) (GTF2H1), mRNA. /FEA=mRNA /GEN=GTF2H1 /PROD=general transcription factor IIH, polypeptide 1(62kD subunit) /DB_XREF=gi:4885364 /UG=Hs.89578 general transcription factor IIH, polypeptide 1 (62kD subunit) /FL=gb:BC000365.1 gb:BC004452.1 gb:M95809.1 gb:NM_005316.1 NM_005316 general transcription factor IIH, polypeptide 1, 62kDa GTF2H1 2965 NM_001142307 /// NM_005316 /// XM_006718208 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006361 // transcription initiation from RNA polymerase I promoter // traceable author statement /// 0006362 // transcription elongation from RNA polymerase I promoter // traceable author statement /// 0006363 // termination of RNA polymerase I transcription // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050434 // positive regulation of viral transcription // traceable author statement 0000439 // core TFIIH complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005675 // holo TFIIH complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0004672 // protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from direct assay -32.33 115.76 -3.21 0.01 0.03 -4.50
209129_at 209129_at AF000974 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF000974.1 /DEF=Human zyxin related protein ZRP-1 mRNA, complete cds. /FEA=mRNA /PROD=ZRP-1 /DB_XREF=gi:2232135 /UG=Hs.119498 thyroid hormone receptor interactor 6 /FL=gb:BC002680.1 gb:BC004249.1 gb:BC004999.1 gb:AF000974.1 AF000974 thyroid hormone receptor interactor 6 TRIP6 7205 NM_003302 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008588 // release of cytoplasmic sequestered NF-kappaB // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0048041 // focal adhesion assembly // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0045323 // interleukin-1 receptor complex // inferred from direct assay 0005149 // interleukin-1 receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // non-traceable author statement 58.10 209.50 3.21 0.01 0.03 -4.50
208695_s_at 208695_s_at BC001019 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001019.1 /DEF=Homo sapiens, ribosomal protein L39, clone MGC:1636, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L39 /DB_XREF=gi:12654388 /UG=Hs.300141 ribosomal protein L39 /FL=gb:BC001019.1 gb:U57846.1 BC001019 ribosomal protein L39 RPL39 6170 NM_001000 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0002227 // innate immune response in mucosa // inferred from direct assay /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0019731 // antibacterial humoral response // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050830 // defense response to Gram-positive bacterium // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // traceable author statement -716.08 3469.84 -3.21 0.01 0.03 -4.50
213282_at 213282_at BE501952 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE501952 /FEA=EST /DB_XREF=gi:9704360 /DB_XREF=est:hw37d02.x1 /CLONE=IMAGE:3185091 /UG=Hs.5181 proliferation-associated 2G4, 38kD BE501952 apolipoprotein O-like APOOL 139322 NM_198450 /// XM_005262080 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 44.85 79.45 3.21 0.01 0.03 -4.50
200027_at 200027_at NM_004539 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004539.2 /DEF=Homo sapiens asparaginyl-tRNA synthetase (NARS), mRNA. /FEA=mRNA /GEN=NARS /PROD=asparaginyl-tRNA synthetase /DB_XREF=gi:7262387 /UG=Hs.181311 asparaginyl-tRNA synthetase /FL=gb:BC001687.1 gb:D84273.1 gb:NM_004539.2 NM_004539 asparaginyl-tRNA synthetase NARS 4677 NM_004539 /// XM_005266700 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006421 // asparaginyl-tRNA aminoacylation // inferred from electronic annotation /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -99.17 735.44 -3.21 0.01 0.03 -4.50
200633_at 200633_at NM_018955 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018955.1 /DEF=Homo sapiens ubiquitin B (UBB), mRNA. /FEA=mRNA /GEN=UBB /PROD=ubiquitin B /DB_XREF=gi:11024713 /UG=Hs.183842 ubiquitin B /FL=gb:NM_018955.1 gb:BC000379.1 NM_018955 ubiquitin B UBB 7314 NM_001281716 /// NM_001281717 /// NM_001281718 /// NM_001281719 /// NM_001281720 /// NM_018955 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007144 // female meiosis I // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007254 // JNK cascade // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008585 // female gonad development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010992 // ubiquitin homeostasis // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0021888 // hypothalamus gonadotrophin-releasing hormone neuron development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0032479 // regulation of type I interferon production // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060613 // fat pad development // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement /// 0072520 // seminiferous tubule development // inferred from electronic annotation /// 0075733 // intracellular transport of virus // traceable author statement /// 0097009 // energy homeostasis // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0030666 // endocytic vesicle membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction -538.62 3246.79 -3.21 0.01 0.03 -4.50
209012_at 209012_at AV718192 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV718192 /FEA=EST /DB_XREF=gi:10815344 /DB_XREF=est:AV718192 /CLONE=FHTAABE08 /UG=Hs.171957 triple functional domain (PTPRF interacting) /FL=gb:AF091395.1 AV718192 trio Rho guanine nucleotide exchange factor TRIO 7204 NM_007118 /// XM_006714495 /// XR_241714 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043087 // regulation of GTPase activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation -161.12 229.86 -3.21 0.01 0.03 -4.50
218543_s_at 218543_s_at NM_022750 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022750.1 /DEF=Homo sapiens hypothetical protein FLJ22693 (FLJ22693), mRNA. /FEA=mRNA /GEN=FLJ22693 /PROD=hypothetical protein FLJ22693 /DB_XREF=gi:12232412 /UG=Hs.12646 hypothetical protein FLJ22693 /FL=gb:AL136766.1 gb:NM_022750.1 NM_022750 poly (ADP-ribose) polymerase family, member 12 PARP12 64761 NM_022750 /// XM_005250038 /// XM_005250039 /// XM_005250040 /// XR_242188 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -47.87 195.24 -3.21 0.01 0.03 -4.50
205202_at 205202_at NM_005389 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005389.1 /DEF=Homo sapiens protein-L-isoaspartate (D-aspartate) O-methyltransferase (PCMT1), mRNA. /FEA=mRNA /GEN=PCMT1 /PROD=protein-L-isoaspartate (D-aspartate)O-methyltransferase /DB_XREF=gi:4885538 /UG=Hs.79137 protein-L-isoaspartate (D-aspartate) O-methyltransferase /FL=gb:D25545.1 gb:NM_005389.1 NM_005389 protein-L-isoaspartate (D-aspartate) O-methyltransferase PCMT1 5110 NM_001252049 /// NM_001252050 /// NM_001252051 /// NM_001252052 /// NM_001252053 /// NM_005389 0006464 // cellular protein modification process // inferred from electronic annotation /// 0006479 // protein methylation // traceable author statement /// 0030091 // protein repair // traceable author statement /// 0032259 // methylation // inferred from electronic annotation /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from electronic annotation /// 0046500 // S-adenosylmethionine metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // traceable author statement /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 44.98 169.11 3.21 0.01 0.03 -4.50
200809_x_at 200809_x_at NM_000976 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000976.1 /DEF=Homo sapiens ribosomal protein L12 (RPL12), mRNA. /FEA=mRNA /GEN=RPL12 /PROD=ribosomal protein L12 /DB_XREF=gi:4506596 /UG=Hs.182979 ribosomal protein L12 /FL=gb:L06505.1 gb:NM_000976.1 NM_000976 ribosomal protein L12 RPL12 6136 NM_000976 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -509.30 2684.03 -3.21 0.01 0.03 -4.50
209623_at 209623_at AW439494 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW439494 /FEA=EST /DB_XREF=gi:6974800 /DB_XREF=est:xt19c01.x1 /CLONE=IMAGE:2779584 /UG=Hs.167531 methylcrotonoyl-Coenzyme A carboxylase 2 (beta) /FL=gb:AB050049.1 gb:AF310971.1 gb:AF301000.1 gb:NM_022132.2 AW439494 methylcrotonoyl-CoA carboxylase 2 (beta) MCCC2 64087 NM_022132 /// XM_005248567 0006552 // leucine catabolic process // inferred from electronic annotation /// 0006552 // leucine catabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006768 // biotin metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched-chain amino acid catabolic process // traceable author statement /// 0015936 // coenzyme A metabolic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004485 // methylcrotonoyl-CoA carboxylase activity // inferred from direct assay /// 0004485 // methylcrotonoyl-CoA carboxylase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 28.48 164.46 3.20 0.01 0.03 -4.50
222258_s_at 222258_s_at AF015043 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF015043.1 /DEF=Homo sapiens EH-binding protein mRNA, partial cds. /FEA=mRNA /PROD=EH-binding protein /DB_XREF=gi:4102710 /UG=Hs.17667 SH3-domain binding protein 4 AF015043 SH3-domain binding protein 4 SH3BP4 23677 NM_014521 0006897 // endocytosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010508 // positive regulation of autophagy // inferred from mutant phenotype /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0032007 // negative regulation of TOR signaling // inferred from mutant phenotype /// 0034260 // negative regulation of GTPase activity // inferred from direct assay /// 0043090 // amino acid import // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // inferred from mutant phenotype /// 0061462 // protein localization to lysosome // inferred from mutant phenotype /// 0071230 // cellular response to amino acid stimulus // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005092 // GDP-dissociation inhibitor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0017016 // Ras GTPase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 113.45 362.07 3.20 0.01 0.03 -4.50
208692_at 208692_at U14990 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U14990.1 /DEF=Human XP1PO ribosomal protein S3 (rpS3) mRNA, complete cds. /FEA=mRNA /GEN=rpS3 /PROD=ribosomal protein S3 /DB_XREF=gi:555940 /UG=Hs.252259 ribosomal protein S3 /FL=gb:BC003137.1 gb:NM_001005.1 gb:U14990.1 gb:U14991.1 gb:U14992.1 U14990 ribosomal protein S3 RPS3 6188 NM_001005 /// NM_001256802 /// NM_001260506 /// NM_001260507 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0002181 // cytoplasmic translation // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // non-traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045738 // negative regulation of DNA repair // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from mutant phenotype /// 1900119 // positive regulation of execution phase of apoptosis // inferred from direct assay /// 1902546 // positive regulation of DNA N-glycosylase activity // inferred from direct assay /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071159 // NF-kappaB complex // inferred from direct assay 0003684 // damaged DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from direct assay /// 0004519 // endonuclease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051018 // protein kinase A binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from physical interaction /// 0051536 // iron-sulfur cluster binding // non-traceable author statement -738.30 3553.95 -3.20 0.01 0.03 -4.50
204812_at 204812_at NM_004724 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004724.1 /DEF=Homo sapiens ZW10 (Drosophila) homolog, centromerekinetochore protein (ZW10), mRNA. /FEA=mRNA /GEN=ZW10 /PROD=ZW10 (Drosophila) homolog,centromerekinetochore protein /DB_XREF=gi:4759343 /UG=Hs.13512 ZW10 (Drosophila) homolog, centromerekinetochore protein /FL=gb:U54996.1 gb:NM_004724.1 NM_004724 zw10 kinetochore protein ZW10 9183 NM_004724 /// XM_006718943 0000070 // mitotic sister chromatid segregation // inferred from direct assay /// 0000132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0006461 // protein complex assembly // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // inferred from mutant phenotype /// 0007093 // mitotic cell cycle checkpoint // inferred from direct assay /// 0007096 // regulation of exit from mitosis // inferred from direct assay /// 0007126 // meiotic nuclear division // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0034501 // protein localization to kinetochore // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005828 // kinetochore microtubule // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019237 // centromeric DNA binding // traceable author statement 45.07 235.96 3.20 0.01 0.03 -4.50
208702_x_at 208702_x_at AI525212 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI525212 /FEA=EST /DB_XREF=gi:4439347 /DB_XREF=est:pt1.1-2.A08.r /UG=Hs.279518 amyloid beta (A4) precursor-like protein 2 /FL=gb:BC000373.1 AI525212 amyloid beta (A4) precursor-like protein 2 APLP2 334 NM_001142276 /// NM_001142277 /// NM_001142278 /// NM_001243299 /// NM_001642 /// NR_024515 /// NR_024516 0001967 // suckling behavior // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // non-traceable author statement /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046914 // transition metal ion binding // inferred from electronic annotation -218.47 1031.79 -3.20 0.01 0.03 -4.50
211662_s_at 211662_s_at L08666 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L08666.1 /DEF=Homo sapiens porin (por) mRNA, complete cds and truncated cds. /FEA=mRNA /GEN=por; por /PROD=porin; porin /DB_XREF=gi:190199 /FL=gb:L08666.1 L08666 voltage-dependent anion channel 2 VDAC2 7417 NM_001184783 /// NM_001184823 /// NM_003375 /// NR_033675 /// XM_006717961 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0032272 // negative regulation of protein polymerization // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0046930 // pore complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008308 // voltage-gated anion channel activity // traceable author statement /// 0015288 // porin activity // inferred from electronic annotation -171.33 1141.46 -3.20 0.01 0.03 -4.50
208620_at 208620_at U24223 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U24223.1 /DEF=Human alpha-CP1 mRNA, complete cds. /FEA=mRNA /GEN=alpha-CP1 /PROD=alpha-CP1 /DB_XREF=gi:1215670 /UG=Hs.2853 poly(rC)-binding protein 1 /FL=gb:U24223.1 gb:NM_006196.1 U24223 poly(rC) binding protein 1 PCBP1 5093 NM_006196 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016071 // mRNA metabolic process // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -135.30 1008.30 -3.20 0.01 0.03 -4.50
210026_s_at 210026_s_at AY028896 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AY028896.1 /DEF=Homo sapiens caspase recruitment domain protein 10 mRNA, complete cds. /FEA=mRNA /PROD=caspase recruitment domain protein 10 /DB_XREF=gi:13488606 /UG=Hs.57973 hypothetical protein /FL=gb:AY028896.1 AY028896 caspase recruitment domain family, member 10 CARD10 29775 NM_014550 0006461 // protein complex assembly // non-traceable author statement /// 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0032449 // CBM complex // non-traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0030159 // receptor signaling complex scaffold activity // non-traceable author statement 42.93 110.84 3.20 0.01 0.03 -4.50
207614_s_at 207614_s_at NM_003592 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003592.1 /DEF=Homo sapiens cullin 1 (CUL1), mRNA. /FEA=mRNA /GEN=CUL1 /PROD=cullin 1 /DB_XREF=gi:4503160 /UG=Hs.14541 cullin 1 /FL=gb:U58087.1 gb:NM_003592.1 NM_003592 cullin 1 CUL1 8454 NM_003592 /// XM_005250060 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006513 // protein monoubiquitination // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation -33.28 215.91 -3.20 0.01 0.03 -4.50
222011_s_at 222011_s_at BF224073 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF224073 /FEA=EST /DB_XREF=gi:11131299 /DB_XREF=est:7q83e05.x1 /CLONE=IMAGE:3704936 /UG=Hs.278544 acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase) BF224073 small nucleolar RNA, H/ACA box 29 /// t-complex 1 SNORA29 /// TCP1 6950 /// 677812 NM_001008897 /// NM_030752 /// NR_002965 0006457 // protein folding // traceable author statement /// 0007021 // tubulin complex assembly // non-traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0000242 // pericentriolar material // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 32.58 119.09 3.20 0.01 0.03 -4.50
201217_x_at 201217_x_at NM_000967 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000967.1 /DEF=Homo sapiens ribosomal protein L3 (RPL3), mRNA. /FEA=mRNA /GEN=RPL3 /PROD=ribosomal protein L3 /DB_XREF=gi:4506648 /UG=Hs.119598 ribosomal protein L3 /FL=gb:BC002408.1 gb:BC004323.1 gb:NM_000967.1 NM_000967 RNA, U86 small nucleolar /// ribosomal protein L3 /// small nucleolar RNA, C/D box 83B RNU86 /// RPL3 /// SNORD83B 6122 /// 116936 /// 116938 NM_000967 /// NM_001033853 /// NR_000026 /// NR_000028 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -1152.55 4088.12 -3.20 0.01 0.03 -4.50
216484_x_at 216484_x_at L24521 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:L24521.1 /DEF=Human transformation-related protein mRNA, 3 end. /FEA=mRNA /PROD=transformation-related protein /DB_XREF=gi:403459 /UG=Hs.300705 Human transformation-related protein mRNA, 3 end L24521 -105.00 406.68 -3.19 0.01 0.03 -4.50
213890_x_at 213890_x_at AI200589 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI200589 /FEA=EST /DB_XREF=gi:3753195 /DB_XREF=est:qf99c03.x1 /CLONE=IMAGE:1758148 /UG=Hs.80617 ribosomal protein S16 AI200589 ribosomal protein S16 RPS16 6217 NM_001020 /// XM_005259137 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -597.45 2902.85 -3.19 0.01 0.03 -4.50
221216_s_at 221216_s_at NM_012236 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012236.1 /DEF=Homo sapiens sex comb on midleg homolog 1 (SCMH1), mRNA. /FEA=mRNA /GEN=SCMH1 /PROD=sex comb on midleg homolog 1 /DB_XREF=gi:6912641 /UG=Hs.57475 sex comb on midleg homolog 1 /FL=gb:AF149045.1 gb:NM_012236.1 NM_012236 sex comb on midleg homolog 1 (Drosophila) SCMH1 22955 NM_001031694 /// NM_001172218 /// NM_001172219 /// NM_001172220 /// NM_001172221 /// NM_001172222 /// NM_012236 /// XM_005270639 /// XM_006710462 /// XM_006710463 /// XM_006710464 /// XM_006710465 /// XM_006710466 /// XM_006710467 /// XM_006710468 /// XM_006710469 /// XM_006710470 /// XR_426594 /// XR_426595 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0016458 // gene silencing // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred by curator /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0005634 // nucleus // inferred by curator /// 0005654 // nucleoplasm // traceable author statement /// 0010369 // chromocenter // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 36.35 97.60 3.19 0.01 0.03 -4.50
218580_x_at 218580_x_at NM_017900 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017900.1 /DEF=Homo sapiens hypothetical protein FLJ20608 (FLJ20608), mRNA. /FEA=mRNA /GEN=FLJ20608 /PROD=hypothetical protein FLJ20608 /DB_XREF=gi:8923564 /UG=Hs.76239 hypothetical protein FLJ20608 /FL=gb:NM_017900.1 NM_017900 aurora kinase A interacting protein 1 AURKAIP1 54998 NM_001127229 /// NM_001127230 /// NM_017900 0045839 // negative regulation of mitosis // non-traceable author statement /// 0045862 // positive regulation of proteolysis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 63.50 320.45 3.19 0.01 0.03 -4.50
209610_s_at 209610_s_at BF340083 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF340083 /FEA=EST /DB_XREF=gi:11286545 /DB_XREF=est:602037236F1 /CLONE=IMAGE:4185248 /UG=Hs.323878 solute carrier family 1 (glutamateneutral amino acid transporter), member 4 /FL=gb:L14595.1 gb:NM_003038.1 gb:L19444.1 gb:AB026689.1 BF340083 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 SLC1A4 6509 NM_001135581 /// NM_001193493 /// NM_003038 /// XM_006712079 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006821 // chloride transport // inferred from direct assay /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0006868 // glutamine transport // traceable author statement /// 0015808 // L-alanine transport // inferred from direct assay /// 0015811 // L-cystine transport // inferred from direct assay /// 0015824 // proline transport // inferred from direct assay /// 0015825 // L-serine transport // inferred from direct assay /// 0015826 // threonine transport // inferred from direct assay /// 0034589 // hydroxyproline transport // inferred from direct assay /// 0035249 // synaptic transmission, glutamatergic // non-traceable author statement /// 0035524 // proline transmembrane transport // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement /// 1902476 // chloride transmembrane transport // inferred from direct assay 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005882 // intermediate filament // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred by curator /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0030425 // dendrite // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005254 // chloride channel activity // inferred from direct assay /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015180 // L-alanine transmembrane transporter activity // inferred from direct assay /// 0015184 // L-cystine transmembrane transporter activity // inferred from direct assay /// 0015186 // L-glutamine transmembrane transporter activity // traceable author statement /// 0015193 // L-proline transmembrane transporter activity // inferred from direct assay /// 0015194 // L-serine transmembrane transporter activity // inferred from direct assay /// 0015195 // L-threonine transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation /// 0034590 // L-hydroxyproline transmembrane transporter activity // inferred from direct assay -59.33 74.39 -3.19 0.01 0.03 -4.50
205061_s_at 205061_s_at NM_005033 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005033.1 /DEF=Homo sapiens polymyositisscleroderma autoantigen 1 (75kD) (PMSCL1), mRNA. /FEA=mRNA /GEN=PMSCL1 /PROD=polymyositisscleroderma autoantigen 1 (75kD) /DB_XREF=gi:4826921 /UG=Hs.91728 polymyositisscleroderma autoantigen 1 (75kD) /FL=gb:M58460.1 gb:NM_005033.1 NM_005033 exosome component 9 EXOSC9 5393 NM_001034194 /// NM_005033 /// XR_427545 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000956 // nuclear-transcribed mRNA catabolic process // inferred from mutant phenotype /// 0006364 // rRNA processing // non-traceable author statement /// 0006955 // immune response // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // inferred from mutant phenotype /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement /// 0071028 // nuclear mRNA surveillance // inferred from mutant phenotype /// 0071035 // nuclear polyadenylation-dependent rRNA catabolic process // inferred from mutant phenotype /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // non-traceable author statement 0000176 // nuclear exosome (RNase complex) // inferred from direct assay /// 0000176 // nuclear exosome (RNase complex) // non-traceable author statement /// 0000178 // exosome (RNase complex) // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0000175 // 3'-5'-exoribonuclease activity // non-traceable author statement /// 0003723 // RNA binding // non-traceable author statement /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004532 // exoribonuclease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017091 // AU-rich element binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 70.70 90.55 3.19 0.01 0.03 -4.50
217964_at 217964_at NM_017775 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017775.1 /DEF=Homo sapiens hypothetical protein FLJ20343 (FLJ20343), mRNA. /FEA=mRNA /GEN=FLJ20343 /PROD=hypothetical protein FLJ20343 /DB_XREF=gi:8923319 /UG=Hs.252692 hypothetical protein FLJ20343 /FL=gb:NM_017775.1 NM_017775 tetratricopeptide repeat domain 19 TTC19 54902 NM_001271420 /// NM_017775 0000910 // cytokinesis // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0034551 // mitochondrial respiratory chain complex III assembly // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005813 // centrosome // traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // traceable author statement 0005515 // protein binding // inferred from physical interaction 119.78 274.09 3.19 0.01 0.03 -4.50
212431_at 212431_at D83778 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D83778.1 /DEF=Human mRNA for KIAA0194 gene, partial cds. /FEA=mRNA /GEN=KIAA0194 /DB_XREF=gi:1228038 /UG=Hs.216958 KIAA0194 protein D83778 HMG box domain containing 3 HMGXB3 22993 NM_014983 /// XM_006714765 /// XM_006714766 /// XM_006714767 0016310 // phosphorylation // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0016301 // kinase activity // non-traceable author statement 30.90 54.03 3.19 0.01 0.03 -4.50
201434_at 201434_at NM_003314 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003314.1 /DEF=Homo sapiens tetratricopeptide repeat domain 1 (TTC1), mRNA. /FEA=mRNA /GEN=TTC1 /PROD=tetratricopeptide repeat domain 1 /DB_XREF=gi:4507710 /UG=Hs.7733 tetratricopeptide repeat domain 1 /FL=gb:BC000942.1 gb:U46570.1 gb:NM_003314.1 NM_003314 tetratricopeptide repeat domain 1 TTC1 7265 NM_001282500 /// NM_003314 0006457 // protein folding // non-traceable author statement 0005778 // peroxisomal membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // non-traceable author statement 34.88 127.01 3.18 0.01 0.03 -4.50
209310_s_at 209310_s_at U25804 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U25804.1 /DEF=Human Ich-2 cysteine protease mRNA, complete cds. /FEA=mRNA /PROD=Ich-2 /DB_XREF=gi:886049 /UG=Hs.74122 caspase 4, apoptosis-related cysteine protease /FL=gb:U28976.1 gb:U28977.1 gb:U28978.1 gb:NM_001225.1 gb:U25804.1 gb:U28014.1 U25804 caspase 4, apoptosis-related cysteine peptidase CASP4 837 NM_001225 /// NM_033306 /// NM_033307 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // not recorded /// 0097194 // execution phase of apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0072557 // IPAF inflammasome complex // not recorded /// 0072559 // NLRP3 inflammasome complex // not recorded /// 0097169 // AIM2 inflammasome complex // not recorded 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -53.35 97.60 -3.18 0.01 0.03 -4.50
200942_s_at 200942_s_at NM_001537 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001537.1 /DEF=Homo sapiens heat shock factor binding protein 1 (HSBP1), mRNA. /FEA=mRNA /GEN=HSBP1 /PROD=heat shock factor binding protein 1 /DB_XREF=gi:4557646 /UG=Hs.250899 heat shock factor binding protein 1 /FL=gb:AF068754.1 gb:NM_001537.1 NM_001537 heat shock factor binding protein 1 HSBP1 3281 NM_001537 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006936 // muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003714 // transcription corepressor activity // traceable author statement 115.68 420.71 3.18 0.01 0.03 -4.50
209016_s_at 209016_s_at BC002700 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002700.1 /DEF=Homo sapiens, Similar to keratin 7, clone MGC:3625, mRNA, complete cds. /FEA=mRNA /PROD=Similar to keratin 7 /DB_XREF=gi:12803726 /UG=Hs.23881 keratin 7 /FL=gb:BC002700.1 gb:NM_005556.1 BC002700 keratin 7 KRT7 3855 NM_005556 /// XR_245927 0007010 // cytoskeleton organization // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0046417 // chorismate metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005882 // intermediate filament // non-traceable author statement /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 38.80 208.45 3.18 0.01 0.03 -4.50
214440_at 214440_at NM_000662 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_000662.1 /DEF=Homo sapiens N-acetyltransferase 1 (arylamine N-acetyltransferase) (NAT1), mRNA. /FEA=CDS /GEN=NAT1 /PROD=N-acetyltransferase 1 /DB_XREF=gi:4505334 /UG=Hs.155956 N-acetyltransferase 1 (arylamine N-acetyltransferase) /FL=gb:NM_000662.1 NM_000662 N-acetyltransferase 1 (arylamine N-acetyltransferase) NAT1 9 NM_000662 /// NM_001160170 /// NM_001160171 /// NM_001160172 /// NM_001160173 /// NM_001160174 /// NM_001160175 /// NM_001160176 /// NM_001160179 /// NM_001291962 /// XM_006716410 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004060 // arylamine N-acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 28.83 57.76 3.18 0.01 0.03 -4.50
201365_at 201365_at NM_002537 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002537.1 /DEF=Homo sapiens ornithine decarboxylase antizyme 2 (OAZ2), mRNA. /FEA=mRNA /GEN=OAZ2 /PROD=ornithine decarboxylase antizyme 2 /DB_XREF=gi:9845506 /UG=Hs.74563 ornithine decarboxylase antizyme 2 /FL=gb:AF057297.1 gb:AF242521.1 gb:NM_002537.1 NM_002537 ornithine decarboxylase antizyme 2 OAZ2 4947 NM_002537 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006595 // polyamine metabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008073 // ornithine decarboxylase inhibitor activity // inferred from electronic annotation 44.83 186.31 3.18 0.01 0.03 -4.50
214427_at 214427_at NM_006170 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_006170.1 /DEF=Homo sapiens nucleolar protein 1 (120kD) (NOL1), mRNA. /FEA=CDS /GEN=NOL1 /PROD=nucleolar protein 1 (120kD) /DB_XREF=gi:5453791 /UG=Hs.15243 nucleolar protein 1 (120kD) /FL=gb:BC000656.1 gb:M32110.1 gb:NM_006170.1 NM_006170 NOP2 nucleolar protein NOP2 4839 NM_001033714 /// NM_001258308 /// NM_001258309 /// NM_001258310 /// NM_006170 /// XM_005253691 0006364 // rRNA processing // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0032259 // methylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 36.62 173.24 3.18 0.01 0.03 -4.50
209393_s_at 209393_s_at AF047695 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF047695.1 /DEF=Homo sapiens cap-binding protein 4EHP mRNA, complete cds. /FEA=mRNA /PROD=cap-binding protein 4EHP /DB_XREF=gi:3172338 /UG=Hs.19122 eukaryotic translation initiation factor 4E-like 3 /FL=gb:BC005392.1 gb:AF047695.1 gb:AF068117.1 gb:AF038957.1 gb:NM_004846.1 AF047695 eukaryotic translation initiation factor 4E family member 2 EIF4E2 9470 NM_001276336 /// NM_001276337 /// NM_001282958 /// NM_004846 /// XM_005246975 /// XR_427124 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005845 // mRNA cap binding complex // inferred from direct assay 0000339 // RNA cap binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 50.75 198.40 3.18 0.01 0.03 -4.50
202931_x_at 202931_x_at NM_004305 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004305.1 /DEF=Homo sapiens bridging integrator 1 (BIN1), mRNA. /FEA=mRNA /GEN=BIN1 /PROD=bridging integrator 1 /DB_XREF=gi:4757747 /UG=Hs.193163 bridging integrator 1 /FL=gb:U68485.1 gb:NM_004305.1 NM_004305 bridging integrator 1 BIN1 274 NM_004305 /// NM_139343 /// NM_139344 /// NM_139345 /// NM_139346 /// NM_139347 /// NM_139348 /// NM_139349 /// NM_139350 /// NM_139351 /// XM_005263642 /// XM_005263643 /// XM_005263644 /// XM_005263645 /// XM_005263646 /// XM_005263647 /// XM_005263648 /// XM_006712424 /// XM_006712425 /// XM_006712426 /// XM_006712427 /// XM_006712428 /// XM_006712429 /// XM_006712430 /// XM_006712431 /// XM_006712432 /// XM_006712433 /// XM_006712434 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from mutant phenotype /// 0060988 // lipid tube assembly // inferred from mutant phenotype /// 0071156 // regulation of cell cycle arrest // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030018 // Z disc // inferred from sequence or structural similarity /// 0030315 // T-tubule // inferred from sequence or structural similarity /// 0030424 // axon // inferred from direct assay /// 0031674 // I band // inferred from sequence or structural similarity /// 0033268 // node of Ranvier // inferred from sequence or structural similarity /// 0043194 // axon initial segment // inferred from sequence or structural similarity /// 0043196 // varicosity // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0044300 // cerebellar mossy fiber // inferred from electronic annotation /// 0060987 // lipid tube // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from physical interaction /// 0051020 // GTPase binding // inferred from electronic annotation -40.85 119.50 -3.18 0.01 0.03 -4.50
212195_at 212195_at AL049265 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049265.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564F053 (from clone DKFZp564F053). /FEA=mRNA /DB_XREF=gi:4500013 /UG=Hs.71968 Homo sapiens mRNA; cDNA DKFZp564F053 (from clone DKFZp564F053) AL049265 interleukin 6 signal transducer IL6ST 3572 NM_001190981 /// NM_002184 /// NM_175767 /// NR_120480 /// XM_005248496 0002675 // positive regulation of acute inflammatory response // inferred by curator /// 0002821 // positive regulation of adaptive immune response // inferred by curator /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // traceable author statement /// 0010613 // positive regulation of cardiac muscle hypertrophy // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0034097 // response to cytokine // inferred from direct assay /// 0038154 // interleukin-11-mediated signaling pathway // inferred from electronic annotation /// 0038165 // oncostatin-M-mediated signaling pathway // inferred from mutant phenotype /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from genetic interaction /// 0070102 // interleukin-6-mediated signaling pathway // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from direct assay /// 0070106 // interleukin-27-mediated signaling pathway // inferred from mutant phenotype /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005896 // interleukin-6 receptor complex // inferred from direct assay /// 0005900 // oncostatin-M receptor complex // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from direct assay 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from genetic interaction /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // inferred from genetic interaction /// 0004924 // oncostatin-M receptor activity // inferred from direct assay /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from physical interaction /// 0005138 // interleukin-6 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0019838 // growth factor binding // inferred from physical interaction /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0045509 // interleukin-27 receptor activity // inferred by curator -238.10 1290.58 -3.18 0.01 0.03 -4.50
204526_s_at 204526_s_at NM_007063 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007063.1 /DEF=Homo sapiens vascular Rab-GAPTBC-containing (VRP), mRNA. /FEA=mRNA /GEN=VRP /PROD=vascular Rab-GAPTBC-containing /DB_XREF=gi:5902153 /UG=Hs.164170 vascular Rab-GAPTBC-containing /FL=gb:AB024057.1 gb:NM_007063.1 NM_007063 TBC1 domain family, member 8 (with GRAM domain) TBC1D8 11138 NM_001102426 /// NM_007063 /// XM_005263862 /// XM_005263863 /// XM_005263864 0008015 // blood circulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0016020 // membrane // traceable author statement 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 49.70 191.93 3.18 0.01 0.03 -4.50
217866_at 217866_at NM_024811 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024811.1 /DEF=Homo sapiens hypothetical protein FLJ12529 (FLJ12529), mRNA. /FEA=mRNA /GEN=FLJ12529 /PROD=hypothetical protein FLJ12529 /DB_XREF=gi:13376196 /UG=Hs.169100 hypothetical protein FLJ12529 /FL=gb:NM_024811.1 NM_024811 cleavage and polyadenylation specific factor 7, 59kDa CPSF7 79869 NM_001136040 /// NM_001142565 /// NM_024811 /// XM_005274298 /// XM_005274299 /// XM_005274302 /// XM_005274303 /// XM_006718690 /// XM_006718691 /// XM_006718692 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051262 // protein tetramerization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005849 // mRNA cleavage factor complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 60.05 226.15 3.18 0.01 0.03 -4.50
218270_at 218270_at NM_024540 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024540.1 /DEF=Homo sapiens hypothetical protein FLJ20917 (FLJ20917), mRNA. /FEA=mRNA /GEN=FLJ20917 /PROD=hypothetical protein FLJ20917 /DB_XREF=gi:13375698 /UG=Hs.9265 hypothetical protein FLJ20917 /FL=gb:NM_024540.1 NM_024540 mitochondrial ribosomal protein L24 MRPL24 79590 NM_024540 /// NM_145729 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 100.27 318.81 3.18 0.01 0.03 -4.50
209048_s_at 209048_s_at AB032951 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB032951.1 /DEF=Homo sapiens mRNA for KIAA1125 protein, partial cds. /FEA=mRNA /GEN=KIAA1125 /PROD=KIAA1125 protein /DB_XREF=gi:6329748 /UG=Hs.75871 protein kinase C binding protein 1 /FL=gb:BC001004.1 AB032951 zinc finger, MYND-type containing 8 ZMYND8 23613 NM_001281769 /// NM_001281771 /// NM_001281772 /// NM_001281773 /// NM_001281774 /// NM_001281775 /// NM_001281776 /// NM_001281777 /// NM_001281778 /// NM_001281779 /// NM_001281780 /// NM_001281781 /// NM_001281782 /// NM_001281783 /// NM_001281784 /// NM_012408 /// NM_183047 /// NM_183048 /// XM_005260356 /// XM_005260358 /// XM_005260360 /// XM_005260361 /// XM_005260362 /// XM_005260364 /// XM_005260365 /// XM_005260366 /// XM_005260369 /// XM_005260371 /// XM_005260377 /// XM_006723760 /// XM_006723761 /// XM_006723762 /// XM_006723763 /// XM_006723764 /// XM_006723765 /// XM_006723766 /// XM_006723767 /// XM_006723768 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity 0001106 // RNA polymerase II transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070491 // repressing transcription factor binding // inferred from sequence or structural similarity -65.10 368.05 -3.18 0.01 0.03 -4.50
202291_s_at 202291_s_at NM_000900 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000900.1 /DEF=Homo sapiens matrix Gla protein (MGP), mRNA. /FEA=mRNA /GEN=MGP /PROD=matrix Gla protein /DB_XREF=gi:4505178 /UG=Hs.279009 matrix Gla protein /FL=gb:M58549.1 gb:NM_000900.1 NM_000900 matrix Gla protein MGP 4256 NM_000900 /// NM_001190839 0001502 // cartilage condensation // traceable author statement /// 0001503 // ossification // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030500 // regulation of bone mineralization // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008147 // structural constituent of bone // traceable author statement 60.27 202.84 3.18 0.01 0.03 -4.50
200032_s_at 200032_s_at NM_000661 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000661.1 /DEF=Homo sapiens ribosomal protein L9 (RPL9), mRNA. /FEA=mRNA /GEN=RPL9 /PROD=ribosomal protein L9 /DB_XREF=gi:4506664 /UG=Hs.157850 ribosomal protein L9 /FL=gb:U09953.1 gb:NM_000661.1 NM_000661 ribosomal protein L9 RPL9 6133 NM_000661 /// NM_001024921 /// XM_005262661 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation /// 0047961 // glycine N-acyltransferase activity // inferred from electronic annotation -616.65 3720.55 -3.18 0.01 0.03 -4.50
210283_x_at 210283_x_at BC005295 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005295.1 /DEF=Homo sapiens, Similar to polyadenylate binding protein-interacting protein 1, clone MGC:12360, mRNA, complete cds. /FEA=mRNA /PROD=Similar to polyadenylate bindingprotein-interacting protein 1 /DB_XREF=gi:13529010 /UG=Hs.109643 polyadenylate binding protein-interacting protein 1 /FL=gb:BC005295.1 BC005295 poly(A) binding protein interacting protein 1 PAIP1 10605 NM_006451 /// NM_182789 /// NM_183323 /// XM_005248230 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from direct assay /// 0048255 // mRNA stabilization // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008494 // translation activator activity // inferred from direct assay -59.85 305.88 -3.18 0.01 0.03 -4.50
209898_x_at 209898_x_at U61167 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U61167.1 /DEF=Human SH3 domain-containing protein SH3P18 mRNA, complete cds. /FEA=mRNA /PROD=SH3 domain-containing protein SH3P18 /DB_XREF=gi:1438934 /UG=Hs.330549 Human SH3 domain-containing protein SH3P18 mRNA, complete cds /FL=gb:U61167.1 U61167 intersectin 2 ITSN2 50618 NM_006277 /// NM_019595 /// NM_147152 0006897 // endocytosis // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -43.43 117.91 -3.18 0.01 0.03 -4.50
203690_at 203690_at NM_006322 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006322.1 /DEF=Homo sapiens spindle pole body protein (GCP3), mRNA. /FEA=mRNA /GEN=GCP3 /PROD=spindle pole body protein /DB_XREF=gi:5453659 /UG=Hs.9884 spindle pole body protein /FL=gb:AF042378.1 gb:NM_006322.1 NM_006322 tubulin, gamma complex associated protein 3 TUBGCP3 10426 NM_001286277 /// NM_001286278 /// NM_001286279 /// NM_006322 /// XM_005268293 /// XR_245841 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0007020 // microtubule nucleation // non-traceable author statement /// 0007338 // single fertilization // non-traceable author statement 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // non-traceable author statement /// 0005814 // centriole // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // non-traceable author statement /// 0005827 // polar microtubule // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005198 // structural molecule activity // non-traceable author statement /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043015 // gamma-tubulin binding // inferred from direct assay 48.70 95.83 3.17 0.01 0.03 -4.50
208790_s_at 208790_s_at AF312393 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF312393.1 /DEF=Homo sapiens leucine-zipper protein FKSG13 (FKSG13) mRNA, complete cds. /FEA=mRNA /GEN=FKSG13 /PROD=leucine-zipper protein FKSG13 /DB_XREF=gi:11034808 /UG=Hs.29759 RNA POLYMERASE I AND TRANSCRIPT RELEASE FACTOR /FL=gb:AF312393.1 AF312393 polymerase I and transcript release factor PTRF 284119 NM_012232 /// XM_005257242 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006353 // DNA-templated transcription, termination // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006361 // transcription initiation from RNA polymerase I promoter // inferred from direct assay /// 0006363 // termination of RNA polymerase I transcription // inferred from direct assay /// 0006363 // termination of RNA polymerase I transcription // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0042134 // rRNA primary transcript binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 77.50 204.83 3.17 0.01 0.03 -4.50
217987_at 217987_at NM_019048 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019048.1 /DEF=Homo sapiens hypothetical protein (FLJ20752), mRNA. /FEA=mRNA /GEN=FLJ20752 /PROD=hypothetical protein /DB_XREF=gi:9506696 /UG=Hs.101364 hypothetical protein /FL=gb:BC001243.1 gb:NM_019048.1 NM_019048 asparagine synthetase domain containing 1 ASNSD1 54529 NM_019048 /// XM_005246653 0006529 // asparagine biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation 55.03 205.46 3.17 0.01 0.03 -4.50
200714_x_at 200714_x_at NM_006812 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006812.1 /DEF=Homo sapiens amplified in osteosarcoma (OS-9), mRNA. /FEA=mRNA /GEN=OS-9 /PROD=amplified in osteosarcoma /DB_XREF=gi:5803108 /UG=Hs.76228 amplified in osteosarcoma /FL=gb:U41635.1 gb:AB002806.1 gb:NM_006812.1 NM_006812 osteosarcoma amplified 9, endoplasmic reticulum lectin OS9 10956 NM_001017956 /// NM_001017957 /// NM_001017958 /// NM_001261420 /// NM_001261421 /// NM_001261422 /// NM_001261423 /// NM_006812 /// XM_005268581 /// XM_006719200 /// XM_006719201 0006605 // protein targeting // inferred from electronic annotation /// 0006621 // protein retention in ER lumen // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from mutant phenotype 0000836 // Hrd1p ubiquitin ligase complex // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay 0001948 // glycoprotein binding // inferred from direct assay /// 0002020 // protease binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -157.80 728.62 -3.17 0.01 0.03 -4.50
209077_at 209077_at AL022313 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL022313 /DEF=Human DNA sequence from clone RP5-1119A7 on chromosome 22q12.2-12.3 Contains the TXN2 gene for mitochondrial thioredoxin, a novel gene, the EIF3S7 gene for eukaryotic translation initiation factor 3 subunit 7 (zeta, 6667kD) (EIF3-P66), the gene f... /FEA=mRNA_4 /DB_XREF=gi:4200326 /UG=Hs.211929 thioredoxin, mitochondrial /FL=gb:U78678.1 gb:NM_012473.1 gb:AF276920.1 AL022313 thioredoxin 2 TXN2 25828 NM_012473 /// XM_005261508 /// XM_006724226 0001666 // response to hypoxia // inferred from electronic annotation /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation 39.60 136.65 3.17 0.01 0.03 -4.50
213236_at 213236_at AK025495 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025495.1 /DEF=Homo sapiens cDNA: FLJ21842 fis, clone HEP01849. /FEA=mRNA /DB_XREF=gi:10438030 /UG=Hs.12002 KIAA0790 protein AK025495 SAM and SH3 domain containing 1 SASH1 23328 NM_015278 /// XM_005266874 /// XM_005266875 /// XM_006715406 0000209 // protein polyubiquitination // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0031666 // positive regulation of lipopolysaccharide-mediated signaling pathway // inferred from mutant phenotype /// 0043507 // positive regulation of JUN kinase activity // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 1900044 // regulation of protein K63-linked ubiquitination // inferred from direct assay /// 1900745 // positive regulation of p38MAPK cascade // inferred from mutant phenotype /// 1901224 // positive regulation of NIK/NF-kappaB signaling // inferred from mutant phenotype /// 1902498 // regulation of protein autoubiquitination // inferred from direct assay 0043234 // protein complex // inferred from mutant phenotype 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from direct assay 80.98 342.89 3.17 0.01 0.03 -4.50
201942_s_at 201942_s_at D85390 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D85390.1 /DEF=Homo sapiens mRNA for gp180-carboxypeptidase D-like enzyme, complete cds. /FEA=mRNA /PROD=gp180-carboxypeptidase D-like enzyme /DB_XREF=gi:3641620 /UG=Hs.5057 carboxypeptidase D /FL=gb:U65090.1 gb:D85390.1 gb:NM_001304.2 D85390 carboxypeptidase D CPD 1362 NM_001199775 /// NM_001304 0006508 // proteolysis // inferred from electronic annotation 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -57.35 105.45 -3.17 0.01 0.03 -4.50
202985_s_at 202985_s_at NM_004873 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004873.1 /DEF=Homo sapiens BCL2-associated athanogene 5 (BAG5), mRNA. /FEA=mRNA /GEN=BAG5 /PROD=BCL2-associated athanogene 5 /DB_XREF=gi:6631076 /UG=Hs.5443 BCL2-associated athanogene 5 /FL=gb:AF095195.2 gb:NM_004873.1 NM_004873 BCL2-associated athanogene 5 BAG5 9529 NM_001015048 /// NM_001015049 /// NM_004873 0006457 // protein folding // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0051444 // negative regulation of ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0061084 // negative regulation of protein refolding // inferred from sequence or structural similarity /// 0070997 // neuron death // inferred from sequence or structural similarity /// 0090083 // regulation of inclusion body assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016234 // inclusion body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0031625 // ubiquitin protein ligase binding // inferred from sequence or structural similarity /// 0051087 // chaperone binding // inferred from physical interaction 75.88 247.76 3.17 0.01 0.03 -4.50
219993_at 219993_at NM_022454 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022454.1 /DEF=Homo sapiens hypothetical protein FLJ22252 similar to SRY-box containing gene 17 (FLJ22252), mRNA. /FEA=mRNA /GEN=FLJ22252 /PROD=hypothetical protein FLJ22252 similar to SRY-boxcontaining gene 17 /DB_XREF=gi:11967990 /UG=Hs.97984 hypothetical protein FLJ22252 similar to SRY-box containing gene 17 /FL=gb:NM_022454.1 NM_022454 SRY (sex determining region Y)-box 17 SOX17 64321 NM_022454 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001706 // endoderm formation // inferred from direct assay /// 0001828 // inner cell mass cellular morphogenesis // inferred from electronic annotation /// 0001947 // heart looping // inferred from sequence or structural similarity /// 0003142 // cardiogenic plate morphogenesis // inferred from sequence or structural similarity /// 0003143 // embryonic heart tube morphogenesis // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003308 // negative regulation of Wnt signaling pathway involved in heart development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007493 // endodermal cell fate determination // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0021903 // rostrocaudal neural tube patterning // inferred from electronic annotation /// 0023019 // signal transduction involved in regulation of gene expression // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0031648 // protein destabilization // inferred from mutant phenotype /// 0035050 // embryonic heart tube development // inferred from sequence or structural similarity /// 0042074 // cell migration involved in gastrulation // inferred from electronic annotation /// 0042661 // regulation of mesodermal cell fate specification // inferred from electronic annotation /// 0042662 // negative regulation of mesodermal cell fate specification // inferred from electronic annotation /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from direct assay /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045995 // regulation of embryonic development // inferred from sequence or structural similarity /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // inferred from sequence or structural similarity /// 0048643 // positive regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0048863 // stem cell differentiation // inferred from electronic annotation /// 0048866 // stem cell fate specification // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation /// 0060214 // endocardium formation // inferred from sequence or structural similarity /// 0060807 // regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification // inferred from sequence or structural similarity /// 0060913 // cardiac cell fate determination // inferred from mutant phenotype /// 0060914 // heart formation // traceable author statement /// 0060956 // endocardial cell differentiation // inferred from sequence or structural similarity /// 0061009 // common bile duct development // inferred from electronic annotation /// 0061010 // gall bladder development // inferred from electronic annotation /// 0061031 // endodermal digestive tract morphogenesis // inferred from sequence or structural similarity /// 0072001 // renal system development // inferred from mutant phenotype /// 0072091 // regulation of stem cell proliferation // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 2000035 // regulation of stem cell division // inferred from electronic annotation /// 2000043 // regulation of cardiac cell fate specification // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from sequence or structural similarity -80.45 335.35 -3.17 0.01 0.03 -4.50
201937_s_at 201937_s_at NM_012100 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012100.1 /DEF=Homo sapiens aspartyl aminopeptidase (DNPEP), mRNA. /FEA=mRNA /GEN=DNPEP /PROD=aspartyl aminopeptidase /DB_XREF=gi:6912247 /UG=Hs.258551 aspartyl aminopeptidase /FL=gb:BC000653.1 gb:AF005050.2 gb:NM_012100.1 NM_012100 aspartyl aminopeptidase DNPEP 23549 NM_012100 /// XM_005246430 /// XM_005246431 /// XM_005246432 0006508 // proteolysis // inferred from electronic annotation /// 0006518 // peptide metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0072562 // blood microparticle // inferred from direct assay 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -36.23 70.24 -3.17 0.01 0.03 -4.50
204980_at 204980_at NM_004898 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004898.1 /DEF=Homo sapiens clock (mouse) homolog (CLOCK), mRNA. /FEA=mRNA /GEN=CLOCK /PROD=clock (mouse) homolog /DB_XREF=gi:4758009 /UG=Hs.50722 clock (mouse) homolog /FL=gb:AB002332.1 gb:AF011568.1 gb:NM_004898.1 NM_004898 clock circadian regulator CLOCK 9575 NM_001267843 /// NM_004898 /// XM_005265787 /// XM_006714054 0000077 // DNA damage checkpoint // inferred from mutant phenotype /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // traceable author statement /// 0009648 // photoperiodism // traceable author statement /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from mutant phenotype /// 0032922 // circadian regulation of gene expression // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from mutant phenotype /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042634 // regulation of hair cycle // inferred from mutant phenotype /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0051775 // response to redox state // inferred from direct assay /// 0071479 // cellular response to ionizing radiation // inferred from direct assay /// 2000074 // regulation of type B pancreatic cell development // inferred from sequence or structural similarity /// 2000323 // negative regulation of glucocorticoid receptor signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from physical interaction /// 0005694 // chromosome // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0033391 // chromatoid body // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000982 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0004402 // histone acetyltransferase activity // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0031490 // chromatin DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from direct assay 46.52 134.74 3.17 0.01 0.03 -4.50
203934_at 203934_at NM_002253 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002253.1 /DEF=Homo sapiens kinase insert domain receptor (a type III receptor tyrosine kinase) (KDR), mRNA. /FEA=mRNA /GEN=KDR /PROD=kinase insert domain receptor (a type IIIreceptor tyrosine kinase) /DB_XREF=gi:11321596 /UG=Hs.12337 kinase insert domain receptor (a type III receptor tyrosine kinase) /FL=gb:NM_002253.1 gb:AF035121.1 gb:AF063658.1 NM_002253 kinase insert domain receptor (a type III receptor tyrosine kinase) KDR 3791 NM_002253 0001525 // angiogenesis // traceable author statement /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from sequence or structural similarity /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0003158 // endothelium development // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // traceable author statement /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0035162 // embryonic hemopoiesis // inferred from sequence or structural similarity /// 0035584 // calcium-mediated signaling using intracellular calcium source // inferred from mutant phenotype /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from direct assay /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from mutant phenotype /// 0038083 // peptidyl-tyrosine autophosphorylation // inferred from sequence or structural similarity /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from direct assay /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043129 // surfactant homeostasis // inferred from electronic annotation /// 0043410 // positive regulation of MAPK cascade // inferred from direct assay /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045446 // endothelial cell differentiation // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // inferred from direct assay /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // inferred from mutant phenotype /// 0051894 // positive regulation of focal adhesion assembly // inferred from direct assay /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay /// 2001214 // positive regulation of vasculogenesis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0071944 // cell periphery // inferred from electronic annotation /// 0097443 // sorting endosome // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004716 // receptor signaling protein tyrosine kinase activity // traceable author statement /// 0005021 // vascular endothelial growth factor-activated receptor activity // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from physical interaction /// 0038085 // vascular endothelial growth factor binding // inferred from physical interaction /// 0051879 // Hsp90 protein binding // traceable author statement -131.45 495.20 -3.17 0.01 0.03 -4.50
218188_s_at 218188_s_at NM_012458 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012458.1 /DEF=Homo sapiens translocase of inner mitochondrial membrane 13 (yeast) homolog B (TIMM13B), mRNA. /FEA=mRNA /GEN=TIMM13B /PROD=translocase of inner mitochondrial membrane 13(yeast) homolog B /DB_XREF=gi:11024699 /UG=Hs.23410 translocase of inner mitochondrial membrane 13 (yeast) homolog B /FL=gb:NM_012458.1 gb:AF144700.1 gb:AF152352.1 NM_012458 translocase of inner mitochondrial membrane 13 homolog (yeast) TIMM13 26517 NM_012458 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0072321 // chaperone-mediated protein transport // traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // traceable author statement 0008270 // zinc ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 79.67 228.69 3.16 0.01 0.03 -4.50
200674_s_at 200674_s_at NM_000994 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000994.1 /DEF=Homo sapiens ribosomal protein L32 (RPL32), mRNA. /FEA=mRNA /GEN=RPL32 /PROD=ribosomal protein L32 /DB_XREF=gi:4506634 /UG=Hs.169793 ribosomal protein L32 /FL=gb:NM_000994.1 NM_000994 ribosomal protein L32 RPL32 6161 NM_000994 /// NM_001007073 /// NM_001007074 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -845.53 3625.59 -3.16 0.01 0.03 -4.50
201541_s_at 201541_s_at NM_006349 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006349.1 /DEF=Homo sapiens putative cyclin G1 interacting protein (CG1I), mRNA. /FEA=mRNA /GEN=CG1I /PROD=putative cyclin G1 interacting protein /DB_XREF=gi:5453616 /UG=Hs.10028 putative cyclin G1 interacting protein /FL=gb:U61837.1 gb:NM_006349.1 NM_006349 zinc finger, HIT-type containing 1 ZNHIT1 10467 NM_006349 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0031063 // regulation of histone deacetylation // inferred from electronic annotation /// 0042129 // regulation of T cell proliferation // inferred from electronic annotation /// 0070317 // negative regulation of G0 to G1 transition // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 60.60 165.65 3.16 0.01 0.03 -4.50
208694_at 208694_at U47077 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U47077.5 /DEF=Homo sapiens DNA-dependent protein kinase catalytic subunit (DNA-PKcs) mRNA, complete cds. /FEA=mRNA /GEN=DNA-PKcs /PROD=DNA-dependent protein kinase catalytic subunit /DB_XREF=gi:13570016 /UG=Hs.155637 protein kinase, DNA-activated, catalytic polypeptide /FL=gb:U47077.5 gb:NM_006904.5 U47077 protein kinase, DNA-activated, catalytic polypeptide PRKDC 5591 NM_001081640 /// NM_006904 0000723 // telomere maintenance // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0002326 // B cell lineage commitment // inferred from electronic annotation /// 0002328 // pro-B cell differentiation // inferred from electronic annotation /// 0002360 // T cell lineage commitment // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006303 // double-strand break repair via nonhomologous end joining // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030098 // lymphocyte differentiation // inferred from electronic annotation /// 0031648 // protein destabilization // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033152 // immunoglobulin V(D)J recombination // inferred from electronic annotation /// 0033153 // T cell receptor V(D)J recombination // inferred from electronic annotation /// 0035234 // ectopic germ cell programmed cell death // inferred from electronic annotation /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048511 // rhythmic process // inferred from electronic annotation /// 0072431 // signal transduction involved in mitotic G1 DNA damage checkpoint // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005958 // DNA-dependent protein kinase-DNA ligase 4 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070419 // nonhomologous end joining complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004677 // DNA-dependent protein kinase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 49.27 189.39 3.16 0.01 0.03 -4.50
203885_at 203885_at NM_014999 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014999.1 /DEF=Homo sapiens KIAA0118 protein (KIAA0118), mRNA. /FEA=mRNA /GEN=KIAA0118 /PROD=KIAA0118 protein /DB_XREF=gi:7661921 /UG=Hs.184627 KIAA0118 protein /FL=gb:AF091035.1 gb:NM_014999.1 NM_014999 RAB21, member RAS oncogene family RAB21 23011 NM_014999 0006184 // GTP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay -39.35 152.15 -3.15 0.02 0.03 -4.50
201203_s_at 201203_s_at AI921320 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI921320 /FEA=EST /DB_XREF=gi:5657284 /DB_XREF=est:wo23c10.x1 /CLONE=IMAGE:2456178 /UG=Hs.98614 ribosome binding protein 1 (dog 180kD homolog) /FL=gb:AF006751.1 gb:NM_004587.1 AI921320 ribosome binding protein 1 RRBP1 6238 NM_001042576 /// NM_004587 0001649 // osteoblast differentiation // inferred from direct assay /// 0006412 // translation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005840 // ribosome // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 37.95 74.67 3.15 0.02 0.03 -4.50
200077_s_at 200077_s_at D87914 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D87914.1 /DEF=Human mRNA for ornithine decarboxylase antizyme, complete cds. /FEA=mRNA /GEN=hAZ-brain /PROD=ornithine decarboxylase antizyme /DB_XREF=gi:1590807 /FL=gb:D87914.1 D87914 ornithine decarboxylase antizyme 1 OAZ1 4946 NM_004152 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0045732 // positive regulation of protein catabolic process // inferred from sequence or structural similarity 0005829 // cytosol // traceable author statement 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008073 // ornithine decarboxylase inhibitor activity // inferred from electronic annotation -200.43 2071.79 -3.15 0.02 0.03 -4.50
213049_at 213049_at BG436400 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG436400 /FEA=EST /DB_XREF=gi:13342906 /DB_XREF=est:602509062F1 /CLONE=IMAGE:4619679 /UG=Hs.167031 DKFZP566D133 protein BG436400 Ral GTPase activating protein, alpha subunit 1 (catalytic) RALGAPA1 253959 NM_001283043 /// NM_001283044 /// NM_014990 /// NM_194301 /// XM_005267491 /// XM_005267492 /// XM_005267493 /// XM_005267498 /// XM_006720098 /// XM_006720099 /// XM_006720100 /// XM_006720101 /// XM_006720102 /// XM_006720103 /// XM_006720104 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0032859 // activation of Ral GTPase activity // not recorded /// 0032859 // activation of Ral GTPase activity // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // /// 0005488 // binding // inferred from electronic annotation /// 0017123 // Ral GTPase activator activity // not recorded /// 0017123 // Ral GTPase activator activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from physical interaction 34.25 55.67 3.15 0.02 0.03 -4.50
211073_x_at 211073_x_at BC006483 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006483.1 /DEF=Homo sapiens, ribosomal protein L3, clone MGC:4393, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L3 /DB_XREF=gi:13623708 /FL=gb:BC006483.1 BC006483 RNA, U86 small nucleolar /// ribosomal protein L3 /// small nucleolar RNA, C/D box 83B RNU86 /// RPL3 /// SNORD83B 6122 /// 116936 /// 116938 NM_000967 /// NM_001033853 /// NR_000026 /// NR_000028 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -1025.63 3826.39 -3.15 0.02 0.03 -4.50
212638_s_at 212638_s_at BF131791 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF131791 /FEA=EST /DB_XREF=gi:10970831 /DB_XREF=est:601820701F1 /CLONE=IMAGE:4052256 /UG=Hs.324275 Homo sapiens mRNA; cDNA DKFZp434D2111 (from clone DKFZp434D2111) BF131791 WW domain containing E3 ubiquitin protein ligase 1 WWP1 11059 NM_007013 /// XM_005250760 /// XM_005250761 0007165 // signal transduction // non-traceable author statement /// 0007417 // central nervous system development // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0046718 // viral entry into host cell // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0000151 // ubiquitin ligase complex // non-traceable author statement /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // not recorded /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation 93.37 260.04 3.15 0.02 0.03 -4.50
208943_s_at 208943_s_at U93239 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U93239.1 /DEF=Human Sec62 (Sec62) mRNA, complete cds. /FEA=mRNA /GEN=Sec62 /PROD=Sec62 /DB_XREF=gi:1928972 /UG=Hs.8146 translocation protein 1 /FL=gb:D87127.1 gb:U93239.1 gb:NM_003262.1 U93239 SEC62 homolog (S. cerevisiae) SEC62 7095 NM_003262 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006620 // posttranslational protein targeting to membrane // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016235 // aggresome // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0004872 // receptor activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 55.55 266.50 3.15 0.02 0.03 -4.50
212209_at 212209_at AL133033 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL133033.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586E041 (from clone DKFZp586E041); partial cds. /FEA=mRNA /GEN=DKFZp586E041 /PROD=hypothetical protein /DB_XREF=gi:6453435 /UG=Hs.4084 KIAA1025 protein AL133033 mediator complex subunit 13-like MED13L 23389 NM_015335 /// XM_006719305 /// XM_006719306 /// XM_006719307 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation 0001104 // RNA polymerase II transcription cofactor activity // inferred from electronic annotation -36.60 132.05 -3.15 0.02 0.03 -4.50
204538_x_at 204538_x_at NM_006985 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006985.1 /DEF=Homo sapiens nuclear pore complex interacting protein (NPIP), mRNA. /FEA=mRNA /GEN=NPIP /PROD=nuclear pore complex interacting protein /DB_XREF=gi:5902013 /UG=Hs.251928 nuclear pore complex interacting protein /FL=gb:AF132984.1 gb:NM_006985.1 NM_006985 nuclear pore complex interacting protein family, member A1 NPIPA1 9284 NM_006985 /// XM_005255694 /// XM_005255695 /// XM_006720979 /// XM_006720980 0006810 // transport // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation -132.90 315.00 -3.15 0.02 0.03 -4.50
202772_at 202772_at NM_000191 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000191.1 /DEF=Homo sapiens 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria) (HMGCL), mRNA. /FEA=mRNA /GEN=HMGCL /PROD=3-hydroxymethyl-3-methylglutaryl-Coenzyme Alyase (hydroxymethylglutaricaciduria) /DB_XREF=gi:4504426 /UG=Hs.831 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria) /FL=gb:L07033.1 gb:NM_000191.1 NM_000191 3-hydroxymethyl-3-methylglutaryl-CoA lyase HMGCL 3155 NM_000191 /// NM_001166059 0001889 // liver development // inferred from electronic annotation /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // inferred from electronic annotation /// 0006552 // leucine catabolic process // non-traceable author statement /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0042594 // response to starvation // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046950 // cellular ketone body metabolic process // traceable author statement /// 0046951 // ketone body biosynthetic process // inferred from direct assay /// 0046951 // ketone body biosynthetic process // traceable author statement /// 0051262 // protein tetramerization // inferred from direct assay /// 0070542 // response to fatty acid // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // non-traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0005777 // peroxisome // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0004419 // hydroxymethylglutaryl-CoA lyase activity // inferred from direct assay /// 0004419 // hydroxymethylglutaryl-CoA lyase activity // traceable author statement /// 0005102 // receptor binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0031406 // carboxylic acid binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from direct assay -44.90 172.93 -3.14 0.02 0.03 -4.50
200883_at 200883_at NM_003366 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003366.1 /DEF=Homo sapiens ubiquinol-cytochrome c reductase core protein II (UQCRC2), mRNA. /FEA=mRNA /GEN=UQCRC2 /PROD=ubiquinol-cytochrome c reductase core proteinII /DB_XREF=gi:4507842 /UG=Hs.173554 ubiquinol-cytochrome c reductase core protein II /FL=gb:BC000484.1 gb:BC003136.1 gb:J04973.1 gb:NM_003366.1 NM_003366 ubiquinol-cytochrome c reductase core protein II UQCRC2 7385 NM_003366 0006119 // oxidative phosphorylation // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0009060 // aerobic respiration // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005750 // mitochondrial respiratory chain complex III // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 106.05 286.88 3.14 0.02 0.03 -4.50
219773_at 219773_at NM_016931 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016931.1 /DEF=Homo sapiens NADPH oxidase 4 (NOX4), mRNA. /FEA=mRNA /GEN=NOX4 /PROD=NADPH oxidase 4 /DB_XREF=gi:8393842 /UG=Hs.93847 NADPH oxidase 4 /FL=gb:AF254621.1 gb:AB041035.1 gb:NM_016931.1 gb:AF261943.1 NM_016931 NADPH oxidase 4 NOX4 50507 NM_001143836 /// NM_001143837 /// NM_001291926 /// NM_001291927 /// NM_001291929 /// NM_016931 /// NR_026571 /// NR_120406 /// XM_006718847 /// XM_006718848 /// XM_006718849 /// XM_006718850 /// XM_006718851 /// XM_006718852 /// XM_006718853 /// XR_428978 /// XR_428979 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0014911 // positive regulation of smooth muscle cell migration // inferred from electronic annotation /// 0035051 // cardiocyte differentiation // inferred from electronic annotation /// 0042554 // superoxide anion generation // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0045453 // bone resorption // inferred from electronic annotation /// 0050667 // homocysteine metabolic process // inferred from direct assay /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071320 // cellular response to cAMP // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071480 // cellular response to gamma radiation // inferred from electronic annotation /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0072593 // reactive oxygen species metabolic process // inferred from direct assay /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from electronic annotation /// 2000573 // positive regulation of DNA biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043020 // NADPH oxidase complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0071944 // cell periphery // inferred from electronic annotation 0000166 // nucleotide binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016174 // NAD(P)H oxidase activity // traceable author statement /// 0016175 // superoxide-generating NADPH oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019826 // oxygen sensor activity // traceable author statement /// 0020037 // heme binding // traceable author statement /// 0050660 // flavin adenine dinucleotide binding // traceable author statement /// 0050664 // oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor // inferred from electronic annotation /// 0072341 // modified amino acid binding // inferred from direct assay 40.45 194.38 3.14 0.02 0.03 -4.50
221264_s_at 221264_s_at NM_031214 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031214.1 /DEF=Homo sapiens hypothetical protein (AF311304), mRNA. /FEA=mRNA /GEN=AF311304 /PROD=hypothetical protein /DB_XREF=gi:13654285 /FL=gb:NM_031214.1 NM_031214 TAR DNA binding protein TARDBP 23435 NM_007375 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from direct assay /// 0043922 // negative regulation by host of viral transcription // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 29.02 39.84 3.14 0.02 0.03 -4.50
217965_s_at 217965_s_at NM_013260 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013260.1 /DEF=Homo sapiens transcriptional regulator protein (HCNGP), mRNA. /FEA=mRNA /GEN=HCNGP /PROD=transcriptional regulator protein /DB_XREF=gi:9994178 /UG=Hs.27299 transcriptional regulator protein /FL=gb:AF119664.1 gb:NM_013260.1 NM_013260 SAP30 binding protein SAP30BP 29115 NM_013260 /// XM_005257256 /// XM_006721849 /// XR_243648 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -38.88 137.84 -3.14 0.02 0.03 -4.50
221875_x_at 221875_x_at AW514210 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW514210 /FEA=EST /DB_XREF=gi:7152378 /DB_XREF=est:hd75b05.x1 /CLONE=IMAGE:2915313 /UG=Hs.110309 major histocompatibility complex, class I, F AW514210 major histocompatibility complex, class I, F HLA-F 3134 NM_001098478 /// NM_001098479 /// NM_018950 /// XM_005249054 /// XM_005272809 /// XM_005274960 /// XM_005275115 /// XM_005275390 /// XM_005275547 /// XM_005275548 /// XM_006726089 /// XM_006726090 /// XM_006726091 /// XM_006726092 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0046978 // TAP1 binding // inferred from physical interaction /// 0046979 // TAP2 binding // inferred from physical interaction -122.83 296.24 -3.14 0.02 0.03 -4.50
46256_at 46256_at AA522670 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA522670:ni39a05.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-979184 /clone_end=3' /gb=AA522670 /gi=2263382 /ug=Hs.7247 /len=684 AA522670 splA/ryanodine receptor domain and SOCS box containing 3 SPSB3 90864 NM_080861 /// XM_005255673 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -115.18 357.29 -3.13 0.02 0.03 -4.50
212712_at 212712_at BE222901 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE222901 /FEA=EST /DB_XREF=gi:8910219 /DB_XREF=est:hu44c03.x1 /CLONE=IMAGE:3172900 /UG=Hs.184793 Homo sapiens cDNA: FLJ21880 fis, clone HEP02743 BE222901 calmodulin regulated spectrin-associated protein 1 CAMSAP1 157922 NM_015447 /// XM_005263396 /// XM_005263397 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from genetic interaction /// 0031175 // neuron projection development // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0008017 // microtubule binding // inferred from direct assay /// 0030507 // spectrin binding // inferred from direct assay -41.22 98.26 -3.13 0.02 0.03 -4.50
213787_s_at 213787_s_at AV702405 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV702405 /FEA=EST /DB_XREF=gi:10718735 /DB_XREF=est:AV702405 /CLONE=ADBBFA03 /UG=Hs.75105 emopamil-binding protein (sterol isomerase) AV702405 emopamil binding protein (sterol isomerase) EBP 10682 NM_006579 0001501 // skeletal system development // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006855 // drug transmembrane transport // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // traceable author statement /// 0016125 // sterol metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000247 // C-8 sterol isomerase activity // inferred from electronic annotation /// 0004769 // steroid delta-isomerase activity // traceable author statement /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0015238 // drug transmembrane transporter activity // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0047750 // cholestenol delta-isomerase activity // inferred from electronic annotation 65.35 134.70 3.13 0.02 0.03 -4.50
201192_s_at 201192_s_at NM_006224 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006224.1 /DEF=Homo sapiens phosphotidylinositol transfer protein (PITPN), mRNA. /FEA=mRNA /GEN=PITPN /PROD=phosphotidylinositol transfer protein /DB_XREF=gi:5453907 /UG=Hs.79709 phosphotidylinositol transfer protein /FL=gb:D30036.1 gb:M73704.1 gb:NM_006224.1 NM_006224 phosphatidylinositol transfer protein, alpha PITPNA 5306 NM_006224 0006629 // lipid metabolic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007601 // visual perception // traceable author statement /// 0015914 // phospholipid transport // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008525 // phosphatidylcholine transporter activity // traceable author statement /// 0008526 // phosphatidylinositol transporter activity // traceable author statement /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0070540 // stearic acid binding // inferred from electronic annotation -47.00 251.03 -3.13 0.02 0.03 -4.50
201528_at 201528_at BG398414 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG398414 /FEA=EST /DB_XREF=gi:13291862 /DB_XREF=est:602439888F1 /CLONE=IMAGE:4566380 /UG=Hs.84318 replication protein A1 (70kD) /FL=gb:M63488.1 gb:NM_002945.1 BG398414 replication protein A1, 70kDa RPA1 6117 NM_002945 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0000722 // telomere maintenance via recombination // traceable author statement /// 0000723 // telomere maintenance // inferred from mutant phenotype /// 0000723 // telomere maintenance // traceable author statement /// 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0000724 // double-strand break repair via homologous recombination // traceable author statement /// 0000730 // DNA recombinase assembly // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006260 // DNA replication // inferred from mutant phenotype /// 0006260 // DNA replication // traceable author statement /// 0006261 // DNA-dependent DNA replication // traceable author statement /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006284 // base-excision repair // inferred from direct assay /// 0006289 // nucleotide-excision repair // inferred from mutant phenotype /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006297 // nucleotide-excision repair, DNA gap filling // traceable author statement /// 0006298 // mismatch repair // inferred from mutant phenotype /// 0006302 // double-strand break repair // traceable author statement /// 0006310 // DNA recombination // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0032201 // telomere maintenance via semi-conservative replication // traceable author statement /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation 0000793 // condensed chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000800 // lateral element // inferred from electronic annotation /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005662 // DNA replication factor A complex // inferred from direct assay /// 0005662 // DNA replication factor A complex // inferred from physical interaction /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 67.78 188.19 3.13 0.02 0.03 -4.50
212681_at 212681_at AI770004 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI770004 /FEA=EST /DB_XREF=gi:5236513 /DB_XREF=est:wh66d06.x1 /CLONE=IMAGE:2385707 /UG=Hs.103839 erythrocyte membrane protein band 4.1-like 3 AI770004 erythrocyte membrane protein band 4.1-like 3 EPB41L3 23136 NM_001281533 /// NM_001281534 /// NM_001281535 /// NM_012307 /// XM_005258085 /// XM_005258086 /// XM_005258087 /// XM_005258088 /// XM_005258089 /// XM_005258090 /// XM_005258091 /// XM_006722301 /// XM_006722302 /// XM_006722303 /// XM_006722304 /// XM_006722305 /// XM_006722306 /// XM_006722307 /// XM_006722308 /// XM_006722309 /// XM_006722310 /// XM_006722311 /// XM_006722312 /// XM_006722313 /// XM_006722314 /// XM_006722315 /// XM_006722316 0002175 // protein localization to paranode region of axon // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007016 // cytoskeletal anchoring at plasma membrane // traceable author statement /// 0008360 // regulation of cell shape // inferred from sequence or structural similarity /// 0030865 // cortical cytoskeleton organization // traceable author statement /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030913 // paranodal junction assembly // inferred from sequence or structural similarity /// 0043217 // myelin maintenance // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0071205 // protein localization to juxtaparanode region of axon // inferred from sequence or structural similarity /// 0072659 // protein localization to plasma membrane // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030673 // axolemma // inferred from sequence or structural similarity /// 0033270 // paranode region of axon // inferred from sequence or structural similarity /// 0044224 // juxtaparanode region of axon // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation -93.65 199.05 -3.13 0.02 0.03 -4.50
219444_at 219444_at NM_021946 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021946.1 /DEF=Homo sapiens hypothetical protein FLJ11362 (FLJ11362), mRNA. /FEA=mRNA /GEN=FLJ11362 /PROD=hypothetical protein FLJ11362 /DB_XREF=gi:11345489 /UG=Hs.8929 hypothetical protein FLJ11362 /FL=gb:NM_021946.1 NM_021946 BCL6 corepressor-like 1 BCORL1 63035 NM_001184772 /// NM_021946 /// XM_005262452 /// XM_005262453 /// XM_005262454 /// XM_005262455 /// XM_005262456 /// XM_006724776 /// XM_006724777 /// XM_006724778 /// XM_006724779 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 42.28 73.66 3.13 0.02 0.03 -4.50
203336_s_at 203336_s_at AL548363 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL548363 /FEA=EST /DB_XREF=gi:12883296 /DB_XREF=est:AL548363 /CLONE=CS0DI016YO13 (5 prime) /UG=Hs.173274 integrin cytoplasmic domain-associated protein 1 /FL=gb:AF012023.1 gb:NM_004763.1 AL548363 integrin beta 1 binding protein 1 ITGB1BP1 9270 NM_004763 /// NM_022334 /// XM_005246183 /// XM_005246184 /// XM_005246185 /// XM_005246186 /// XM_005246187 /// XM_005246188 /// XM_005246189 /// XM_006711903 0001525 // angiogenesis // inferred from electronic annotation /// 0002043 // blood vessel endothelial cell proliferation involved in sprouting angiogenesis // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006933 // negative regulation of cell adhesion involved in substrate-bound cell migration // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010764 // negative regulation of fibroblast migration // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from direct assay /// 0016477 // cell migration // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032148 // activation of protein kinase B activity // inferred from direct assay /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0033622 // integrin activation // inferred from sequence or structural similarity /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from sequence or structural similarity /// 0035148 // tube formation // inferred from direct assay /// 0035556 // intracellular signal transduction // traceable author statement /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0043088 // regulation of Cdc42 GTPase activity // inferred from direct assay /// 0043113 // receptor clustering // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from direct assay /// 0045747 // positive regulation of Notch signaling pathway // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050880 // regulation of blood vessel size // inferred from direct assay /// 0051451 // myoblast migration // inferred from sequence or structural similarity /// 0051496 // positive regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0090051 // negative regulation of cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0090314 // positive regulation of protein targeting to membrane // inferred from sequence or structural similarity /// 0090315 // negative regulation of protein targeting to membrane // inferred from direct assay /// 1900025 // negative regulation of substrate adhesion-dependent cell spreading // inferred from direct assay /// 2001044 // regulation of integrin-mediated signaling pathway // inferred from sequence or structural similarity 0001726 // ruffle // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0030027 // lamellipodium // inferred from direct assay /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from direct assay 0005092 // GDP-dissociation inhibitor activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // traceable author statement /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from direct assay /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 40.10 201.00 3.13 0.02 0.03 -4.50
208626_s_at 208626_s_at BC001913 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001913.1 /DEF=Homo sapiens, Similar to membrane protein of cholinergic synaptic vesicles, clone MGC:2671, mRNA, complete cds. /FEA=mRNA /PROD=Similar to membrane protein of cholinergicsynaptic vesicles /DB_XREF=gi:12804920 /UG=Hs.157236 membrane protein of cholinergic synaptic vesicles /FL=gb:BC001913.1 gb:NM_006373.1 BC001913 vesicle amine transport 1 VAT1 10493 NM_006373 0010637 // negative regulation of mitochondrial fusion // inferred from mutant phenotype /// 0016049 // cell growth // non-traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation -237.80 1024.08 -3.13 0.02 0.03 -4.50
200018_at 200018_at NM_001017 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001017.1 /DEF=Homo sapiens ribosomal protein S13 (RPS13), mRNA. /FEA=mRNA /GEN=RPS13 /PROD=ribosomal protein S13 /DB_XREF=gi:4506684 /UG=Hs.165590 ribosomal protein S13 /FL=gb:BC000475.1 gb:L01124.1 gb:NM_001017.1 NM_001017 uncharacterized LOC100508408 /// ribosomal protein S13 /// small nucleolar RNA, C/D box 14B LOC100508408 /// RPS13 /// SNORD14B 6207 /// 85388 /// 100508408 NM_001017 /// NR_001452 /// XR_111163 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -593.03 3137.99 -3.13 0.02 0.03 -4.50
208752_x_at 208752_x_at AI888672 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI888672 /FEA=EST /DB_XREF=gi:5593836 /DB_XREF=est:wn34c03.x1 /CLONE=IMAGE:2447332 /UG=Hs.179662 nucleosome assembly protein 1-like 1 /FL=gb:BC002387.1 gb:AL162068.1 AI888672 nucleosome assembly protein 1-like 1 NAP1L1 4673 NM_004537 /// NM_139207 /// XM_005268895 /// XM_005268896 /// XM_006719422 /// XM_006719423 /// XM_006719424 /// XM_006719425 /// XR_245930 /// XR_245931 /// XR_245932 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -144.30 1435.72 -3.13 0.02 0.03 -4.50
203229_s_at 203229_s_at NM_003993 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003993.1 /DEF=Homo sapiens CDC-like kinase 2 (CLK2), transcript variant phclk2, mRNA. /FEA=mRNA /GEN=CLK2 /PROD=CDC-like kinase 2 isoform hclk2 /DB_XREF=gi:4502882 /UG=Hs.73986 CDC-like kinase 2 /FL=gb:NM_003993.1 gb:L29218.1 NM_003993 CDC-like kinase 2 CLK2 1196 NM_001291 /// NM_001294338 /// NM_001294339 /// NM_003993 /// XM_005244876 /// XM_005244878 /// XM_005244879 /// XM_005276742 /// XM_005276744 /// XM_005276745 /// XR_241067 /// XR_254196 0006468 // protein phosphorylation // inferred from direct assay /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0042221 // response to chemical // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from direct assay /// 0045721 // negative regulation of gluconeogenesis // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -77.25 208.93 -3.12 0.02 0.03 -4.50
208805_at 208805_at BC002979 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002979.1 /DEF=Homo sapiens, proteasome (prosome, macropain) subunit, alpha type 6, clone MGC:2333, mRNA, complete cds. /FEA=mRNA /PROD=proteasome (prosome, macropain) subunit, alphatype 6 /DB_XREF=gi:12804240 /UG=Hs.74077 proteasome (prosome, macropain) subunit, alpha type, 6 /FL=gb:BC002979.1 BC002979 KIAA0391 /// proteasome (prosome, macropain) subunit, alpha type, 6 KIAA0391 /// PSMA6 5687 /// 9692 NM_001256678 /// NM_001256679 /// NM_001256680 /// NM_001256681 /// NM_001282232 /// NM_001282233 /// NM_001282234 /// NM_002791 /// NM_014672 /// NR_104110 /// XM_005268237 /// XM_006720334 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0008033 // tRNA processing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050727 // regulation of inflammatory response // inferred by curator /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from mutant phenotype 0000502 // proteasome complex // inferred from electronic annotation /// 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0005839 // proteasome core complex // non-traceable author statement /// 0005844 // polysome // inferred from direct assay /// 0016363 // nuclear matrix // inferred from sequence or structural similarity /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from direct assay /// 0019773 // proteasome core complex, alpha-subunit complex // traceable author statement /// 0030016 // myofibril // inferred from sequence or structural similarity /// 0030017 // sarcomere // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0004175 // endopeptidase activity // non-traceable author statement /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035639 // purine ribonucleoside triphosphate binding // non-traceable author statement /// 0051059 // NF-kappaB binding // inferred from physical interaction -280.70 966.12 -3.12 0.02 0.03 -4.50
221844_x_at 221844_x_at AV756161 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV756161 /FEA=EST /DB_XREF=gi:10914009 /DB_XREF=est:AV756161 /CLONE=BMFBGA04 /UG=Hs.13323 hypothetical protein FLJ22059 AV756161 signal peptidase complex subunit 3 homolog (S. cerevisiae) SPCS3 60559 NM_021928 0006412 // translation // traceable author statement /// 0006465 // signal peptide processing // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005787 // signal peptidase complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 122.20 487.15 3.12 0.02 0.03 -4.50
202135_s_at 202135_s_at NM_005735 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005735.2 /DEF=Homo sapiens ARP1 (actin-related protein 1, yeast) homolog B (centractin beta) (ACTR1B), mRNA. /FEA=mRNA /GEN=ACTR1B /PROD=actin-related protein 1B /DB_XREF=gi:13325060 /UG=Hs.2477 ARP1 (actin-related protein 1, yeast) homolog B (centractin beta) /FL=gb:NM_005735.2 gb:BC004374.1 NM_005735 ARP1 actin-related protein 1 homolog B, centractin beta (yeast) ACTR1B 10120 NM_005735 /// XM_005263854 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005869 // dynactin complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation -27.60 165.15 -3.12 0.02 0.03 -4.50
203879_at 203879_at U86453 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U86453.1 /DEF=Human phosphatidylinositol 3-kinase catalytic subunit p110delta mRNA, complete cds. /FEA=mRNA /PROD=phosphatidylinositol 3-kinase catalytic subunitp110delta /DB_XREF=gi:2317893 /UG=Hs.162808 phosphoinositide-3-kinase, catalytic, delta polypeptide /FL=gb:U86453.1 gb:NM_005026.1 U86453 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta PIK3CD 5293 NM_005026 /// XM_005263473 /// XM_006710686 /// XM_006710687 /// XM_006710688 /// XM_006710689 /// XM_006710690 0001779 // natural killer cell differentiation // traceable author statement /// 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001816 // cytokine production // traceable author statement /// 0002250 // adaptive immune response // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002551 // mast cell chemotaxis // traceable author statement /// 0002679 // respiratory burst involved in defense response // traceable author statement /// 0006468 // protein phosphorylation // non-traceable author statement /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010818 // T cell chemotaxis // traceable author statement /// 0014065 // phosphatidylinositol 3-kinase signaling // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030101 // natural killer cell activation // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // traceable author statement /// 0030593 // neutrophil chemotaxis // traceable author statement /// 0035747 // natural killer cell chemotaxis // traceable author statement /// 0035754 // B cell chemotaxis // traceable author statement /// 0036092 // phosphatidylinositol-3-phosphate biosynthetic process // non-traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042110 // T cell activation // traceable author statement /// 0042113 // B cell activation // traceable author statement /// 0043303 // mast cell degranulation // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050853 // B cell receptor signaling pathway // traceable author statement /// 0060374 // mast cell differentiation // traceable author statement /// 0072672 // neutrophil extravasation // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005942 // phosphatidylinositol 3-kinase complex // non-traceable author statement /// 0042629 // mast cell granule // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035004 // phosphatidylinositol 3-kinase activity // traceable author statement /// 0035005 // 1-phosphatidylinositol-4-phosphate 3-kinase activity // not recorded /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded -39.35 96.17 -3.12 0.02 0.03 -4.50
209068_at 209068_at D89678 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D89678.1 /DEF=Homo sapiens mRNA for A+U-rich element RNA binding factor, complete cds. /FEA=mRNA /PROD=A+U-rich element RNA binding factor /DB_XREF=gi:3218539 /UG=Hs.170311 heterogeneous nuclear ribonucleoprotein D-like /FL=gb:D89092.1 gb:D89678.1 D89678 heterogeneous nuclear ribonucleoprotein D-like HNRNPDL 9987 NM_001207000 /// NM_005463 /// NM_031372 /// NR_003249 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // non-traceable author statement /// 0010468 // regulation of gene expression // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0008143 // poly(A) binding // inferred from direct assay /// 0034046 // poly(G) binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 67.30 87.38 3.12 0.02 0.03 -4.50
202016_at 202016_at NM_002402 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002402.1 /DEF=Homo sapiens mesoderm specific transcript (mouse) homolog (MEST), mRNA. /FEA=mRNA /GEN=MEST /PROD=mesoderm specific transcript (mouse) homolog /DB_XREF=gi:4505154 /UG=Hs.79284 mesoderm specific transcript (mouse) homolog /FL=gb:BC002413.1 gb:D78611.1 gb:D87367.1 gb:NM_002402.1 NM_002402 mesoderm specific transcript MEST 4232 NM_001253900 /// NM_001253901 /// NM_001253902 /// NM_002402 /// NM_177524 /// NM_177525 0007498 // mesoderm development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010883 // regulation of lipid storage // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 68.25 213.12 3.12 0.02 0.03 -4.50
221500_s_at 221500_s_at BE782754 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE782754 /FEA=EST /DB_XREF=gi:10203952 /DB_XREF=est:601471903F1 /CLONE=IMAGE:3874921 /UG=Hs.102178 syntaxin 16 /FL=gb:AF008936.1 BE782754 syntaxin 16 STX16 8675 NM_001001433 /// NM_001001434 /// NM_001134772 /// NM_001134773 /// NM_001204868 /// NM_003763 /// NR_037941 /// NR_037942 /// NR_037943 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay /// 0031201 // SNARE complex // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005484 // SNAP receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 56.87 183.84 3.12 0.02 0.03 -4.50
200639_s_at 200639_s_at NM_003406 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003406.1 /DEF=Homo sapiens tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ), mRNA. /FEA=mRNA /GEN=YWHAZ /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, zeta polypeptide /DB_XREF=gi:4507952 /UG=Hs.75103 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide /FL=gb:BC003623.1 gb:M86400.1 gb:NM_003406.1 gb:U28964.1 NM_003406 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta YWHAZ 7534 NM_001135699 /// NM_001135700 /// NM_001135701 /// NM_001135702 /// NM_003406 /// NM_145690 /// XM_005251060 /// XM_005251061 /// XM_005251062 /// XM_005251063 0002553 // histamine secretion by mast cell // inferred from electronic annotation /// 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010941 // regulation of cell death // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 169.50 740.50 3.12 0.02 0.03 -4.50
221867_at 221867_at BF436315 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF436315 /FEA=EST /DB_XREF=gi:11448630 /DB_XREF=est:7p06b05.x1 /CLONE=IMAGE:3644888 /UG=Hs.296338 ESTs BF436315 NEDD4 binding protein 1 N4BP1 9683 NM_153029 /// XM_005256262 /// XM_006721351 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0034644 // cellular response to UV // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction 31.62 40.46 3.12 0.02 0.03 -4.50
200643_at 200643_at NM_005336 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005336.1 /DEF=Homo sapiens high density lipoprotein binding protein (vigilin) (HDLBP), mRNA. /FEA=mRNA /GEN=HDLBP /PROD=high density lipoprotein binding protein /DB_XREF=gi:4885408 /UG=Hs.177516 high density lipoprotein binding protein (vigilin) /FL=gb:BC001179.1 gb:M64098.1 gb:NM_005336.1 NM_005336 high density lipoprotein binding protein HDLBP 3069 NM_001243900 /// NM_005336 /// NM_203346 /// XM_005247000 /// XM_005247001 /// XM_005247002 /// XM_005247003 /// XM_006712475 /// XM_006712476 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -47.20 240.38 -3.12 0.02 0.03 -4.50
201885_s_at 201885_s_at NM_000398 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000398.3 /DEF=Homo sapiens diaphorase (NADH) (cytochrome b-5 reductase) (DIA1), nuclear gene encoding mitochondrial protein, transcript variant M, mRNA. /FEA=mRNA /GEN=DIA1 /PROD=cytochrome b5 reductase, membrane-bound isoform /DB_XREF=gi:6552326 /UG=Hs.274464 diaphorase (NADH) (cytochrome b-5 reductase) /FL=gb:BC004821.1 gb:NM_000398.3 NM_000398 cytochrome b5 reductase 3 CYB5R3 1727 NM_000398 /// NM_001129819 /// NM_001171660 /// NM_001171661 /// NM_007326 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008015 // blood circulation // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0019852 // L-ascorbic acid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005833 // hemoglobin complex // traceable author statement /// 0016020 // membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004128 // cytochrome-b5 reductase activity, acting on NAD(P)H // traceable author statement /// 0016208 // AMP binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043531 // ADP binding // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation /// 0071949 // FAD binding // inferred from direct assay -124.65 889.75 -3.12 0.02 0.03 -4.50
205290_s_at 205290_s_at NM_001200 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001200.1 /DEF=Homo sapiens bone morphogenetic protein 2 (BMP2), mRNA. /FEA=mRNA /GEN=BMP2 /PROD=bone morphogenetic protein 2 precursor /DB_XREF=gi:4557368 /UG=Hs.73853 bone morphogenetic protein 2 /FL=gb:NM_001200.1 NM_001200 bone morphogenetic protein 2 BMP2 650 NM_001200 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000187 // activation of MAPK activity // inferred from direct assay /// 0001501 // skeletal system development // traceable author statement /// 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0002062 // chondrocyte differentiation // inferred from direct assay /// 0003130 // BMP signaling pathway involved in heart induction // inferred from direct assay /// 0003181 // atrioventricular valve morphogenesis // inferred from sequence or structural similarity /// 0003203 // endocardial cushion morphogenesis // inferred from sequence or structural similarity /// 0003308 // negative regulation of Wnt signaling pathway involved in heart development // inferred from direct assay /// 0006029 // proteoglycan metabolic process // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from sequence or structural similarity /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0009887 // organ morphogenesis // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0010894 // negative regulation of steroid biosynthetic process // inferred from direct assay /// 0010922 // positive regulation of phosphatase activity // inferred from direct assay /// 0021537 // telencephalon development // inferred from direct assay /// 0021978 // telencephalon regionalization // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // traceable author statement /// 0030282 // bone mineralization // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0030501 // positive regulation of bone mineralization // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from expression pattern /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // traceable author statement /// 0031648 // protein destabilization // inferred from electronic annotation /// 0032348 // negative regulation of aldosterone biosynthetic process // inferred from direct assay /// 0033690 // positive regulation of osteoblast proliferation // inferred from sequence or structural similarity /// 0035051 // cardiocyte differentiation // inferred from direct assay /// 0035051 // cardiocyte differentiation // inferred from mutant phenotype /// 0035054 // embryonic heart tube anterior/posterior pattern specification // inferred from sequence or structural similarity /// 0035630 // bone mineralization involved in bone maturation // inferred from direct assay /// 0040007 // growth // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from sequence or structural similarity /// 0042482 // positive regulation of odontogenesis // inferred from sequence or structural similarity /// 0042487 // regulation of odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from direct assay /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from direct assay /// 0045165 // cell fate commitment // inferred from sequence or structural similarity /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045778 // positive regulation of ossification // inferred from direct assay /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048711 // positive regulation of astrocyte differentiation // inferred from sequence or structural similarity /// 0048762 // mesenchymal cell differentiation // inferred from direct assay /// 0048839 // inner ear development // inferred from sequence or structural similarity /// 0051042 // negative regulation of calcium-independent cell-cell adhesion // inferred from direct assay /// 0051216 // cartilage development // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from mutant phenotype /// 0055008 // cardiac muscle tissue morphogenesis // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from sequence or structural similarity /// 0060039 // pericardium development // inferred from sequence or structural similarity /// 0060128 // corticotropin hormone secreting cell differentiation // inferred from sequence or structural similarity /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // inferred from direct assay /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0060395 // SMAD protein signal transduction // inferred from direct assay /// 0060485 // mesenchyme development // inferred from mutant phenotype /// 0060804 // positive regulation of Wnt signaling pathway by BMP signaling pathway // inferred from sequence or structural similarity /// 0061036 // positive regulation of cartilage development // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071773 // cellular response to BMP stimulus // inferred from direct assay /// 0072138 // mesenchymal cell proliferation involved in ureteric bud development // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from expression pattern /// 1900745 // positive regulation of p38MAPK cascade // inferred from direct assay /// 1901522 // positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus // inferred from direct assay /// 2000065 // negative regulation of cortisol biosynthetic process // inferred from direct assay /// 2000726 // negative regulation of cardiac muscle cell differentiation // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay 0004745 // retinol dehydrogenase activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0019211 // phosphatase activator activity // inferred from direct assay /// 0046332 // SMAD binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0070700 // BMP receptor binding // inferred from direct assay -37.22 153.24 -3.11 0.02 0.03 -4.50
216563_at 216563_at X80821 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X80821.1 /DEF=H.sapiens mRNA for ribosomal protein L18a homologue. /FEA=mRNA /PROD=ribosomal protein L18a homologue /DB_XREF=gi:527579 /UG=Hs.302177 H.sapiens mRNA for ribosomal protein L18a homologue X80821 ankyrin repeat domain 12 ANKRD12 23253 NM_001083625 /// NM_001204056 /// NM_015208 /// XM_005258092 /// XM_005258093 /// XM_005258094 /// XM_005258095 /// XM_005258096 /// XM_006722317 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation -57.82 68.56 -3.11 0.02 0.03 -4.50
202547_s_at 202547_s_at AA778936 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA778936 /FEA=EST /DB_XREF=gi:2838267 /DB_XREF=est:zj38h05.s1 /CLONE=IMAGE:452601 /UG=Hs.172813 PAK-interacting exchange factor beta /FL=gb:D63476.1 gb:NM_003899.1 AA778936 Rho guanine nucleotide exchange factor (GEF) 7 ARHGEF7 8874 NM_001113511 /// NM_001113512 /// NM_001113513 /// NM_003899 /// NM_145735 /// XM_005254085 /// XM_005254086 /// XM_005254087 /// XM_005254088 /// XM_005254089 /// XM_005254090 /// XM_005254091 /// XM_005254092 /// XM_005254093 /// XM_005254094 /// XM_005254095 /// XM_006719956 /// XM_006719957 /// XM_006719958 /// XM_006719959 /// XM_006719960 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from sequence or structural similarity /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction -50.92 143.74 -3.11 0.02 0.03 -4.50
200099_s_at 200099_s_at AL356115 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL356115 /DEF=Human DNA sequence from clone RP11-486O22 on chromosome 10 Contains the 3part of a gene for KIAA1128 protein, a novel pseudogene, a gene for protein similar to RPS3A (ribosomal protein S3A), ESTs, STSs, GSSs and CpG islands /FEA=CDS_1 /DB_XREF=gi:9795038 /UG=Hs.307132 Human DNA sequence from clone RP11-486O22 on chromosome 10 Contains the 3part of a gene for KIAA1128 protein, a novel pseudogene, a gene for protein similar to RPS3A (ribosomal protein S3A), ESTs, STSs, GSSs and CpG islands AL356115 ribosomal protein S3A /// small nucleolar RNA, C/D box 73A RPS3A /// SNORD73A 6189 /// 8944 NM_001006 /// NM_001267699 /// NR_000007 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0002181 // cytoplasmic translation // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0097194 // execution phase of apoptosis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -644.40 3288.82 -3.11 0.02 0.03 -4.50
45749_at 45749_at AA400206 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA400206:zu69a02.r1 Homo sapiens cDNA, 5 end /clone=IMAGE-743210 /clone_end=5' /gb=AA400206 /gi=2054077 /ug=Hs.3074 /len=579 AA400206 family with sequence similarity 65, member A FAM65A 79567 NM_001193522 /// NM_001193523 /// NM_001193524 /// NM_024519 /// XM_006721269 /// XM_006721270 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation -60.00 429.40 -3.11 0.02 0.03 -4.50
218120_s_at 218120_s_at D21243 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D21243.1 /DEF=Human mRNA for heme oxygenase-2, complete cds. /FEA=mRNA /PROD=heme oxygenase-2 /DB_XREF=gi:416226 /UG=Hs.284279 heme oxygenase (decycling) 2 /FL=gb:BC002396.1 gb:D21243.1 gb:NM_002134.2 D21243 heme oxygenase (decycling) 2 HMOX2 3163 NM_001127204 /// NM_001127205 /// NM_001127206 /// NM_001286267 /// NM_001286268 /// NM_001286269 /// NM_001286270 /// NM_001286271 /// NM_002134 0001666 // response to hypoxia // inferred from direct assay /// 0006778 // porphyrin-containing compound metabolic process // traceable author statement /// 0006788 // heme oxidation // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0042167 // heme catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004392 // heme oxygenase (decyclizing) activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 52.80 161.72 3.11 0.02 0.03 -4.50
209733_at 209733_at AL034399 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL034399 /DEF=Human DNA sequence from clone 191P20 on chromosome Xq23. Contains a pseudogene similar to AngiotensinVasopressin receptor AIIAVP, and the 3 end of a novel Fibronectin type III domain containing protein similar to Ring finger protein MID1 (Midli... /FEA=mRNA /DB_XREF=gi:4493484 /UG=Hs.12256 midline 2 /FL=gb:AF196481.1 AL034399 midline 2 MID2 11043 NM_012216 /// NM_052817 /// XM_005262062 0016567 // protein ubiquitination // inferred from electronic annotation /// 0032897 // negative regulation of viral transcription // inferred from direct assay /// 0035372 // protein localization to microtubule // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045087 // innate immune response // inferred from direct assay /// 0046597 // negative regulation of viral entry into host cell // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 1902187 // negative regulation of viral release from host cell // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008017 // microtubule binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from physical interaction 43.55 60.53 3.11 0.02 0.03 -4.50
213414_s_at 213414_s_at BE259729 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE259729 /FEA=EST /DB_XREF=gi:9130437 /DB_XREF=est:601145954F1 /CLONE=IMAGE:3161244 /UG=Hs.298262 ribosomal protein S19 BE259729 ribosomal protein S19 RPS19 6223 NM_001022 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000462 // maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from mutant phenotype /// 0002548 // monocyte chemotaxis // inferred from direct assay /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007000 // nucleolus organization // inferred from mutant phenotype /// 0009991 // response to extracellular stimulus // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030218 // erythrocyte differentiation // inferred from mutant phenotype /// 0030490 // maturation of SSU-rRNA // inferred from mutant phenotype /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051262 // protein tetramerization // inferred from direct assay /// 0051272 // positive regulation of cellular component movement // traceable author statement /// 0060265 // positive regulation of respiratory burst involved in inflammatory response // inferred from direct assay /// 0060266 // negative regulation of respiratory burst involved in inflammatory response // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -1043.10 4312.20 -3.10 0.02 0.03 -4.50
212822_at 212822_at AA121502 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA121502 /FEA=EST /DB_XREF=gi:1679116 /DB_XREF=est:zk88a11.s1 /CLONE=IMAGE:489884 /UG=Hs.10491 KIAA1237 protein AA121502 heart development protein with EGF-like domains 1 HEG1 57493 NM_020733 /// XM_005247666 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001885 // endothelial cell development // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0001944 // vasculature development // inferred from electronic annotation /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0003017 // lymph circulation // inferred from electronic annotation /// 0003209 // cardiac atrium morphogenesis // inferred from electronic annotation /// 0003281 // ventricular septum development // inferred from electronic annotation /// 0007043 // cell-cell junction assembly // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0048845 // venous blood vessel morphogenesis // inferred from electronic annotation /// 0050878 // regulation of body fluid levels // inferred from electronic annotation /// 0060039 // pericardium development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 50.02 107.59 3.10 0.02 0.03 -4.50
201828_x_at 201828_x_at NM_003928 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003928.1 /DEF=Homo sapiens CAAX box 1 (CXX1), mRNA. /FEA=mRNA /GEN=CXX1 /PROD=CAAX box 1 /DB_XREF=gi:4503180 /UG=Hs.250708 CAAX box 1 /FL=gb:BC002385.1 gb:BC002410.1 gb:AF038168.1 gb:AF052096.1 gb:NM_003928.1 NM_003928 family with sequence similarity 127, member A FAM127A 8933 NM_001078171 /// NM_003928 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 127.50 520.98 3.10 0.02 0.03 -4.50
218201_at 218201_at NM_004546 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004546.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 (8kD, AGGG) (NDUFB2), mRNA. /FEA=mRNA /GEN=NDUFB2 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 2 (8kD, AGGG) /DB_XREF=gi:4758777 /UG=Hs.198272 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 (8kD, AGGG) /FL=gb:BC001168.1 gb:AF050639.1 gb:NM_004546.1 gb:AF067166.1 NM_004546 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa NDUFB2 4708 NM_004546 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 41.28 208.16 3.10 0.02 0.03 -4.50
204804_at 204804_at NM_003141 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003141.1 /DEF=Homo sapiens Sjogren syndrome antigen A1 (52kD, ribonucleoprotein autoantigen SS-ARo) (SSA1), mRNA. /FEA=mRNA /GEN=SSA1 /PROD=52kD RoSSA autoantigen /DB_XREF=gi:4507226 /UG=Hs.1042 Sjogren syndrome antigen A1 (52kD, ribonucleoprotein autoantigen SS-ARo) /FL=gb:M34551.1 gb:M62800.1 gb:NM_003141.1 NM_003141 tripartite motif containing 21 TRIM21 6737 NM_003141 /// XM_006718283 0000209 // protein polyubiquitination // inferred from direct assay /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031648 // protein destabilization // inferred from mutant phenotype /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032479 // regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032897 // negative regulation of viral transcription // inferred from direct assay /// 0045087 // innate immune response // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0070206 // protein trimerization // inferred from direct assay /// 0090086 // negative regulation of protein deubiquitination // inferred from mutant phenotype /// 1902187 // negative regulation of viral release from host cell // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000932 // cytoplasmic mRNA processing body // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -63.50 118.90 -3.10 0.02 0.03 -4.50
218370_s_at 218370_s_at NM_022753 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022753.1 /DEF=Homo sapiens hypothetical protein FLJ12903 (FLJ12903), mRNA. /FEA=mRNA /GEN=FLJ12903 /PROD=hypothetical protein FLJ12903 /DB_XREF=gi:12232418 /UG=Hs.14928 hypothetical protein FLJ12903 /FL=gb:NM_022753.1 NM_022753 S100P binding protein S100PBP 64766 NM_001017406 /// NM_001256121 /// NM_022753 /// XM_006710818 /// XM_006710819 /// XM_006710820 0005634 // nucleus // inferred from direct assay 0048306 // calcium-dependent protein binding // inferred from physical interaction 29.88 50.71 3.10 0.02 0.03 -4.50
202358_s_at 202358_s_at BG434168 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG434168 /FEA=EST /DB_XREF=gi:13340674 /DB_XREF=est:602506096F1 /CLONE=IMAGE:4603630 /UG=Hs.76906 KIAA0254 gene product /FL=gb:D87443.1 gb:NM_014758.1 BG434168 sorting nexin 19 SNX19 399979 NM_014758 /// XM_005271545 /// XM_005271546 /// XM_005271548 /// XM_005271549 /// XR_428976 /// XR_428977 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation 29.97 47.51 3.10 0.02 0.03 -4.50
214077_x_at 214077_x_at H15129 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:H15129 /FEA=EST /DB_XREF=gi:879949 /DB_XREF=est:ym30b02.s1 /CLONE=IMAGE:49680 /UG=Hs.117313 Meis (mouse) homolog 3 H15129 Meis homeobox 3 pseudogene 1 MEIS3P1 4213 NR_002211 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -45.98 74.34 -3.10 0.02 0.03 -4.50
208660_at 208660_at BC000105 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000105.1 /DEF=Homo sapiens, Similar to CG14740 gene product, clone MGC:2503, mRNA, complete cds. /FEA=mRNA /PROD=Similar to CG14740 gene product /DB_XREF=gi:12652712 /UG=Hs.239760 citrate synthase /FL=gb:BC000105.1 gb:AF047042.1 gb:NM_004077.1 BC000105 citrate synthase CS 1431 NM_004077 /// NM_198324 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004108 // citrate (Si)-synthase activity // inferred from direct assay /// 0004108 // citrate (Si)-synthase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046912 // transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer // inferred from electronic annotation 56.37 571.06 3.10 0.02 0.03 -4.50
201057_s_at 201057_s_at NM_004487 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004487.1 /DEF=Homo sapiens golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1 (GOLGB1), mRNA. /FEA=mRNA /GEN=GOLGB1 /PROD=golgi autoantigen, golgin subfamily b,macrogolgin (with transmembrane signal), 1 /DB_XREF=gi:4758453 /UG=Hs.7844 golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1 /FL=gb:NM_004487.1 NM_004487 golgin B1 GOLGB1 2804 NM_001256486 /// NM_001256487 /// NM_001256488 /// NM_004487 /// XM_005247371 /// XM_005247372 /// XM_005247373 /// XM_006713587 /// XM_006713588 /// XM_006713589 /// XM_006713590 /// XM_006713591 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007030 // Golgi organization // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005795 // Golgi stack // traceable author statement /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -44.27 213.31 -3.09 0.02 0.03 -4.50
217975_at 217975_at NM_016303 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016303.1 /DEF=Homo sapiens pp21 homolog (LOC51186), mRNA. /FEA=mRNA /GEN=LOC51186 /PROD=pp21 homolog /DB_XREF=gi:10047099 /UG=Hs.15984 pp21 homolog /FL=gb:NM_016303.1 gb:AF125535.1 NM_016303 WW domain binding protein 5 WBP5 51186 NM_001006612 /// NM_001006613 /// NM_001006614 /// NM_016303 0050699 // WW domain binding // inferred from electronic annotation -108.48 1010.09 -3.09 0.02 0.03 -4.50
201908_at 201908_at NM_004423 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004423.2 /DEF=Homo sapiens dishevelled 3 (homologous to Drosophila dsh) (DVL3), mRNA. /FEA=mRNA /GEN=DVL3 /PROD=dishevelled 3 /DB_XREF=gi:6806886 /UG=Hs.174044 dishevelled 3 (homologous to Drosophila dsh) /FL=gb:U49262.1 gb:D86963.1 gb:U75651.1 gb:AF006013.1 gb:NM_004423.2 NM_004423 dishevelled segment polarity protein 3 DVL3 1857 NM_004423 /// XM_005247172 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0035567 // non-canonical Wnt signaling pathway // inferred from mutant phenotype /// 0038031 // non-canonical Wnt signaling pathway via JNK cascade // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0060026 // convergent extension // not recorded /// 0060070 // canonical Wnt signaling pathway // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from mutant phenotype /// 0060071 // Wnt signaling pathway, planar cell polarity pathway // inferred from direct assay /// 0090103 // cochlea morphogenesis // not recorded /// 0090179 // planar cell polarity pathway involved in neural tube closure // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // not recorded 0002020 // protease binding // inferred from physical interaction /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005109 // frizzled binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 61.57 146.11 3.09 0.02 0.03 -4.50
202351_at 202351_at AI093579 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI093579 /FEA=EST /DB_XREF=gi:3432555 /DB_XREF=est:qb15g06.x1 /CLONE=IMAGE:1696378 /UG=Hs.295726 integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) /FL=gb:M14648.1 gb:NM_002210.1 AI093579 integrin, alpha V ITGAV 3685 NM_001144999 /// NM_001145000 /// NM_002210 /// XM_005246536 /// XM_006712513 0001525 // angiogenesis // inferred from expression pattern /// 0001568 // blood vessel development // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0007155 // cell adhesion // inferred from direct assay /// 0007160 // cell-matrix adhesion // non-traceable author statement /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009615 // response to virus // inferred from electronic annotation /// 0010745 // negative regulation of macrophage derived foam cell differentiation // inferred from mutant phenotype /// 0010888 // negative regulation of lipid storage // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031589 // cell-substrate adhesion // inferred from mutant phenotype /// 0032369 // negative regulation of lipid transport // inferred from mutant phenotype /// 0033690 // positive regulation of osteoblast proliferation // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043277 // apoptotic cell clearance // inferred from electronic annotation /// 0045715 // negative regulation of low-density lipoprotein particle receptor biosynthetic process // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0046718 // viral entry into host cell // traceable author statement /// 0050748 // negative regulation of lipoprotein metabolic process // inferred from mutant phenotype /// 0050764 // regulation of phagocytosis // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0052066 // entry of symbiont into host cell by promotion of host phagocytosis // non-traceable author statement /// 0070371 // ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070588 // calcium ion transmembrane transport // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from sequence or structural similarity /// 2000425 // regulation of apoptotic cell clearance // inferred from sequence or structural similarity /// 2000536 // negative regulation of entry of bacterium into host cell // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0008305 // integrin complex // inferred from direct assay /// 0008305 // integrin complex // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0035867 // alphav-beta3 integrin-IGF-1-IGF1R complex // inferred from direct assay /// 0045335 // phagocytic vesicle // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0001846 // opsonin binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031994 // insulin-like growth factor I binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // inferred from sequence or structural similarity -178.03 978.26 -3.09 0.02 0.03 -4.50
202272_s_at 202272_s_at NM_015176 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015176.1 /DEF=Homo sapiens KIAA0483 protein (KIAA0483), mRNA. /FEA=mRNA /GEN=KIAA0483 /PROD=KIAA0483 protein /DB_XREF=gi:7662157 /UG=Hs.64691 KIAA0483 protein /FL=gb:NM_015176.1 NM_015176 F-box protein 28 FBXO28 23219 NM_001136115 /// NM_015176 /// NR_049764 0005515 // protein binding // inferred from electronic annotation -77.92 245.14 -3.09 0.02 0.03 -4.50
202578_s_at 202578_s_at NM_018332 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018332.1 /DEF=Homo sapiens hypothetical protein FLJ11126 (FLJ11126), mRNA. /FEA=mRNA /GEN=FLJ11126 /PROD=hypothetical protein FLJ11126 /DB_XREF=gi:8922885 /UG=Hs.226396 hypothetical protein FLJ11126 /FL=gb:BC005162.1 gb:NM_018332.1 NM_018332 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A DDX19A 55308 NM_018332 /// XM_005256030 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 34.10 84.28 3.09 0.02 0.03 -4.50
201492_s_at 201492_s_at NM_021104 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021104.1 /DEF=Homo sapiens ribosomal protein L41 (RPL41), mRNA. /FEA=mRNA /GEN=RPL41 /PROD=ribosomal protein L41 /DB_XREF=gi:10863874 /UG=Hs.324406 ribosomal protein L41 /FL=gb:NM_021104.1 NM_021104 ribosomal protein L41 RPL41 6171 NM_001035267 /// NM_021104 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement -730.15 4406.45 -3.09 0.02 0.03 -4.50
210561_s_at 210561_s_at AL110243 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL110243.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564B0482 (from clone DKFZp564B0482); complete cds. /FEA=mRNA /GEN=DKFZp564B0482 /PROD=hypothetical protein /DB_XREF=gi:5817189 /UG=Hs.187991 DKFZP564A122 protein /FL=gb:AF072880.1 gb:AF106683.1 gb:AL110243.1 gb:AF112205.1 gb:AF069313.2 AL110243 WD repeat and SOCS box containing 1 WSB1 26118 NM_015626 /// NM_134264 /// NM_134265 /// XM_005257963 /// XR_243778 /// XR_429881 0016310 // phosphorylation // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation -153.85 538.00 -3.09 0.02 0.03 -4.50
203737_s_at 203737_s_at NM_015062 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015062.1 /DEF=Homo sapiens KIAA0595 protein (KIAA0595), mRNA. /FEA=mRNA /GEN=KIAA0595 /PROD=KIAA0595 protein /DB_XREF=gi:13124753 /UG=Hs.146957 KIAA0595 protein /FL=gb:BC002561.1 gb:AF325193.1 gb:NM_015062.1 NM_015062 peroxisome proliferator-activated receptor gamma, coactivator-related 1 PPRC1 23082 NM_001288727 /// NM_001288728 /// NM_015062 /// XM_005269656 /// XM_005269658 /// XM_006717730 /// XM_006717731 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 37.18 84.89 3.09 0.02 0.03 -4.50
209061_at 209061_at AI761748 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI761748 /FEA=EST /DB_XREF=gi:5177504 /DB_XREF=est:wg67h01.x1 /CLONE=IMAGE:2370193 /UG=Hs.225977 nuclear receptor coactivator 3 /FL=gb:AF010227.1 gb:AF012108.1 gb:AF016031.1 AI761748 nuclear receptor coactivator 3 NCOA3 8202 NM_001174087 /// NM_001174088 /// NM_006534 /// NM_181659 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0016573 // histone acetylation // inferred from direct assay /// 0016573 // histone acetylation // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035624 // receptor transactivation // traceable author statement /// 0045618 // positive regulation of keratinocyte differentiation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048589 // developmental growth // inferred from electronic annotation /// 0060068 // vagina development // inferred from electronic annotation /// 0060713 // labyrinthine layer morphogenesis // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from direct assay /// 0046966 // thyroid hormone receptor binding // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // non-traceable author statement 35.85 58.20 3.09 0.02 0.03 -4.50
200004_at 200004_at NM_001418 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001418.1 /DEF=Homo sapiens eukaryotic translation initiation factor 4 gamma, 2 (EIF4G2), mRNA. /FEA=mRNA /GEN=EIF4G2 /PROD=eukaryotic translation initiation factor 4gamma, 2 /DB_XREF=gi:4503538 /UG=Hs.183684 eukaryotic translation initiation factor 4 gamma, 2 /FL=gb:U73824.1 gb:U76111.1 gb:NM_001418.1 NM_001418 eukaryotic translation initiation factor 4 gamma, 2 EIF4G2 1982 NM_001042559 /// NM_001172705 /// NM_001418 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0007050 // cell cycle arrest // traceable author statement /// 0008219 // cell death // traceable author statement /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -305.88 2231.71 -3.08 0.02 0.04 -4.50
201432_at 201432_at NM_001752 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001752.1 /DEF=Homo sapiens catalase (CAT), mRNA. /FEA=mRNA /GEN=CAT /PROD=catalase /DB_XREF=gi:4557013 /UG=Hs.76359 catalase /FL=gb:NM_001752.1 NM_001752 catalase CAT 847 NM_001752 0000302 // response to reactive oxygen species // inferred from mutant phenotype /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006195 // purine nucleotide catabolic process // traceable author statement /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009060 // aerobic respiration // inferred from electronic annotation /// 0009650 // UV protection // inferred from mutant phenotype /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0042697 // menopause // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051262 // protein tetramerization // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from sequence or structural similarity /// 0005782 // peroxisomal matrix // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004046 // aminoacylase activity // inferred from electronic annotation /// 0004096 // catalase activity // inferred from direct assay /// 0004096 // catalase activity // traceable author statement /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0016209 // antioxidant activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016684 // oxidoreductase activity, acting on peroxide as acceptor // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from physical interaction /// 0020037 // heme binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from direct assay 62.70 265.62 3.08 0.02 0.04 -4.50
201320_at 201320_at BF663402 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF663402 /FEA=EST /DB_XREF=gi:11937297 /DB_XREF=est:602144558F1 /CLONE=IMAGE:4297695 /UG=Hs.236030 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 /FL=gb:U66616.1 gb:NM_003075.1 BF663402 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 SMARCC2 6601 NM_001130420 /// NM_003075 /// NM_139067 /// XM_005269101 /// XM_005269102 /// XM_005269103 /// XM_005269104 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay 47.80 61.50 3.08 0.02 0.04 -4.50
200642_at 200642_at NM_000454 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000454.1 /DEF=Homo sapiens superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult)) (SOD1), mRNA. /FEA=mRNA /GEN=SOD1 /PROD=superoxide dismutase 1, soluble (amyotrophiclateral sclerosis 1 (adult)) /DB_XREF=gi:4507148 /UG=Hs.75428 superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult)) /FL=gb:BC001034.1 gb:K00065.1 gb:NM_000454.1 NM_000454 superoxide dismutase 1, soluble SOD1 6647 NM_000454 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000303 // response to superoxide // inferred from direct assay /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0001819 // positive regulation of cytokine production // inferred from direct assay /// 0001890 // placenta development // non-traceable author statement /// 0001895 // retina homeostasis // inferred from sequence or structural similarity /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0002262 // myeloid cell homeostasis // inferred from sequence or structural similarity /// 0002576 // platelet degranulation // traceable author statement /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006309 // apoptotic DNA fragmentation // inferred from sequence or structural similarity /// 0006749 // glutathione metabolic process // inferred from sequence or structural similarity /// 0006801 // superoxide metabolic process // inferred from direct assay /// 0006801 // superoxide metabolic process // inferred from sequence or structural similarity /// 0006879 // cellular iron ion homeostasis // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007566 // embryo implantation // inferred from sequence or structural similarity /// 0007566 // embryo implantation // non-traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007569 // cell aging // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0007605 // sensory perception of sound // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0008090 // retrograde axon cargo transport // inferred from sequence or structural similarity /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0008219 // cell death // inferred from electronic annotation /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0010033 // response to organic substance // inferred from direct assay /// 0019226 // transmission of nerve impulse // inferred from sequence or structural similarity /// 0019430 // removal of superoxide radicals // not recorded /// 0019430 // removal of superoxide radicals // inferred from sequence or structural similarity /// 0030168 // platelet activation // traceable author statement /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032287 // peripheral nervous system myelin maintenance // inferred from sequence or structural similarity /// 0032314 // regulation of Rac GTPase activity // inferred from direct assay /// 0032930 // positive regulation of superoxide anion generation // inferred from direct assay /// 0033081 // regulation of T cell differentiation in thymus // non-traceable author statement /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from sequence or structural similarity /// 0042542 // response to hydrogen peroxide // inferred from sequence or structural similarity /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred by curator /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from sequence or structural similarity /// 0045471 // response to ethanol // inferred from sequence or structural similarity /// 0045541 // negative regulation of cholesterol biosynthetic process // inferred from direct assay /// 0045859 // regulation of protein kinase activity // inferred from direct assay /// 0046620 // regulation of organ growth // non-traceable author statement /// 0046688 // response to copper ion // inferred from electronic annotation /// 0046716 // muscle cell cellular homeostasis // inferred from sequence or structural similarity /// 0048538 // thymus development // non-traceable author statement /// 0048678 // response to axon injury // inferred from sequence or structural similarity /// 0050665 // hydrogen peroxide biosynthetic process // inferred from direct assay /// 0050665 // hydrogen peroxide biosynthetic process // inferred from sequence or structural similarity /// 0051881 // regulation of mitochondrial membrane potential // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060047 // heart contraction // inferred from direct assay /// 0060052 // neurofilament cytoskeleton organization // inferred from sequence or structural similarity /// 0060087 // relaxation of vascular smooth muscle // inferred from sequence or structural similarity /// 0060088 // auditory receptor cell stereocilium organization // inferred from sequence or structural similarity /// 0072593 // reactive oxygen species metabolic process // inferred from direct assay /// 1902177 // positive regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0005759 // mitochondrial matrix // non-traceable author statement /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004784 // superoxide dismutase activity // not recorded /// 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // traceable author statement /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0030346 // protein phosphatase 2B binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048365 // Rac GTPase binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction 143.00 982.52 3.08 0.02 0.04 -4.50
212702_s_at 212702_s_at N45111 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N45111 /FEA=EST /DB_XREF=gi:1186277 /DB_XREF=est:yz12f12.s1 /CLONE=IMAGE:282863 /UG=Hs.330988 Homo sapiens, Similar to Bicaudal D (Drosophila) homolog 1, clone IMAGE:3622452, mRNA, partial cds N45111 bicaudal D homolog 2 (Drosophila) BICD2 23299 NM_001003800 /// NM_015250 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0072385 // minus-end-directed organelle transport along microtubule // inferred from sequence or structural similarity /// 0072393 // microtubule anchoring at microtubule organizing center // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0017137 // Rab GTPase binding // inferred from sequence or structural similarity 60.83 124.96 3.08 0.02 0.04 -4.50
204275_at 204275_at AI796687 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI796687 /FEA=EST /DB_XREF=gi:5362150 /DB_XREF=est:wh59f02.x1 /CLONE=IMAGE:2385051 /UG=Hs.55836 small optic lobes (Drosophila) homolog /FL=gb:U85647.1 gb:NM_005632.1 AI796687 calpain 15 CAPN15 6650 NM_005632 /// XM_005255514 /// XM_005255516 /// XM_005255517 /// XM_005255518 /// XM_006720931 /// XM_006720932 /// XM_006720933 /// XM_006720934 /// XM_006720935 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006508 // proteolysis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // traceable author statement /// 0008234 // cysteine-type peptidase activity // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 36.80 68.47 3.07 0.02 0.04 -4.50
209389_x_at 209389_x_at M15887 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M15887.1 /DEF=Human endozepine (putative ligand of benzodiazepine receptor) mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:181960 /UG=Hs.78888 diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) /FL=gb:M15887.1 M15887 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) DBI 1622 NM_001079862 /// NM_001079863 /// NM_001178017 /// NM_001178041 /// NM_001178042 /// NM_001178043 /// NM_001282633 /// NM_001282634 /// NM_001282635 /// NM_001282636 /// NM_020548 /// NR_104221 0001942 // hair follicle development // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0018345 // protein palmitoylation // inferred from direct assay /// 0036151 // phosphatidylcholine acyl-chain remodeling // inferred from direct assay /// 0043588 // skin development // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097038 // perinuclear endoplasmic reticulum // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0030156 // benzodiazepine receptor binding // traceable author statement /// 0036042 // long-chain fatty acyl-CoA binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from direct assay 121.38 763.29 3.07 0.02 0.04 -4.50
218167_at 218167_at NM_016627 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016627.1 /DEF=Homo sapiens hypothetical protein (LOC51321), mRNA. /FEA=mRNA /GEN=LOC51321 /PROD=hypothetical protein /DB_XREF=gi:7706167 /UG=Hs.268122 hypothetical protein /FL=gb:AF208856.1 gb:NM_016627.1 NM_016627 archaelysin family metallopeptidase 2 AMZ2 51321 NM_001033569 /// NM_001033570 /// NM_001033571 /// NM_001033572 /// NM_001033574 /// NM_001289054 /// NM_001289056 /// NM_016627 /// XM_005257432 /// XM_005257433 /// XM_005257435 /// XM_005257436 /// XM_005257437 /// XM_005257438 /// XM_006721940 0006508 // proteolysis // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 49.33 226.84 3.07 0.02 0.04 -4.50
214578_s_at 214578_s_at AV683882 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV683882 /FEA=EST /DB_XREF=gi:10285745 /DB_XREF=est:AV683882 /CLONE=GKCAIC05 /UG=Hs.17820 Rho-associated, coiled-coil containing protein kinase 1 /FL=gb:U43195.1 gb:NM_005406.1 AV683882 Rho-associated, coiled-coil containing protein kinase 1 ROCK1 6093 NM_005406 0003383 // apical constriction // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006939 // smooth muscle contraction // traceable author statement /// 0007159 // leukocyte cell-cell adhesion // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from mutant phenotype /// 0022614 // membrane to membrane docking // inferred from direct assay /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // traceable author statement /// 0032060 // bleb assembly // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // traceable author statement /// 0032970 // regulation of actin filament-based process // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045616 // regulation of keratinocyte differentiation // inferred from mutant phenotype /// 0050900 // leukocyte migration // inferred from direct assay /// 0050901 // leukocyte tethering or rolling // inferred from direct assay /// 0051451 // myoblast migration // inferred from sequence or structural similarity /// 0051492 // regulation of stress fiber assembly // traceable author statement /// 0051893 // regulation of focal adhesion assembly // traceable author statement /// 0051894 // positive regulation of focal adhesion assembly // inferred from sequence or structural similarity /// 2000114 // regulation of establishment of cell polarity // traceable author statement /// 2000145 // regulation of cell motility // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0032059 // bleb // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -36.50 134.62 -3.07 0.02 0.04 -4.50
203241_at 203241_at NM_003369 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003369.1 /DEF=Homo sapiens UV radiation resistance associated gene (UVRAG), mRNA. /FEA=mRNA /GEN=UVRAG /PROD=UV radiation resistance associated gene /DB_XREF=gi:4507860 /UG=Hs.13137 UV radiation resistance associated gene /FL=gb:NM_003369.1 gb:AB012958.1 NM_003369 UV radiation resistance associated UVRAG 7405 NM_003369 /// XM_005274209 /// XM_006718673 /// XM_006718674 /// XM_006718675 0006281 // DNA repair // traceable author statement /// 0010508 // positive regulation of autophagy // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation -38.90 161.65 -3.07 0.02 0.04 -4.50
217790_s_at 217790_s_at NM_007107 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007107.1 /DEF=Homo sapiens signal sequence receptor, gamma (translocon-associated protein gamma) (SSR3), mRNA. /FEA=mRNA /GEN=SSR3 /PROD=signal sequence receptor, gamma(translocon-associated protein gamma) /DB_XREF=gi:6005883 /UG=Hs.28707 signal sequence receptor, gamma (translocon-associated protein gamma) /FL=gb:AF110647.1 gb:NM_007107.1 NM_007107 signal sequence receptor, gamma (translocon-associated protein gamma) SSR3 6747 NM_007107 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from electronic annotation 46.47 67.51 3.07 0.02 0.04 -4.50
205480_s_at 205480_s_at NM_006759 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006759.2 /DEF=Homo sapiens UDP-glucose pyrophosphorylase 2 (UGP2), mRNA. /FEA=mRNA /GEN=UGP2 /PROD=UDP-glucose pyrophosphorylase 2 /DB_XREF=gi:13027637 /UG=Hs.77837 UDP-glucose pyrophosphorylase 2 /FL=gb:NM_006759.2 NM_006759 UDP-glucose pyrophosphorylase 2 UGP2 7360 NM_001001521 /// NM_006759 /// XM_005264537 /// XM_005264538 /// XM_006712088 /// XM_006712089 /// XR_426996 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006011 // UDP-glucose metabolic process // inferred from electronic annotation /// 0006065 // UDP-glucuronate biosynthetic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // non-traceable author statement /// 0019255 // glucose 1-phosphate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0052695 // cellular glucuronidation // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003983 // UTP:glucose-1-phosphate uridylyltransferase activity // not recorded /// 0003983 // UTP:glucose-1-phosphate uridylyltransferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005536 // glucose binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0032557 // pyrimidine ribonucleotide binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -69.85 436.75 -3.07 0.02 0.04 -4.50
211998_at 211998_at AW138159 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW138159 /FEA=EST /DB_XREF=gi:6142559 /DB_XREF=est:UI-H-BI1-acy-d-03-0-UI.s1 /CLONE=IMAGE:2716060 /UG=Hs.180877 H3 histone, family 3B (H3.3B) /FL=gb:NM_005324.1 AW138159 H3 histone, family 3A /// H3 histone, family 3B (H3.3B) /// microRNA 4738 H3F3A /// H3F3B /// MIR4738 3020 /// 3021 /// 100616282 NM_002107 /// NM_005324 /// NR_039892 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 30.80 59.02 3.07 0.02 0.04 -4.50
220597_s_at 220597_s_at NM_018694 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018694.1 /DEF=Homo sapiens HSVI binding protein (LOC55913), mRNA. /FEA=mRNA /GEN=LOC55913 /PROD=HSVI binding protein /DB_XREF=gi:8923906 /UG=Hs.306208 HSVI binding protein /FL=gb:AF267748.1 gb:NM_018694.1 NM_018694 ADP-ribosylation factor-like 6 interacting protein 4 ARL6IP4 51329 NM_001002251 /// NM_001002252 /// NM_001278378 /// NM_001278379 /// NM_001278380 /// NM_016638 /// NM_018694 /// NR_103512 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 50.80 161.80 3.07 0.02 0.04 -4.50
208676_s_at 208676_s_at U87954 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U87954.1 /DEF=Human erbB3 binding protein EBP1 mRNA, complete cds. /FEA=mRNA /GEN=EBP1 /PROD=erbB3 binding protein EBP1 /DB_XREF=gi:4099505 /UG=Hs.5181 proliferation-associated 2G4, 38kD /FL=gb:BC001951.1 gb:U59435.1 gb:U87954.1 gb:NM_006191.1 U87954 proliferation-associated 2G4, 38kDa PA2G4 5036 NM_006191 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009987 // cellular process // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 66.48 298.59 3.07 0.02 0.04 -4.50
212013_at 212013_at D86983 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D86983.1 /DEF=Human mRNA for KIAA0230 gene, partial cds. /FEA=mRNA /GEN=KIAA0230 /DB_XREF=gi:1504039 /UG=Hs.118893 Melanoma associated gene D86983 peroxidasin homolog (Drosophila) PXDN 7837 NM_012293 /// XM_005264707 /// XM_006711896 0001960 // negative regulation of cytokine-mediated signaling pathway // non-traceable author statement /// 0006955 // immune response // non-traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from direct assay /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay 0004601 // peroxidase activity // inferred from direct assay /// 0005152 // interleukin-1 receptor antagonist activity // non-traceable author statement /// 0005201 // extracellular matrix structural constituent // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -160.65 832.58 -3.06 0.02 0.04 -4.50
204677_at 204677_at NM_001795 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001795.1 /DEF=Homo sapiens cadherin 5, type 2, VE-cadherin (vascular epithelium) (CDH5), mRNA. /FEA=mRNA /GEN=CDH5 /PROD=cadherin 5, type 2, VE-cadherin (vascularepithelium) /DB_XREF=gi:4502726 /UG=Hs.76206 cadherin 5, type 2, VE-cadherin (vascular epithelium) /FL=gb:U84722.1 gb:NM_001795.1 gb:AB035304.1 NM_001795 cadherin 5, type 2 (vascular endothelium) CDH5 1003 NM_001114117 /// NM_001795 0001955 // blood vessel maturation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0045216 // cell-cell junction organization // traceable author statement /// 2000114 // regulation of establishment of cell polarity // inferred from mutant phenotype 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from sequence or structural similarity /// 0071944 // cell periphery // inferred from electronic annotation 0005102 // receptor binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -532.85 1726.30 -3.06 0.02 0.04 -4.50
212432_at 212432_at AL542571 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL542571 /FEA=EST /DB_XREF=gi:12874746 /DB_XREF=est:AL542571 /CLONE=CS0DE012YH08 (5 prime) /UG=Hs.151903 GrpE-like protein cochaperone AL542571 GrpE-like 1, mitochondrial (E. coli) GRPEL1 80273 NM_025196 0006457 // protein folding // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0030150 // protein import into mitochondrial matrix // non-traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay 0000774 // adenyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from electronic annotation -50.40 296.07 -3.06 0.02 0.04 -4.50
201306_s_at 201306_s_at NM_006401 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006401.1 /DEF=Homo sapiens acidic protein rich in leucines (SSP29), mRNA. /FEA=mRNA /GEN=SSP29 /PROD=acidic protein rich in leucines /DB_XREF=gi:5454087 /UG=Hs.84264 acidic protein rich in leucines /FL=gb:U70439.1 gb:NM_006401.1 NM_006401 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B ANP32B 10541 NM_006401 0006334 // nucleosome assembly // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045596 // negative regulation of cell differentiation // inferred from direct assay /// 0046827 // positive regulation of protein export from nucleus // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0042393 // histone binding // inferred from direct assay /// 0070063 // RNA polymerase binding // inferred from direct assay -250.15 1170.38 -3.06 0.02 0.04 -4.50
201749_at 201749_at BF969352 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF969352 /FEA=EST /DB_XREF=gi:12336567 /DB_XREF=est:602271616F1 /CLONE=IMAGE:4359794 /UG=Hs.288203 endothelin converting enzyme 1 /FL=gb:NM_001397.1 gb:AB031742.1 gb:D49471.1 BF969352 endothelin converting enzyme 1 ECE1 1889 NM_001113347 /// NM_001113348 /// NM_001113349 /// NM_001397 /// XM_006710398 0001921 // positive regulation of receptor recycling // inferred from mutant phenotype /// 0003100 // regulation of systemic arterial blood pressure by endothelin // inferred by curator /// 0006508 // proteolysis // inferred from electronic annotation /// 0007507 // heart development // inferred from mutant phenotype /// 0010814 // substance P catabolic process // inferred from direct assay /// 0010815 // bradykinin catabolic process // inferred from direct assay /// 0010816 // calcitonin catabolic process // inferred from direct assay /// 0016485 // protein processing // inferred from direct assay /// 0016486 // peptide hormone processing // inferred from direct assay /// 0019229 // regulation of vasoconstriction // inferred by curator /// 0034959 // endothelin maturation // inferred from direct assay /// 0042447 // hormone catabolic process // inferred from direct assay /// 0042733 // embryonic digit morphogenesis // inferred from mutant phenotype /// 0043583 // ear development // inferred from mutant phenotype /// 0060037 // pharyngeal system development // inferred from electronic annotation 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0031302 // intrinsic component of endosome membrane // traceable author statement /// 0031982 // vesicle // inferred from sequence or structural similarity /// 0033093 // Weibel-Palade body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -81.88 347.96 -3.06 0.02 0.04 -4.50
219071_x_at 219071_x_at NM_016458 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016458.2 /DEF=Homo sapiens hypothetical protein (LOC51236), mRNA. /FEA=mRNA /GEN=LOC51236 /PROD=hypothetical protein MGC4355 /DB_XREF=gi:13124772 /UG=Hs.300224 hypothetical protein /FL=gb:BC003035.1 gb:NM_016458.2 NM_016458 HGH1 homolog (S. cerevisiae) HGH1 51236 NM_016458 0005488 // binding // inferred from electronic annotation 32.22 199.41 3.06 0.02 0.04 -4.50
215749_s_at 215749_s_at AK001574 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001574.1 /DEF=Homo sapiens cDNA FLJ10712 fis, clone NT2RP3000919, highly similar to Rattus norvegicus golgi peripheral membrane protein p65 mRNA. /FEA=mRNA /DB_XREF=gi:7022910 /UG=Hs.4291 hypothetical protein FLJ23443 AK001574 golgi reassembly stacking protein 1, 65kDa GORASP1 64689 NM_001278789 /// NM_001278790 /// NM_031899 /// NR_103866 /// NR_103867 /// XM_006713300 /// XM_006713301 /// XM_006713302 /// XR_427284 /// XR_427285 0000278 // mitotic cell cycle // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0050774 // negative regulation of dendrite morphogenesis // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 44.68 89.41 3.06 0.02 0.04 -4.50
217822_at 217822_at NM_016312 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016312.1 /DEF=Homo sapiens Npw38-binding protein NpwBP (LOC51729), mRNA. /FEA=mRNA /GEN=LOC51729 /PROD=Npw38-binding protein NpwBP /DB_XREF=gi:7706500 /UG=Hs.16420 Npw38-binding protein NpwBP /FL=gb:BC001621.1 gb:AF118023.1 gb:AB029309.1 gb:NM_016312.1 NM_016312 WW domain binding protein 11 WBP11 51729 NM_016312 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0003697 // single-stranded DNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008599 // protein phosphatase type 1 regulator activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050699 // WW domain binding // inferred from physical interaction 49.80 180.82 3.06 0.02 0.04 -4.50
207127_s_at 207127_s_at NM_021644 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021644.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein H3 (2H9) (HNRPH3), mRNA. /FEA=mRNA /GEN=HNRPH3 /PROD=DKFZP586F0222 protein /DB_XREF=gi:11056058 /UG=Hs.279681 heterogeneous nuclear ribonucleoprotein H3 (2H9) /FL=gb:NM_021644.1 NM_021644 heterogeneous nuclear ribonucleoprotein H3 (2H9) HNRNPH3 3189 NM_012207 /// NM_021644 /// XM_005269748 /// XM_005269749 /// XM_005269751 /// XM_005269752 /// XM_005269753 /// XM_005269754 /// XM_006717816 /// XM_006717817 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -40.88 197.16 -3.06 0.02 0.04 -4.50
200763_s_at 200763_s_at NM_001003 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001003.1 /DEF=Homo sapiens ribosomal protein, large, P1 (RPLP1), mRNA. /FEA=mRNA /GEN=RPLP1 /PROD=ribosomal protein, large, P1 /DB_XREF=gi:4506668 /UG=Hs.177592 ribosomal protein, large, P1 /FL=gb:BC003369.1 gb:M17886.1 gb:NM_001003.1 NM_001003 ribosomal protein, large, P1 RPLP1 6176 NM_001003 /// NM_213725 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction -608.38 3328.84 -3.05 0.02 0.04 -4.50
213457_at 213457_at BF739959 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF739959 /FEA=EST /DB_XREF=gi:12066635 /DB_XREF=est:7o41e04.x1 /CLONE=IMAGE:3576678 /UG=Hs.24724 MFH-amplified sequences with leucine-rich tandem repeats 1 /FL=gb:AB016816.1 gb:NM_004225.1 BF739959 malignant fibrous histiocytoma amplified sequence 1 MFHAS1 9258 NM_004225 /// XR_246634 0005515 // protein binding // inferred from physical interaction -45.37 75.21 -3.05 0.02 0.04 -4.50
211467_s_at 211467_s_at U70862 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U70862.1 /DEF=Human nuclear factor I B3 mRNA, complete cds. /FEA=mRNA /PROD=nuclear factor I B3 /DB_XREF=gi:1916623 /UG=Hs.33287 nuclear factor IB /FL=gb:U70862.1 U70862 nuclear factor I/B NFIB 4781 NM_001190737 /// NM_001190738 /// NM_001282787 /// NM_005596 /// XM_005251467 /// XM_005251468 /// XM_005251469 /// XM_005251470 /// XM_005251471 /// XM_006716773 /// XM_006716774 /// XM_006716775 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002062 // chondrocyte differentiation // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from sequence or structural similarity /// 0021740 // principal sensory nucleus of trigeminal nerve development // inferred from sequence or structural similarity /// 0021960 // anterior commissure morphogenesis // inferred from sequence or structural similarity /// 0030324 // lung development // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060486 // Clara cell differentiation // inferred from sequence or structural similarity /// 0060509 // Type I pneumocyte differentiation // inferred from sequence or structural similarity /// 0060510 // Type II pneumocyte differentiation // inferred from sequence or structural similarity /// 0061141 // lung ciliated cell differentiation // inferred from sequence or structural similarity /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 2000791 // negative regulation of mesenchymal cell proliferation involved in lung development // inferred from sequence or structural similarity /// 2000795 // negative regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0044300 // cerebellar mossy fiber // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 50.13 101.99 3.05 0.02 0.04 -4.50
221700_s_at 221700_s_at AF348700 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF348700.1 /DEF=Homo sapiens ubiquitin A-52 residue ribosomal protein fusion product 1 (UBA52), mRNA, complete cds. /FEA=mRNA /GEN=UBA52 /PROD=ubiquitin A-52 residue ribosomal protein fusionproduct 1 /DB_XREF=gi:13569611 /FL=gb:AF348700.1 AF348700 ubiquitin A-52 residue ribosomal protein fusion product 1 UBA52 7311 NM_001033930 /// NM_003333 /// XM_005260050 /// XM_005260051 /// XM_005260052 /// XM_005260053 /// XM_005260054 /// XM_006722871 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007144 // female meiosis I // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007254 // JNK cascade // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008585 // female gonad development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010992 // ubiquitin homeostasis // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0021888 // hypothalamus gonadotrophin-releasing hormone neuron development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0032479 // regulation of type I interferon production // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060613 // fat pad development // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement /// 0072520 // seminiferous tubule development // inferred from electronic annotation /// 0075733 // intracellular transport of virus // traceable author statement /// 0097009 // energy homeostasis // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction -122.12 1805.99 -3.05 0.02 0.04 -4.50
221473_x_at 221473_x_at U49188 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U49188.1 /DEF=Human placenta (Diff33) mRNA, complete cds. /FEA=mRNA /GEN=Diff33 /DB_XREF=gi:1293562 /UG=Hs.272168 tumor differentially expressed 1 /FL=gb:U49188.1 gb:AF112227.1 gb:AF153979.1 gb:NM_006811.1 U49188 serine incorporator 3 SERINC3 10955 NM_006811 /// NM_198941 1902237 // positive regulation of intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -137.97 280.79 -3.05 0.02 0.04 -4.50
211317_s_at 211317_s_at AF041461 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF041461.1 /DEF=Homo sapiens I-FLICE isoform 4 mRNA, complete cds. /FEA=mRNA /PROD=I-FLICE isoform 4 /DB_XREF=gi:2827295 /UG=Hs.195175 CASP8 and FADD-like apoptosis regulator /FL=gb:AF041461.1 AF041461 CASP8 and FADD-like apoptosis regulator CFLAR 8837 NM_001127183 /// NM_001127184 /// NM_001202515 /// NM_001202516 /// NM_001202517 /// NM_001202518 /// NM_001202519 /// NM_003879 /// XM_005246935 /// XM_005246936 /// XM_005246937 /// XM_005246938 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0014732 // skeletal muscle atrophy // inferred from sequence or structural similarity /// 0014842 // regulation of satellite cell proliferation // inferred from sequence or structural similarity /// 0014866 // skeletal myofibril assembly // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043403 // skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0060544 // regulation of necroptotic process // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1901740 // negative regulation of myoblast fusion // inferred from sequence or structural similarity /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031264 // death-inducing signaling complex // inferred from direct assay /// 0031265 // CD95 death-inducing signaling complex // inferred from electronic annotation /// 0097342 // ripoptosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0035877 // death effector domain binding // not recorded 54.52 167.64 3.05 0.02 0.04 -4.50
212586_at 212586_at AA195244 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA195244 /FEA=EST /DB_XREF=gi:1784944 /DB_XREF=est:zr36b02.s1 /CLONE=IMAGE:665451 /UG=Hs.247043 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator AA195244 calpastatin CAST 831 NM_001042440 /// NM_001042441 /// NM_001042442 /// NM_001042443 /// NM_001042444 /// NM_001042445 /// NM_001042446 /// NM_001190442 /// NM_001284212 /// NM_001284213 /// NM_001750 /// NM_173060 /// NM_173061 /// NM_173062 /// NM_173063 /// NR_033798 /// NR_104285 /// XM_006714696 /// XM_006714697 /// XM_006714698 /// XM_006714699 /// XM_006714700 /// XM_006714701 /// XM_006714702 /// XM_006714703 /// XM_006714704 /// XM_006714705 /// XM_006714706 /// XM_006714707 /// XM_006714708 /// XM_006714709 /// XM_006714710 /// XM_006714711 /// XM_006714712 /// XM_006714713 /// XM_006714714 /// XM_006714715 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // traceable author statement /// 2000675 // negative regulation of type B pancreatic cell apoptotic process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0004866 // endopeptidase inhibitor activity // traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // non-traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 85.70 375.25 3.05 0.02 0.04 -4.50
220948_s_at 220948_s_at NM_000701 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000701.1 /DEF=Homo sapiens ATPase, Na+K+ transporting, alpha 1 polypeptide (ATP1A1), mRNA. /FEA=mRNA /GEN=ATP1A1 /PROD=ATPase, Na+K+ transporting, alpha 1polypeptide /DB_XREF=gi:4502268 /UG=Hs.76549 ATPase, Na+K+ transporting, alpha 1 polypeptide /FL=gb:NM_000701.1 gb:U16798.1 NM_000701 ATPase, Na+/K+ transporting, alpha 1 polypeptide ATP1A1 476 NM_000701 /// NM_001001586 /// NM_001160233 /// NM_001160234 /// XM_006710655 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002028 // regulation of sodium ion transport // inferred from sequence or structural similarity /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0010107 // potassium ion import // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation /// 0031947 // negative regulation of glucocorticoid biosynthetic process // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0035725 // sodium ion transmembrane transport // inferred from electronic annotation /// 0035725 // sodium ion transmembrane transport // inferred from sequence or structural similarity /// 0035725 // sodium ion transmembrane transport // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045823 // positive regulation of heart contraction // inferred from electronic annotation /// 0045989 // positive regulation of striated muscle contraction // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060081 // membrane hyperpolarization // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0086004 // regulation of cardiac muscle cell contraction // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015077 // monovalent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0019829 // cation-transporting ATPase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030506 // ankyrin binding // inferred from electronic annotation /// 0030955 // potassium ion binding // inferred from electronic annotation /// 0031402 // sodium ion binding // inferred from electronic annotation /// 0043531 // ADP binding // inferred from electronic annotation /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from sequence or structural similarity -129.80 472.02 -3.04 0.02 0.04 -4.50
200996_at 200996_at NM_005721 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005721.2 /DEF=Homo sapiens ARP3 (actin-related protein 3, yeast) homolog (ACTR3), mRNA. /FEA=mRNA /GEN=ACTR3 /PROD=ARP3 (actin-related protein 3, yeast) homolog /DB_XREF=gi:7262289 /UG=Hs.5321 ARP3 (actin-related protein 3, yeast) homolog /FL=gb:AF006083.1 gb:NM_005721.2 NM_005721 ARP3 actin-related protein 3 homolog (yeast) ACTR3 10096 NM_001277140 /// NM_005721 /// NR_102318 0006928 // cellular component movement // traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0008356 // asymmetric cell division // inferred from electronic annotation /// 0009743 // response to carbohydrate // inferred from electronic annotation /// 0010592 // positive regulation of lamellipodium assembly // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0033206 // meiotic cytokinesis // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043519 // regulation of myosin II filament organization // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from electronic annotation /// 0051321 // meiotic cell cycle // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051653 // spindle localization // inferred from electronic annotation /// 0060271 // cilium morphogenesis // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation -101.60 965.42 -3.04 0.02 0.04 -4.50
208852_s_at 208852_s_at AI761759 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI761759 /FEA=EST /DB_XREF=gi:5177515 /DB_XREF=est:wg67h12.x1 /CLONE=IMAGE:2370215 /UG=Hs.155560 calnexin /FL=gb:NM_001746.1 gb:BC003552.1 gb:M94859.1 gb:M98452.1 gb:L10284.1 gb:L18887.1 AI761759 calnexin CANX 821 NM_001024649 /// NM_001746 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0009306 // protein secretion // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048488 // synaptic vesicle endocytosis // inferred from sequence or structural similarity /// 0061077 // chaperone-mediated protein folding // inferred from electronic annotation /// 0072583 // clathrin-mediated endocytosis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0001948 // glycoprotein binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation -286.83 1055.94 -3.04 0.02 0.04 -4.50
209187_at 209187_at AW516932 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW516932 /FEA=EST /DB_XREF=gi:7154941 /DB_XREF=est:xq04a05.x1 /CLONE=IMAGE:2748848 /UG=Hs.16697 down-regulator of transcription 1, TBP-binding (negative cofactor 2) /FL=gb:BC002809.1 AW516932 down-regulator of transcription 1, TBP-binding (negative cofactor 2) DR1 1810 NM_001938 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // traceable author statement /// 0017025 // TBP-class protein binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 28.48 133.51 3.04 0.02 0.04 -4.50
215458_s_at 215458_s_at AF199364 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF199364.2 /DEF=Homo sapiens E3 ubiquitin ligase SMURF1 mRNA, partial cds. /FEA=mRNA /PROD=E3 ubiquitin ligase SMURF1 /DB_XREF=gi:6446605 /UG=Hs.119120 E3 ubiquitin ligase SMURF1 AF199364 SMAD specific E3 ubiquitin protein ligase 1 SMURF1 57154 NM_001199847 /// NM_020429 /// NM_181349 /// XM_005250507 /// XM_006716061 /// XM_006716062 0000209 // protein polyubiquitination // inferred from direct assay /// 0006611 // protein export from nucleus // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007398 // ectoderm development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0030154 // cell differentiation // inferred from direct assay /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030514 // negative regulation of BMP signaling pathway // traceable author statement /// 0030579 // ubiquitin-dependent SMAD protein catabolic process // inferred from direct assay /// 0032801 // receptor catabolic process // inferred from direct assay /// 0034394 // protein localization to cell surface // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0048185 // activin binding // non-traceable author statement /// 0070411 // I-SMAD binding // inferred from physical interaction /// 0070412 // R-SMAD binding // inferred from physical interaction -39.95 65.50 -3.04 0.02 0.04 -4.50
209380_s_at 209380_s_at AF146074 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF146074.1 /DEF=Homo sapiens ABC protein mRNA, complete cds. /FEA=mRNA /PROD=ABC protein /DB_XREF=gi:5006890 /UG=Hs.108660 ATP-binding cassette, sub-family C (CFTRMRP), member 5 /FL=gb:AF104942.1 gb:AB019002.1 gb:AF146074.1 gb:NM_005688.1 gb:U83661.2 AF146074 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 ABCC5 10057 NM_001023587 /// NM_005688 /// XM_005247058 /// XM_005247059 0005975 // carbohydrate metabolic process // traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0015711 // organic anion transport // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030213 // hyaluronan biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // traceable author statement /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 38.95 124.03 3.04 0.02 0.04 -4.50
201821_s_at 201821_s_at BC004439 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004439.1 /DEF=Homo sapiens, translocase of inner mitochondrial membrane 17 (yeast) homolog A, clone MGC:4031, mRNA, complete cds. /FEA=mRNA /PROD=translocase of inner mitochondrial membrane 17(yeast) homolog A /DB_XREF=gi:13325239 /UG=Hs.20716 translocase of inner mitochondrial membrane 17 (yeast) homolog A /FL=gb:BC004439.1 gb:AF106622.1 gb:NM_006335.1 BC004439 translocase of inner mitochondrial membrane 17 homolog A (yeast) TIMM17A 10440 NM_006335 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071806 // protein transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031305 // integral component of mitochondrial inner membrane // inferred from direct assay 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation 106.23 332.26 3.04 0.02 0.04 -4.50
217718_s_at 217718_s_at NM_014052 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014052.1 /DEF=Homo sapiens GW128 protein (GW128), mRNA. /FEA=mRNA /GEN=GW128 /PROD=GW128 protein /DB_XREF=gi:7661715 /UG=Hs.182238 GW128 protein /FL=gb:AF107406.1 gb:NM_014052.1 NM_014052 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta YWHAB 7529 NM_003404 /// NM_139323 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0006605 // protein targeting // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035308 // negative regulation of protein dephosphorylation // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051220 // cytoplasmic sequestering of protein // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0050815 // phosphoserine binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 147.10 1373.95 3.04 0.02 0.04 -4.50
209179_s_at 209179_s_at BC003164 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003164.1 /DEF=Homo sapiens, clone MGC:4221, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:4221) /DB_XREF=gi:13111982 /UG=Hs.78768 malignant cell expression-enhanced genetumor progression-enhanced gene /FL=gb:BC002512.1 gb:BC003164.1 BC003164 membrane bound O-acyltransferase domain containing 7 MBOAT7 79143 NM_001146056 /// NM_001146082 /// NM_001146083 /// NM_024298 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0021591 // ventricular system development // inferred from electronic annotation /// 0036149 // phosphatidylinositol acyl-chain remodeling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 85.02 193.21 3.04 0.02 0.04 -4.50
201947_s_at 201947_s_at NM_006431 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006431.1 /DEF=Homo sapiens chaperonin containing TCP1, subunit 2 (beta) (CCT2), mRNA. /FEA=mRNA /GEN=CCT2 /PROD=chaperonin containing TCP1, subunit 2 (beta) /DB_XREF=gi:5453602 /UG=Hs.6456 chaperonin containing TCP1, subunit 2 (beta) /FL=gb:AF026293.1 gb:AF026166.1 gb:NM_006431.1 NM_006431 chaperonin containing TCP1, subunit 2 (beta) CCT2 10576 NM_001198842 /// NM_006431 0006457 // protein folding // non-traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051131 // chaperone-mediated protein complex assembly // inferred from mutant phenotype 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // non-traceable author statement 134.13 883.06 3.04 0.02 0.04 -4.50
200074_s_at 200074_s_at U16738 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U16738.1 /DEF=Homo sapiens CAG-isl 7 mRNA, complete cds. /FEA=mRNA /PROD=CAG-isl 7 /DB_XREF=gi:608516 /UG=Hs.738 ribosomal protein L14 /FL=gb:U16738.1 U16738 ribosomal protein L14 RPL14 9045 NM_001034996 /// NM_003973 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -265.92 1612.06 -3.03 0.02 0.04 -4.50
212434_at 212434_at AI984421 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI984421 /FEA=EST /DB_XREF=gi:5811698 /DB_XREF=est:wr89a12.x1 /CLONE=IMAGE:2494846 /UG=Hs.151903 GrpE-like protein cochaperone AI984421 GrpE-like 1, mitochondrial (E. coli) GRPEL1 80273 NM_025196 0006457 // protein folding // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0030150 // protein import into mitochondrial matrix // non-traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay 0000774 // adenyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from electronic annotation -76.25 251.28 -3.03 0.02 0.04 -4.50
204067_at 204067_at AA129776 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA129776 /FEA=EST /DB_XREF=gi:1690187 /DB_XREF=est:zl16h11.s1 /CLONE=IMAGE:502149 /UG=Hs.16340 sulfite oxidase /FL=gb:NM_000456.1 gb:L31573.1 AA129776 sulfite oxidase SUOX 6821 NM_000456 /// NM_001032386 /// NM_001032387 /// XM_005269112 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0000098 // sulfur amino acid catabolic process // traceable author statement /// 0006790 // sulfur compound metabolic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070221 // sulfide oxidation, using sulfide:quinone oxidoreductase // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement 0008482 // sulfite oxidase activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0030151 // molybdenum ion binding // inferred from electronic annotation /// 0043546 // molybdopterin cofactor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 43.40 70.22 3.03 0.02 0.04 -4.50
202841_x_at 202841_x_at NM_007346 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007346.1 /DEF=Homo sapiens 7-60 protein (7-60), mRNA. /FEA=mRNA /GEN=7-60 /PROD=7-60 protein /DB_XREF=gi:6671492 /UG=Hs.67896 7-60 protein /FL=gb:AF109134.1 gb:NM_007346.1 gb:AF172451.1 NM_007346 opioid growth factor receptor OGFR 11054 NM_007346 0001558 // regulation of cell growth // non-traceable author statement /// 0038003 // opioid receptor signaling pathway // non-traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004985 // opioid receptor activity // non-traceable author statement -33.47 113.74 -3.03 0.02 0.04 -4.50
204863_s_at 204863_s_at BE856546 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE856546 /FEA=EST /DB_XREF=gi:10369675 /DB_XREF=est:7f64a11.x1 /CLONE=IMAGE:3299420 /UG=Hs.82065 interleukin 6 signal transducer (gp130, oncostatin M receptor) /FL=gb:M57230.1 gb:NM_002184.1 BE856546 interleukin 6 signal transducer IL6ST 3572 NM_001190981 /// NM_002184 /// NM_175767 /// NR_120480 /// XM_005248496 0002675 // positive regulation of acute inflammatory response // inferred by curator /// 0002821 // positive regulation of adaptive immune response // inferred by curator /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // traceable author statement /// 0010613 // positive regulation of cardiac muscle hypertrophy // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0034097 // response to cytokine // inferred from direct assay /// 0038154 // interleukin-11-mediated signaling pathway // inferred from electronic annotation /// 0038165 // oncostatin-M-mediated signaling pathway // inferred from mutant phenotype /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from genetic interaction /// 0070102 // interleukin-6-mediated signaling pathway // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from direct assay /// 0070106 // interleukin-27-mediated signaling pathway // inferred from mutant phenotype /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005896 // interleukin-6 receptor complex // inferred from direct assay /// 0005900 // oncostatin-M receptor complex // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from direct assay 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from direct assay /// 0004915 // interleukin-6 receptor activity // inferred from genetic interaction /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // inferred from genetic interaction /// 0004924 // oncostatin-M receptor activity // inferred from direct assay /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from physical interaction /// 0005138 // interleukin-6 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0019838 // growth factor binding // inferred from physical interaction /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0045509 // interleukin-27 receptor activity // inferred by curator -154.43 285.59 -3.03 0.02 0.04 -4.50
201899_s_at 201899_s_at NM_003336 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003336.1 /DEF=Homo sapiens ubiquitin-conjugating enzyme E2A (RAD6 homolog) (UBE2A), mRNA. /FEA=mRNA /GEN=UBE2A /PROD=ubiquitin-conjugating enzyme E2A (RAD6 homolog) /DB_XREF=gi:4507768 /UG=Hs.80612 ubiquitin-conjugating enzyme E2A (RAD6 homolog) /FL=gb:M74524.1 gb:NM_003336.1 NM_003336 ubiquitin-conjugating enzyme E2A UBE2A 7319 NM_001282161 /// NM_003336 /// NM_181762 /// NM_181777 0000209 // protein polyubiquitination // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006281 // DNA repair // inferred from genetic interaction /// 0006301 // postreplication repair // non-traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009411 // response to UV // inferred from genetic interaction /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0000785 // chromatin // inferred from sequence or structural similarity /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0001741 // XY body // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0033503 // HULC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction 69.52 302.41 3.03 0.02 0.04 -4.50
214141_x_at 214141_x_at BF033354 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF033354 /FEA=EST /DB_XREF=gi:10741066 /DB_XREF=est:601458055F1 /CLONE=IMAGE:3861709 /UG=Hs.184167 splicing factor, arginineserine-rich 7 (35kD) BF033354 serine/arginine-rich splicing factor 7 SRSF7 6432 NM_001031684 /// NM_001195446 /// NM_006276 /// XM_005264484 /// XM_005264485 /// XM_005264486 /// XR_426994 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 122.67 729.26 3.02 0.02 0.04 -4.50
201251_at 201251_at NM_002654 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002654.1 /DEF=Homo sapiens pyruvate kinase, muscle (PKM2), mRNA. /FEA=mRNA /GEN=PKM2 /PROD=pyruvate kinase, muscle /DB_XREF=gi:4505838 /UG=Hs.198281 pyruvate kinase, muscle /FL=gb:BC000481.1 gb:M23725.1 gb:M26252.1 gb:NM_002654.1 NM_002654 pyruvate kinase, muscle PKM 5315 NM_001206796 /// NM_001206797 /// NM_001206798 /// NM_001206799 /// NM_002654 /// NM_182470 /// NM_182471 /// XM_005254443 /// XM_005254445 /// XM_006720570 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005929 // cilium // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004743 // pyruvate kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0030955 // potassium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -158.90 1333.00 -3.02 0.02 0.04 -4.50
205546_s_at 205546_s_at NM_003331 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003331.1 /DEF=Homo sapiens tyrosine kinase 2 (TYK2), mRNA. /FEA=mRNA /GEN=TYK2 /PROD=tyrosine kinase 2 /DB_XREF=gi:4507748 /UG=Hs.75516 tyrosine kinase 2 /FL=gb:NM_003331.1 NM_003331 tyrosine kinase 2 TYK2 7297 NM_003331 0006468 // protein phosphorylation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060338 // regulation of type I interferon-mediated signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005131 // growth hormone receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from electronic annotation -35.75 113.92 -3.02 0.02 0.04 -4.50
202109_at 202109_at NM_012402 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012402.1 /DEF=Homo sapiens partner of RAC1 (arfaptin 2) (POR1), mRNA. /FEA=mRNA /GEN=POR1 /PROD=partner of RAC1 (arfaptin 2) /DB_XREF=gi:6912601 /UG=Hs.75139 partner of RAC1 (arfaptin 2) /FL=gb:BC000392.1 gb:U52522.1 gb:NM_012402.1 NM_012402 ADP-ribosylation factor interacting protein 2 ARFIP2 23647 NM_001242854 /// NM_001242855 /// NM_001242856 /// NM_012402 /// XM_005252840 0006928 // cellular component movement // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0030032 // lamellipodium assembly // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0031529 // ruffle organization // traceable author statement 0001726 // ruffle // inferred from mutant phenotype /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005938 // cell cortex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // inferred from physical interaction /// 0030742 // GTP-dependent protein binding // traceable author statement /// 0048365 // Rac GTPase binding // traceable author statement 32.43 163.84 3.02 0.02 0.04 -4.50
200652_at 200652_at NM_003145 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003145.2 /DEF=Homo sapiens signal sequence receptor, beta (translocon-associated protein beta) (SSR2), mRNA. /FEA=mRNA /GEN=SSR2 /PROD=signal sequence receptor, beta precursor /DB_XREF=gi:6552341 /UG=Hs.74564 signal sequence receptor, beta (translocon-associated protein beta) /FL=gb:D37991.1 gb:BC000341.1 gb:NM_003145.2 NM_003145 signal sequence receptor, beta (translocon-associated protein beta) SSR2 6746 NM_003145 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 84.02 742.26 3.02 0.02 0.04 -4.50
208713_at 208713_at BF724216 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF724216 /FEA=EST /DB_XREF=gi:12040125 /DB_XREF=est:bx02c06.y1 /CLONE=bx02c06 /UG=Hs.155218 E1B-55kDa-associated protein 5 /FL=gb:BC002564.1 gb:NM_007040.1 BF724216 heterogeneous nuclear ribonucleoprotein U-like 1 HNRNPUL1 11100 NM_007040 /// NM_144732 /// NM_144733 /// NM_144734 /// XM_005258459 /// XM_005258461 /// XM_005258462 /// XM_005258463 /// XM_005258464 /// XM_005258465 /// XM_005258466 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0009615 // response to virus // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 93.07 324.19 3.02 0.02 0.04 -4.50
221691_x_at 221691_x_at AB042278 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB042278.1 /DEF=Homo sapiens mRNA for nucleophosminB23.2, complete cds. /FEA=mRNA /PROD=nucleophosminB23.2 /DB_XREF=gi:13536990 /FL=gb:AB042278.1 AB042278 nucleophosmin (nucleolar phosphoprotein B23, numatrin) NPM1 4869 NM_001037738 /// NM_002520 /// NM_199185 /// XM_005265920 /// XM_006714869 0006281 // DNA repair // inferred from direct assay /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // traceable author statement /// 0006886 // intracellular protein transport // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // traceable author statement /// 0006950 // response to stress // inferred from mutant phenotype /// 0007098 // centrosome cycle // inferred from mutant phenotype /// 0007098 // centrosome cycle // inferred from sequence or structural similarity /// 0007165 // signal transduction // non-traceable author statement /// 0007569 // cell aging // inferred from mutant phenotype /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0010826 // negative regulation of centrosome duplication // inferred from mutant phenotype /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032071 // regulation of endodeoxyribonuclease activity // inferred from direct assay /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0042255 // ribosome assembly // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // non-traceable author statement /// 0044387 // negative regulation of protein kinase activity by regulation of protein phosphorylation // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay /// 0046599 // regulation of centriole replication // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0060699 // regulation of endoribonuclease activity // inferred from direct assay /// 0060735 // regulation of eIF2 alpha phosphorylation by dsRNA // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031616 // spindle pole centrosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0004860 // protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030957 // Tat protein binding // inferred from direct assay /// 0042393 // histone binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043023 // ribosomal large subunit binding // inferred from direct assay /// 0043024 // ribosomal small subunit binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0051059 // NF-kappaB binding // inferred from direct assay /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity -320.42 1637.11 -3.02 0.02 0.04 -4.50
219777_at 219777_at NM_024711 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024711.1 /DEF=Homo sapiens hypothetical protein FLJ22690 (FLJ22690), mRNA. /FEA=mRNA /GEN=FLJ22690 /PROD=hypothetical protein FLJ22690 /DB_XREF=gi:13376008 /UG=Hs.105468 hypothetical protein FLJ22690 /FL=gb:NM_024711.1 NM_024711 GTPase, IMAP family member 6 GIMAP6 474344 NM_001007224 /// NM_001244071 /// NM_001244072 /// NM_024711 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 96.65 179.95 3.02 0.02 0.04 -4.50
217727_x_at 217727_x_at NM_018206 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018206.1 /DEF=Homo sapiens vacuolar protein sorting 35 (yeast homolog) (VPS35), mRNA. /FEA=mRNA /GEN=VPS35 /PROD=vacuolar protein sorting 35 (yeast homolog) /DB_XREF=gi:8922645 /UG=Hs.264190 vacuolar protein sorting 35 (yeast homolog) /FL=gb:AF186382.1 gb:AL136888.1 gb:BC002414.1 gb:AF191298.2 gb:NM_018206.1 gb:AF175265.1 gb:AF183418.1 NM_018206 vacuolar protein sorting 35 homolog (S. cerevisiae) VPS35 55737 NM_018206 /// XM_005256045 0006810 // transport // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030904 // retromer complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 65.10 389.95 3.02 0.02 0.04 -4.50
213234_at 213234_at AB040900 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB040900.1 /DEF=Homo sapiens mRNA for KIAA1467 protein, partial cds. /FEA=mRNA /GEN=KIAA1467 /PROD=KIAA1467 protein /DB_XREF=gi:7959194 /UG=Hs.6189 KIAA1467 protein AB040900 KIAA1467 KIAA1467 57613 NM_020853 /// XM_005253450 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 42.75 64.03 3.02 0.02 0.04 -4.50
208824_x_at 208824_x_at BC001048 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001048.1 /DEF=Homo sapiens, PCTAIRE protein kinase 1, clone MGC:1330, mRNA, complete cds. /FEA=mRNA /PROD=PCTAIRE protein kinase 1 /DB_XREF=gi:12654444 /UG=Hs.171834 PCTAIRE protein kinase 1 /FL=gb:BC001048.1 BC001048 cyclin-dependent kinase 16 CDK16 5127 NM_001170460 /// NM_006201 /// NM_033018 /// XM_005272614 /// XM_005272615 /// XM_006724534 /// XM_006724535 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006887 // exocytosis // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030252 // growth hormone secretion // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0061178 // regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -42.50 186.43 -3.02 0.02 0.04 -4.50
209124_at 209124_at U70451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U70451.1 /DEF=Human myleoid differentiation primary response protein MyD88 mRNA, complete cds. /FEA=mRNA /PROD=MyD88 /DB_XREF=gi:1763090 /UG=Hs.82116 myeloid differentiation primary response gene (88) /FL=gb:U70451.1 gb:U84408.1 gb:NM_002468.1 U70451 myeloid differentiation primary response 88 MYD88 4615 NM_001172566 /// NM_001172567 /// NM_001172568 /// NM_001172569 /// NM_002468 /// XM_005265172 /// XM_006713170 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002238 // response to molecule of fungal origin // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007254 // JNK cascade // inferred from electronic annotation /// 0008063 // Toll signaling pathway // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032494 // response to peptidoglycan // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032740 // positive regulation of interleukin-17 production // inferred from sequence or structural similarity /// 0032747 // positive regulation of interleukin-23 production // inferred from sequence or structural similarity /// 0032755 // positive regulation of interleukin-6 production // inferred from sequence or structural similarity /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045351 // type I interferon biosynthetic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050671 // positive regulation of lymphocyte proliferation // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0050830 // defense response to Gram-positive bacterium // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005121 // Toll binding // inferred from electronic annotation /// 0005123 // death receptor binding // traceable author statement /// 0005149 // interleukin-1 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0070976 // TIR domain binding // inferred from physical interaction 40.68 329.21 3.02 0.02 0.04 -4.50
203740_at 203740_at NM_005792 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005792.1 /DEF=Homo sapiens M-phase phosphoprotein 6 (MPHOSPH6), mRNA. /FEA=mRNA /GEN=MPHOSPH6 /PROD=M-phase phosphoprotein 6 /DB_XREF=gi:5031918 /UG=Hs.152720 M-phase phosphoprotein 6 /FL=gb:BC005242.1 gb:NM_005792.1 NM_005792 M-phase phosphoprotein 6 MPHOSPH6 10200 NM_005792 0000087 // mitotic M phase // traceable author statement /// 0000460 // maturation of 5.8S rRNA // inferred from mutant phenotype /// 0006364 // rRNA processing // inferred from electronic annotation 0000176 // nuclear exosome (RNase complex) // traceable author statement /// 0000178 // exosome (RNase complex) // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 60.65 224.15 3.02 0.02 0.04 -4.50
202121_s_at 202121_s_at NM_014453 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014453.1 /DEF=Homo sapiens putative breast adenocarcinoma marker (32kD) (BC-2), mRNA. /FEA=mRNA /GEN=BC-2 /PROD=putative breast adenocarcinoma marker (32kD) /DB_XREF=gi:7656921 /UG=Hs.12107 putative breast adenocarcinoma marker (32kD) /FL=gb:AF042384.1 gb:NM_014453.1 NM_014453 charged multivesicular body protein 2A CHMP2A 27243 NM_014453 /// NM_198426 /// XM_005258746 /// XM_005258747 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0045184 // establishment of protein localization // inferred from mutant phenotype /// 0050792 // regulation of viral process // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 1902188 // positive regulation of viral release from host cell // inferred from mutant phenotype 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction -34.90 195.60 -3.02 0.02 0.04 -4.50
200603_at 200603_at AL050038 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050038.1 /DEF=Homo sapiens mRNA; cDNA DKFZp566J0124 (from clone DKFZp566J0124). /FEA=mRNA /DB_XREF=gi:4884279 /UG=Hs.183037 protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) /FL=gb:M18468.1 gb:M33336.1 gb:NM_002734.1 AL050038 protein kinase, cAMP-dependent, regulatory, type I, alpha PRKAR1A 5573 NM_001276289 /// NM_001276290 /// NM_001278433 /// NM_002734 /// NM_212471 /// NM_212472 0001707 // mesoderm formation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007143 // female meiotic division // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045835 // negative regulation of meiosis // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 2000480 // negative regulation of cAMP-dependent protein kinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction 180.37 719.59 3.01 0.02 0.04 -4.50
208149_x_at 208149_x_at NM_030653 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030653.1 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 11 (S.cerevisiae CHL1-like helicase) (DDX11), transcript variant 1, mRNA. /FEA=mRNA /GEN=DDX11 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 11 /DB_XREF=gi:13787196 /FL=gb:NM_030653.1 NM_030653 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 DDX11 1663 NM_001257144 /// NM_001257145 /// NM_004399 /// NM_030653 /// NM_030655 /// NM_152438 /// XM_005253331 /// XM_005253333 /// XM_006719041 /// XM_006719042 /// XM_006719043 /// XM_006719044 /// XM_006719045 /// XM_006719046 /// XM_006719047 /// XM_006719048 /// XM_006719049 /// XM_006719050 /// XM_006719051 /// XM_006719052 /// XM_006719053 /// XR_429031 0000070 // mitotic sister chromatid segregation // traceable author statement /// 0000084 // mitotic S phase // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0000922 // spindle pole // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0030496 // midbody // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 49.45 129.40 3.01 0.02 0.04 -4.50
212919_at 212919_at AV715578 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV715578 /FEA=EST /DB_XREF=gi:10797095 /DB_XREF=est:AV715578 /CLONE=DCBBJG09 /UG=Hs.21056 Homo sapiens cDNA: FLJ21366 fis, clone COL03012, highly similar to AB002445 Homo sapiens mRNA from chromosome 5q21-22 AV715578 decapping mRNA 2 DCP2 167227 NM_001242377 /// NM_152624 /// NR_038352 /// XM_005271914 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0006402 // mRNA catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement /// 0071044 // histone mRNA catabolic process // inferred from mutant phenotype /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // traceable author statement 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016442 // RISC complex // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016896 // exoribonuclease activity, producing 5'-phosphomonoesters // traceable author statement /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050072 // m7G(5')pppN diphosphatase activity // inferred from direct assay 42.77 122.64 3.01 0.02 0.04 -4.50
200811_at 200811_at NM_001280 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001280.1 /DEF=Homo sapiens cold inducible RNA-binding protein (CIRBP), mRNA. /FEA=mRNA /GEN=CIRBP /PROD=cold inducible RNA-binding protein /DB_XREF=gi:4502846 /UG=Hs.119475 cold inducible RNA-binding protein /FL=gb:D78134.1 gb:BC000403.1 gb:BC000901.1 gb:AF021336.1 gb:NM_001280.1 NM_001280 cold inducible RNA binding protein CIRBP 1153 NM_001280 /// NR_023312 /// NR_023313 /// XM_006722636 /// XM_006722637 /// XM_006722638 /// XR_430127 /// XR_430128 0006950 // response to stress // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009411 // response to UV // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0034063 // stress granule assembly // inferred from sequence or structural similarity /// 0045727 // positive regulation of translation // inferred from direct assay /// 0048255 // mRNA stabilization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030371 // translation repressor activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070181 // small ribosomal subunit rRNA binding // inferred from direct assay 98.67 369.31 3.01 0.02 0.04 -4.50
221876_at 221876_at AU151157 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU151157 /FEA=EST /DB_XREF=gi:11012678 /DB_XREF=est:AU151157 /CLONE=NT2RP2004523 /UG=Hs.14217 hypothetical protein DKFZp762P2111 AU151157 zinc finger family member 783 ZNF783 100289678 NM_001195220 /// XM_005249929 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 28.12 29.69 3.01 0.02 0.04 -4.50
201453_x_at 201453_x_at NM_005614 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005614.1 /DEF=Homo sapiens Ras homolog enriched in brain 2 (RHEB2), mRNA. /FEA=mRNA /GEN=RHEB2 /PROD=Ras homolog enriched in brain 2 /DB_XREF=gi:5032040 /UG=Hs.279903 Ras homolog enriched in brain 2 /FL=gb:D78132.1 gb:NM_005614.1 gb:AF148645.1 NM_005614 Ras homolog enriched in brain RHEB 6009 NM_005614 /// XM_006716081 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0032008 // positive regulation of TOR signaling // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -148.07 856.94 -3.01 0.02 0.04 -4.50
212155_at 212155_at AA085748 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA085748 /FEA=EST /DB_XREF=gi:1629231 /DB_XREF=est:zk71f11.s1 /CLONE=IMAGE:488301 /UG=Hs.144904 nuclear receptor co-repressor 1 AA085748 ring finger protein 187 RNF187 149603 NM_001010858 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 63.65 173.82 3.01 0.02 0.04 -4.50
221515_s_at 221515_s_at BC001214 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001214.1 /DEF=Homo sapiens, CGI-68 protein, clone MGC:682, mRNA, complete cds. /FEA=mRNA /PROD=CGI-68 protein /DB_XREF=gi:12654744 /UG=Hs.8054 CGI-68 protein /FL=gb:BC001214.1 gb:AF151826.1 gb:NM_016015.1 BC001214 leucine carboxyl methyltransferase 1 LCMT1 51451 NM_001032391 /// NM_016309 /// XM_005255354 /// XM_006721050 0006464 // cellular protein modification process // traceable author statement /// 0006479 // protein methylation // inferred from mutant phenotype /// 0006481 // C-terminal protein methylation // inferred from direct assay /// 0031333 // negative regulation of protein complex assembly // inferred from mutant phenotype /// 0032259 // methylation // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from mutant phenotype /// 0090266 // regulation of mitotic cell cycle spindle assembly checkpoint // inferred from mutant phenotype 0003880 // protein C-terminal carboxyl O-methyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation 38.32 106.49 3.01 0.02 0.04 -4.50
201722_s_at 201722_s_at AV692127 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV692127 /FEA=EST /DB_XREF=gi:10293990 /DB_XREF=est:AV692127 /CLONE=GKCAOB04 /UG=Hs.80120 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) /FL=gb:U41514.1 gb:NM_020474.2 AV692127 polypeptide N-acetylgalactosaminyltransferase 1 GALNT1 2589 NM_020474 /// XM_005258239 0006486 // protein glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0016266 // O-glycan processing // traceable author statement /// 0018242 // protein O-linked glycosylation via serine // inferred from direct assay /// 0018243 // protein O-linked glycosylation via threonine // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 101.28 878.94 3.01 0.02 0.04 -4.50
218192_at 218192_at NM_016291 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016291.1 /DEF=Homo sapiens mammalian inositol hexakisphosphate kinase 2 (IP6K2), mRNA. /FEA=mRNA /GEN=IP6K2 /PROD=mammalian inositol hexakisphosphate kinase 2 /DB_XREF=gi:7705552 /UG=Hs.323432 mammalian inositol hexakisphosphate kinase 2 /FL=gb:AF177145.1 gb:NM_016291.1 NM_016291 inositol hexakisphosphate kinase 2 IP6K2 51447 NM_001005909 /// NM_001005910 /// NM_001005911 /// NM_001005912 /// NM_001005913 /// NM_001146178 /// NM_001146179 /// NM_001190316 /// NM_001190317 /// NM_016291 /// NR_027437 /// NR_027438 /// XM_006713199 /// XM_006713200 /// XM_006713201 /// XM_006713202 0006817 // phosphate ion transport // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from direct assay /// 0060337 // type I interferon signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000832 // inositol hexakisphosphate 5-kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol-1,4,5-trisphosphate 3-kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0052723 // inositol hexakisphosphate 1-kinase activity // inferred from electronic annotation /// 0052724 // inositol hexakisphosphate 3-kinase activity // inferred from electronic annotation -38.37 134.11 -3.01 0.02 0.04 -4.50
200941_at 200941_at AK026575 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026575.1 /DEF=Homo sapiens cDNA: FLJ22922 fis, clone KAT06722. /FEA=mRNA /DB_XREF=gi:10439459 /UG=Hs.250899 heat shock factor binding protein 1 /FL=gb:AF068754.1 gb:NM_001537.1 AK026575 heat shock factor binding protein 1 HSBP1 3281 NM_001537 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006936 // muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003714 // transcription corepressor activity // traceable author statement 66.60 213.10 3.01 0.02 0.04 -4.50
218498_s_at 218498_s_at NM_014584 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014584.1 /DEF=Homo sapiens ERO1 (S. cerevisiae)-like (ERO1L), mRNA. /FEA=mRNA /GEN=ERO1L /PROD=ERO1 (S. cerevisiae)-like /DB_XREF=gi:7657068 /UG=Hs.25740 ERO1 (S. cerevisiae)-like /FL=gb:AF081886.1 gb:NM_014584.1 NM_014584 ERO1-like (S. cerevisiae) ERO1L 30001 NM_014584 0006457 // protein folding // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0009266 // response to temperature stimulus // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from direct assay /// 0051209 // release of sequestered calcium ion into cytosol // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // traceable author statement 0003756 // protein disulfide isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016671 // oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation -50.02 69.21 -3.01 0.02 0.04 -4.50
219148_at 219148_at NM_018492 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018492.1 /DEF=Homo sapiens PDZ-binding kinase; T-cell originated protein kinase (TOPK), mRNA. /FEA=mRNA /GEN=TOPK /PROD=PDZ-binding kinase /DB_XREF=gi:8923876 /UG=Hs.104741 PDZ-binding kinase; T-cell originated protein kinase /FL=gb:AF189722.1 gb:AF237709.1 gb:NM_018492.1 gb:AB027249.1 gb:AB027250.1 NM_018492 PDZ binding kinase PBK 55872 NM_001278945 /// NM_018492 /// XM_006716368 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // non-traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 44.75 153.95 3.01 0.02 0.04 -4.50
219253_at 219253_at NM_024121 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024121.1 /DEF=Homo sapiens hypothetical protein FLJ20979 (FLJ20979), mRNA. /FEA=mRNA /GEN=FLJ20979 /PROD=hypothetical protein FLJ20979 /DB_XREF=gi:13129145 /UG=Hs.44680 hypothetical protein FLJ20979 /FL=gb:NM_024121.1 NM_024121 transmembrane protein 185B TMEM185B 79134 NM_024121 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 33.97 67.16 3.00 0.02 0.04 -4.50
218252_at 218252_at NM_018204 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018204.1 /DEF=Homo sapiens cytoskeleton associated protein 2 (CKAP2), mRNA. /FEA=mRNA /GEN=CKAP2 /PROD=cytoskeleton associated protein 2 /DB_XREF=gi:8922641 /UG=Hs.24641 cytoskeleton associated protein 2 /FL=gb:AL136848.1 gb:NM_018204.1 NM_018204 cytoskeleton associated protein 2 CKAP2 26586 NM_001098525 /// NM_001286686 /// NM_001286687 /// NM_018204 /// XM_005266343 /// XM_005266344 0000281 // mitotic cytokinesis // inferred from genetic interaction /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay 100.27 156.14 3.00 0.02 0.04 -4.50
205401_at 205401_at NM_003659 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003659.1 /DEF=Homo sapiens alkylglycerone phosphate synthase (AGPS), mRNA. /FEA=mRNA /GEN=AGPS /PROD=alkylglycerone phosphate synthase precursor /DB_XREF=gi:4501992 /UG=Hs.22580 alkylglycerone phosphate synthase /FL=gb:NM_003659.1 NM_003659 alkylglycerone phosphate synthase AGPS 8540 NM_003659 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from direct assay /// 0008611 // ether lipid biosynthetic process // inferred from electronic annotation /// 0008611 // ether lipid biosynthetic process // inferred from sequence or structural similarity /// 0008611 // ether lipid biosynthetic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0008609 // alkylglycerone-phosphate synthase activity // inferred from direct assay /// 0008762 // UDP-N-acetylmuramate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016614 // oxidoreductase activity, acting on CH-OH group of donors // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation /// 0071949 // FAD binding // inferred from sequence or structural similarity -41.58 210.26 -2.99 0.02 0.04 -4.50
212330_at 212330_at R60866 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:R60866 /FEA=EST /DB_XREF=gi:831561 /DB_XREF=est:yh08a11.s1 /CLONE=IMAGE:42383 /UG=Hs.79353 hypothetical protein FLJ13576 R60866 transcription factor Dp-1 TFDP1 7027 NM_007111 /// NR_026580 /// XM_005268326 /// XM_005268327 /// XM_005268328 /// XM_005268330 /// XM_005268331 /// XM_006719977 /// XM_006719978 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction 75.02 336.39 2.99 0.02 0.04 -4.50
215017_s_at 215017_s_at AW270932 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW270932 /FEA=EST /DB_XREF=gi:6657962 /DB_XREF=est:xs06c12.x1 /CLONE=IMAGE:2768854 /UG=Hs.239681 hypothetical protein FLJ20275 AW270932 formin binding protein 1-like FNBP1L 54874 NM_001024948 /// NM_001164473 /// NM_017737 /// XM_006710707 0006897 // endocytosis // inferred from electronic annotation /// 0006900 // membrane budding // inferred from direct assay /// 0006914 // autophagy // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0010324 // membrane invagination // inferred from direct assay /// 0016050 // vesicle organization // inferred from direct assay /// 0030050 // vesicle transport along actin filament // inferred from direct assay /// 0051491 // positive regulation of filopodium assembly // inferred from direct assay /// 0072583 // clathrin-mediated endocytosis // inferred from direct assay /// 0097320 // membrane tubulation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation 49.65 179.35 2.99 0.02 0.04 -4.50
212085_at 212085_at AA916851 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA916851 /FEA=EST /DB_XREF=gi:3056243 /DB_XREF=est:on10g02.s1 /CLONE=IMAGE:1556306 /UG=Hs.164280 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 AA916851 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 SLC25A6 293 NM_001636 0006112 // energy reserve metabolic process // traceable author statement /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0015866 // ADP transport // non-traceable author statement /// 0015867 // ATP transport // non-traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046732 // active induction of host immune response by virus // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005744 // mitochondrial inner membrane presequence translocase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005471 // ATP:ADP antiporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction -334.28 1560.74 -2.99 0.02 0.04 -4.50
201559_s_at 201559_s_at AF109196 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF109196.1 /DEF=Homo sapiens intracellular chloride channel p64H1 mRNA, complete cds. /FEA=mRNA /PROD=intracellular chloride channel p64H1 /DB_XREF=gi:4588523 /UG=Hs.25035 chloride intracellular channel 4 /FL=gb:AF109196.1 gb:AF097330.1 gb:AL117424.1 gb:NM_013943.1 AF109196 chloride intracellular channel 4 CLIC4 25932 NM_013943 0001525 // angiogenesis // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // non-traceable author statement /// 0007035 // vacuolar acidification // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0030154 // cell differentiation // traceable author statement /// 0030216 // keratinocyte differentiation // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0034765 // regulation of ion transmembrane transport // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // non-traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // non-traceable author statement /// 0061299 // retina vasculature morphogenesis in camera-type eye // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from mutant phenotype /// 1902476 // chloride transmembrane transport // inferred from electronic annotation /// 1902476 // chloride transmembrane transport // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0005911 // cell-cell junction // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0015629 // actin cytoskeleton // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -167.92 567.26 -2.99 0.02 0.04 -4.50
207029_at 207029_at NM_000899 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000899.1 /DEF=Homo sapiens KIT ligand (KITLG), mRNA. /FEA=mRNA /GEN=KITLG /PROD=mast cell growth factor, isoform b, precursor /DB_XREF=gi:4505174 /UG=Hs.1048 KIT ligand /FL=gb:M59964.1 gb:NM_000899.1 NM_000899 KIT ligand KITLG 4254 NM_000899 /// NM_003994 0001755 // neural crest cell migration // inferred from electronic annotation /// 0002763 // positive regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008584 // male gonad development // inferred from expression pattern /// 0030097 // hemopoiesis // non-traceable author statement /// 0033026 // negative regulation of mast cell apoptotic process // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from direct assay /// 0035234 // ectopic germ cell programmed cell death // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045636 // positive regulation of melanocyte differentiation // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0070668 // positive regulation of mast cell proliferation // inferred from electronic annotation /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // non-traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005173 // stem cell factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation -32.77 51.64 -2.99 0.02 0.04 -4.50
203688_at 203688_at NM_000297 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000297.1 /DEF=Homo sapiens polycystic kidney disease 2 (autosomal dominant) (PKD2), mRNA. /FEA=mRNA /GEN=PKD2 /PROD=polycystin 2 /DB_XREF=gi:4505834 /UG=Hs.82001 polycystic kidney disease 2 (autosomal dominant) /FL=gb:U50928.1 gb:NM_000297.1 NM_000297 polycystic kidney disease 2 (autosomal dominant) PKD2 5311 NM_000297 /// XR_244632 0001658 // branching involved in ureteric bud morphogenesis // inferred from expression pattern /// 0001822 // kidney development // inferred from electronic annotation /// 0001889 // liver development // inferred from expression pattern /// 0001892 // embryonic placenta development // inferred from sequence or structural similarity /// 0001947 // heart looping // inferred from mutant phenotype /// 0003127 // detection of nodal flow // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from sequence or structural similarity /// 0007368 // determination of left/right symmetry // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // non-traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0021510 // spinal cord development // inferred from expression pattern /// 0021915 // neural tube development // inferred from expression pattern /// 0030814 // regulation of cAMP metabolic process // inferred from sequence or structural similarity /// 0031587 // positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from mutant phenotype /// 0031659 // positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0034614 // cellular response to reactive oxygen species // non-traceable author statement /// 0035502 // metanephric part of ureteric bud development // inferred from expression pattern /// 0035725 // sodium ion transmembrane transport // inferred from direct assay /// 0035904 // aorta development // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0050982 // detection of mechanical stimulus // not recorded /// 0050982 // detection of mechanical stimulus // inferred from sequence or structural similarity /// 0051209 // release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051209 // release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051298 // centrosome duplication // non-traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060674 // placenta blood vessel development // inferred from sequence or structural similarity /// 0061333 // renal tubule morphogenesis // inferred from sequence or structural similarity /// 0061441 // renal artery morphogenesis // inferred from expression pattern /// 0070588 // calcium ion transmembrane transport // inferred from direct assay /// 0071158 // positive regulation of cell cycle arrest // inferred from mutant phenotype /// 0071464 // cellular response to hydrostatic pressure // inferred from direct assay /// 0071470 // cellular response to osmotic stress // inferred from direct assay /// 0071498 // cellular response to fluid shear stress // inferred from mutant phenotype /// 0071805 // potassium ion transmembrane transport // inferred from electronic annotation /// 0071910 // determination of liver left/right asymmetry // inferred from mutant phenotype /// 0072001 // renal system development // inferred from electronic annotation /// 0072075 // metanephric mesenchyme development // inferred from expression pattern /// 0072164 // mesonephric tubule development // inferred from expression pattern /// 0072177 // mesonephric duct development // inferred from expression pattern /// 0072208 // metanephric smooth muscle tissue development // inferred from expression pattern /// 0072214 // metanephric cortex development // inferred from expression pattern /// 0072218 // metanephric ascending thin limb development // inferred from expression pattern /// 0072219 // metanephric cortical collecting duct development // inferred from expression pattern /// 0072235 // metanephric distal tubule development // inferred from expression pattern /// 0072284 // metanephric S-shaped body morphogenesis // inferred from expression pattern /// 0090279 // regulation of calcium ion import // inferred from direct assay /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from mutant phenotype 0002133 // polycystin complex // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0005929 // cilium // inferred from sequence or structural similarity /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031512 // motile primary cilium // inferred from sequence or structural similarity /// 0031513 // nonmotile primary cilium // inferred from sequence or structural similarity /// 0031941 // filamentous actin // inferred from direct assay /// 0036064 // ciliary basal body // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0045180 // basal cortex // inferred from direct assay /// 0060170 // ciliary membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071458 // integral component of cytoplasmic side of endoplasmic reticulum membrane // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from direct assay /// 0015267 // channel activity // inferred from electronic annotation /// 0022843 // voltage-gated cation channel activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042805 // actinin binding // inferred from direct assay /// 0043398 // HLH domain binding // inferred from physical interaction /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048763 // calcium-induced calcium release activity // inferred from direct assay /// 0051117 // ATPase binding // inferred from sequence or structural similarity /// 0051219 // phosphoprotein binding // inferred from physical interaction /// 0051371 // muscle alpha-actinin binding // inferred from electronic annotation /// 0051393 // alpha-actinin binding // inferred from electronic annotation 31.15 80.75 2.99 0.02 0.04 -4.50
32069_at 32069_at AB014515 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB014515:Homo sapiens mRNA for KIAA0615 protein, complete cds /cds=(237,2927) /gb=AB014515 /gi=3327043 /ug=Hs.155972 /len=3319 AB014515 NEDD4 binding protein 1 N4BP1 9683 NM_153029 /// XM_005256262 /// XM_006721351 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0034644 // cellular response to UV // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction -27.52 66.11 -2.99 0.02 0.04 -4.50
208916_at 208916_at AF105230 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF105230.1 /DEF=Homo sapiens neutral amino acid transporter (SLC1A5) mRNA, complete cds. /FEA=mRNA /GEN=SLC1A5 /PROD=neutral amino acid transporter /DB_XREF=gi:4191561 /UG=Hs.183556 solute carrier family 1 (neutral amino acid transporter), member 5 /FL=gb:BC000062.1 gb:U53347.1 gb:AF102826.1 gb:AF105230.1 gb:AF105423.1 gb:NM_005628.1 AF105230 solute carrier family 1 (neutral amino acid transporter), member 5 SLC1A5 6510 NM_001145144 /// NM_001145145 /// NM_005628 /// XM_005259167 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006860 // extracellular amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // traceable author statement /// 0006868 // glutamine transport // traceable author statement /// 0009615 // response to virus // inferred from electronic annotation /// 0015804 // neutral amino acid transport // traceable author statement /// 0015825 // L-serine transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015175 // neutral amino acid transmembrane transporter activity // traceable author statement /// 0015186 // L-glutamine transmembrane transporter activity // traceable author statement /// 0015194 // L-serine transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation -85.15 111.67 -2.98 0.02 0.04 -4.50
203893_at 203893_at NM_016283 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016283.1 /DEF=Homo sapiens adrenal gland protein AD-004 (LOC51578), mRNA. /FEA=mRNA /GEN=LOC51578 /PROD=adrenal gland protein AD-004 /DB_XREF=gi:7706211 /UG=Hs.279586 adrenal gland protein AD-004 /FL=gb:AF151895.1 gb:AF110777.1 gb:NM_016283.1 NM_016283 adenylate kinase 6 AK6 102157402 NM_001015891 /// NM_016283 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred by curator /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046939 // nucleotide phosphorylation // inferred from direct assay /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay /// 0060760 // positive regulation of response to cytokine stimulus // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred by curator 0000125 // PCAF complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030914 // STAGA complex // inferred from direct assay /// 0033276 // transcription factor TFTC complex // inferred from direct assay /// 0070761 // pre-snoRNP complex // inferred from direct assay /// 0071339 // MLL1 complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0004017 // adenylate kinase activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0033613 // activating transcription factor binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // inferred from physical interaction -69.60 159.35 -2.98 0.02 0.04 -4.50
46323_at 46323_at AL120741 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL120741:DKFZp762K231_r1 Homo sapiens cDNA, 5 end /clone=DKFZp762K231 /clone_end=5' /gb=AL120741 /gi=5926641 /ug=Hs.8859 /len=707 AL120741 calcium activated nucleotidase 1 CANT1 124583 NM_001159772 /// NM_001159773 /// NM_138793 /// XM_005257020 /// XM_005257021 /// XM_005257022 /// XM_006721682 /// XM_006721683 /// XR_243633 0007165 // signal transduction // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0030166 // proteoglycan biosynthetic process // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016462 // pyrophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0045134 // uridine-diphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 56.50 220.55 2.98 0.02 0.04 -4.50
200045_at 200045_at NM_001090 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001090.1 /DEF=Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 1 (ABCF1), mRNA. /FEA=mRNA /GEN=ABCF1 /PROD=ATP-binding cassette, sub-family F, member 1 /DB_XREF=gi:10947134 /UG=Hs.9573 ATP-binding cassette, sub-family F (GCN20), member 1 /FL=gb:NM_001090.1 gb:AF027302.1 NM_001090 ATP-binding cassette, sub-family F (GCN20), member 1 ABCF1 23 NM_001025091 /// NM_001090 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred from mutant phenotype /// 0006954 // inflammatory response // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042788 // polysomal ribosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0008494 // translation activator activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -111.70 389.65 -2.98 0.02 0.04 -4.50
219158_s_at 219158_s_at NM_025085 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025085.1 /DEF=Homo sapiens hypothetical protein FLJ13340 (FLJ13340), mRNA. /FEA=mRNA /GEN=FLJ13340 /PROD=hypothetical protein FLJ13340 /DB_XREF=gi:13376639 /UG=Hs.125034 hypothetical protein FLJ13340 /FL=gb:AF327722.1 gb:NM_025085.1 NM_025085 N(alpha)-acetyltransferase 15, NatA auxiliary subunit NAA15 80155 NM_057175 /// XM_005263236 0001525 // angiogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006474 // N-terminal protein amino acid acetylation // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0050821 // protein stabilization // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031415 // NatA complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from direct assay /// 0043022 // ribosome binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 58.82 124.49 2.98 0.02 0.04 -4.50
212465_at 212465_at AA524500 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA524500 /FEA=EST /DB_XREF=gi:2265428 /DB_XREF=est:ng45f12.s1 /CLONE=IMAGE:937775 /UG=Hs.321766 Homo sapiens cDNA: FLJ23027 fis, clone LNG01826 AA524500 SET domain containing 3 SETD3 84193 NM_032233 /// NM_199123 /// XM_005268126 /// XM_005268127 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0010452 // histone H3-K36 methylation // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018022 // peptidyl-lysine methylation // inferred from electronic annotation /// 0018023 // peptidyl-lysine trimethylation // inferred from sequence or structural similarity /// 0018026 // peptidyl-lysine monomethylation // inferred from sequence or structural similarity /// 0018027 // peptidyl-lysine dimethylation // inferred from sequence or structural similarity /// 0032259 // methylation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // inferred from electronic annotation /// 0051568 // histone H3-K4 methylation // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0001102 // RNA polymerase II activating transcription factor binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046975 // histone methyltransferase activity (H3-K36 specific) // inferred from sequence or structural similarity 38.75 171.47 2.98 0.02 0.04 -4.50
211763_s_at 211763_s_at BC005979 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005979.1 /DEF=Homo sapiens, ubiquitin-conjugating enzyme E2B (RAD6 homolog), clone MGC:14670, mRNA, complete cds. /FEA=mRNA /PROD=ubiquitin-conjugating enzyme E2B (RAD6 homolog) /DB_XREF=gi:13543659 /FL=gb:BC005979.1 BC005979 ubiquitin-conjugating enzyme E2B UBE2B 7320 NM_003337 0000209 // protein polyubiquitination // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006281 // DNA repair // inferred from genetic interaction /// 0006301 // postreplication repair // inferred from direct assay /// 0006301 // postreplication repair // non-traceable author statement /// 0006344 // maintenance of chromatin silencing // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006513 // protein monoubiquitination // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007283 // spermatogenesis // traceable author statement /// 0007288 // sperm axoneme assembly // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009411 // response to UV // inferred from genetic interaction /// 0010845 // positive regulation of reciprocal meiotic recombination // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031056 // regulation of histone modification // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0033128 // negative regulation of histone phosphorylation // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // inferred from mutant phenotype /// 0042493 // response to drug // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043951 // negative regulation of cAMP-mediated signaling // inferred from direct assay /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0051026 // chiasma assembly // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0070076 // histone lysine demethylation // inferred from electronic annotation /// 0070193 // synaptonemal complex organization // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0000785 // chromatin // inferred from sequence or structural similarity /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0001741 // XY body // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005657 // replication fork // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033503 // HULC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -54.28 215.11 -2.98 0.02 0.04 -4.50
212276_at 212276_at D80010 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D80010.1 /DEF=Human mRNA for KIAA0188 gene, partial cds. /FEA=mRNA /GEN=KIAA0188 /DB_XREF=gi:1136435 /UG=Hs.81412 lipin 1 D80010 lipin 1 LPIN1 23175 NM_001261427 /// NM_001261428 /// NM_001261429 /// NM_145693 /// XM_006711869 /// XM_006711870 /// XM_006711871 /// XM_006711872 /// XM_006711873 /// XM_006711874 /// XM_006711875 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000266 // mitochondrial fission // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006642 // triglyceride mobilization // inferred from sequence or structural similarity /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006646 // phosphatidylethanolamine biosynthetic process // traceable author statement /// 0006656 // phosphatidylcholine biosynthetic process // traceable author statement /// 0009062 // fatty acid catabolic process // inferred from sequence or structural similarity /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031529 // ruffle organization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045598 // regulation of fat cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005634 // nucleus // inferred from sequence or structural similarity /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from sequence or structural similarity 0001085 // RNA polymerase II transcription factor binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042975 // peroxisome proliferator activated receptor binding // inferred from electronic annotation 43.38 155.86 2.98 0.02 0.04 -4.50
212739_s_at 212739_s_at AL523860 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523860 /FEA=EST /DB_XREF=gi:12787353 /DB_XREF=est:AL523860 /CLONE=CS0DC003YM19 (5 prime) /UG=Hs.9235 non-metastatic cells 4, protein expressed in AL523860 NME/NM23 nucleoside diphosphate kinase 4 NME4 4833 NM_001286433 /// NM_001286435 /// NM_001286436 /// NM_001286438 /// NM_001286439 /// NM_001286440 /// NM_005009 0006165 // nucleoside diphosphate phosphorylation // inferred from electronic annotation /// 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // traceable author statement /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005739 // mitochondrion // traceable author statement /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 53.57 321.14 2.98 0.02 0.04 -4.50
221963_x_at 221963_x_at BE999967 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE999967 /FEA=EST /DB_XREF=gi:10700243 /DB_XREF=est:7h15a06.x1 /CLONE=IMAGE:3316018 /UG=Hs.87409 thrombospondin 1 BE999967 zinc finger protein 587B ZNF587B 100293516 NM_001204818 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 33.58 41.86 2.98 0.02 0.04 -4.50
201015_s_at 201015_s_at NM_021991 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021991.1 /DEF=Homo sapiens junction plakoglobin (JUP), transcript variant 2, mRNA. /FEA=mRNA /GEN=JUP /PROD=junction plakoglobin, isoform 1 /DB_XREF=gi:12056467 /UG=Hs.2340 junction plakoglobin /FL=gb:NM_021991.1 gb:BC000441.1 NM_021991 junction plakoglobin JUP 3728 NM_002230 /// NM_021991 /// XM_005257313 /// XM_006721871 /// XM_006721872 /// XM_006721873 /// XM_006721874 /// XM_006721875 /// XM_006721876 /// XM_006721877 /// XM_006721878 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000902 // cell morphogenesis // not recorded /// 0002159 // desmosome assembly // inferred from direct assay /// 0002159 // desmosome assembly // inferred from mutant phenotype /// 0003136 // negative regulation of heart induction by canonical Wnt signaling pathway // not recorded /// 0003181 // atrioventricular valve morphogenesis // not recorded /// 0003308 // negative regulation of Wnt signaling pathway involved in heart development // not recorded /// 0007016 // cytoskeletal anchoring at plasma membrane // not recorded /// 0007016 // cytoskeletal anchoring at plasma membrane // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0007398 // ectoderm development // not recorded /// 0007399 // nervous system development // not recorded /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016337 // single organismal cell-cell adhesion // inferred from direct assay /// 0016337 // single organismal cell-cell adhesion // inferred from mutant phenotype /// 0016477 // cell migration // inferred from mutant phenotype /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042307 // positive regulation of protein import into nucleus // inferred from direct assay /// 0043588 // skin development // not recorded /// 0045216 // cell-cell junction organization // traceable author statement /// 0048599 // oocyte development // not recorded /// 0050982 // detection of mechanical stimulus // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0071603 // endothelial cell-cell adhesion // inferred from sequence or structural similarity /// 0071681 // cellular response to indole-3-methanol // inferred from direct assay /// 0086005 // ventricular cardiac muscle cell action potential // inferred from mutant phenotype /// 0086069 // bundle of His cell to Purkinje myocyte communication // inferred from mutant phenotype /// 0086091 // regulation of heart rate by cardiac conduction // inferred from mutant phenotype /// 0090002 // establishment of protein localization to plasma membrane // inferred from mutant phenotype /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred by curator 0005634 // nucleus // inferred from mutant phenotype /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005915 // zonula adherens // not recorded /// 0005915 // zonula adherens // inferred from sequence or structural similarity /// 0005916 // fascia adherens // not recorded /// 0009898 // cytoplasmic side of plasma membrane // not recorded /// 0009898 // cytoplasmic side of plasma membrane // inferred from sequence or structural similarity /// 0014704 // intercalated disc // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016327 // apicolateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016342 // catenin complex // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from sequence or structural similarity /// 0030057 // desmosome // inferred from direct assay /// 0032993 // protein-DNA complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071665 // gamma-catenin-TCF7L2 complex // inferred from direct assay 0003713 // transcription coactivator activity // inferred from direct assay /// 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // non-traceable author statement /// 0005199 // structural constituent of cell wall // inferred by curator /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0045294 // alpha-catenin binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from physical interaction -65.25 288.65 -2.97 0.02 0.04 -4.50
212463_at 212463_at BE379006 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE379006 /FEA=EST /DB_XREF=gi:9324371 /DB_XREF=est:601236272F1 /CLONE=IMAGE:3608680 /UG=Hs.99766 Homo sapiens mRNA; cDNA DKFZp564J0323 (from clone DKFZp564J0323) BE379006 CD59 molecule, complement regulatory protein CD59 966 NM_000611 /// NM_001127223 /// NM_001127225 /// NM_001127226 /// NM_001127227 /// NM_203329 /// NM_203330 /// NM_203331 0001775 // cell activation // not recorded /// 0001971 // negative regulation of activation of membrane attack complex // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030449 // regulation of complement activation // traceable author statement /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0031362 // anchored component of external side of plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043218 // compact myelin // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001848 // complement binding // not recorded /// 0005515 // protein binding // inferred from physical interaction 227.73 319.01 2.97 0.02 0.04 -4.50
33579_i_at 33579_i_at Z97630 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. Z97630:Human DNA sequence from clone 466N1 on chromosome 22q12-13 Contains H1F0(H1 histone family, member 0) gene, 2-amino-3-ketobutyrate -CoA ligase( nuclear gene encoding mitochondrial protein), GALR3 (galanin receptor) gene, ESTs, GSSs and CpG islands /cds=(25,1131) /gb=Z97630 /gi=4582128 /ug=Hs.158353 /len=1157 Z97630 galanin receptor 3 GALR3 8484 NM_003614 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007611 // learning or memory // traceable author statement /// 0007631 // feeding behavior // traceable author statement /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004966 // galanin receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay -26.50 50.98 -2.97 0.02 0.04 -4.50
203708_at 203708_at NM_002600 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002600.1 /DEF=Homo sapiens phosphodiesterase 4B, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E4) (PDE4B), mRNA. /FEA=mRNA /GEN=PDE4B /PROD=phosphodiesterase 4B, cAMP-specific (dunce(Drosophila)-homolog phosphodiesterase E4) /DB_XREF=gi:4505662 /UG=Hs.188 phosphodiesterase 4B, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E4) /FL=gb:M97515.1 gb:L20971.1 gb:NM_002600.1 NM_002600 phosphodiesterase 4B, cAMP-specific PDE4B 5142 NM_001037339 /// NM_001037340 /// NM_001037341 /// NM_001297440 /// NM_001297441 /// NM_001297442 /// NM_002600 /// XM_005270923 /// XM_005270924 /// XM_005270925 /// XM_005270926 /// XM_006710680 0001780 // neutrophil homeostasis // inferred from sequence or structural similarity /// 0006198 // cAMP catabolic process // inferred from direct assay /// 0006198 // cAMP catabolic process // inferred from electronic annotation /// 0006198 // cAMP catabolic process // inferred from genetic interaction /// 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0032729 // positive regulation of interferon-gamma production // inferred from mutant phenotype /// 0032743 // positive regulation of interleukin-2 production // inferred from mutant phenotype /// 0035690 // cellular response to drug // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // inferred from mutant phenotype /// 0050900 // leukocyte migration // inferred from sequence or structural similarity /// 0071222 // cellular response to lipopolysaccharide // inferred from sequence or structural similarity /// 0071872 // cellular response to epinephrine stimulus // inferred from sequence or structural similarity /// 0086004 // regulation of cardiac muscle cell contraction // inferred from sequence or structural similarity /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 1901898 // negative regulation of relaxation of cardiac muscle // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005891 // voltage-gated calcium channel complex // inferred from sequence or structural similarity /// 0030018 // Z disc // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0071944 // cell periphery // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from sequence or structural similarity /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from genetic interaction /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from genetic interaction /// 0044325 // ion channel binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -113.20 482.98 -2.97 0.02 0.04 -4.50
212181_s_at 212181_s_at AF191654 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF191654.2 /DEF=Homo sapiens diphosphoinositol polyphosphate phosphohydrolase type 2 (NUDT4) gene, partial sequence. /FEA=mRNA /DB_XREF=gi:7741064 /UG=Hs.92381 nudix (nucleoside diphosphate linked moiety X)-type motif 4 AF191654 nudix (nucleoside diphosphate linked moiety X)-type motif 4 /// nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 /// nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 2 NUDT4 /// NUDT4P1 /// NUDT4P2 11163 /// 170688 /// 440672 NM_019094 /// NM_199040 /// NR_002212 /// NR_104005 /// XM_005268595 0008152 // metabolic process // inferred from electronic annotation /// 0009187 // cyclic nucleotide metabolic process // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement /// 0019935 // cyclic-nucleotide-mediated signaling // traceable author statement /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046831 // regulation of RNA export from nucleus // traceable author statement /// 0046907 // intracellular transport // traceable author statement 0005622 // intracellular // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030515 // snoRNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050072 // m7G(5')pppN diphosphatase activity // inferred from sequence or structural similarity /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // traceable author statement /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation 272.53 733.04 2.97 0.02 0.04 -4.50
209834_at 209834_at AB017915 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB017915.1 /DEF=Homo sapiens mRNA for chondroitin 6-sulfotransferase, complete cds. /FEA=mRNA /PROD=chondroitin 6-sulfotransferase /DB_XREF=gi:4115403 /UG=Hs.158304 carbohydrate (chondroitin 6keratan) sulfotransferase 3 /FL=gb:AB017915.1 AB017915 carbohydrate (chondroitin 6) sulfotransferase 3 CHST3 9469 NM_004273 /// XM_006718075 0005975 // carbohydrate metabolic process // traceable author statement /// 0006790 // sulfur compound metabolic process // inferred from direct assay /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // inferred from direct assay /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // traceable author statement /// 0008459 // chondroitin 6-sulfotransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0050698 // proteoglycan sulfotransferase activity // inferred from electronic annotation 35.83 39.44 2.97 0.02 0.04 -4.50
219520_s_at 219520_s_at NM_018458 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018458.1 /DEF=Homo sapiens uncharacterized bone marrow protein BM042 (BM042), mRNA. /FEA=mRNA /GEN=BM042 /PROD=uncharacterized bone marrow protein BM042 /DB_XREF=gi:8922101 /UG=Hs.324136 uncharacterized bone marrow protein BM042 /FL=gb:AF217518.1 gb:NM_018458.1 NM_018458 WWC family member 3 WWC3 55841 NM_015691 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0035331 // negative regulation of hippo signaling // inferred from direct assay /// 0046621 // negative regulation of organ growth // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from direct assay -83.25 216.53 -2.97 0.02 0.04 -4.50
220081_x_at 220081_x_at NM_016371 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016371.1 /DEF=Homo sapiens hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. /FEA=mRNA /GEN=HSD17B7 /PROD=hydroxysteroid (17-beta) dehydrogenase 7 /DB_XREF=gi:7705420 /UG=Hs.187579 hydroxysteroid (17-beta) dehydrogenase 7 /FL=gb:AF098786.2 gb:NM_016371.1 NM_016371 hydroxysteroid (17-beta) dehydrogenase 7 HSD17B7 51478 NM_016371 /// XM_006711380 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006703 // estrogen biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000253 // 3-keto sterol reductase activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0005148 // prolactin receptor binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 34.72 65.81 2.97 0.02 0.04 -4.50
211746_x_at 211746_x_at BC005932 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005932.1 /DEF=Homo sapiens, proteasome (prosome, macropain) subunit, alpha type, 1, clone MGC:14542, mRNA, complete cds. /FEA=mRNA /PROD=proteasome (prosome, macropain) subunit, alphatype, 1 /DB_XREF=gi:13543550 /FL=gb:BC005932.1 BC005932 proteasome (prosome, macropain) subunit, alpha type, 1 PSMA1 5682 NM_001143937 /// NM_002786 /// NM_148976 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0005844 // polysome // traceable author statement /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -106.75 1263.10 -2.97 0.02 0.04 -4.50
211271_x_at 211271_x_at BC004383 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004383.1 /DEF=Homo sapiens, Similar to polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I), clone MGC:10830, mRNA, complete cds. /FEA=mRNA /PROD=Similar to polypyrimidine tract binding protein(heterogeneous nuclear ribonucleoprotein I) /DB_XREF=gi:13325139 /UG=Hs.172550 polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) /FL=gb:BC004383.1 BC004383 microRNA 4745 /// polypyrimidine tract binding protein 1 MIR4745 /// PTBP1 5725 /// 100616459 NM_002819 /// NM_031990 /// NM_031991 /// NM_175847 /// NR_039900 /// XM_005259597 /// XM_005259598 /// XR_244034 /// XR_244035 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051148 // negative regulation of muscle cell differentiation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008187 // poly-pyrimidine tract binding // traceable author statement /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 160.90 735.33 2.97 0.02 0.04 -4.50
217888_s_at 217888_s_at NM_018209 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018209.1 /DEF=Homo sapiens hypothetical protein FLJ10767 (FLJ10767), mRNA. /FEA=mRNA /GEN=FLJ10767 /PROD=hypothetical protein FLJ10767 /DB_XREF=gi:8922651 /UG=Hs.25584 hypothetical protein FLJ10767 /FL=gb:NM_018209.1 NM_018209 ADP-ribosylation factor GTPase activating protein 1 ARFGAP1 55738 NM_001281482 /// NM_001281483 /// NM_001281484 /// NM_018209 /// NM_175609 /// NR_104022 /// NR_104023 /// XM_006723823 /// XM_006723824 /// XR_430304 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0030660 // Golgi-associated vesicle membrane // traceable author statement /// 0031965 // nuclear membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 35.45 87.30 2.97 0.02 0.04 -4.50
208716_s_at 208716_s_at AB020980 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB020980.1 /DEF=Homo sapiens mRNA for putative membrane protein, complete cds. /FEA=mRNA /PROD=membrane protein /DB_XREF=gi:6467174 /UG=Hs.93832 putative membrane protein /FL=gb:BC000104.1 gb:AB020980.1 AB020980 transmembrane and coiled-coil domains 1 TMCO1 54499 NM_001256164 /// NM_001256165 /// NM_019026 /// NR_045818 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 90.58 312.39 2.97 0.02 0.04 -4.50
201463_s_at 201463_s_at NM_006755 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006755.1 /DEF=Homo sapiens transaldolase 1 (TALDO1), mRNA. /FEA=mRNA /GEN=TALDO1 /PROD=transaldolase 1 /DB_XREF=gi:5803186 /UG=Hs.77290 transaldolase 1 /FL=gb:L19437.2 gb:NM_006755.1 NM_006755 transaldolase 1 TALDO1 6888 NM_006755 0005975 // carbohydrate metabolic process // traceable author statement /// 0005999 // xylulose biosynthetic process // traceable author statement /// 0006002 // fructose 6-phosphate metabolic process // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from electronic annotation /// 0019682 // glyceraldehyde-3-phosphate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004801 // sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from electronic annotation -96.22 546.31 -2.97 0.02 0.04 -4.50
200025_s_at 200025_s_at NM_000988 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000988.1 /DEF=Homo sapiens ribosomal protein L27 (RPL27), mRNA. /FEA=mRNA /GEN=RPL27 /PROD=ribosomal protein L27 /DB_XREF=gi:4506622 /UG=Hs.111611 ribosomal protein L27 /FL=gb:BC002588.1 gb:L05094.1 gb:L19527.1 gb:NM_000988.1 NM_000988 ribosomal protein L27 RPL27 6155 NM_000988 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -250.95 2650.82 -2.96 0.02 0.04 -4.50
212505_s_at 212505_s_at AL110250 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL110250.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434P101 (from clone DKFZp434P101); partial cds. /FEA=mRNA /GEN=DKFZp434P101 /PROD=hypothetical protein /DB_XREF=gi:5817201 /UG=Hs.112751 KIAA0892 protein AL110250 MAU2 sister chromatid cohesion factor MAU2 23383 NM_015329 /// XM_005259837 /// XM_005259838 /// XM_006722711 /// XR_430132 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0034088 // maintenance of mitotic sister chromatid cohesion // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0032116 // SMC loading complex // inferred from direct assay /// 0032116 // SMC loading complex // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction -44.10 136.95 -2.96 0.02 0.04 -4.51
219110_at 219110_at NM_018983 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018983.1 /DEF=Homo sapiens GAR1 protein (GAR1), mRNA. /FEA=mRNA /GEN=GAR1 /PROD=GAR1 protein /DB_XREF=gi:9506712 /UG=Hs.69851 nucleolar protein family A, member 1 (HACA small nucleolar RNPs) /FL=gb:BC003413.1 gb:NM_018983.1 NM_018983 GAR1 ribonucleoprotein GAR1 54433 NM_018983 /// NM_032993 /// XM_005263069 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006812 // cation transport // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0015030 // Cajal body // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031429 // box H/ACA snoRNP complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005261 // cation channel activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 44.28 218.01 2.96 0.02 0.04 -4.51
209780_at 209780_at AL136883 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136883.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434D166 (from clone DKFZp434D166); complete cds. /FEA=mRNA /GEN=DKFZp434D166 /PROD=hypothetical protein /DB_XREF=gi:12053266 /UG=Hs.128653 hypothetical protein DKFZp564F013 /FL=gb:AL136883.1 AL136883 putative homeodomain transcription factor 2 PHTF2 57157 NM_001127357 /// NM_001127358 /// NM_001127359 /// NM_001127360 /// NM_020432 /// XM_005250508 /// XM_005250509 /// XM_006716063 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation 29.60 66.62 2.96 0.02 0.04 -4.51
202680_at 202680_at NM_002095 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002095.1 /DEF=Homo sapiens general transcription factor IIE, polypeptide 2 (beta subunit, 34kD) (GTF2E2), mRNA. /FEA=mRNA /GEN=GTF2E2 /PROD=general transcription factor IIE, polypeptide 2(beta subunit, 34kD) /DB_XREF=gi:4504194 /UG=Hs.77100 general transcription factor IIE, polypeptide 2 (beta subunit, 34kD) /FL=gb:NM_002095.1 NM_002095 general transcription factor IIE, polypeptide 2, beta 34kDa GTF2E2 2961 NM_002095 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005673 // transcription factor TFIIE complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 42.95 180.40 2.96 0.02 0.04 -4.51
212514_x_at 212514_x_at R60068 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:R60068 /FEA=EST /DB_XREF=gi:830763 /DB_XREF=est:yh12h07.s1 /CLONE=IMAGE:43138 /UG=Hs.147916 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 3 R60068 DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked DDX3X 1654 NM_001193416 /// NM_001193417 /// NM_001356 /// NM_024005 0002376 // immune system process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 0009615 // response to virus // inferred from direct assay /// 0010501 // RNA secondary structure unwinding // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0031333 // negative regulation of protein complex assembly // inferred from direct assay /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0032728 // positive regulation of interferon-beta production // traceable author statement /// 0034063 // stress granule assembly // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042256 // mature ribosome assembly // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045948 // positive regulation of translational initiation // inferred from mutant phenotype /// 0071243 // cellular response to arsenic-containing substance // inferred from direct assay /// 0071470 // cellular response to osmotic stress // inferred from direct assay /// 0071651 // positive regulation of chemokine (C-C motif) ligand 5 production // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004004 // ATP-dependent RNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0008143 // poly(A) binding // inferred from direct assay /// 0008190 // eukaryotic initiation factor 4E binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0031369 // translation initiation factor binding // inferred from direct assay /// 0035613 // RNA stem-loop binding // inferred from direct assay /// 0043024 // ribosomal small subunit binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay -88.98 302.91 -2.95 0.02 0.04 -4.51
203964_at 203964_at NM_004688 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004688.1 /DEF=Homo sapiens N-myc (and STAT) interactor (NMI), mRNA. /FEA=mRNA /GEN=NMI /PROD=N-myc and STAT interactor /DB_XREF=gi:4758813 /UG=Hs.54483 N-myc (and STAT) interactor /FL=gb:BC001268.1 gb:U32849.1 gb:NM_004688.1 NM_004688 N-myc (and STAT) interactor NMI 9111 NM_004688 /// XM_005246941 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0007259 // JAK-STAT cascade // traceable author statement /// 2001141 // regulation of RNA biosynthetic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -43.45 177.30 -2.95 0.02 0.04 -4.51
200634_at 200634_at NM_005022 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005022.1 /DEF=Homo sapiens profilin 1 (PFN1), mRNA. /FEA=mRNA /GEN=PFN1 /PROD=profilin 1 /DB_XREF=gi:4826897 /UG=Hs.75721 profilin 1 /FL=gb:BC002475.1 gb:J03191.1 gb:NM_005022.1 NM_005022 profilin 1 PFN1 5216 NM_005022 0001843 // neural tube closure // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030837 // negative regulation of actin filament polymerization // inferred from direct assay /// 0030838 // positive regulation of actin filament polymerization // inferred from genetic interaction /// 0032232 // negative regulation of actin filament bundle assembly // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050434 // positive regulation of viral transcription // inferred from electronic annotation /// 0051054 // positive regulation of DNA metabolic process // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051497 // negative regulation of stress fiber assembly // inferred from mutant phenotype /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 1900029 // positive regulation of ruffle assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000774 // adenyl-nucleotide exchange factor activity // inferred from direct assay /// 0003779 // actin binding // inferred from physical interaction /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070064 // proline-rich region binding // inferred from physical interaction -360.45 2340.05 -2.95 0.02 0.04 -4.51
207585_s_at 207585_s_at NM_001001 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001001.1 /DEF=Homo sapiens ribosomal protein L36a (RPL36A), mRNA. /FEA=mRNA /GEN=RPL36A /PROD=ribosomal protein L36a /DB_XREF=gi:4506650 /UG=Hs.118857 ribosomal protein L36a /FL=gb:M15661.1 gb:NM_001001.1 NM_001001 ribosomal protein L36a-like RPL36AL 6166 NM_001001 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation -108.82 745.26 -2.95 0.02 0.04 -4.51
214363_s_at 214363_s_at AA129420 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA129420 /FEA=EST /DB_XREF=gi:1689185 /DB_XREF=est:zn85c07.s1 /CLONE=IMAGE:564972 /UG=Hs.78825 matrin 3 AA129420 matrin 3 /// small nucleolar RNA host gene 4 (non-protein coding) MATR3 /// SNHG4 9782 /// 724102 NM_001194954 /// NM_001194955 /// NM_001194956 /// NM_001282278 /// NM_018834 /// NM_199189 /// NR_003141 /// NR_036536 0005634 // nucleus // inferred from direct assay /// 0005637 // nuclear inner membrane // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 122.45 858.73 2.95 0.02 0.04 -4.51
208641_s_at 208641_s_at BC004247 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004247.1 /DEF=Homo sapiens, ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1), clone MGC:10547, mRNA, complete cds. /FEA=mRNA /PROD=ras-related C3 botulinum toxin substrate 1 (rhofamily, small GTP binding protein Rac1) /DB_XREF=gi:13279010 /UG=Hs.173737 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) /FL=gb:BC004247.1 gb:M29870.1 gb:M31467.1 gb:NM_006908.2 BC004247 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) RAC1 5879 NM_006908 /// NM_018890 /// NM_198829 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0002093 // auditory receptor cell morphogenesis // inferred from electronic annotation /// 0002551 // mast cell chemotaxis // inferred from electronic annotation /// 0003382 // epithelial cell morphogenesis // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0006972 // hyperosmotic response // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007160 // cell-matrix adhesion // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009611 // response to wounding // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0010310 // regulation of hydrogen peroxide metabolic process // traceable author statement /// 0010592 // positive regulation of lamellipodium assembly // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016358 // dendrite development // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // inferred from electronic annotation /// 0021831 // embryonic olfactory bulb interneuron precursor migration // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from genetic interaction /// 0030041 // actin filament polymerization // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030334 // regulation of cell migration // inferred from mutant phenotype /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0031295 // T cell costimulation // traceable author statement /// 0031529 // ruffle organization // inferred from direct assay /// 0031529 // ruffle organization // traceable author statement /// 0032707 // negative regulation of interleukin-23 production // inferred from direct assay /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0035025 // positive regulation of Rho protein signal transduction // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // inferred from electronic annotation /// 0043652 // engulfment of apoptotic cell // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0045453 // bone resorption // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048261 // negative regulation of receptor-mediated endocytosis // traceable author statement /// 0048532 // anatomical structure arrangement // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048870 // cell motility // inferred from direct assay /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0051668 // localization within membrane // inferred from mutant phenotype /// 0060071 // Wnt signaling pathway, planar cell polarity pathway // inferred from electronic annotation /// 0060263 // regulation of respiratory burst // inferred from direct assay /// 0071526 // semaphorin-plexin signaling pathway // inferred from sequence or structural similarity /// 0071542 // dopaminergic neuron differentiation // inferred from electronic annotation /// 0090103 // cochlea morphogenesis // inferred from electronic annotation /// 0097178 // ruffle assembly // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0001891 // phagocytic cup // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0019897 // extrinsic component of plasma membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0051022 // Rho GDP-dissociation inhibitor binding // inferred from sequence or structural similarity -210.78 1234.74 -2.95 0.02 0.04 -4.51
200664_s_at 200664_s_at BG537255 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG537255 /FEA=EST /DB_XREF=gi:13529117 /DB_XREF=est:602565318F1 /CLONE=IMAGE:4689748 /UG=Hs.82646 DnaJ (Hsp40) homolog, subfamily B, member 1 /FL=gb:BC002352.1 gb:NM_006145.1 gb:D49547.1 BG537255 DnaJ (Hsp40) homolog, subfamily B, member 1 DNAJB1 3337 NM_006145 /// XM_006722733 /// XM_006722734 /// XM_006722735 /// XM_006722736 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0070389 // chaperone cofactor-dependent protein refolding // inferred from direct assay /// 0090084 // negative regulation of inclusion body assembly // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001671 // ATPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction /// 0051117 // ATPase binding // inferred from physical interaction 34.45 84.65 2.95 0.02 0.04 -4.51
220147_s_at 220147_s_at NM_021238 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021238.1 /DEF=Homo sapiens TERA protein (TERA), mRNA. /FEA=mRNA /GEN=TERA /PROD=TERA protein /DB_XREF=gi:10864048 /UG=Hs.180780 TERA protein /FL=gb:NM_021238.1 gb:BC000024.1 NM_021238 family with sequence similarity 60, member A FAM60A 58516 NM_001135811 /// NM_001135812 /// NM_021238 /// XM_005253456 /// XM_005253457 /// XM_005253458 /// XM_006725149 /// XM_006725150 /// XM_006725151 0030336 // negative regulation of cell migration // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0016580 // Sin3 complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -205.77 485.69 -2.95 0.02 0.04 -4.51
201408_at 201408_at W67887 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W67887 /FEA=EST /DB_XREF=gi:1376776 /DB_XREF=est:zd38c11.s1 /CLONE=IMAGE:342932 /UG=Hs.21537 protein phosphatase 1, catalytic subunit, beta isoform /FL=gb:NM_002709.1 gb:AF092905.1 W67887 protein phosphatase 1, catalytic subunit, beta isozyme PPP1CB 5500 NM_002709 /// NM_206876 /// NM_206877 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0005981 // regulation of glycogen catabolic process // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // traceable author statement /// 0030155 // regulation of cell adhesion // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // inferred from mutant phenotype /// 0043153 // entrainment of circadian clock by photoperiod // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0046822 // regulation of nucleocytoplasmic transport // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0000164 // protein phosphatase type 1 complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0042587 // glycogen granule // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from sequence or structural similarity /// 0017018 // myosin phosphatase activity // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from physical interaction /// 0043021 // ribonucleoprotein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050115 // myosin-light-chain-phosphatase activity // inferred from direct assay 32.28 66.59 2.95 0.02 0.04 -4.51
208939_at 208939_at AV682679 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV682679 /FEA=EST /DB_XREF=gi:10284542 /DB_XREF=est:AV682679 /CLONE=GKBACG02 /UG=Hs.124027 SELENOPHOSPHATE SYNTHETASE ; Human selenium donor protein /FL=gb:BC000941.1 AV682679 selenophosphate synthetase 1 SEPHS1 22929 NM_001195602 /// NM_001195604 /// NM_012247 /// XM_006717433 0006464 // cellular protein modification process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 42.55 148.93 2.95 0.02 0.04 -4.51
217456_x_at 217456_x_at M31183 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:M31183.1 /DEF=Homo sapiens (cosmid clone cd3.3) MHC class I HLA-B51 mRNA, 3 end of cds. /FEA=mRNA /GEN=HLA-B /PROD=MHC class I lymphocyte antigen /DB_XREF=gi:601851 /UG=Hs.181392 major histocompatibility complex, class I, E M31183 major histocompatibility complex, class I, E HLA-E 3133 NM_005516 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002476 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib // inferred from direct assay /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002717 // positive regulation of natural killer cell mediated immunity // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0042288 // MHC class I protein binding // inferred from direct assay /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay -101.58 336.84 -2.95 0.02 0.04 -4.51
217780_at 217780_at NM_016145 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016145.1 /DEF=Homo sapiens PTD008 protein (PTD008), mRNA. /FEA=mRNA /GEN=PTD008 /PROD=PTD008 protein /DB_XREF=gi:7706664 /UG=Hs.108969 PTD008 protein /FL=gb:AF059620.1 gb:AF151898.1 gb:AF078861.1 gb:NM_016145.1 NM_016145 WD repeat domain 83 opposite strand WDR83OS 51398 NM_016145 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -94.03 475.19 -2.94 0.02 0.04 -4.51
200678_x_at 200678_x_at NM_002087 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002087.1 /DEF=Homo sapiens granulin (GRN), mRNA. /FEA=mRNA /GEN=GRN /PROD=granulin /DB_XREF=gi:4504150 /UG=Hs.180577 granulin /FL=gb:M75161.1 gb:AF055008.1 gb:NM_002087.1 NM_002087 granulin GRN 2896 NM_001012479 /// NM_002087 /// XM_005257253 0001835 // blastocyst hatching // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -132.52 586.96 -2.94 0.02 0.04 -4.51
211747_s_at 211747_s_at BC005938 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005938.1 /DEF=Homo sapiens, U6 snRNA-associated Sm-like protein, clone MGC:14558, mRNA, complete cds. /FEA=mRNA /PROD=U6 snRNA-associated Sm-like protein /DB_XREF=gi:13543564 /FL=gb:BC005938.1 BC005938 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) LSM5 23658 NM_001130710 /// NM_001139499 /// NM_012322 /// NR_024466 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement 0005634 // nucleus // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 66.98 277.61 2.94 0.02 0.04 -4.51
202396_at 202396_at NM_006706 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006706.1 /DEF=Homo sapiens transcription factor CA150 (CA150), mRNA. /FEA=mRNA /GEN=CA150 /PROD=transcription factor CA150 /DB_XREF=gi:5729753 /UG=Hs.13063 transcription factor CA150 /FL=gb:AF017789.1 gb:NM_006706.1 NM_006706 transcription elongation regulator 1 TCERG1 10915 NM_001040006 /// NM_006706 /// XM_005268365 /// XM_005268366 /// XM_005268367 /// XM_006714754 /// XR_245850 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070064 // proline-rich region binding // inferred from electronic annotation 66.65 224.80 2.94 0.02 0.04 -4.51
214698_at 214698_at AW190873 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW190873 /FEA=EST /DB_XREF=gi:6465353 /DB_XREF=est:xl66a01.x1 /CLONE=IMAGE:2679624 /UG=Hs.145078 regulator of differentiation (in S. pombe) 1 AW190873 polypyrimidine tract binding protein 3 PTBP3 9991 NM_001163788 /// NM_001163790 /// NM_001244896 /// NM_001244897 /// NM_001244898 /// NM_005156 /// XM_005252324 /// XM_006717343 /// XM_006717344 /// XM_006717345 /// XM_006717346 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0043249 // erythrocyte maturation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -42.18 55.64 -2.94 0.02 0.04 -4.51
200765_x_at 200765_x_at NM_001903 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001903.1 /DEF=Homo sapiens catenin (cadherin-associated protein), alpha 1 (102kD) (CTNNA1), mRNA. /FEA=mRNA /GEN=CTNNA1 /PROD=catenin (cadherin-associated protein), alpha 1(102kD) /DB_XREF=gi:4503126 /UG=Hs.178452 catenin (cadherin-associated protein), alpha 1 (102kD) /FL=gb:L23805.1 gb:NM_001903.1 NM_001903 catenin (cadherin-associated protein), alpha 1, 102kDa CTNNA1 1495 NM_001290307 /// NM_001290309 /// NM_001290310 /// NM_001290312 /// NM_001903 /// XM_005271898 /// XM_005271899 /// XM_006714536 0001541 // ovarian follicle development // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016264 // gap junction assembly // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043297 // apical junction assembly // non-traceable author statement /// 0043627 // response to estrogen // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0050808 // synapse organization // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // inferred from direct assay /// 0090136 // epithelial cell-cell adhesion // inferred from electronic annotation /// 2000146 // negative regulation of cell motility // inferred from electronic annotation /// 2001045 // negative regulation of integrin-mediated signaling pathway // inferred from electronic annotation /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005915 // zonula adherens // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016342 // catenin complex // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0017166 // vinculin binding // inferred from physical interaction /// 0042043 // neurexin family protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045295 // gamma-catenin binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from electronic annotation -161.00 889.30 -2.94 0.02 0.04 -4.51
201310_s_at 201310_s_at NM_004772 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004772.1 /DEF=Homo sapiens P311 protein (P311), mRNA. /FEA=mRNA /GEN=P311 /PROD=P311 protein /DB_XREF=gi:4758865 /UG=Hs.142827 P311 protein /FL=gb:U36189.1 gb:NM_004772.1 gb:U30521.1 NM_004772 neuronal regeneration related protein NREP 9315 NM_001142474 /// NM_001142475 /// NM_001142476 /// NM_001142477 /// NM_001142478 /// NM_001142479 /// NM_001142480 /// NM_001142481 /// NM_001142482 /// NM_001142483 /// NM_004772 /// XM_006714732 /// XM_006714733 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 87.05 278.10 2.93 0.02 0.04 -4.51
212291_at 212291_at AI393355 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI393355 /FEA=EST /DB_XREF=gi:4222902 /DB_XREF=est:tg44d05.x1 /CLONE=IMAGE:2111625 /UG=Hs.12259 KIAA0630 protein AI393355 homeodomain interacting protein kinase 1 HIPK1 204851 NM_152696 /// NM_181358 /// NM_198268 /// NM_198269 /// XM_005270609 /// XM_005270610 /// XM_005270611 /// XM_005270612 /// XM_005270613 /// XM_006710443 0001654 // eye development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010803 // regulation of tumor necrosis factor-mediated signaling pathway // inferred from direct assay /// 0010842 // retina layer formation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016926 // protein desumoylation // inferred from direct assay /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0060059 // embryonic retina morphogenesis in camera-type eye // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // inferred from sequence or structural similarity /// 0060235 // lens induction in camera-type eye // inferred from electronic annotation /// 0061072 // iris morphogenesis // inferred from electronic annotation /// 0072577 // endothelial cell apoptotic process // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation -43.02 66.44 -2.93 0.02 0.04 -4.51
211954_s_at 211954_s_at BC000947 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC000947.2 /DEF=Homo sapiens, clone IMAGE:3450586, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3450586) /DB_XREF=gi:13111828 /UG=Hs.113503 karyopherin (importin) beta 3 /FL=gb:U72761.1 gb:NM_002271.1 BC000947 importin 5 IPO5 3843 NM_002271 /// XM_005254049 /// XM_005254052 /// XM_005254053 0006607 // NLS-bearing protein import into nucleus // inferred from sequence or structural similarity /// 0006610 // ribosomal protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042307 // positive regulation of protein import into nucleus // inferred from sequence or structural similarity /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0071230 // cellular response to amino acid stimulus // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005643 // nuclear pore // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005095 // GTPase inhibitor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay -92.38 351.21 -2.93 0.02 0.04 -4.51
211864_s_at 211864_s_at AF207990 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF207990.1 /DEF=Homo sapiens fer-1 like protein 3 (FER1L3) mRNA, complete cds. /FEA=CDS /GEN=FER1L3 /PROD=fer-1 like protein 3 /DB_XREF=gi:10834586 /UG=Hs.234680 fer-1 (C.elegans)-like 3 (myoferlin) /FL=gb:AF207990.1 AF207990 myoferlin MYOF 26509 NM_013451 /// NM_133337 /// XM_005269693 /// XM_005269694 /// XM_006717760 0001778 // plasma membrane repair // inferred from sequence or structural similarity /// 0006936 // muscle contraction // traceable author statement /// 0008015 // blood circulation // traceable author statement /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0034605 // cellular response to heat // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from sequence or structural similarity -151.38 620.04 -2.93 0.02 0.04 -4.51
222231_s_at 222231_s_at AK025328 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025328.1 /DEF=Homo sapiens cDNA: FLJ21675 fis, clone COL09090, highly similar to AF119857 Homo sapiens PRO1855 mRNA. /FEA=mRNA /DB_XREF=gi:10437822 /UG=Hs.283558 hypothetical protein PRO1855 AK025328 leucine rich repeat containing 59 LRRC59 55379 NM_018509 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 111.55 863.62 2.93 0.02 0.04 -4.51
210249_s_at 210249_s_at U59302 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U59302.1 /DEF=Human steroid receptor coactivator-1 F-SRC-1 mRNA, complete cds. /FEA=mRNA /PROD=steroid receptor coactivator-1 F-SRC-1 /DB_XREF=gi:1480645 /UG=Hs.74002 nuclear receptor coactivator 1 /FL=gb:U40396.1 gb:U59302.1 gb:U90661.1 gb:NM_003743.1 U59302 nuclear receptor coactivator 1 NCOA1 8648 NM_003743 /// NM_147223 /// NM_147233 /// XM_005264625 /// XM_005264626 /// XM_005264627 /// XM_005264628 /// XM_006712126 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000435 // positive regulation of transcription from RNA polymerase II promoter by galactose // inferred from direct assay /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007605 // sensory perception of sound // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0009887 // organ morphogenesis // traceable author statement /// 0014807 // regulation of somitogenesis // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation /// 0021527 // spinal cord association neuron differentiation // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021854 // hypothalamus development // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0042698 // ovulation cycle // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045925 // positive regulation of female receptivity // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0060179 // male mating behavior // inferred from electronic annotation /// 0060206 // estrous cycle phase // inferred from electronic annotation /// 0060594 // mammary gland specification // inferred from electronic annotation /// 0060713 // labyrinthine layer morphogenesis // inferred from electronic annotation /// 2001038 // regulation of cellular response to drug // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0001012 // RNA polymerase II regulatory region DNA binding // inferred from electronic annotation /// 0001105 // RNA polymerase II transcription coactivator activity // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0032403 // protein complex binding // inferred from electronic annotation /// 0033142 // progesterone receptor binding // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from direct assay /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // non-traceable author statement /// 0071837 // HMG box domain binding // inferred from electronic annotation -32.05 140.40 -2.93 0.02 0.04 -4.51
201675_at 201675_at NM_003488 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003488.1 /DEF=Homo sapiens A kinase (PRKA) anchor protein 1 (AKAP1), mRNA. /FEA=mRNA /GEN=AKAP1 /PROD=A kinase (PRKA) anchor protein 1 /DB_XREF=gi:4502014 /UG=Hs.78921 A kinase (PRKA) anchor protein 1 /FL=gb:BC000729.1 gb:NM_003488.1 NM_003488 A kinase (PRKA) anchor protein 1 AKAP1 8165 NM_001242902 /// NM_001242903 /// NM_003488 /// NM_139275 /// XM_005257707 /// XM_005257709 /// XM_006722126 /// XM_006722127 /// XR_243684 0007596 // blood coagulation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 39.40 151.25 2.93 0.02 0.04 -4.51
204559_s_at 204559_s_at NM_016199 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016199.1 /DEF=Homo sapiens U6 snRNA-associated Sm-like protein LSm7 (LOC51690), mRNA. /FEA=mRNA /GEN=LOC51690 /PROD=U6 snRNA-associated Sm-like protein LSm7 /DB_XREF=gi:7706422 /UG=Hs.70830 U6 snRNA-associated Sm-like protein LSm7 /FL=gb:AF182293.1 gb:NM_016199.1 NM_016199 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) LSM7 51690 NM_016199 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017070 // U6 snRNA binding // non-traceable author statement 71.35 194.70 2.92 0.02 0.04 -4.51
202874_s_at 202874_s_at NM_001695 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001695.1 /DEF=Homo sapiens ATPase, H+ transporting, lysosomal (vacuolar proton pump) 42kD (ATP6C), mRNA. /FEA=mRNA /GEN=ATP6C /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) 42kD /DB_XREF=gi:4502314 /UG=Hs.86905 ATPase, H+ transporting, lysosomal (vacuolar proton pump) 42kD /FL=gb:NM_001695.1 NM_001695 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 ATP6V1C1 528 NM_001007254 /// NM_001695 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0033572 // transferrin transport // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016469 // proton-transporting two-sector ATPase complex // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // traceable author statement -77.80 176.07 -2.92 0.02 0.04 -4.51
212691_at 212691_at AW131863 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW131863 /FEA=EST /DB_XREF=gi:6133470 /DB_XREF=est:xf35f02.x1 /CLONE=IMAGE:2620059 /UG=Hs.30002 SH3-containing protein SH3GLB2 AW131863 nucleoporin 188kDa NUP188 23511 NM_015354 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation 34.68 103.24 2.92 0.02 0.04 -4.51
202078_at 202078_at NM_003653 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003653.1 /DEF=Homo sapiens COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 3 (COPS3), mRNA. /FEA=mRNA /GEN=COPS3 /PROD=COP9 (constitutive photomorphogenic,Arabidopsis, homolog) subunit 3 /DB_XREF=gi:4502974 /UG=Hs.6076 COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 3 /FL=gb:BC001891.1 gb:AF031647.1 gb:NM_003653.1 gb:AF098109.1 NM_003653 COP9 signalosome subunit 3 COPS3 8533 NM_001199125 /// NM_003653 /// XM_005256837 /// XM_005256838 /// XM_005256839 /// XM_005256840 /// XM_005256841 /// XM_005256842 0001701 // in utero embryonic development // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0009416 // response to light stimulus // traceable author statement /// 0010388 // cullin deneddylation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // COP9 signalosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 34.55 159.75 2.92 0.02 0.04 -4.51
209209_s_at 209209_s_at AW469573 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW469573 /FEA=EST /DB_XREF=gi:7039679 /DB_XREF=est:hd29e09.x1 /CLONE=IMAGE:2910952 /UG=Hs.75260 mitogen inducible 2 /FL=gb:Z24725.1 AW469573 fermitin family member 2 FERMT2 10979 NM_001134999 /// NM_001135000 /// NM_006832 /// XM_005267285 /// XM_006720008 /// XM_006720009 /// XM_006720010 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from mutant phenotype /// 0007160 // cell-matrix adhesion // inferred from sequence or structural similarity /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // non-traceable author statement /// 0033622 // integrin activation // inferred from mutant phenotype /// 0034329 // cell junction assembly // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0048041 // focal adhesion assembly // inferred from sequence or structural similarity /// 0072657 // protein localization to membrane // inferred from sequence or structural similarity 0001725 // stress fiber // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation -68.65 209.82 -2.92 0.02 0.04 -4.51
202484_s_at 202484_s_at AF072242 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF072242.1 /DEF=Homo sapiens methyl-CpG binding protein MBD2 (MBD2) mRNA, complete cds. /FEA=mRNA /GEN=MBD2 /PROD=methyl-CpG binding protein MBD2 /DB_XREF=gi:3800792 /UG=Hs.25674 methyl-CpG binding domain protein 2 /FL=gb:AF072242.1 gb:NM_003927.2 AF072242 methyl-CpG binding domain protein 2 MBD2 8932 NM_003927 /// NM_015832 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042711 // maternal behavior // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0043623 // cellular protein complex assembly // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003696 // satellite DNA binding // traceable author statement /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008327 // methyl-CpG binding // inferred from direct assay /// 0008327 // methyl-CpG binding // non-traceable author statement /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0035197 // siRNA binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // inferred from physical interaction 70.25 321.50 2.92 0.02 0.04 -4.51
204059_s_at 204059_s_at NM_002395 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002395.2 /DEF=Homo sapiens malic enzyme 1, NADP(+)-dependent, cytosolic (ME1), mRNA. /FEA=mRNA /GEN=ME1 /PROD=cytosolic malic enzyme 1 /DB_XREF=gi:13435400 /UG=Hs.14732 malic enzyme 1, NADP(+)-dependent, cytosolic /FL=gb:NM_002395.2 NM_002395 malic enzyme 1, NADP(+)-dependent, cytosolic ME1 4199 NM_002395 0005975 // carbohydrate metabolic process // non-traceable author statement /// 0006108 // malate metabolic process // inferred from direct assay /// 0006741 // NADP biosynthetic process // traceable author statement /// 0009725 // response to hormone // inferred from sequence or structural similarity /// 0009743 // response to carbohydrate // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement 0004470 // malic enzyme activity // inferred from direct assay /// 0004471 // malate dehydrogenase (decarboxylating) (NAD+) activity // inferred from electronic annotation /// 0004473 // malate dehydrogenase (decarboxylating) (NADP+) activity // inferred from direct assay /// 0004473 // malate dehydrogenase (decarboxylating) (NADP+) activity // inferred from sequence or structural similarity /// 0008948 // oxaloacetate decarboxylase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0043531 // ADP binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP binding // traceable author statement /// 0051287 // NAD binding // traceable author statement -62.82 180.54 -2.92 0.02 0.04 -4.51
217740_x_at 217740_x_at NM_000972 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000972.1 /DEF=Homo sapiens ribosomal protein L7a (RPL7A), mRNA. /FEA=mRNA /GEN=RPL7A /PROD=ribosomal protein L7a /DB_XREF=gi:4506660 /UG=Hs.99858 ribosomal protein L7a /FL=gb:BC005128.1 gb:M36072.1 gb:NM_000972.1 NM_000972 ribosomal protein L7a /// small nucleolar RNA, C/D box 24 /// small nucleolar RNA, C/D box 36A /// small nucleolar RNA, C/D box 36B RPL7A /// SNORD24 /// SNORD36A /// SNORD36B 6130 /// 26814 /// 26815 /// 26820 NM_000972 /// NR_000017 /// NR_002447 /// NR_002448 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0042788 // polysomal ribosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -1291.45 4520.57 -2.92 0.02 0.04 -4.51
203605_at 203605_at NM_003136 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003136.1 /DEF=Homo sapiens signal recognition particle 54kD (SRP54), mRNA. /FEA=mRNA /GEN=SRP54 /PROD=signal recognition particle 54kD /DB_XREF=gi:4507214 /UG=Hs.49346 signal recognition particle 54kD /FL=gb:U51920.1 gb:BC000652.1 gb:BC003389.1 gb:NM_003136.1 NM_003136 signal recognition particle 54kDa SRP54 6729 NM_001146282 /// NM_003136 /// XM_005268024 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred by curator /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006616 // SRP-dependent cotranslational protein targeting to membrane, translocation // inferred from sequence or structural similarity /// 0006617 // SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0042493 // response to drug // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045047 // protein targeting to ER // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005525 // GTP binding // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008312 // 7S RNA binding // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0030942 // endoplasmic reticulum signal peptide binding // inferred from direct assay /// 0043021 // ribonucleoprotein complex binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 66.08 271.56 2.92 0.02 0.04 -4.51
212461_at 212461_at BF793951 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF793951 /FEA=EST /DB_XREF=gi:12099005 /DB_XREF=est:602254576F1 /CLONE=IMAGE:4346922 /UG=Hs.278614 protease, serine, 15 BF793951 antizyme inhibitor 1 AZIN1 51582 NM_015878 /// NM_148174 /// XM_005250969 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042177 // negative regulation of protein catabolic process // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // traceable author statement /// 0042978 // ornithine decarboxylase activator activity // inferred from electronic annotation 44.22 276.46 2.92 0.02 0.04 -4.51
208819_at 208819_at BC002977 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002977.1 /DEF=Homo sapiens, mel transforming oncogene (derived from cell line NK14)- RAB8 homolog, clone MGC:2196, mRNA, complete cds. /FEA=mRNA /PROD=mel transforming oncogene (derived from cellline NK14)- RAB8 homolog /DB_XREF=gi:12804236 /UG=Hs.5947 mel transforming oncogene (derived from cell line NK14)- RAB8 homolog /FL=gb:BC002977.1 gb:NM_005370.2 BC002977 RAB8A, member RAS oncogene family RAB8A 4218 NM_005370 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from direct assay /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048210 // Golgi vesicle fusion to target membrane // inferred from direct assay /// 0051223 // regulation of protein transport // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0072659 // protein localization to plasma membrane // inferred from sequence or structural similarity 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031513 // nonmotile primary cilium // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from electronic annotation 51.10 235.22 2.91 0.02 0.04 -4.51
211967_at 211967_at BG538627 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG538627 /FEA=EST /DB_XREF=gi:13530860 /DB_XREF=est:602567359F1 /CLONE=IMAGE:4691726 /UG=Hs.172089 Homo sapiens mRNA; cDNA DKFZp586I2022 (from clone DKFZp586I2022) BG538627 transmembrane protein 123 TMEM123 114908 NM_052932 0070267 // oncosis // inferred from direct assay 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0004872 // receptor activity // non-traceable author statement 133.20 492.68 2.91 0.02 0.04 -4.51
209361_s_at 209361_s_at BC004153 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004153.1 /DEF=Homo sapiens, Similar to poly(rC)-binding protein 4, clone MGC:2386, mRNA, complete cds. /FEA=mRNA /PROD=Similar to poly(rC)-binding protein 4 /DB_XREF=gi:13278755 /UG=Hs.20930 poly(rC)-binding protein 4 /FL=gb:BC003008.1 gb:BC004153.1 BC004153 poly(rC) binding protein 4 PCBP4 57060 NM_001174100 /// NM_020418 /// NM_033008 /// NM_033009 /// NM_033010 /// XM_005265330 /// XM_005265331 /// XM_005265332 /// XM_006713266 /// XM_006713267 /// XM_006713268 /// XM_006713269 /// XM_006713270 /// XM_006713271 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from direct assay /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 35.70 100.40 2.91 0.02 0.04 -4.51
211697_x_at 211697_x_at AF349314 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF349314.1 /DEF=Homo sapiens RNA-binding protein LOC56902 mRNA, complete cds. /FEA=mRNA /PROD=RNA-binding protein LOC56902 /DB_XREF=gi:13540364 /FL=gb:AF349314.1 AF349314 partner of NOB1 homolog (S. cerevisiae) PNO1 56902 NM_020143 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -49.42 213.31 -2.91 0.02 0.04 -4.51
210950_s_at 210950_s_at BC003573 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003573.1 /DEF=Homo sapiens, farnesyl-diphosphate farnesyltransferase 1, clone MGC:2200, mRNA, complete cds. /FEA=mRNA /PROD=farnesyl-diphosphate farnesyltransferase 1 /DB_XREF=gi:13097746 /UG=Hs.48876 farnesyl-diphosphate farnesyltransferase 1 /FL=gb:BC003573.1 BC003573 farnesyl-diphosphate farnesyltransferase 1 FDFT1 2222 NM_001287742 /// NM_001287743 /// NM_001287744 /// NM_001287745 /// NM_001287747 /// NM_001287748 /// NM_001287749 /// NM_001287750 /// NM_001287751 /// NM_001287756 /// NM_004462 /// XM_006716247 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045338 // farnesyl diphosphate metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from electronic annotation /// 0051996 // squalene synthase activity // inferred from electronic annotation 121.37 334.11 2.91 0.02 0.04 -4.51
200665_s_at 200665_s_at NM_003118 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003118.1 /DEF=Homo sapiens secreted protein, acidic, cysteine-rich (osteonectin) (SPARC), mRNA. /FEA=mRNA /GEN=SPARC /PROD=secreted protein, acidic, cysteine-rich(osteonectin) /DB_XREF=gi:4507170 /UG=Hs.111779 secreted protein, acidic, cysteine-rich (osteonectin) /FL=gb:BC004974.1 gb:J03040.1 gb:NM_003118.1 NM_003118 secreted protein, acidic, cysteine-rich (osteonectin) SPARC 6678 NM_003118 0001503 // ossification // inferred from electronic annotation /// 0002446 // neutrophil mediated immunity // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009629 // response to gravity // inferred from electronic annotation /// 0010288 // response to lead ion // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // inferred from electronic annotation /// 0033591 // response to L-ascorbic acid // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043312 // neutrophil degranulation // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045088 // regulation of innate immune response // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0060348 // bone development // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016461 // unconventional myosin complex // non-traceable author statement /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031941 // filamentous actin // inferred from electronic annotation /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005518 // collagen binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation 214.95 1566.55 2.91 0.02 0.04 -4.51
202141_s_at 202141_s_at BC003090 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003090.1 /DEF=Homo sapiens, COP9 homolog, clone MGC:1297, mRNA, complete cds. /FEA=mRNA /PROD=COP9 homolog /DB_XREF=gi:13111846 /UG=Hs.75193 COP9 homolog /FL=gb:BC003090.1 gb:U51205.1 gb:NM_006710.1 BC003090 COP9 signalosome subunit 8 COPS8 10920 NM_006710 /// NM_198189 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010388 // cullin deneddylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 62.10 396.20 2.91 0.02 0.04 -4.51
212546_s_at 212546_s_at AI126634 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI126634 /FEA=EST /DB_XREF=gi:3595148 /DB_XREF=est:qd83b10.x1 /CLONE=IMAGE:1736059 /UG=Hs.169600 KIAA0826 protein AI126634 FRY-like FRYL 285527 NM_001039751 /// NM_015030 /// XM_005248082 /// XM_005248083 /// XM_005248084 /// XM_005248085 /// XM_005248086 /// XM_005248087 /// XM_005248088 /// XM_005248089 /// XM_005248090 /// XM_005248091 /// XM_005248093 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -54.40 218.50 -2.90 0.02 0.04 -4.51
208811_s_at 208811_s_at AF080569 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF080569.1 /DEF=Homo sapiens DnaJ-like 2 protein (HSJ2) mRNA, complete cds. /FEA=mRNA /GEN=HSJ2 /PROD=DnaJ-like 2 protein /DB_XREF=gi:4322314 /UG=Hs.181195 DnaJ (Hsp40) homolog, subfamily B, member 6 /FL=gb:AL136707.1 gb:BC000177.2 gb:AB014888.1 gb:AF080569.1 gb:NM_005494.1 gb:AF075601.1 gb:AF060703.1 gb:AB015799.1 AF080569 DnaJ (Hsp40) homolog, subfamily B, member 6 /// transmembrane protein 135 DNAJB6 /// TMEM135 10049 /// 65084 NM_001168724 /// NM_005494 /// NM_022918 /// NM_058246 /// NR_033149 /// XM_005249515 /// XM_005249516 /// XM_006715823 /// XM_006718667 /// XM_006718668 0006457 // protein folding // inferred from direct assay /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007031 // peroxisome organization // inferred from sequence or structural similarity /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0034504 // protein localization to nucleus // inferred from electronic annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0045109 // intermediate filament organization // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0060715 // syncytiotrophoblast cell differentiation involved in labyrinthine layer development // inferred from electronic annotation /// 0060717 // chorion development // inferred from electronic annotation /// 0090084 // negative regulation of inclusion body assembly // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001671 // ATPase activator activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction -42.08 156.01 -2.90 0.02 0.04 -4.51
212359_s_at 212359_s_at W89120 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W89120 /FEA=EST /DB_XREF=gi:1404482 /DB_XREF=est:zh69b03.s1 /CLONE=IMAGE:417293 /UG=Hs.65135 KIAA0913 protein W89120 zinc finger, SWIM-type containing 8 ZSWIM8 23053 NM_001242487 /// NM_001242488 /// NM_015037 /// XM_005269648 /// XM_005269649 /// XM_005269651 /// XM_005269652 /// XM_005269653 /// XM_005269655 /// XM_006717725 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -42.90 139.43 -2.90 0.02 0.04 -4.51
218755_at 218755_at NM_005733 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005733.1 /DEF=Homo sapiens RAB6 interacting, kinesin-like (rabkinesin6) (RAB6KIFL), mRNA. /FEA=mRNA /GEN=RAB6KIFL /PROD=RAB6 interacting, kinesin-like (rabkinesin6) /DB_XREF=gi:5032012 /UG=Hs.73625 RAB6 interacting, kinesin-like (rabkinesin6) /FL=gb:AF070672.1 gb:AF153329.1 gb:NM_005733.1 NM_005733 kinesin family member 20A KIF20A 10112 NM_005733 /// XM_006714514 0000278 // mitotic cell cycle // traceable author statement /// 0000910 // cytokinesis // inferred from direct assay /// 0001578 // microtubule bundle formation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005215 // transporter activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction 41.40 158.57 2.90 0.02 0.04 -4.51
217526_at 217526_at AI478300 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI478300 /FEA=EST /DB_XREF=gi:4371526 /DB_XREF=est:tm39e01.x1 /CLONE=IMAGE:2160504 /UG=Hs.192789 ESTs, Weakly similar to ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE CONTAMINATION WARNING ENTRY H.sapiens AI478300 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein NFATC2IP 84901 NM_032815 0001816 // cytokine production // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 57.05 74.92 2.90 0.02 0.04 -4.51
201532_at 201532_at NM_002788 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002788.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 3 (PSMA3), mRNA. /FEA=mRNA /GEN=PSMA3 /PROD=proteasome (prosome, macropain) subunit, alphatype, 3 /DB_XREF=gi:4506182 /UG=Hs.167106 proteasome (prosome, macropain) subunit, alpha type, 3 /FL=gb:BC005265.1 gb:NM_002788.1 NM_002788 proteasome (prosome, macropain) subunit, alpha type, 3 PSMA3 5684 NM_002788 /// NM_152132 /// NR_038123 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from direct assay /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 148.13 701.04 2.90 0.02 0.04 -4.51
202737_s_at 202737_s_at NM_012321 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012321.1 /DEF=Homo sapiens U6 snRNA-associated Sm-like protein (LSM4), mRNA. /FEA=mRNA /GEN=LSM4 /PROD=U6 snRNA-associated Sm-like protein /DB_XREF=gi:6912485 /UG=Hs.76719 U6 snRNA-associated Sm-like protein /FL=gb:BC000387.1 gb:BC003652.1 gb:AF182290.1 gb:AF117235.1 gb:NM_012321.1 gb:AF251218.1 NM_012321 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) LSM4 25804 NM_001252129 /// NM_012321 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005688 // U6 snRNP // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 40.97 227.29 2.90 0.02 0.04 -4.51
203643_at 203643_at NM_006494 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006494.1 /DEF=Homo sapiens Ets2 repressor factor (ERF), mRNA. /FEA=mRNA /GEN=ERF /PROD=Ets2 repressor factor /DB_XREF=gi:5729813 /UG=Hs.333069 Ets2 repressor factor /FL=gb:U15655.1 gb:NM_006494.1 NM_006494 Ets2 repressor factor ERF 2077 NM_006494 /// XM_005258643 /// XM_005258644 /// XM_006723079 /// XM_006723080 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007049 // cell cycle // non-traceable author statement /// 0010668 // ectodermal cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 29.88 76.11 2.90 0.02 0.04 -4.51
206113_s_at 206113_s_at NM_004162 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004162.1 /DEF=Homo sapiens RAB5A, member RAS oncogene family (RAB5A), mRNA. /FEA=mRNA /GEN=RAB5A /PROD=RAB5A, member RAS oncogene family /DB_XREF=gi:4759003 /UG=Hs.73957 RAB5A, member RAS oncogene family /FL=gb:NM_004162.1 gb:M28215.1 NM_004162 RAB5A, member RAS oncogene family RAB5A 5868 NM_001292048 /// NM_004162 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045921 // positive regulation of exocytosis // inferred from mutant phenotype /// 0051489 // regulation of filopodium assembly // inferred from direct assay /// 2000286 // receptor internalization involved in canonical Wnt signaling pathway // inferred from mutant phenotype 0001726 // ruffle // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // traceable author statement /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043195 // terminal bouton // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay -59.40 159.97 -2.90 0.02 0.04 -4.51
201951_at 201951_at BF242905 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF242905 /FEA=EST /DB_XREF=gi:11156833 /DB_XREF=est:601877949F1 /CLONE=IMAGE:4106028 /UG=Hs.10247 activated leucocyte cell adhesion molecule /FL=gb:NM_001627.1 gb:L38608.1 BF242905 activated leukocyte cell adhesion molecule ALCAM 214 NM_001243280 /// NM_001243281 /// NM_001243283 /// NM_001627 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008045 // motor neuron axon guidance // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -129.63 282.46 -2.90 0.02 0.04 -4.51
222158_s_at 222158_s_at AF229834 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF229834.1 /DEF=Homo sapiens apoptosis-related protein PNAS-4 (PNAS-4) mRNA, partial cds. /FEA=mRNA /GEN=PNAS-4 /PROD=apoptosis-related protein PNAS-4 /DB_XREF=gi:7229639 /UG=Hs.42409 CGI-146 protein AF229834 desumoylating isopeptidase 2 DESI2 51029 NM_016076 /// XM_005273154 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -100.78 263.31 -2.89 0.02 0.04 -4.51
201416_at 201416_at BG528420 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG528420 /FEA=EST /DB_XREF=gi:13519957 /DB_XREF=est:602579853F1 /CLONE=IMAGE:4719060 /UG=Hs.83484 SRY (sex determining region Y)-box 4 /FL=gb:NM_003107.1 BG528420 SRY (sex determining region Y)-box 4 SOX4 6659 NM_003107 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001841 // neural tube formation // inferred from sequence or structural similarity /// 0002328 // pro-B cell differentiation // inferred from sequence or structural similarity /// 0003183 // mitral valve morphogenesis // inferred from sequence or structural similarity /// 0003211 // cardiac ventricle formation // inferred from sequence or structural similarity /// 0003215 // cardiac right ventricle morphogenesis // inferred from sequence or structural similarity /// 0003289 // atrial septum primum morphogenesis // inferred from sequence or structural similarity /// 0003357 // noradrenergic neuron differentiation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from mutant phenotype /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014009 // glial cell proliferation // inferred from sequence or structural similarity /// 0021510 // spinal cord development // inferred from sequence or structural similarity /// 0021522 // spinal cord motor neuron differentiation // inferred from sequence or structural similarity /// 0021782 // glial cell development // inferred from sequence or structural similarity /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // inferred from mutant phenotype /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from sequence or structural similarity /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035910 // ascending aorta morphogenesis // inferred from sequence or structural similarity /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042769 // DNA damage response, detection of DNA damage // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046826 // negative regulation of protein export from nucleus // inferred from mutant phenotype /// 0048485 // sympathetic nervous system development // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0060070 // canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0060174 // limb bud formation // inferred from sequence or structural similarity /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060548 // negative regulation of cell death // inferred from sequence or structural similarity /// 0060563 // neuroepithelial cell differentiation // inferred from sequence or structural similarity /// 0060993 // kidney morphogenesis // inferred from sequence or structural similarity /// 0071333 // cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 2000761 // positive regulation of N-terminal peptidyl-lysine acetylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001046 // core promoter sequence-specific DNA binding // inferred from direct assay /// 0001071 // nucleic acid binding transcription factor activity // inferred from mutant phenotype /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -434.58 943.21 -2.89 0.02 0.04 -4.51
202325_s_at 202325_s_at NM_001685 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001685.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 (ATP5J), mRNA. /FEA=mRNA /GEN=ATP5J /PROD=ATP synthase, H+ transporting, mitochondrial /DB_XREF=gi:4502292 /UG=Hs.73851 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 /FL=gb:M37104.1 gb:M73031.1 gb:NM_001685.1 gb:AL110183.1 NM_001685 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 ATP5J 522 NM_001003696 /// NM_001003697 /// NM_001003701 /// NM_001003703 /// NM_001685 /// XM_005260992 0006200 // ATP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator 147.97 572.16 2.89 0.02 0.04 -4.51
208628_s_at 208628_s_at BC002411 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002411.1 /DEF=Homo sapiens, Similar to Y box protein 1, clone MGC:8655, mRNA, complete cds. /FEA=mRNA /PROD=Similar to Y box protein 1 /DB_XREF=gi:12803206 /UG=Hs.74497 nuclease sensitive element binding protein 1 /FL=gb:BC002411.1 BC002411 Y box binding protein 1 YBX1 4904 NM_004559 /// XM_005270904 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement /// 0051154 // negative regulation of striated muscle cell differentiation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 102.22 1628.54 2.89 0.02 0.04 -4.51
211296_x_at 211296_x_at AB009010 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB009010.1 /DEF=Homo sapiens mRNA for polyubiquitin UbC, complete cds. /FEA=mRNA /GEN=UbC1 /PROD=polyubiquitin UbC /DB_XREF=gi:2647407 /UG=Hs.183704 ubiquitin C /FL=gb:BC000449.1 gb:AB009010.1 AB009010 ubiquitin C UBC 7316 NM_021009 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007144 // female meiosis I // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007254 // JNK cascade // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008584 // male gonad development // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010992 // ubiquitin homeostasis // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0021888 // hypothalamus gonadotrophin-releasing hormone neuron development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0032479 // regulation of type I interferon production // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060612 // adipose tissue development // inferred from electronic annotation /// 0060613 // fat pad development // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement /// 0072520 // seminiferous tubule development // inferred from electronic annotation /// 0075733 // intracellular transport of virus // traceable author statement /// 0097009 // energy homeostasis // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0030666 // endocytic vesicle membrane // traceable author statement 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -1733.40 4908.43 -2.89 0.02 0.04 -4.51
208264_s_at 208264_s_at NM_003758 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003758.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 1 (alpha, 35kD) (EIF3S1), mRNA. /FEA=mRNA /GEN=EIF3S1 /PROD=eukaryotic translation initiation factor 3,subunit 1 (alpha, 35kD) /DB_XREF=gi:4503510 /UG=Hs.173987 eukaryotic translation initiation factor 3, subunit 1 (alpha, 35kD) /FL=gb:U97670.1 gb:NM_003758.1 NM_003758 eukaryotic translation initiation factor 3, subunit J EIF3J 8669 NM_001284335 /// NM_001284336 /// NM_003758 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0005515 // protein binding // inferred from physical interaction 29.10 71.90 2.89 0.02 0.04 -4.51
203185_at 203185_at NM_014737 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014737.1 /DEF=Homo sapiens Ras association (RalGDSAF-6) domain family 2 (RASSF2), mRNA. /FEA=mRNA /GEN=RASSF2 /PROD=Ras association (RalGDSAF-6) domain family 2 /DB_XREF=gi:7661963 /UG=Hs.80905 Ras association (RalGDSAF-6) domain family 2 /FL=gb:D79990.1 gb:NM_014737.1 NM_014737 Ras association (RalGDS/AF-6) domain family member 2 RASSF2 9770 NM_014737 /// NM_170774 /// XM_005260895 /// XM_006723668 /// XM_006723669 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 65.30 176.70 2.89 0.02 0.04 -4.51
201226_at 201226_at NM_005004 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005004.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 (19kD, ASHI) (NDUFB8), mRNA. /FEA=mRNA /GEN=NDUFB8 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 8 (19kD, ASHI) /DB_XREF=gi:4826853 /UG=Hs.198273 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 (19kD, ASHI) /FL=gb:BC000466.1 gb:AF044958.1 gb:AF077028.1 gb:NM_005004.1 gb:AL080056.1 NM_005004 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa NDUFB8 4714 NM_001284367 /// NM_001284368 /// NM_005004 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement -92.65 506.07 -2.89 0.02 0.04 -4.51
200742_s_at 200742_s_at BG231932 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG231932 /FEA=EST /DB_XREF=gi:12727071 /DB_XREF=est:naf34b12.x1 /CLONE=IMAGE:4142926 /UG=Hs.20478 ceroid-lipofuscinosis, neuronal 2, late infantile (Jansky-Bielschowsky disease) /FL=gb:AF017456.1 gb:NM_000391.2 BG231932 tripeptidyl peptidase I TPP1 1200 NM_000391 0006508 // proteolysis // inferred from mutant phenotype /// 0006629 // lipid metabolic process // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007040 // lysosome organization // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0030163 // protein catabolic process // non-traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0043171 // peptide catabolic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045453 // bone resorption // inferred from mutant phenotype /// 0050885 // neuromuscular process controlling balance // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from mutant phenotype /// 0042470 // melanosome // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // inferred from mutant phenotype /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from mutant phenotype /// 0008236 // serine-type peptidase activity // inferred from mutant phenotype /// 0008240 // tripeptidyl-peptidase activity // inferred from direct assay /// 0008240 // tripeptidyl-peptidase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -63.95 355.57 -2.89 0.02 0.04 -4.51
202724_s_at 202724_s_at NM_002015 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002015.2 /DEF=Homo sapiens forkhead box O1A (rhabdomyosarcoma) (FOXO1A), mRNA. /FEA=mRNA /GEN=FOXO1A /PROD=forkhead box O1A /DB_XREF=gi:9257221 /UG=Hs.170133 forkhead box O1A (rhabdomyosarcoma) /FL=gb:AF032885.1 gb:U02310.1 gb:NM_002015.2 NM_002015 forkhead box O1 FOXO1 2308 NM_002015 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001659 // temperature homeostasis // inferred from sequence or structural similarity /// 0001678 // cellular glucose homeostasis // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006473 // protein acetylation // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from sequence or structural similarity /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007389 // pattern specification process // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009267 // cellular response to starvation // inferred from direct assay /// 0009267 // cellular response to starvation // inferred from sequence or structural similarity /// 0009790 // embryo development // /// 0009888 // tissue development // not recorded /// 0010508 // positive regulation of autophagy // inferred from mutant phenotype /// 0031018 // endocrine pancreas development // traceable author statement /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0032873 // negative regulation of stress-activated MAPK cascade // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from sequence or structural similarity /// 0035947 // regulation of gluconeogenesis by regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045722 // positive regulation of gluconeogenesis // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0070417 // cellular response to cold // inferred from sequence or structural similarity /// 0071455 // cellular response to hyperoxia // inferred from direct assay /// 0071732 // cellular response to nitric oxide // inferred from sequence or structural similarity /// 2000505 // regulation of energy homeostasis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008301 // DNA binding, bending // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0051721 // protein phosphatase 2A binding // inferred from sequence or structural similarity -52.18 163.89 -2.89 0.02 0.04 -4.51
212663_at 212663_at AB014574 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB014574.1 /DEF=Homo sapiens mRNA for KIAA0674 protein, partial cds. /FEA=mRNA /GEN=KIAA0674 /PROD=KIAA0674 protein /DB_XREF=gi:3327161 /UG=Hs.14799 KIAA0674 protein AB014574 FK506 binding protein 15, 133kDa FKBP15 23307 NM_015258 /// XM_006717018 /// XM_006717019 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0010923 // negative regulation of phosphatase activity // inferred from direct assay /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 29.57 157.36 2.89 0.02 0.04 -4.51
46665_at 46665_at AI949392 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI949392:wq11a04.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2470926 /clone_end=3' /gb=AI949392 /gi=5741790 /ug=Hs.7188 /len=596 AI949392 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C SEMA4C 54910 NM_017789 /// XM_006712606 0001843 // neural tube closure // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0021535 // cell migration in hindbrain // inferred from sequence or structural similarity /// 0021549 // cerebellum development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from direct assay /// 0042692 // muscle cell differentiation // inferred from direct assay /// 0071526 // semaphorin-plexin signaling pathway // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -37.00 82.20 -2.88 0.02 0.04 -4.51
213396_s_at 213396_s_at AA456929 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA456929 /FEA=EST /DB_XREF=gi:2179649 /DB_XREF=est:aa90c03.s1 /CLONE=IMAGE:838564 /UG=Hs.75456 A kinase (PRKA) anchor protein 10 AA456929 A kinase (PRKA) anchor protein 10 AKAP10 11216 NM_007202 /// XM_006721431 /// XM_006721432 /// XM_006721433 /// XR_243536 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0016301 // kinase activity // inferred from electronic annotation -41.97 102.86 -2.88 0.02 0.04 -4.51
208983_s_at 208983_s_at M37780 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M37780.1 /DEF=Human leukocyte surface protein (CD31) mRNA, complete cds. /FEA=mRNA /GEN=CD31 /PROD=leukocyte surface protein /DB_XREF=gi:187239 /UG=Hs.78146 plateletendothelial cell adhesion molecule (CD31 antigen) /FL=gb:M37780.1 gb:M28526.1 gb:NM_000442.1 M37780 platelet/endothelial cell adhesion molecule 1 PECAM1 5175 NM_000442 /// XM_005276880 /// XM_005276881 /// XM_005276882 /// XM_005276883 /// XM_006721944 /// XM_006721945 0002576 // platelet degranulation // traceable author statement /// 0006909 // phagocytosis // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008037 // cell recognition // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0050904 // diapedesis // inferred from direct assay /// 0072011 // glomerular endothelium development // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -193.27 953.99 -2.88 0.02 0.04 -4.51
203733_at 203733_at NM_014015 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014015.2 /DEF=Homo sapiens MYLE protein (MYLE), mRNA. /FEA=mRNA /GEN=MYLE /PROD=MYLE protein /DB_XREF=gi:13384596 /UG=Hs.11902 MYLE protein /FL=gb:BC001083.1 gb:AF108145.2 gb:NM_014015.2 NM_014015 Dexi homolog (mouse) DEXI 28955 NM_014015 30.35 116.53 2.88 0.02 0.04 -4.51
200044_at 200044_at NM_003769 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003769.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 9 (SFRS9), mRNA. /FEA=mRNA /GEN=SFRS9 /PROD=splicing factor, arginineserine-rich 9 /DB_XREF=gi:4506902 /UG=Hs.77608 splicing factor, arginineserine-rich 9 /FL=gb:U30825.1 gb:NM_003769.1 NM_003769 glutamyl-tRNA(Gln) amidotransferase, subunit C /// serine/arginine-rich splicing factor 9 GATC /// SRSF9 8683 /// 283459 NM_003769 /// NM_176818 /// NR_033684 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006376 // mRNA splice site selection // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006450 // regulation of translational fidelity // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0032543 // mitochondrial translation // inferred from mutant phenotype /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0070681 // glutaminyl-tRNAGln biosynthesis via transamidation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0030956 // glutamyl-tRNA(Gln) amidotransferase complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity, with glutamine as amido-N-donor // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050567 // glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity // inferred from direct assay 65.25 589.83 2.88 0.02 0.04 -4.51
201299_s_at 201299_s_at NM_018221 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018221.1 /DEF=Homo sapiens hypothetical protein FLJ10788 (FLJ10788), mRNA. /FEA=mRNA /GEN=FLJ10788 /PROD=hypothetical protein FLJ10788 /DB_XREF=gi:8922670 /UG=Hs.196437 hypothetical protein FLJ10788 /FL=gb:AB016839.1 gb:BC003398.1 gb:NM_018221.1 NM_018221 MOB kinase activator 1A MOB1A 55233 NM_018221 0035329 // hippo signaling // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 55.75 104.27 2.88 0.02 0.04 -4.51
218497_s_at 218497_s_at NM_002936 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002936.1 /DEF=Homo sapiens ribonuclease H1 (RNASEH1), mRNA. /FEA=mRNA /GEN=RNASEH1 /PROD=ribonuclease H1 /DB_XREF=gi:4506554 /UG=Hs.178655 ribonuclease H1 /FL=gb:BC002973.1 gb:AF048994.1 gb:AF048995.1 gb:AF039652.1 gb:NM_002936.1 NM_002936 ribonuclease H1 RNASEH1 246243 NM_001286834 /// NM_001286837 /// NM_002936 /// XR_244873 0006264 // mitochondrial DNA replication // inferred from electronic annotation /// 0006401 // RNA catabolic process // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // traceable author statement /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004523 // RNA-DNA hybrid ribonuclease activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 47.45 138.22 2.88 0.02 0.04 -4.51
217796_s_at 217796_s_at NM_017921 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017921.1 /DEF=Homo sapiens hypothetical protein FLJ20657 (FLJ20657), mRNA. /FEA=mRNA /GEN=FLJ20657 /PROD=hypothetical protein FLJ20657 /DB_XREF=gi:8923608 /UG=Hs.164256 hypothetical protein FLJ20657 /FL=gb:NM_017921.1 NM_017921 nuclear protein localization 4 homolog (S. cerevisiae) NPLOC4 55666 NM_017921 0007030 // Golgi organization // inferred from sequence or structural similarity /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0061025 // membrane fusion // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0042175 // nuclear outer membrane-endoplasmic reticulum membrane network // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 60.50 204.82 2.88 0.02 0.04 -4.51
209137_s_at 209137_s_at BC000263 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000263.1 /DEF=Homo sapiens, Similar to ubiquintin c-terminal hydrolase related polypeptide, clone MGC:2621, mRNA, complete cds. /FEA=mRNA /PROD=Similar to ubiquintin c-terminal hydrolaserelated polypeptide /DB_XREF=gi:12653004 /UG=Hs.78829 ubiquitin specific protease 10 /FL=gb:BC000263.1 BC000263 ubiquitin specific peptidase 10 USP10 9100 NM_001272075 /// NM_005153 /// NR_073577 /// NR_073578 /// XM_006721330 /// XM_006721331 /// XM_006721332 0006281 // DNA repair // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010506 // regulation of autophagy // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from mutant phenotype /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0002039 // p53 binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // inferred from mutant phenotype /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -66.25 214.97 -2.88 0.02 0.04 -4.51
204083_s_at 204083_s_at NM_003289 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003289.1 /DEF=Homo sapiens tropomyosin 2 (beta) (TPM2), mRNA. /FEA=mRNA /GEN=TPM2 /PROD=tropomyosin 2 (beta) /DB_XREF=gi:4507648 /UG=Hs.300772 tropomyosin 2 (beta) /FL=gb:M75165.1 gb:M12125.1 gb:M74817.1 gb:NM_003289.1 NM_003289 tropomyosin 2 (beta) TPM2 7169 NM_001145822 /// NM_003289 /// NM_213674 /// XM_005251566 /// XM_005251567 /// XM_005251568 /// XM_005251569 /// XM_005251570 /// XM_005251571 /// XM_005251572 0006936 // muscle contraction // traceable author statement /// 0030049 // muscle filament sliding // traceable author statement /// 0043462 // regulation of ATPase activity // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005862 // muscle thin filament tropomyosin // traceable author statement 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // traceable author statement 44.13 172.21 2.87 0.02 0.04 -4.51
204797_s_at 204797_s_at NM_004434 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004434.1 /DEF=Homo sapiens echinoderm microtubule-associated protein-like (EMAPL), mRNA. /FEA=mRNA /GEN=EMAPL /PROD=echinoderm microtubule-associated protein-like /DB_XREF=gi:4758267 /UG=Hs.12451 echinoderm microtubule-associated protein-like /FL=gb:U97018.1 gb:NM_004434.1 NM_004434 echinoderm microtubule associated protein like 1 EML1 2009 NM_001008707 /// NM_004434 /// XM_005267397 /// XM_005267398 /// XM_005267399 /// XM_005267400 /// XM_006720074 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0007052 // mitotic spindle organization // inferred from sequence or structural similarity /// 0007405 // neuroblast proliferation // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from mutant phenotype /// 0007420 // brain development // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0097431 // mitotic spindle pole // inferred from sequence or structural similarity /// 1990023 // mitotic spindle midzone // inferred from sequence or structural similarity 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0015631 // tubulin binding // inferred from direct assay 53.70 111.92 2.87 0.02 0.04 -4.51
219657_s_at 219657_s_at NM_016531 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016531.1 /DEF=Homo sapiens hBKLF for basic kruppel like factor (LOC51274), mRNA. /FEA=mRNA /GEN=LOC51274 /PROD=hBKLF for basic kruppel like factor /DB_XREF=gi:7706076 /UG=Hs.119640 hBKLF for basic kruppel like factor /FL=gb:AF285837.1 gb:AB024523.1 gb:NM_016531.1 NM_016531 Kruppel-like factor 3 (basic) KLF3 51274 NM_016531 /// XM_006714015 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 1901653 // cellular response to peptide // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -48.10 92.92 -2.87 0.02 0.04 -4.51
218335_x_at 218335_x_at NM_024309 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024309.1 /DEF=Homo sapiens hypothetical protein MGC4289 (MGC4289), mRNA. /FEA=mRNA /GEN=MGC4289 /PROD=hypothetical protein MGC4289 /DB_XREF=gi:13236543 /UG=Hs.288991 hypothetical protein MGC4289 /FL=gb:BC002740.1 gb:NM_024309.1 NM_024309 TNFAIP3 interacting protein 2 TNIP2 79155 NM_001161527 /// NM_001292016 /// NM_024309 /// XM_005248010 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0023035 // CD40 signaling pathway // inferred from sequence or structural similarity /// 0034134 // toll-like receptor 2 signaling pathway // inferred from sequence or structural similarity /// 0034138 // toll-like receptor 3 signaling pathway // inferred from sequence or structural similarity /// 0034162 // toll-like receptor 9 signaling pathway // inferred from sequence or structural similarity /// 0043032 // positive regulation of macrophage activation // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050871 // positive regulation of B cell activation // inferred from sequence or structural similarity /// 0070498 // interleukin-1-mediated signaling pathway // inferred from sequence or structural similarity /// 0071222 // cellular response to lipopolysaccharide // inferred from sequence or structural similarity /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from direct assay /// 0031593 // polyubiquitin binding // inferred from direct assay -55.12 328.01 -2.87 0.02 0.04 -4.51
212509_s_at 212509_s_at BF968134 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF968134 /FEA=EST /DB_XREF=gi:12335349 /DB_XREF=est:602269121F1 /CLONE=IMAGE:4357349 /UG=Hs.250723 FK506 binding protein 12-rapamycin associated protein 1 BF968134 matrix-remodelling associated 7 MXRA7 439921 NM_001008528 /// NM_001008529 /// NM_198530 /// XM_005257382 /// XM_005257383 /// XM_005257384 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 239.67 865.79 2.87 0.02 0.04 -4.51
34187_at 34187_at D28483 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. D28483:Human scr3 mRNA for RNA binding protein SCR3, complete cds /cds=(16,1239) /gb=D28483 /gi=520589 /ug=Hs.20938 /len=1509 D28483 RNA binding motif, single stranded interacting protein 2 RBMS2 5939 NM_002898 /// XM_005269059 /// XM_005269060 /// XM_005269061 /// XM_005269066 /// XM_006719541 /// XM_006719542 /// XM_006719543 /// XM_006719544 /// XM_006719545 0006396 // RNA processing // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -42.27 75.44 -2.86 0.02 0.04 -4.51
211105_s_at 211105_s_at U80918 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U80918.1 /DEF=Homo sapiens transcription factor (NF-ATcC) mRNA, complete cds. /FEA=mRNA /GEN=NF-ATcC /PROD=transcription factor /DB_XREF=gi:4098860 /UG=Hs.96149 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 /FL=gb:U80918.1 U80918 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 NFATC1 4772 NM_001278669 /// NM_001278670 /// NM_001278672 /// NM_001278673 /// NM_001278675 /// NM_006162 /// NM_172387 /// NM_172388 /// NM_172389 /// NM_172390 /// XM_006722477 /// XM_006722478 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001085 // RNA polymerase II transcription factor binding // inferred from sequence or structural similarity /// 0001205 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005528 // FK506 binding // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0048273 // mitogen-activated protein kinase p38 binding // inferred from sequence or structural similarity -34.40 73.45 -2.86 0.02 0.04 -4.51
208787_at 208787_at BC003375 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003375.1 /DEF=Homo sapiens, mitochondrial ribosomal protein L3, clone MGC:5219, mRNA, complete cds. /FEA=mRNA /PROD=mitochondrial ribosomal protein L3 /DB_XREF=gi:13097224 /UG=Hs.79086 mitochondrial ribosomal protein L3 /FL=gb:BC003375.1 gb:NM_007208.1 BC003375 mitochondrial ribosomal protein L3 MRPL3 11222 NM_007208 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 78.15 476.25 2.86 0.02 0.04 -4.51
213360_s_at 213360_s_at AA514622 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA514622 /FEA=EST /DB_XREF=gi:2254222 /DB_XREF=est:nf55c12.s1 /CLONE=IMAGE:923830 /UG=Hs.295112 KIAA0618 gene product AA514622 POM121 transmembrane nucleoporin /// POM121 transmembrane nucleoporin C POM121 /// POM121C 9883 /// 100101267 NM_001099415 /// NM_001257190 /// NM_172020 /// XM_005250082 /// XM_005250726 /// XM_005250727 /// XM_005250728 /// XM_005250729 /// XM_005250730 /// XM_005250731 /// XM_005250732 /// XM_006716194 /// XM_006716195 /// XM_006716196 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0032259 // methylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -95.25 574.62 -2.86 0.02 0.04 -4.51
201501_s_at 201501_s_at NM_002092 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002092.1 /DEF=Homo sapiens G-rich RNA sequence binding factor 1 (GRSF1), mRNA. /FEA=mRNA /GEN=GRSF1 /PROD=G-rich RNA sequence binding factor 1 /DB_XREF=gi:4504160 /UG=Hs.79295 G-rich RNA sequence binding factor 1 /FL=gb:NM_002092.1 gb:U07231.1 NM_002092 G-rich RNA sequence binding factor 1 GRSF1 2926 NM_001098477 /// NM_002092 /// XM_005265681 /// XM_005265685 0006378 // mRNA polyadenylation // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003729 // mRNA binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 40.80 109.97 2.86 0.02 0.04 -4.51
200972_at 200972_at BC000704 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000704.1 /DEF=Homo sapiens, tetraspan 3, clone MGC:965, mRNA, complete cds. /FEA=mRNA /PROD=tetraspan 3 /DB_XREF=gi:12653830 /UG=Hs.100090 tetraspan 3 /FL=gb:BC000704.1 gb:BC004280.1 gb:AF054840.1 gb:NM_005724.1 gb:AF133423.1 BC000704 tetraspanin 3 TSPAN3 10099 NM_001168412 /// NM_005724 /// NM_198902 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 62.08 715.14 2.86 0.02 0.05 -4.51
201033_x_at 201033_x_at NM_001002 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001002.1 /DEF=Homo sapiens ribosomal protein, large, P0 (RPLP0), mRNA. /FEA=mRNA /GEN=RPLP0 /PROD=ribosomal protein, large, P0 /DB_XREF=gi:4506666 /UG=Hs.73742 ribosomal protein, large, P0 /FL=gb:BC000345.1 gb:BC000752.1 gb:BC001127.1 gb:AF274958.1 gb:BC001834.1 gb:M17885.1 gb:NM_001002.1 NM_001002 ribosomal protein, large, P0 RPLP0 6175 NM_001002 /// NM_053275 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -918.93 4691.34 -2.86 0.02 0.05 -4.51
204222_s_at 204222_s_at NM_006851 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006851.1 /DEF=Homo sapiens glioma pathogenesis-related protein (RTVP1), mRNA. /FEA=mRNA /GEN=RTVP1 /PROD=glioma pathogenesis-related protein /DB_XREF=gi:5803150 /UG=Hs.64639 glioma pathogenesis-related protein /FL=gb:U16307.1 gb:NM_006851.1 NM_006851 GLI pathogenesis-related 1 GLIPR1 11010 NM_006851 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 37.45 197.58 2.86 0.02 0.05 -4.51
202104_s_at 202104_s_at NM_003119 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003119.1 /DEF=Homo sapiens spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive) (SPG7), mRNA. /FEA=mRNA /GEN=SPG7 /PROD=paraplegin /DB_XREF=gi:4507172 /UG=Hs.296847 spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive) /FL=gb:NM_003119.1 NM_003119 uncharacterized LOC101930112 /// spastic paraplegia 7 (pure and complicated autosomal recessive) LOC101930112 /// SPG7 6687 /// 101930112 NM_003119 /// NM_199367 /// XM_005256321 /// XM_006721264 /// XM_006721265 /// XM_006721266 /// XR_253599 0006508 // proteolysis // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0008089 // anterograde axon cargo transport // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // non-traceable author statement /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // traceable author statement -47.50 128.25 -2.86 0.02 0.05 -4.51
210691_s_at 210691_s_at AF275803 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF275803.1 /DEF=Homo sapiens PNAS-107 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-107 /DB_XREF=gi:10834769 /UG=Hs.27258 calcyclin binding protein /FL=gb:AF275803.1 AF275803 calcyclin binding protein CACYBP 27101 NM_001007214 /// NM_014412 /// XM_005245092 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0060416 // response to growth hormone // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030877 // beta-catenin destruction complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 41.38 75.56 2.86 0.02 0.05 -4.51
201518_at 201518_at NM_006807 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006807.1 /DEF=Homo sapiens chromobox homolog 1 (Drosophila HP1 beta) (CBX1), mRNA. /FEA=mRNA /GEN=CBX1 /PROD=chromobox homolog 1 (Drosophila HP1 beta) /DB_XREF=gi:5803075 /UG=Hs.77254 chromobox homolog 1 (Drosophila HP1 beta) /FL=gb:U35451.1 gb:BC002609.1 gb:NM_006807.1 NM_006807 chromobox homolog 1 CBX1 10951 NM_001127228 /// NM_006807 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from direct assay /// 0000785 // chromatin // inferred from direct assay /// 0001939 // female pronucleus // inferred from electronic annotation /// 0001940 // male pronucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005720 // nuclear heterochromatin // traceable author statement /// 0005721 // centromeric heterochromatin // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0010369 // chromocenter // inferred from electronic annotation 0003682 // chromatin binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 1990226 // histone methyltransferase binding // inferred from physical interaction 52.30 305.60 2.86 0.02 0.05 -4.51
201993_x_at 201993_x_at NM_005463 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005463.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein D-like (HNRPDL), mRNA. /FEA=mRNA /GEN=HNRPDL /PROD=heterogeneous nuclear ribonucleoprotein D-like /DB_XREF=gi:4885422 /UG=Hs.170311 heterogeneous nuclear ribonucleoprotein D-like /FL=gb:AB017019.1 gb:NM_005463.1 NM_005463 heterogeneous nuclear ribonucleoprotein D-like HNRNPDL 9987 NM_001207000 /// NM_005463 /// NM_031372 /// NR_003249 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // non-traceable author statement /// 0010468 // regulation of gene expression // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0008143 // poly(A) binding // inferred from direct assay /// 0034046 // poly(G) binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -90.05 509.35 -2.85 0.02 0.05 -4.51
208705_s_at 208705_s_at BG481972 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG481972 /FEA=EST /DB_XREF=gi:13414251 /DB_XREF=est:602526894F1 /CLONE=IMAGE:4650406 /UG=Hs.286236 eukaryotic translation initiation factor 5 /FL=gb:AL080102.1 BG481972 eukaryotic translation initiation factor 5 EIF5 1983 NM_001969 /// NM_183004 0006184 // GTP catabolic process // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // non-traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 86.75 752.67 2.85 0.02 0.05 -4.51
212773_s_at 212773_s_at BG165094 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG165094 /FEA=EST /DB_XREF=gi:12671797 /DB_XREF=est:602343902F1 /CLONE=IMAGE:4453945 /UG=Hs.75187 translocase of outer mitochondrial membrane 20 (yeast) homolog BG165094 translocase of outer mitochondrial membrane 20 homolog (yeast) TOMM20 9804 NM_014765 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from direct assay /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071806 // protein transmembrane transport // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // non-traceable author statement /// 0005742 // mitochondrial outer membrane translocase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay -98.22 357.54 -2.85 0.02 0.05 -4.51
200868_s_at 200868_s_at NM_018683 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018683.1 /DEF=Homo sapiens zinc finger protein 313 (ZNF313), mRNA. /FEA=mRNA /GEN=ZNF313 /PROD=zinc finger protein 313 /DB_XREF=gi:8923897 /UG=Hs.10590 zinc finger protein 313 /FL=gb:AF265215.1 gb:NM_018683.1 NM_018683 ring finger protein 114 RNF114 55905 NM_018683 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -45.33 164.21 -2.85 0.02 0.05 -4.51
201857_at 201857_at NM_016107 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016107.1 /DEF=Homo sapiens M-phase phosphoprotein homolog (LOC51663), mRNA. /FEA=mRNA /GEN=LOC51663 /PROD=M-phase phosphoprotein homolog /DB_XREF=gi:7706372 /UG=Hs.173518 M-phase phosphoprotein homolog /FL=gb:BC000376.1 gb:BC000746.1 gb:AF100742.1 gb:NM_016107.1 NM_016107 zinc finger RNA binding protein ZFR 51663 NM_016107 /// XM_006714477 /// XR_427659 0007275 // multicellular organismal development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -84.75 463.25 -2.85 0.02 0.05 -4.51
201395_at 201395_at NM_005778 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005778.1 /DEF=Homo sapiens RNA binding motif protein 5 (RBM5), mRNA. /FEA=mRNA /GEN=RBM5 /PROD=RNA binding motif protein 5 /DB_XREF=gi:5032030 /UG=Hs.201675 RNA binding motif protein 5 /FL=gb:U23946.1 gb:BC002957.1 gb:AF091263.1 gb:NM_005778.1 NM_005778 RNA binding motif protein 5 RBM5 10181 NM_005778 /// NR_036627 /// XM_006712917 /// XM_006712918 /// XM_006712919 /// XM_006712920 /// XR_427245 0000245 // spliceosomal complex assembly // inferred from direct assay /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -94.75 337.38 -2.85 0.02 0.05 -4.51
202224_at 202224_at BF304695 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF304695 /FEA=EST /DB_XREF=gi:11251580 /DB_XREF=est:601888248F1 /CLONE=IMAGE:4122466 /UG=Hs.306088 v-crk avian sarcoma virus CT10 oncogene homolog /FL=gb:D10656.1 gb:NM_016823.1 BF304695 v-crk avian sarcoma virus CT10 oncogene homolog CRK 1398 NM_005206 /// NM_016823 0000186 // activation of MAPKK activity // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from direct assay /// 0032956 // regulation of actin cytoskeleton organization // inferred from direct assay /// 0035020 // regulation of Rac protein signal transduction // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred by curator /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from physical interaction /// 0045309 // protein phosphorylated amino acid binding // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from physical interaction 46.27 179.96 2.85 0.02 0.05 -4.51
213398_s_at 213398_s_at AI347090 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI347090 /FEA=EST /DB_XREF=gi:4084296 /DB_XREF=est:qp60d11.x1 /CLONE=IMAGE:1927413 /UG=Hs.7911 KIAA0323 protein AI347090 short chain dehydrogenase/reductase family 39U, member 1 SDR39U1 56948 NM_001290292 /// NM_001290293 /// NM_020195 /// XM_005267873 /// XM_006720207 0044237 // cellular metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 30.42 91.79 2.85 0.02 0.05 -4.51
204853_at 204853_at NM_006190 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006190.1 /DEF=Homo sapiens origin recognition complex, subunit 2 (yeast homolog)-like (ORC2L), mRNA. /FEA=mRNA /GEN=ORC2L /PROD=origin recognition complex, subunit 2 (yeasthomolog)-like /DB_XREF=gi:5453829 /UG=Hs.41694 origin recognition complex, subunit 2 (yeast homolog)-like /FL=gb:U27459.1 gb:U40268.2 gb:NM_006190.1 NM_006190 origin recognition complex, subunit 2 ORC2 4999 NM_006190 /// NR_033915 /// XM_006712555 /// XR_427088 /// XR_427089 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006270 // DNA replication initiation // traceable author statement 0000785 // chromatin // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000808 // origin recognition complex // inferred from direct assay /// 0000939 // condensed chromosome inner kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005664 // nuclear origin of replication recognition complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0003688 // DNA replication origin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 39.37 64.59 2.85 0.02 0.05 -4.51
201237_at 201237_at AV685920 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV685920 /FEA=EST /DB_XREF=gi:10287783 /DB_XREF=est:AV685920 /CLONE=GKCEGD05 /UG=Hs.75546 capping protein (actin filament) muscle Z-line, alpha 2 /FL=gb:BC005338.1 gb:NM_006136.1 gb:U03269.1 AV685920 capping protein (actin filament) muscle Z-line, alpha 2 CAPZA2 830 NM_006136 0006461 // protein complex assembly // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0051693 // actin filament capping // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071203 // WASH complex // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 54.77 284.24 2.84 0.02 0.05 -4.51
218356_at 218356_at NM_013393 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013393.1 /DEF=Homo sapiens cell division protein FtsJ (FJH1), mRNA. /FEA=mRNA /GEN=FJH1 /PROD=cell division protein FtsJ /DB_XREF=gi:7019376 /UG=Hs.279877 cell division protein FtsJ /FL=gb:AF093415.1 gb:NM_013393.1 NM_013393 FtsJ RNA methyltransferase homolog 2 (E. coli) FTSJ2 29960 NM_013393 /// NM_177442 0001510 // RNA methylation // inferred from electronic annotation /// 0006364 // rRNA processing // non-traceable author statement /// 0008283 // cell proliferation // non-traceable author statement /// 0031167 // rRNA methylation // non-traceable author statement /// 0032259 // methylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008650 // rRNA (uridine-2'-O-)-methyltransferase activity // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation 31.60 76.25 2.84 0.02 0.05 -4.51
212675_s_at 212675_s_at AB011154 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011154.1 /DEF=Homo sapiens mRNA for KIAA0582 protein, partial cds. /FEA=mRNA /GEN=KIAA0582 /PROD=KIAA0582 protein /DB_XREF=gi:3043687 /UG=Hs.79507 KIAA0582 protein AB011154 centrosomal protein 68kDa CEP68 23177 NM_015147 /// XM_005264218 /// XM_005264219 0010457 // centriole-centriole cohesion // inferred from mutant phenotype /// 0033365 // protein localization to organelle // inferred from mutant phenotype /// 0051297 // centrosome organization // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction 30.82 63.66 2.84 0.02 0.05 -4.51
210276_s_at 210276_s_at AF281030 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF281030.1 /DEF=Homo sapiens Tara mRNA, complete cds. /FEA=mRNA /PROD=Tara /DB_XREF=gi:12006357 /UG=Hs.40342 putative nuclear protein /FL=gb:AF281030.1 gb:BC003618.1 AF281030 nucleolar protein 12 /// TRIO and F-actin binding protein NOL12 /// TRIOBP 11078 /// 79159 NM_001039141 /// NM_007032 /// NM_024313 /// NM_138632 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0030047 // actin modification // non-traceable author statement /// 0051016 // barbed-end actin filament capping // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // non-traceable author statement /// 0030496 // midbody // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // non-traceable author statement /// 0019843 // rRNA binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045159 // myosin II binding // non-traceable author statement /// 0051015 // actin filament binding // inferred from direct assay 58.55 148.00 2.84 0.02 0.05 -4.51
212572_at 212572_at AW779556 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW779556 /FEA=EST /DB_XREF=gi:7794159 /DB_XREF=est:hn81f05.x1 /CLONE=IMAGE:3034305 /UG=Hs.184523 KIAA0965 protein AW779556 serine/threonine kinase 38 like STK38L 23012 NM_015000 /// XM_005253342 /// XM_005253343 /// XM_006719058 /// XM_006719059 0006468 // protein phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0051128 // regulation of cellular component organization // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 65.20 180.12 2.84 0.02 0.05 -4.51
203839_s_at 203839_s_at NM_005781 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005781.2 /DEF=Homo sapiens activated p21cdc42Hs kinase (ACK1), mRNA. /FEA=mRNA /GEN=ACK1 /PROD=activated p21cdc42Hs kinase /DB_XREF=gi:8922074 /UG=Hs.153937 activated p21cdc42Hs kinase /FL=gb:L13738.2 gb:NM_005781.2 NM_005781 tyrosine kinase, non-receptor, 2 TNK2 10188 NM_001010938 /// NM_005781 /// XM_005269268 /// XM_005269269 /// XM_005269270 /// XM_005269271 /// XM_005269272 /// XM_005269273 /// XM_005269274 /// XM_005269275 /// XM_006713460 /// XM_006713461 /// XM_006713462 /// XM_006713463 /// XM_006713464 /// XM_006713465 /// XM_006713466 /// XM_006713467 /// XM_006713468 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0016310 // phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 2000369 // regulation of clathrin-mediated endocytosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0005905 // coated pit // inferred from direct assay /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070436 // Grb2-EGFR complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005095 // GTPase inhibitor activity // traceable author statement /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050699 // WW domain binding // inferred from sequence or structural similarity 39.45 51.33 2.84 0.02 0.05 -4.51
200055_at 200055_at NM_006284 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006284.1 /DEF=Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30kD (TAF2H), mRNA. /FEA=mRNA /GEN=TAF2H /PROD=TATA box binding protein (TBP)-associatedfactor, RNA polymerase II, H, 30kD /DB_XREF=gi:5454105 /UG=Hs.89657 TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30kD /FL=gb:NM_006284.1 gb:U13991.1 NM_006284 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa TAF10 6881 NM_006284 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred by curator /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred by curator /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016578 // histone deubiquitination // inferred from direct assay /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay 0000125 // PCAF complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030914 // STAGA complex // inferred from direct assay /// 0033276 // transcription factor TFTC complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from direct assay /// 0070063 // RNA polymerase binding // inferred from direct assay 107.15 381.88 2.84 0.02 0.05 -4.51
207266_x_at 207266_x_at NM_016837 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016837.1 /DEF=Homo sapiens RNA binding motif, single stranded interacting protein 1 (RBMS1), transcript variant MSSP-3, mRNA. /FEA=mRNA /GEN=RBMS1 /PROD=RNA binding motif, single stranded interactingprotein 1, isoform e /DB_XREF=gi:8400719 /UG=Hs.241567 RNA binding motif, single stranded interacting protein 1 /FL=gb:NM_016837.1 NM_016837 RNA binding motif, single stranded interacting protein 1 RBMS1 5937 NM_002897 /// NM_016836 /// NM_016839 /// XM_005246737 /// XM_005246738 /// XM_005246739 /// XM_005246740 /// XM_005246741 /// XM_006712671 /// XM_006712672 /// XM_006712673 /// XM_006712674 /// XM_006712675 0006260 // DNA replication // non-traceable author statement /// 0006396 // RNA processing // traceable author statement 0005634 // nucleus // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // non-traceable author statement /// 0003697 // single-stranded DNA binding // non-traceable author statement /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 77.58 428.59 2.84 0.02 0.05 -4.51
219557_s_at 219557_s_at NM_020645 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020645.1 /DEF=Homo sapiens chromosome 11 open reading frame 14 (C11ORF14), mRNA. /FEA=mRNA /GEN=C11ORF14 /PROD=chromosome 11 open reading frame 14 /DB_XREF=gi:11034818 /UG=Hs.32017 chromosome 11 open reading frame 14 /FL=gb:NM_020645.1 NM_020645 nuclear receptor interacting protein 3 NRIP3 56675 NM_020645 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation 36.80 111.17 2.84 0.02 0.05 -4.51
218542_at 218542_at NM_018131 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018131.1 /DEF=Homo sapiens hypothetical protein FLJ10540 (FLJ10540), mRNA. /FEA=mRNA /GEN=FLJ10540 /PROD=hypothetical protein FLJ10540 /DB_XREF=gi:8922501 /UG=Hs.14559 hypothetical protein FLJ10540 /FL=gb:NM_018131.1 NM_018131 centrosomal protein 55kDa CEP55 55165 NM_001127182 /// NM_018131 /// XM_006717909 0000281 // mitotic cytokinesis // inferred from genetic interaction /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0045184 // establishment of protein localization // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005814 // centriole // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0045171 // intercellular bridge // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 65.28 169.66 2.83 0.02 0.05 -4.51
211487_x_at 211487_x_at BC004886 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004886.1 /DEF=Homo sapiens, ribosomal protein S17, clone MGC:11144, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein S17 /DB_XREF=gi:13436139 /UG=Hs.5174 ribosomal protein S17 /FL=gb:BC004886.1 BC004886 ribosomal protein S17 RPS17 6218 NM_001021 /// NM_001199057 /// NR_111943 /// NR_111944 0000028 // ribosomal small subunit assembly // not recorded /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // non-traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034101 // erythrocyte homeostasis // inferred from mutant phenotype /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -893.18 3700.96 -2.83 0.02 0.05 -4.51
208680_at 208680_at L19184 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L19184.1 /DEF=Human natural killer cell enhancing factor (NKEFA) mRNA, complete cds. /FEA=mRNA /GEN=NKEFA /PROD=enhancer protein /DB_XREF=gi:440305 /UG=Hs.180909 peroxiredoxin 1 /FL=gb:L19184.1 gb:NM_002574.1 L19184 peroxiredoxin 1 PRDX1 5052 NM_001202431 /// NM_002574 /// NM_181696 /// NM_181697 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0001501 // skeletal system development // traceable author statement /// 0001895 // retina homeostasis // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0032872 // regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0034101 // erythrocyte homeostasis // inferred from electronic annotation /// 0042267 // natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0042345 // regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005782 // peroxisomal matrix // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004601 // peroxidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008379 // thioredoxin peroxidase activity // inferred from direct assay /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 316.70 2226.62 2.83 0.02 0.05 -4.51
201013_s_at 201013_s_at AA902652 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA902652 /FEA=EST /DB_XREF=gi:3037775 /DB_XREF=est:ok71a12.s1 /CLONE=IMAGE:1519390 /UG=Hs.117950 multifunctional polypeptide similar to SAICAR synthetase and AIR carboxylase /FL=gb:NM_006452.1 AA902652 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase PAICS 10606 NM_001079524 /// NM_001079525 /// NM_006452 /// XM_006714035 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009113 // purine nucleobase biosynthetic process // traceable author statement /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004638 // phosphoribosylaminoimidazole carboxylase activity // traceable author statement /// 0004639 // phosphoribosylaminoimidazolesuccinocarboxamide synthase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0034023 // 5-(carboxyamino)imidazole ribonucleotide mutase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 126.50 380.02 2.83 0.02 0.05 -4.51
208782_at 208782_at BC000055 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000055.1 /DEF=Homo sapiens, follistatin-like 1, clone MGC:1993, mRNA, complete cds. /FEA=mRNA /PROD=follistatin-like 1 /DB_XREF=gi:12652618 /UG=Hs.296267 follistatin-like 1 /FL=gb:BC000055.1 gb:U06863.1 BC000055 follistatin-like 1 FSTL1 11167 NM_007085 0030509 // BMP signaling pathway // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation -216.70 1077.70 -2.83 0.02 0.05 -4.51
218650_at 218650_at NM_022775 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022775.1 /DEF=Homo sapiens hypothetical protein FLJ22127 (FLJ22127), mRNA. /FEA=mRNA /GEN=FLJ22127 /PROD=hypothetical protein FLJ22127 /DB_XREF=gi:12232458 /UG=Hs.59457 hypothetical protein FLJ22127 /FL=gb:NM_022775.1 NM_022775 DGCR8 microprocessor complex subunit /// microRNA 1306 DGCR8 /// MIR1306 54487 /// 100302197 NM_001190326 /// NM_022720 /// NR_031706 /// XM_006724268 0010467 // gene expression // traceable author statement /// 0031053 // primary miRNA processing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 34.75 76.72 2.83 0.02 0.05 -4.51
211997_x_at 211997_x_at NM_005324 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005324.1 /DEF=Homo sapiens H3 histone, family 3B (H3.3B) (H3F3B), mRNA. /FEA=CDS /GEN=H3F3B /PROD=H3 histone, family 3B (H3.3B) /DB_XREF=gi:4885384 /UG=Hs.180877 H3 histone, family 3B (H3.3B) /FL=gb:NM_005324.1 NM_005324 H3 histone, family 3A /// H3 histone, family 3B (H3.3B) /// microRNA 4738 H3F3A /// H3F3B /// MIR4738 3020 /// 3021 /// 100616282 NM_002107 /// NM_005324 /// NR_039892 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -644.38 2226.29 -2.83 0.02 0.05 -4.51
217872_at 217872_at NM_017916 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017916.1 /DEF=Homo sapiens hypothetical protein FLJ20643 (FLJ20643), mRNA. /FEA=mRNA /GEN=FLJ20643 /PROD=hypothetical protein FLJ20643 /DB_XREF=gi:8923597 /UG=Hs.5245 hypothetical protein FLJ20643 /FL=gb:BC001108.1 gb:NM_017916.1 NM_017916 PIH1 domain containing 1 PIH1D1 55011 NM_017916 /// XM_006723254 /// XR_243941 /// XR_430202 /// XR_430203 0000492 // box C/D snoRNP assembly // inferred from mutant phenotype /// 0030855 // epithelial cell differentiation // inferred from expression pattern 0070761 // pre-snoRNP complex // inferred from direct assay -47.73 224.31 -2.83 0.02 0.05 -4.51
212967_x_at 212967_x_at AW148801 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW148801 /FEA=EST /DB_XREF=gi:6196697 /DB_XREF=est:xf04e10.x1 /CLONE=IMAGE:2617098 /UG=Hs.179662 nucleosome assembly protein 1-like 1 AW148801 nucleosome assembly protein 1-like 1 NAP1L1 4673 NM_004537 /// NM_139207 /// XM_005268895 /// XM_005268896 /// XM_006719422 /// XM_006719423 /// XM_006719424 /// XM_006719425 /// XR_245930 /// XR_245931 /// XR_245932 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -204.12 1469.64 -2.83 0.02 0.05 -4.51
212383_at 212383_at AL096733 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL096733.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434E071 (from clone DKFZp434E071). /FEA=mRNA /DB_XREF=gi:5419866 /UG=Hs.267871 ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1A (110116kD) AL096733 ATPase, H+ transporting, lysosomal V0 subunit a1 ATP6V0A1 535 NM_001130020 /// NM_001130021 /// NM_005177 /// XM_005257459 /// XM_005257461 /// XM_005257463 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0033572 // transferrin transport // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0000220 // vacuolar proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from physical interaction 44.02 119.29 2.83 0.02 0.05 -4.51
212274_at 212274_at AV705559 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV705559 /FEA=EST /DB_XREF=gi:10722858 /DB_XREF=est:AV705559 /CLONE=ADBAPE04 /UG=Hs.81412 lipin 1 AV705559 lipin 1 LPIN1 23175 NM_001261427 /// NM_001261428 /// NM_001261429 /// NM_145693 /// XM_006711869 /// XM_006711870 /// XM_006711871 /// XM_006711872 /// XM_006711873 /// XM_006711874 /// XM_006711875 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000266 // mitochondrial fission // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006642 // triglyceride mobilization // inferred from sequence or structural similarity /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006646 // phosphatidylethanolamine biosynthetic process // traceable author statement /// 0006656 // phosphatidylcholine biosynthetic process // traceable author statement /// 0009062 // fatty acid catabolic process // inferred from sequence or structural similarity /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031529 // ruffle organization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045598 // regulation of fat cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005634 // nucleus // inferred from sequence or structural similarity /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from sequence or structural similarity 0001085 // RNA polymerase II transcription factor binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042975 // peroxisome proliferator activated receptor binding // inferred from electronic annotation 39.43 146.66 2.83 0.02 0.05 -4.51
204405_x_at 204405_x_at NM_014473 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014473.1 /DEF=Homo sapiens putative dimethyladenosine transferase (HSA9761), mRNA. /FEA=mRNA /GEN=HSA9761 /PROD=putative dimethyladenosine transferase /DB_XREF=gi:7657197 /UG=Hs.125819 putative dimethyladenosine transferase /FL=gb:AF102147.1 gb:NM_014473.1 NM_014473 DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae) DIMT1 27292 NM_014473 0000154 // rRNA modification // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016433 // rRNA (adenine) methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0052909 // 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity // inferred from electronic annotation 85.88 265.44 2.82 0.02 0.05 -4.51
200000_s_at 200000_s_at NM_006445 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006445.1 /DEF=Homo sapiens U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p (PRP8), mRNA. /FEA=mRNA /GEN=PRP8 /PROD=U5 snRNP-specific protein (220 kD), ortholog ofS. cerevisiae Prp8p /DB_XREF=gi:5453983 /UG=Hs.181368 U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p /FL=gb:AB007510.1 gb:AF092565.1 gb:NM_006445.1 NM_006445 pre-mRNA processing factor 8 PRPF8 10594 NM_006445 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005682 // U5 snRNP // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017070 // U6 snRNA binding // inferred from electronic annotation /// 0030623 // U5 snRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 84.17 357.46 2.82 0.02 0.05 -4.51
202054_s_at 202054_s_at NM_000382 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000382.1 /DEF=Homo sapiens aldehyde dehydrogenase 3 family, member A2 (ALDH3A2), mRNA. /FEA=mRNA /GEN=ALDH3A2 /PROD=aldehyde dehydrogenase 3A2 /DB_XREF=gi:4557302 /UG=Hs.159608 aldehyde dehydrogenase 3 family, member A2 /FL=gb:L47162.1 gb:U46689.1 gb:NM_000382.1 NM_000382 aldehyde dehydrogenase 3 family, member A2 ALDH3A2 224 NM_000382 /// NM_001031806 0006081 // cellular aldehyde metabolic process // inferred from direct assay /// 0006081 // cellular aldehyde metabolic process // non-traceable author statement /// 0006714 // sesquiterpenoid metabolic process // inferred from direct assay /// 0007417 // central nervous system development // inferred from mutant phenotype /// 0007422 // peripheral nervous system development // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008218 // bioluminescence // inferred from electronic annotation /// 0008544 // epidermis development // inferred from mutant phenotype /// 0033306 // phytol metabolic process // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from direct assay /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from mutant phenotype /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046577 // long-chain-alcohol oxidase activity // inferred from direct assay /// 0050061 // long-chain-aldehyde dehydrogenase activity // inferred from direct assay /// 0052814 // medium-chain-aldehyde dehydrogenase activity // inferred from direct assay 33.42 28.46 2.82 0.02 0.05 -4.51
214507_s_at 214507_s_at NM_014285 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_014285.1 /DEF=Homo sapiens homolog of Yeast RRP4 (ribosomal RNA processing 4), 3-5-exoribonuclease (RRP4), mRNA. /FEA=CDS /GEN=RRP4 /PROD=homolog of Yeast RRP4 (ribosomal RNA processing4), 3-5-exoribonuclease /DB_XREF=gi:7657527 /UG=Hs.211973 homolog of Yeast RRP4 (ribosomal RNA processing 4), 3-5-exoribonuclease /FL=gb:NM_014285.1 NM_014285 exosome component 2 EXOSC2 23404 NM_001282708 /// NM_001282709 /// NM_014285 /// NR_104230 /// XM_005272176 /// XM_006717020 /// XM_006717021 /// XM_006717022 /// XM_006717023 /// XM_006717024 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // traceable author statement 0000178 // exosome (RNase complex) // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation 0000175 // 3'-5'-exoribonuclease activity // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004532 // exoribonuclease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008312 // 7S RNA binding // traceable author statement 31.30 38.80 2.82 0.02 0.05 -4.51
218009_s_at 218009_s_at NM_003981 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003981.1 /DEF=Homo sapiens protein regulator of cytokinesis 1 (PRC1), mRNA. /FEA=mRNA /GEN=PRC1 /PROD=protein regulator of cytokinesis 1 /DB_XREF=gi:4506038 /UG=Hs.5101 protein regulator of cytokinesis 1 /FL=gb:BC003138.1 gb:AF044588.1 gb:NM_003981.1 NM_003981 protein regulator of cytokinesis 1 PRC1 9055 NM_001267580 /// NM_003981 /// NM_199413 /// NM_199414 /// XM_005254986 /// XM_005254987 /// XM_006720759 /// XM_006720760 0000022 // mitotic spindle elongation // traceable author statement /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000910 // cytokinesis // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 60.15 255.97 2.82 0.02 0.05 -4.51
202115_s_at 202115_s_at NM_015658 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015658.1 /DEF=Homo sapiens DKFZP564C186 protein (DKFZP564C186), mRNA. /FEA=mRNA /GEN=DKFZP564C186 /PROD=DKFZP564C186 protein /DB_XREF=gi:7661605 /UG=Hs.134200 DKFZP564C186 protein /FL=gb:BC003555.1 gb:NM_015658.1 NM_015658 nucleolar complex associated 2 homolog (S. cerevisiae) NOC2L 26155 NM_015658 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002903 // negative regulation of B cell apoptotic process // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0031497 // chromatin assembly // inferred from direct assay /// 0032066 // nucleolus to nucleoplasm transport // inferred from direct assay /// 0034644 // cellular response to UV // inferred from direct assay /// 0035067 // negative regulation of histone acetylation // inferred from direct assay /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0003682 // chromatin binding // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031491 // nucleosome binding // inferred from direct assay /// 0042393 // histone binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070491 // repressing transcription factor binding // inferred from direct assay 29.30 106.90 2.81 0.02 0.05 -4.51
212403_at 212403_at AI749193 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI749193 /FEA=EST /DB_XREF=gi:5127457 /DB_XREF=est:at40e04.x1 /CLONE=IMAGE:2374494 /UG=Hs.17639 Homo sapiens ubiquitin protein ligase (UBE3B) mRNA, partial cds AI749193 ubiquitin protein ligase E3B UBE3B 89910 NM_001270449 /// NM_001270450 /// NM_001270451 /// NM_130466 /// NM_183414 /// NM_183415 /// XM_005253987 /// XM_006719681 /// XM_006719682 /// XR_429118 /// XR_429119 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein transferase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 35.40 104.88 2.81 0.02 0.05 -4.51
201273_s_at 201273_s_at NM_003133 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003133.1 /DEF=Homo sapiens signal recognition particle 9kD (SRP9), mRNA. /FEA=mRNA /GEN=SRP9 /PROD=signal recognition particle 9kD /DB_XREF=gi:4507216 /UG=Hs.75975 signal recognition particle 9kD /FL=gb:NM_003133.1 gb:U20998.1 NM_003133 signal recognition particle 9kDa SRP9 6726 NM_001130440 /// NM_003133 0006412 // translation // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045900 // negative regulation of translational elongation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005785 // signal recognition particle receptor complex // traceable author statement /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0005047 // signal recognition particle binding // traceable author statement /// 0008312 // 7S RNA binding // inferred from electronic annotation 207.50 969.92 2.81 0.02 0.05 -4.51
219288_at 219288_at NM_020685 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020685.1 /DEF=Homo sapiens HT021 (HT021), mRNA. /FEA=mRNA /GEN=HT021 /PROD=HT021 /DB_XREF=gi:10190735 /UG=Hs.47166 HT021 /FL=gb:NM_020685.1 gb:AF236158.1 NM_020685 chromosome 3 open reading frame 14 C3orf14 57415 NM_001291941 /// NM_001291942 /// NM_001291943 /// NM_020685 /// XM_005265338 /// XM_005265339 /// XM_005265340 34.37 101.69 2.81 0.02 0.05 -4.51
219392_x_at 219392_x_at NM_018304 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018304.1 /DEF=Homo sapiens hypothetical protein FLJ11029 (FLJ11029), mRNA. /FEA=mRNA /GEN=FLJ11029 /PROD=hypothetical protein FLJ11029 /DB_XREF=gi:8922831 /UG=Hs.274448 hypothetical protein FLJ11029 /FL=gb:NM_018304.1 NM_018304 proline rich 11 PRR11 55771 NM_018304 /// XR_243671 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 66.48 149.19 2.81 0.02 0.05 -4.51
201429_s_at 201429_s_at NM_000998 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000998.1 /DEF=Homo sapiens ribosomal protein L37a (RPL37A), mRNA. /FEA=mRNA /GEN=RPL37A /PROD=ribosomal protein L37a /DB_XREF=gi:4506642 /UG=Hs.5566 ribosomal protein L37a /FL=gb:BC000555.1 gb:L06499.1 gb:NM_000998.1 NM_000998 ribosomal protein L37a RPL37A 6168 NM_000998 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -1136.15 5087.57 -2.81 0.02 0.05 -4.51
214658_at 214658_at BG286537 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG286537 /FEA=EST /DB_XREF=gi:13039504 /DB_XREF=est:602382536F1 /CLONE=IMAGE:4500129 /UG=Hs.278391 CGI-109 protein BG286537 transmembrane emp24 protein transport domain containing 7 /// TMED7-TICAM2 readthrough TMED7 /// TMED7-TICAM2 51014 /// 100302736 NM_001164468 /// NM_001164469 /// NM_181836 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034144 // negative regulation of toll-like receptor 4 signaling pathway // inferred from direct assay /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from direct assay /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from mutant phenotype /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035669 // TRAM-dependent toll-like receptor 4 signaling pathway // inferred from direct assay /// 0035669 // TRAM-dependent toll-like receptor 4 signaling pathway // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype /// 0071650 // negative regulation of chemokine (C-C motif) ligand 5 production // inferred from mutant phenotype /// 0071651 // positive regulation of chemokine (C-C motif) ligand 5 production // inferred from mutant phenotype /// 2000494 // positive regulation of interleukin-18-mediated signaling pathway // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030126 // COPI vesicle coat // traceable author statement /// 0030127 // COPII vesicle coat // traceable author statement /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype 58.20 84.50 2.81 0.02 0.05 -4.51
200990_at 200990_at NM_005762 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005762.1 /DEF=Homo sapiens KRAB-associated protein 1 (TIF1B), mRNA. /FEA=mRNA /GEN=TIF1B /PROD=KRAB-associated protein 1 /DB_XREF=gi:5032178 /UG=Hs.228059 KRAB-associated protein 1 /FL=gb:BC004978.1 gb:U78773.1 gb:U95040.1 gb:NM_005762.1 NM_005762 tripartite motif containing 28 TRIM28 10155 NM_005762 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from direct assay /// 0045087 // innate immune response // inferred from direct assay /// 0045739 // positive regulation of DNA repair // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from direct assay /// 0060028 // convergent extension involved in axis elongation // inferred from electronic annotation /// 0060669 // embryonic placenta morphogenesis // inferred from electronic annotation /// 1902187 // negative regulation of viral release from host cell // inferred from direct assay 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0035851 // Krueppel-associated box domain binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from physical interaction 74.40 487.45 2.81 0.03 0.05 -4.51
200954_at 200954_at NM_001694 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001694.1 /DEF=Homo sapiens ATPase, H+ transporting, lysosomal (vacuolar proton pump) 16kD (ATP6L), mRNA. /FEA=mRNA /GEN=ATP6L /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) 16kD /DB_XREF=gi:4502312 /UG=Hs.76159 ATPase, H+ transporting, lysosomal (vacuolar proton pump) 16kD /FL=gb:BC004537.1 gb:M62762.1 gb:NM_001694.1 NM_001694 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c ATP6V0C 527 NM_001198569 /// NM_001694 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0033572 // transferrin transport // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // traceable author statement /// 0046961 // proton-transporting ATPase activity, rotational mechanism // traceable author statement 51.63 186.11 2.80 0.03 0.05 -4.51
203481_at 203481_at AI655902 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI655902 /FEA=EST /DB_XREF=gi:4739881 /DB_XREF=est:tt41c06.x1 /CLONE=IMAGE:2243338 /UG=Hs.93581 hypothetical protein FLJ10512 /FL=gb:NM_018121.1 AI655902 family with sequence similarity 178, member A FAM178A 55719 NM_001136123 /// NM_001243770 /// NM_018121 /// NM_144592 /// XM_005269965 /// XM_006717913 0000785 // chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay -31.03 58.44 -2.80 0.03 0.05 -4.51
206584_at 206584_at NM_015364 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015364.1 /DEF=Homo sapiens MD-2 protein (MD-2), mRNA. /FEA=mRNA /GEN=MD-2 /PROD=MD-2 protein /DB_XREF=gi:7662503 /UG=Hs.69328 MD-2 protein /FL=gb:AB018549.1 gb:NM_015364.1 gb:AF168121.1 NM_015364 lymphocyte antigen 96 LY96 23643 NM_001195797 /// NM_015364 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006968 // cellular defense response // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from direct assay /// 0031666 // positive regulation of lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0032497 // detection of lipopolysaccharide // inferred from direct assay /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0046696 // lipopolysaccharide receptor complex // inferred from direct assay 0001875 // lipopolysaccharide receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0015026 // coreceptor activity // traceable author statement 28.57 98.86 2.80 0.03 0.05 -4.51
209835_x_at 209835_x_at BC004372 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004372.1 /DEF=Homo sapiens, Similar to CD44 antigen (homing function and Indian blood group system), clone MGC:10468, mRNA, complete cds. /FEA=mRNA /PROD=Similar to CD44 antigen (homing function andIndian blood group system) /DB_XREF=gi:13325117 /UG=Hs.169610 CD44 antigen (homing function and Indian blood group system) /FL=gb:BC004372.1 BC004372 CD44 molecule (Indian blood group) CD44 960 NM_000610 /// NM_001001389 /// NM_001001390 /// NM_001001391 /// NM_001001392 /// NM_001202555 /// NM_001202556 /// NM_001202557 /// XM_005253231 /// XM_005253232 /// XM_005253233 /// XM_005253234 /// XM_005253235 /// XM_005253238 /// XM_005253239 /// XM_005253240 /// XM_006718388 /// XM_006718389 /// XM_006718390 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0002246 // wound healing involved in inflammatory response // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // non-traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // inferred from direct assay /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034116 // positive regulation of heterotypic cell-cell adhesion // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0051216 // cartilage development // inferred from expression pattern /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070487 // monocyte aggregation // inferred from mutant phenotype /// 1900625 // positive regulation of monocyte aggregation // inferred from mutant phenotype /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004415 // hyalurononglucosaminidase activity // inferred from direct assay /// 0004888 // transmembrane signaling receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0005540 // hyaluronic acid binding // inferred from direct assay /// 0005540 // hyaluronic acid binding // non-traceable author statement -68.05 99.00 -2.80 0.03 0.05 -4.51
212193_s_at 212193_s_at BE881529 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE881529 /FEA=EST /DB_XREF=gi:10330305 /DB_XREF=est:601490242F1 /CLONE=IMAGE:3892546 /UG=Hs.6214 KIAA0731 protein BE881529 La ribonucleoprotein domain family, member 1 LARP1 23367 NM_015315 /// NM_033551 /// XM_005268404 /// XM_005268406 /// XM_005268407 /// XM_005268408 /// XM_006714775 /// XM_006714776 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0016239 // positive regulation of macroautophagy // inferred from mutant phenotype /// 0031929 // TOR signaling // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031931 // TORC1 complex // inferred from direct assay 0000339 // RNA cap binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction /// 0008494 // translation activator activity // inferred from mutant phenotype /// 0031369 // translation initiation factor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay 47.00 177.97 2.80 0.03 0.05 -4.51
208656_s_at 208656_s_at AF135162 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF135162.1 /DEF=Homo sapiens cyclin I (CYC1) mRNA, complete cds. /FEA=mRNA /GEN=CYC1 /PROD=cyclin I /DB_XREF=gi:7259481 /UG=Hs.79933 cyclin I /FL=gb:D50310.1 gb:BC000420.1 gb:BC004975.1 gb:NM_006835.1 gb:AF135162.1 AF135162 cyclin I CCNI 10983 NM_006835 0007283 // spermatogenesis // non-traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation -239.85 885.02 -2.80 0.03 0.05 -4.51
209777_s_at 209777_s_at AF004354 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF004354.1 /DEF=Homo sapiens folate carrier mRNA, complete cds. /FEA=mRNA /PROD=folate carrier /DB_XREF=gi:2209134 /UG=Hs.84190 solute carrier family 19 (folate transporter), member 1 /FL=gb:U15939.1 gb:AF004354.1 gb:NM_003056.1 gb:U19720.1 gb:U17566.1 AF004354 uncharacterized LOC101928717 /// solute carrier family 19 (folate transporter), member 1 LOC101928717 /// SLC19A1 6573 /// 101928717 NM_001205206 /// NM_001205207 /// NM_003056 /// NM_194255 /// XM_005261164 /// XR_244332 /// XR_249004 /// XR_254049 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015884 // folic acid transport // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046655 // folic acid metabolic process // traceable author statement /// 0051958 // methotrexate transport // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0005542 // folic acid binding // inferred from electronic annotation /// 0008517 // folic acid transporter activity // inferred from electronic annotation /// 0008518 // reduced folate carrier activity // inferred from electronic annotation /// 0015350 // methotrexate transporter activity // inferred from electronic annotation 33.02 46.31 2.80 0.03 0.05 -4.51
45572_s_at 45572_s_at AW009695 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AW009695:ws86b07.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2504821 /clone_end=3' /gb=AW009695 /gi=5858473 /ug=Hs.238296 /len=491 AW009695 golgi-associated, gamma adaptin ear containing, ARF binding protein 1 GGA1 26088 NM_001001560 /// NM_001001561 /// NM_001172687 /// NM_001172688 /// NM_013365 /// XM_005261517 /// XM_005261518 /// XM_005261520 /// XM_005261522 /// XM_006724228 /// XM_006724229 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 89.32 334.91 2.80 0.03 0.05 -4.51
212156_at 212156_at AA812224 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA812224 /FEA=EST /DB_XREF=gi:2881835 /DB_XREF=est:ob84g11.s1 /CLONE=IMAGE:1338116 /UG=Hs.9452 KIAA0770 protein AA812224 vacuolar protein sorting 39 homolog (S. cerevisiae) VPS39 23339 NM_015289 /// XM_005254259 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030897 // HOPS complex // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 29.70 66.12 2.80 0.03 0.05 -4.51
221735_at 221735_at H04342 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:H04342 /FEA=EST /DB_XREF=gi:867275 /DB_XREF=est:yj10g11.s1 /CLONE=IMAGE:148388 /UG=Hs.109778 KIAA1449 protein H04342 WD repeat domain 48 WDR48 57599 NM_020839 /// XM_005265346 0016032 // viral process // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -59.17 42.41 -2.80 0.03 0.05 -4.51
222154_s_at 222154_s_at AK002064 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK002064.1 /DEF=Homo sapiens cDNA FLJ11202 fis, clone PLACE1007746. /FEA=mRNA /DB_XREF=gi:7023720 /UG=Hs.5297 DKFZP564A2416 protein AK002064 spermatogenesis associated, serine-rich 2-like SPATS2L 26010 NM_001100422 /// NM_001100423 /// NM_001100424 /// NM_001282735 /// NM_001282743 /// NM_001282744 /// NM_015535 /// XM_005246454 /// XM_005246456 /// XM_005246457 /// XM_005246458 /// XM_005246459 /// XM_005246460 /// XM_006712409 /// XM_006712410 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -78.55 393.02 -2.80 0.03 0.05 -4.51
200701_at 200701_at NM_006432 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006432.1 /DEF=Homo sapiens epididymal secretory protein (19.5kD) (HE1), mRNA. /FEA=mRNA /GEN=HE1 /PROD=epididymal secretory protein (19.5kD) /DB_XREF=gi:5453677 /UG=Hs.119529 epididymal secretory protein (19.5kD) /FL=gb:BC002532.1 gb:NM_006432.1 NM_006432 Niemann-Pick disease, type C2 NPC2 10577 NM_006432 /// XM_006720004 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009615 // response to virus // inferred from expression pattern /// 0015914 // phospholipid transport // traceable author statement /// 0019747 // regulation of isoprenoid metabolic process // traceable author statement /// 0030301 // cholesterol transport // inferred from direct assay /// 0032366 // intracellular sterol transport // inferred from direct assay /// 0032367 // intracellular cholesterol transport // inferred from direct assay /// 0032367 // intracellular cholesterol transport // inferred from genetic interaction /// 0033344 // cholesterol efflux // inferred from direct assay /// 0042632 // cholesterol homeostasis // inferred from direct assay /// 0046836 // glycolipid transport // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015485 // cholesterol binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction -73.08 715.84 -2.79 0.03 0.05 -4.51
205812_s_at 205812_s_at NM_006588 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006588.1 /DEF=Homo sapiens sulfotransferase family, cytosolic, 1C, member 2 (SULT1C2), mRNA. /FEA=mRNA /GEN=SULT1C2 /PROD=SULT1C sulfotransferase /DB_XREF=gi:5730070 /UG=Hs.312644 sulfotransferase family, cytosolic, 1C, member 2 /FL=gb:AF055584.1 gb:NM_006588.1 NM_006588 transmembrane emp24 protein transport domain containing 9 TMED9 54732 NM_017510 0006805 // xenobiotic metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0010638 // positive regulation of organelle organization // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032527 // protein exit from endoplasmic reticulum // inferred from mutant phenotype /// 0034498 // early endosome to Golgi transport // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0048205 // COPI coating of Golgi vesicle // inferred from mutant phenotype /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0051923 // sulfation // inferred from direct assay 0000139 // Golgi membrane // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // traceable author statement /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008146 // sulfotransferase activity // inferred from direct assay /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // non-traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction 172.68 1018.46 2.79 0.03 0.05 -4.51
213271_s_at 213271_s_at AB029040 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB029040.1 /DEF=Homo sapiens mRNA for KIAA1117 protein, partial cds. /FEA=mRNA /GEN=KIAA1117 /PROD=KIAA1117 protein /DB_XREF=gi:5689570 /UG=Hs.278398 KIAA1117 protein AB029040 dopey family member 1 DOPEY1 23033 NM_001199942 /// NM_015018 /// XM_006715393 /// XM_006715394 /// XM_006715395 /// XM_006715396 /// XM_006715397 /// XM_006715398 /// XM_006715399 /// XM_006715400 /// XM_006715401 0006810 // transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation 25.90 56.50 2.79 0.03 0.05 -4.51
200725_x_at 200725_x_at NM_006013 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006013.1 /DEF=Homo sapiens ribosomal protein L10 (RPL10), mRNA. /FEA=mRNA /GEN=RPL10 /PROD=ribosomal protein L10 /DB_XREF=gi:5174430 /UG=Hs.29797 ribosomal protein L10 /FL=gb:BC003358.1 gb:M73791.1 gb:M64241.1 gb:NM_006013.1 NM_006013 ribosomal protein L10 /// small nucleolar RNA, H/ACA box 70 RPL10 /// SNORA70 6134 /// 26778 NM_001256577 /// NM_001256580 /// NM_006013 /// NR_000011 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -1028.30 3339.35 -2.79 0.03 0.05 -4.51
212320_at 212320_at BC001002 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC001002.1 /DEF=Homo sapiens, clone IMAGE:3447696, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3447696) /DB_XREF=gi:12654358 /UG=Hs.179661 tubulin, beta polypeptide BC001002 tubulin, beta class I TUBB 203068 NM_001293212 /// NM_001293213 /// NM_001293214 /// NM_001293215 /// NM_001293216 /// NM_178014 /// NR_120608 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0009987 // cellular process // inferred from direct assay /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0042267 // natural killer cell mediated cytotoxicity // non-traceable author statement /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051297 // centrosome organization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement 0000242 // pericentriolar material // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0044297 // cell body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032794 // GTPase activating protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from direct assay 142.13 1036.31 2.79 0.03 0.05 -4.51
200727_s_at 200727_s_at AA699583 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA699583 /FEA=EST /DB_XREF=gi:2703730 /DB_XREF=est:zi42g07.s1 /CLONE=IMAGE:433500 /UG=Hs.42915 ARP2 (actin-related protein 2, yeast) homolog /FL=gb:AF006082.1 gb:NM_005722.1 AA699583 ARP2 actin-related protein 2 homolog (yeast) ACTR2 10097 NM_001005386 /// NM_005722 0006928 // cellular component movement // traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0008356 // asymmetric cell division // inferred from electronic annotation /// 0016482 // cytoplasmic transport // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0033206 // meiotic cytokinesis // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051321 // meiotic cell cycle // inferred from electronic annotation /// 0051653 // spindle localization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // inferred from reviewed computational analysis /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030478 // actin cap // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation -246.82 436.26 -2.79 0.03 0.05 -4.51
208884_s_at 208884_s_at AF006010 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF006010.1 /DEF=Homo sapiens progestin induced protein (EDD) mRNA, complete cds. /FEA=mRNA /GEN=EDD /PROD=progestin induced protein /DB_XREF=gi:4101694 /UG=Hs.278428 progestin induced protein /FL=gb:NM_015902.2 gb:AF006010.1 gb:U95000.1 AF006010 ubiquitin protein ligase E3 component n-recognin 5 UBR5 51366 NM_001282873 /// NM_015902 /// XM_005250956 /// XM_005250957 /// XM_005250959 /// XM_005250960 /// XM_005250962 /// XR_242392 0000209 // protein polyubiquitination // inferred from direct assay /// 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from mutant phenotype /// 0035413 // positive regulation of catenin import into nucleus // inferred from mutant phenotype /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0050847 // progesterone receptor signaling pathway // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 1901315 // negative regulation of histone H2A K63-linked ubiquitination // inferred from mutant phenotype /// 2000780 // negative regulation of double-strand break repair // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -73.03 261.29 -2.79 0.03 0.05 -4.51
207564_x_at 207564_x_at NM_003605 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003605.2 /DEF=Homo sapiens O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (OGT), mRNA. /FEA=mRNA /GEN=OGT /PROD=O-linked GlcNAc transferase /DB_XREF=gi:6006036 /UG=Hs.100293 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) /FL=gb:U77413.1 gb:NM_003605.2 NM_003605 O-linked N-acetylglucosamine (GlcNAc) transferase OGT 8473 NM_003605 /// NM_181672 /// NM_181673 /// XM_005262308 /// XM_006724714 0006110 // regulation of glycolytic process // inferred from direct assay /// 0006325 // chromatin organization // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0006493 // protein O-linked glycosylation // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007584 // response to nutrient // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030854 // positive regulation of granulocyte differentiation // inferred from mutant phenotype /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032868 // response to insulin // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0035020 // regulation of Rac protein signal transduction // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043981 // histone H4-K5 acetylation // inferred from direct assay /// 0043982 // histone H4-K8 acetylation // inferred from direct assay /// 0043984 // histone H4-K16 acetylation // inferred from direct assay /// 0045862 // positive regulation of proteolysis // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046626 // regulation of insulin receptor signaling pathway // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from direct assay /// 0061087 // positive regulation of histone H3-K27 methylation // inferred from mutant phenotype /// 0071300 // cellular response to retinoic acid // inferred from mutant phenotype /// 0080182 // histone H3-K4 trimethylation // inferred from mutant phenotype /// 0090526 // regulation of gluconeogenesis involved in cellular glucose homeostasis // inferred from sequence or structural similarity 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070688 // MLL5-L complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // traceable author statement /// 0016262 // protein N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043995 // histone acetyltransferase activity (H4-K5 specific) // inferred from direct assay /// 0043996 // histone acetyltransferase activity (H4-K8 specific) // inferred from direct assay /// 0046972 // histone acetyltransferase activity (H4-K16 specific) // inferred from direct assay /// 0097363 // protein O-GlcNAc transferase activity // inferred from sequence or structural similarity 37.58 80.14 2.79 0.03 0.05 -4.51
212354_at 212354_at BE500977 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE500977 /FEA=EST /DB_XREF=gi:9703385 /DB_XREF=est:7a33h02.x1 /CLONE=IMAGE:3220563 /UG=Hs.70823 KIAA1077 protein BE500977 sulfatase 1 SULF1 23213 NM_001128204 /// NM_001128205 /// NM_001128206 /// NM_015170 /// XM_006716438 /// XM_006716439 /// XM_006716440 /// XM_006716441 /// XM_006716442 0001822 // kidney development // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0002063 // chondrocyte development // inferred from sequence or structural similarity /// 0003094 // glomerular filtration // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from sequence or structural similarity /// 0014846 // esophagus smooth muscle contraction // inferred from sequence or structural similarity /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0030177 // positive regulation of Wnt signaling pathway // inferred from direct assay /// 0030201 // heparan sulfate proteoglycan metabolic process // inferred from direct assay /// 0030201 // heparan sulfate proteoglycan metabolic process // non-traceable author statement /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030513 // positive regulation of BMP signaling pathway // inferred from mutant phenotype /// 0032836 // glomerular basement membrane development // inferred from sequence or structural similarity /// 0035860 // glial cell-derived neurotrophic factor receptor signaling pathway // inferred from sequence or structural similarity /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0048706 // embryonic skeletal system development // inferred from sequence or structural similarity /// 0051216 // cartilage development // inferred from sequence or structural similarity /// 0060348 // bone development // inferred from sequence or structural similarity /// 0060384 // innervation // inferred from sequence or structural similarity /// 0060686 // negative regulation of prostatic bud formation // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005795 // Golgi stack // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // inferred from direct assay /// 0004065 // arylsulfatase activity // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from direct assay /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from mutant phenotype /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -47.70 90.72 -2.79 0.03 0.05 -4.51
212676_at 212676_at AW293356 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW293356 /FEA=EST /DB_XREF=gi:6699992 /DB_XREF=est:UI-H-BI2-ahl-c-11-0-UI.s1 /CLONE=IMAGE:2727165 /UG=Hs.58220 Homo sapiens cDNA: FLJ23005 fis, clone LNG00396, highly similar to AF055023 Homo sapiens clone 24723 mRNA sequence AW293356 neurofibromin-like /// neurofibromin 1 LOC101930150 /// NF1 4763 /// 101930150 NM_000267 /// NM_001042492 /// NM_001128147 /// XM_005257983 /// XM_005257984 /// XM_006721922 /// XM_006721923 /// XM_006721924 /// XM_006721925 /// XM_006721926 /// XM_006721927 /// XM_006721928 0000165 // MAPK cascade // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001656 // metanephros development // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001952 // regulation of cell-matrix adhesion // inferred from sequence or structural similarity /// 0001953 // negative regulation of cell-matrix adhesion // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0007154 // cell communication // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from sequence or structural similarity /// 0007406 // negative regulation of neuroblast proliferation // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007422 // peripheral nervous system development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0014044 // Schwann cell development // inferred from sequence or structural similarity /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred from sequence or structural similarity /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0021510 // spinal cord development // inferred from sequence or structural similarity /// 0021897 // forebrain astrocyte development // inferred from sequence or structural similarity /// 0021915 // neural tube development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from sequence or structural similarity /// 0022011 // myelination in peripheral nervous system // inferred from sequence or structural similarity /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030199 // collagen fibril organization // inferred from sequence or structural similarity /// 0030325 // adrenal gland development // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0032318 // regulation of Ras GTPase activity // inferred from mutant phenotype /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from mutant phenotype /// 0032320 // positive regulation of Ras GTPase activity // inferred from sequence or structural similarity /// 0035021 // negative regulation of Rac protein signal transduction // inferred from electronic annotation /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042992 // negative regulation of transcription factor import into nucleus // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from sequence or structural similarity /// 0043407 // negative regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043409 // negative regulation of MAPK cascade // inferred from mutant phenotype /// 0043409 // negative regulation of MAPK cascade // inferred from sequence or structural similarity /// 0043473 // pigmentation // inferred from sequence or structural similarity /// 0043525 // positive regulation of neuron apoptotic process // inferred from sequence or structural similarity /// 0043535 // regulation of blood vessel endothelial cell migration // inferred from mutant phenotype /// 0045124 // regulation of bone resorption // inferred from sequence or structural similarity /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045685 // regulation of glial cell differentiation // inferred from sequence or structural similarity /// 0045762 // positive regulation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0045765 // regulation of angiogenesis // inferred from mutant phenotype /// 0046580 // negative regulation of Ras protein signal transduction // not recorded /// 0046929 // negative regulation of neurotransmitter secretion // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // inferred from sequence or structural similarity /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // inferred from sequence or structural similarity /// 0048593 // camera-type eye morphogenesis // inferred from sequence or structural similarity /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0048745 // smooth muscle tissue development // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0048853 // forebrain morphogenesis // inferred from sequence or structural similarity /// 0050890 // cognition // inferred from mutant phenotype /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031235 // intrinsic component of the cytoplasmic side of the plasma membrane // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0008429 // phosphatidylethanolamine binding // inferred from direct assay /// 0031210 // phosphatidylcholine binding // inferred from direct assay -50.60 82.38 -2.78 0.03 0.05 -4.51
201034_at 201034_at BE545756 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE545756 /FEA=EST /DB_XREF=gi:9774401 /DB_XREF=est:601076920F1 /CLONE=IMAGE:3462940 /UG=Hs.8110 L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chain /FL=gb:BC000306.1 gb:NM_005327.1 BE545756 adducin 3 (gamma) ADD3 120 NM_001121 /// NM_016824 /// NM_019903 /// XM_005269529 /// XM_005269530 /// XM_005269531 /// XM_005269533 /// XM_005269534 /// XM_005269535 /// XM_006717626 /// XM_006717627 /// XM_006717628 /// XM_006717629 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // traceable author statement 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005516 // calmodulin binding // inferred from electronic annotation -60.05 367.65 -2.78 0.03 0.05 -4.51
222000_at 222000_at AI915947 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI915947 /FEA=EST /DB_XREF=gi:5635802 /DB_XREF=est:wg96e01.x1 /CLONE=IMAGE:2379096 /UG=Hs.28212 ESTs AI915947 chromosome 1 open reading frame 174 C1orf174 339448 NM_207356 /// XM_005244743 0005634 // nucleus // inferred from direct assay 39.13 113.99 2.78 0.03 0.05 -4.51
211177_s_at 211177_s_at AB019695 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB019695.1 /DEF=Homo sapiens mRNA for thioredoxin reductase II beta, complete cds. /FEA=mRNA /PROD=thioredoxin reductase II beta /DB_XREF=gi:4827178 /UG=Hs.12971 thioredoxin reductase beta /FL=gb:AB019695.1 AB019695 thioredoxin reductase 2 TXNRD2 10587 NM_001282512 /// NM_006440 /// NM_145747 /// NM_145748 0000305 // response to oxygen radical // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0004791 // thioredoxin-disulfide reductase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016668 // oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation 116.10 351.10 2.78 0.03 0.05 -4.51
215207_x_at 215207_x_at BF695847 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF695847 /FEA=EST /DB_XREF=gi:11981255 /DB_XREF=est:601852205F1 /CLONE=IMAGE:4076232 /UG=Hs.301917 YDD19 protein BF695847 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) /// nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 3 NUS1 /// NUS1P3 11049 /// 116150 NM_138459 0001525 // angiogenesis // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // inferred from genetic interaction /// 0055092 // sterol homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from electronic annotation 33.22 74.99 2.78 0.03 0.05 -4.51
214383_x_at 214383_x_at BF063121 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF063121 /FEA=EST /DB_XREF=gi:10822031 /DB_XREF=est:7h83f11.x1 /CLONE=IMAGE:3322605 /UG=Hs.281706 sortilin 1 BF063121 kelch domain containing 3 KLHDC3 116138 NM_001242872 /// NM_057161 /// NR_040101 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // non-traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 46.63 167.01 2.78 0.03 0.05 -4.51
200821_at 200821_at NM_013995 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013995.1 /DEF=Homo sapiens lysosomal-associated membrane protein 2 (LAMP2), transcript variant LAMP2B, mRNA. /FEA=mRNA /GEN=LAMP2 /PROD=lysosomal-associated membrane protein 2precursor /DB_XREF=gi:7669502 /UG=Hs.8262 lysosomal-associated membrane protein 2 /FL=gb:U36336.1 gb:BC002965.1 gb:NM_013995.1 NM_013995 lysosomal-associated membrane protein 2 LAMP2 3920 NM_001122606 /// NM_002294 /// NM_013995 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0050821 // protein stabilization // inferred from sequence or structural similarity 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031088 // platelet dense granule membrane // inferred from direct assay /// 0031088 // platelet dense granule membrane // traceable author statement /// 0031902 // late endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0019899 // enzyme binding // inferred from physical interaction 95.20 218.88 2.78 0.03 0.05 -4.51
210802_s_at 210802_s_at BC002841 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002841.1 /DEF=Homo sapiens, Similar to putative dimethyladenosine transferase, clone MGC:3382, mRNA, complete cds. /FEA=mRNA /PROD=Similar to putative dimethyladenosinetransferase /DB_XREF=gi:12803982 /UG=Hs.125819 putative dimethyladenosine transferase /FL=gb:BC002841.1 BC002841 DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae) DIMT1 27292 NM_014473 0000154 // rRNA modification // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016433 // rRNA (adenine) methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0052909 // 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity // inferred from electronic annotation 31.05 66.72 2.77 0.03 0.05 -4.51
203065_s_at 203065_s_at NM_001753 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001753.2 /DEF=Homo sapiens caveolin 1, caveolae protein, 22kD (CAV1), mRNA. /FEA=mRNA /GEN=CAV1 /PROD=caveolin 1 /DB_XREF=gi:4580417 /UG=Hs.323469 caveolin 1, caveolae protein, 22kD /FL=gb:NM_001753.2 NM_001753 caveolin 1, caveolae protein, 22kDa CAV1 857 NM_001172895 /// NM_001172896 /// NM_001172897 /// NM_001753 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000165 // MAPK cascade // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002931 // response to ischemia // inferred from electronic annotation /// 0003057 // regulation of the force of heart contraction by chemical signal // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from sequence or structural similarity /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from sequence or structural similarity /// 0006940 // regulation of smooth muscle contraction // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0007595 // lactation // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008104 // protein localization // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from expression pattern /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from sequence or structural similarity /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016050 // vesicle organization // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // inferred from sequence or structural similarity /// 0019915 // lipid storage // inferred from sequence or structural similarity /// 0030193 // regulation of blood coagulation // inferred from mutant phenotype /// 0030301 // cholesterol transport // traceable author statement /// 0030514 // negative regulation of BMP signaling pathway // inferred from direct assay /// 0030857 // negative regulation of epithelial cell differentiation // inferred from sequence or structural similarity /// 0030879 // mammary gland development // inferred from sequence or structural similarity /// 0031295 // T cell costimulation // inferred from direct assay /// 0031397 // negative regulation of protein ubiquitination // inferred from mutant phenotype /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032507 // maintenance of protein location in cell // inferred from sequence or structural similarity /// 0032570 // response to progesterone // inferred from direct assay /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0033484 // nitric oxide homeostasis // inferred from sequence or structural similarity /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // traceable author statement /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043409 // negative regulation of MAPK cascade // inferred from sequence or structural similarity /// 0043627 // response to estrogen // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045907 // positive regulation of vasoconstriction // inferred from sequence or structural similarity /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0046426 // negative regulation of JAK-STAT cascade // inferred from sequence or structural similarity /// 0048550 // negative regulation of pinocytosis // inferred from mutant phenotype /// 0048554 // positive regulation of metalloenzyme activity // inferred from sequence or structural similarity /// 0050900 // leukocyte migration // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051480 // cytosolic calcium ion homeostasis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from sequence or structural similarity /// 0051899 // membrane depolarization // inferred from sequence or structural similarity /// 0052547 // regulation of peptidase activity // inferred from sequence or structural similarity /// 0055074 // calcium ion homeostasis // inferred from sequence or structural similarity /// 0060056 // mammary gland involution // inferred from sequence or structural similarity /// 0070836 // caveola assembly // inferred from mutant phenotype /// 0071455 // cellular response to hyperoxia // inferred from mutant phenotype /// 0072584 // caveolin-mediated endocytosis // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 0097190 // apoptotic signaling pathway // inferred from mutant phenotype /// 2000286 // receptor internalization involved in canonical Wnt signaling pathway // inferred from mutant phenotype /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // traceable author statement /// 0002080 // acrosomal membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // non-traceable author statement /// 0005929 // cilium // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005102 // receptor binding // inferred from physical interaction /// 0005113 // patched binding // non-traceable author statement /// 0005198 // structural molecule activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0015485 // cholesterol binding // traceable author statement /// 0016504 // peptidase activator activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from physical interaction /// 0032947 // protein complex scaffold // traceable author statement /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -390.77 1997.26 -2.77 0.03 0.05 -4.51
201591_s_at 201591_s_at NM_007184 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007184.1 /DEF=Homo sapiens imidazoline receptor candidate (I-1), mRNA. /FEA=mRNA /GEN=I-1 /PROD=imidazoline receptor candidate /DB_XREF=gi:6005787 /UG=Hs.26285 imidazoline receptor candidate /FL=gb:AF082516.1 gb:NM_007184.1 NM_007184 nischarin NISCH 11188 NM_001276293 /// NM_001276294 /// NM_007184 /// XM_005264839 /// XM_006712955 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0048243 // norepinephrine secretion // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008227 // G-protein coupled amine receptor activity // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 109.33 353.61 2.77 0.03 0.05 -4.51
217843_s_at 217843_s_at NM_014166 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014166.1 /DEF=Homo sapiens HSPC126 protein (HSPC126), mRNA. /FEA=mRNA /GEN=HSPC126 /PROD=HSPC126 protein /DB_XREF=gi:7661787 /UG=Hs.181112 HSPC126 protein /FL=gb:AF300618.1 gb:BC005189.1 gb:AF161475.1 gb:AF230381.1 gb:NM_014166.1 NM_014166 mediator complex subunit 4 MED4 29079 NM_001270629 /// NM_014166 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030518 // intracellular steroid hormone receptor signaling pathway // inferred from direct assay /// 0030521 // androgen receptor signaling pathway // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016592 // mediator complex // inferred from direct assay 0001104 // RNA polymerase II transcription cofactor activity // inferred from direct assay /// 0003712 // transcription cofactor activity // inferred from direct assay /// 0004872 // receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // non-traceable author statement /// 0042809 // vitamin D receptor binding // non-traceable author statement /// 0046966 // thyroid hormone receptor binding // inferred from direct assay 27.62 37.69 2.77 0.03 0.05 -4.51
210460_s_at 210460_s_at AB033605 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB033605.1 /DEF=Homo sapiens mRNA for pUb-R5, complete cds. /FEA=mRNA /GEN=hpUb-R5 /PROD=pUb-R5 /DB_XREF=gi:8918352 /UG=Hs.148495 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 /FL=gb:AB033605.1 AB033605 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 PSMD4 5710 NM_002810 /// NM_153822 /// XM_005245354 /// XM_006711464 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008540 // proteasome regulatory particle, base subcomplex // inferred from electronic annotation /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -71.90 267.23 -2.77 0.03 0.05 -4.51
200851_s_at 200851_s_at NM_014761 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014761.1 /DEF=Homo sapiens KIAA0174 gene product (KIAA0174), mRNA. /FEA=mRNA /GEN=KIAA0174 /PROD=KIAA0174 gene product /DB_XREF=gi:7661971 /UG=Hs.75824 KIAA0174 gene product /FL=gb:D79996.1 gb:BC000430.1 gb:BC004359.1 gb:NM_014761.1 NM_014761 increased sodium tolerance 1 homolog (yeast) IST1 9798 NM_001270975 /// NM_001270976 /// NM_001270977 /// NM_001270978 /// NM_001270979 /// NM_014761 0000910 // cytokinesis // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008104 // protein localization // inferred from mutant phenotype /// 0009838 // abscission // inferred from direct assay /// 0009838 // abscission // inferred from mutant phenotype /// 0019076 // viral release from host cell // inferred from direct assay /// 0045184 // establishment of protein localization // inferred from mutant phenotype /// 0045862 // positive regulation of proteolysis // inferred from direct assay /// 0046745 // viral capsid secondary envelopment // inferred from direct assay /// 0048672 // positive regulation of collateral sprouting // inferred from electronic annotation /// 0051301 // cell division // inferred from mutant phenotype 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0090543 // Flemming body // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0090541 // MIT domain binding // inferred from physical interaction -54.28 452.06 -2.77 0.03 0.05 -4.51
208636_at 208636_at AI082078 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI082078 /FEA=EST /DB_XREF=gi:3418870 /DB_XREF=est:oz52g10.x1 /CLONE=IMAGE:1679010 /UG=Hs.119000 actinin, alpha 1 /FL=gb:NM_001102.2 gb:BC003576.1 AI082078 actinin, alpha 1 ACTN1 87 NM_001102 /// NM_001130004 /// NM_001130005 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034329 // cell junction assembly // traceable author statement /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0048041 // focal adhesion assembly // inferred from mutant phenotype /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051271 // negative regulation of cellular component movement // inferred from mutant phenotype /// 0051764 // actin crosslink formation // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031143 // pseudopodium // traceable author statement /// 0042995 // cell projection // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017166 // vinculin binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation 236.35 969.12 2.77 0.03 0.05 -4.51
220925_at 220925_at NM_021929 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021929.1 /DEF=Homo sapiens hypothetical protein FLJ21613 similar to rat corneal wound healing related protein (FLJ21613), mRNA. /FEA=mRNA /GEN=FLJ21613 /PROD=hypothetical protein FLJ21613 similar to ratcorneal wound healing related protein /DB_XREF=gi:11345463 /UG=Hs.300952 hypothetical protein FLJ21613 similar to rat corneal wound healing related protein /FL=gb:NM_021929.1 NM_021929 N(alpha)-acetyltransferase 35, NatC auxiliary subunit NAA35 60560 NM_024635 /// XM_005252126 /// XM_005252127 /// XM_005252128 /// XM_006717231 0008152 // metabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0048659 // smooth muscle cell proliferation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005844 // polysome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0031417 // NatC complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation 31.15 90.10 2.77 0.03 0.05 -4.51
201530_x_at 201530_x_at NM_001416 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001416.1 /DEF=Homo sapiens eukaryotic translation initiation factor 4A, isoform 1 (EIF4A1), mRNA. /FEA=mRNA /GEN=EIF4A1 /PROD=eukaryotic translation initiation factor 4A,isoform 1 /DB_XREF=gi:4503528 /UG=Hs.129673 eukaryotic translation initiation factor 4A, isoform 1 /FL=gb:NM_001416.1 NM_001416 eukaryotic translation initiation factor 4A1 /// uncharacterized LOC101928634 /// SENP3-EIF4A1 readthrough (NMD candidate) /// small nucleolar RNA, H/ACA box 48 /// small nucleolar RNA, H/ACA box 67 /// small nucleolar RNA, C/D box 10 EIF4A1 /// LOC101928634 /// SENP3-EIF4A1 /// SNORA48 /// SNORA67 /// SNORD10 1973 /// 26781 /// 652965 /// 652966 /// 100533955 /// 101928634 NM_001204510 /// NM_001416 /// NR_002604 /// NR_002912 /// NR_002918 /// NR_037926 /// XR_244579 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031100 // organ regeneration // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000339 // RNA cap binding // traceable author statement /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003729 // mRNA binding // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004386 // helicase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -728.63 2897.84 -2.77 0.03 0.05 -4.51
203959_s_at 203959_s_at NM_014870 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014870.1 /DEF=Homo sapiens KIAA0478 gene product (KIAA0478), mRNA. /FEA=mRNA /GEN=KIAA0478 /PROD=KIAA0478 gene product /DB_XREF=gi:7662153 /UG=Hs.4236 KIAA0478 gene product /FL=gb:AB007947.1 gb:NM_014870.1 NM_014870 zinc finger and BTB domain containing 40 ZBTB40 9923 NM_001083621 /// NM_014870 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0030282 // bone mineralization // non-traceable author statement 0005634 // nucleus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 34.18 66.86 2.77 0.03 0.05 -4.51
201603_at 201603_at AI817061 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI817061 /FEA=EST /DB_XREF=gi:5436140 /DB_XREF=est:wj76e05.x1 /CLONE=IMAGE:2408768 /UG=Hs.16533 myosin phosphatase, target subunit 1 /FL=gb:NM_002480.1 AI817061 protein phosphatase 1, regulatory subunit 12A PPP1R12A 4659 NM_001143885 /// NM_001143886 /// NM_001244990 /// NM_001244992 /// NM_002480 /// XM_005268885 /// XM_005268886 /// XM_005268887 /// XM_005268888 /// XM_005268889 /// XM_005268891 /// XM_005268892 /// XM_005268893 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006470 // protein dephosphorylation // inferred from mutant phenotype /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0007165 // signal transduction // non-traceable author statement /// 0030155 // regulation of cell adhesion // inferred from direct assay /// 0035507 // regulation of myosin-light-chain-phosphatase activity // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046822 // regulation of nucleocytoplasmic transport // inferred from electronic annotation /// 0051297 // centrosome organization // inferred from mutant phenotype 0000776 // kinetochore // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0043292 // contractile fiber // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from direct assay /// 0004871 // signal transducer activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019208 // phosphatase regulator activity // inferred from direct assay /// 0019208 // phosphatase regulator activity // inferred from mutant phenotype /// 0019901 // protein kinase binding // inferred from physical interaction /// 0071889 // 14-3-3 protein binding // inferred from direct assay 47.05 142.60 2.76 0.03 0.05 -4.51
202587_s_at 202587_s_at BC001116 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001116.1 /DEF=Homo sapiens, adenylate kinase 1, clone MGC:1808, mRNA, complete cds. /FEA=mRNA /PROD=adenylate kinase 1 /DB_XREF=gi:12654562 /UG=Hs.76240 adenylate kinase 1 /FL=gb:BC001116.1 gb:NM_000476.1 gb:AB021871.1 BC001116 adenylate kinase 1 AK1 203 NM_000476 /// XM_005251786 /// XM_005251788 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006165 // nucleoside diphosphate phosphorylation // inferred from direct assay /// 0006172 // ADP biosynthetic process // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0009142 // nucleoside triphosphate biosynthetic process // inferred from direct assay /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046033 // AMP metabolic process // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0001520 // outer dense fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0036126 // sperm flagellum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019205 // nucleobase-containing compound kinase activity // inferred from electronic annotation -43.42 236.64 -2.76 0.03 0.05 -4.51
212411_at 212411_at BE747342 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE747342 /FEA=EST /DB_XREF=gi:10161334 /DB_XREF=est:601580340F1 /CLONE=IMAGE:3929313 /UG=Hs.91579 Homo sapiens clone 23783 mRNA sequence BE747342 IMP4, U3 small nucleolar ribonucleoprotein IMP4 92856 NM_033416 /// XM_005263844 0006364 // rRNA processing // non-traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 49.15 183.70 2.76 0.03 0.05 -4.51
203033_x_at 203033_x_at NM_000143 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000143.1 /DEF=Homo sapiens fumarate hydratase (FH), mRNA. /FEA=mRNA /GEN=FH /PROD=fumarate hydratase /DB_XREF=gi:4503716 /UG=Hs.75653 fumarate hydratase /FL=gb:BC003108.1 gb:M15502.1 gb:U59309.1 gb:U48857.1 gb:NM_000143.1 NM_000143 fumarate hydratase FH 2271 NM_000143 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006106 // fumarate metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0045239 // tricarboxylic acid cycle enzyme complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004333 // fumarate hydratase activity // not recorded /// 0016829 // lyase activity // inferred from electronic annotation 58.88 295.24 2.76 0.03 0.05 -4.51
200878_at 200878_at AF052094 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF052094.1 /DEF=Homo sapiens clone 23698 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3360400 /UG=Hs.8136 endothelial PAS domain protein 1 /FL=gb:U51626.1 gb:U81984.1 gb:NM_001430.1 AF052094 endothelial PAS domain protein 1 EPAS1 2034 NM_001430 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from direct assay /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0042415 // norepinephrine metabolic process // inferred from electronic annotation /// 0043129 // surfactant homeostasis // inferred from electronic annotation /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048469 // cell maturation // inferred from electronic annotation /// 0048625 // myoblast fate commitment // inferred from sequence or structural similarity /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // inferred from physical interaction /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from genetic interaction /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation -139.50 916.60 -2.76 0.03 0.05 -4.51
200607_s_at 200607_s_at BG289967 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG289967 /FEA=EST /DB_XREF=gi:13046289 /DB_XREF=est:602381386F1 /CLONE=IMAGE:4499085 /UG=Hs.81848 RAD21 (S. pombe) homolog /FL=gb:D38551.1 gb:NM_006265.1 BG289967 RAD21 homolog (S. pombe) RAD21 5885 NM_006265 0000278 // mitotic cell cycle // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // traceable author statement /// 0006310 // DNA recombination // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0071168 // protein localization to chromatin // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008278 // cohesin complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0034991 // nuclear meiotic cohesin complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -115.22 236.79 -2.76 0.03 0.05 -4.51
205078_at 205078_at NM_002643 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002643.1 /DEF=Homo sapiens phosphatidylinositol glycan, class F (PIGF), mRNA. /FEA=mRNA /GEN=PIGF /PROD=phosphatidylinositol glycan, class F /DB_XREF=gi:4505796 /UG=Hs.166982 phosphatidylinositol glycan, class F /FL=gb:D13435.1 gb:NM_002643.1 NM_002643 phosphatidylinositol glycan anchor biosynthesis, class F PIGF 5281 NM_002643 /// NM_173074 /// XM_005264369 0006501 // C-terminal protein lipidation // traceable author statement /// 0006506 // GPI anchor biosynthetic process // inferred from sequence or structural similarity /// 0016254 // preassembly of GPI anchor in ER membrane // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004307 // ethanolaminephosphotransferase activity // traceable author statement 45.10 123.67 2.76 0.03 0.05 -4.51
202236_s_at 202236_s_at NM_003051 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003051.1 /DEF=Homo sapiens solute carrier family 16 (monocarboxylic acid transporters), member 1 (SLC16A1), mRNA. /FEA=mRNA /GEN=SLC16A1 /PROD=solute carrier family 16 (monocarboxylic acidtransporters), member 1 /DB_XREF=gi:4506982 /UG=Hs.75231 solute carrier family 16 (monocarboxylic acid transporters), member 1 /FL=gb:NM_003051.1 gb:L31801.1 NM_003051 solute carrier family 16 (monocarboxylate transporter), member 1 SLC16A1 6566 NM_001166496 /// NM_003051 0006090 // pyruvate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015718 // monocarboxylic acid transport // traceable author statement /// 0015728 // mevalonate transport // traceable author statement /// 0035873 // lactate transmembrane transport // inferred from electronic annotation /// 0035879 // plasma membrane lactate transport // inferred from sequence or structural similarity /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008028 // monocarboxylic acid transmembrane transporter activity // traceable author statement /// 0015130 // mevalonate transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0097159 // organic cyclic compound binding // inferred from electronic annotation 130.40 539.58 2.76 0.03 0.05 -4.51
210346_s_at 210346_s_at AF212224 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF212224.1 /DEF=Homo sapiens CLK4 mRNA, complete cds. /FEA=mRNA /PROD=CLK4 /DB_XREF=gi:9437514 /UG=Hs.295231 Homo sapiens CLK4 mRNA, complete cds /FL=gb:AF212224.1 AF212224 CDC-like kinase 4 CLK4 57396 NM_020666 /// XM_005265947 /// XM_005265948 /// XM_005265949 /// XM_006714895 /// XM_006714896 /// XR_427807 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -26.53 79.61 -2.75 0.03 0.05 -4.51
200632_s_at 200632_s_at NM_006096 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006096.1 /DEF=Homo sapiens N-myc downstream regulated (NDRG1), mRNA. /FEA=mRNA /GEN=NDRG1 /PROD=N-myc downstream regulated /DB_XREF=gi:5174656 /UG=Hs.75789 N-myc downstream regulated /FL=gb:BC003175.1 gb:D87953.1 gb:AF004162.1 gb:NM_006096.1 NM_006096 N-myc downstream regulated 1 NDRG1 10397 NM_001135242 /// NM_001258432 /// NM_001258433 /// NM_006096 0008219 // cell death // inferred from electronic annotation /// 0010038 // response to metal ion // traceable author statement /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from expression pattern /// 0032287 // peripheral nervous system myelin maintenance // inferred from electronic annotation /// 0045576 // mast cell activation // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0090232 // positive regulation of spindle checkpoint // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from direct assay /// 0043015 // gamma-tubulin binding // inferred from direct assay /// 0045296 // cadherin binding // inferred from direct assay -110.80 238.72 -2.75 0.03 0.05 -4.51
212064_x_at 212064_x_at AI471665 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI471665 /FEA=EST /DB_XREF=gi:4333755 /DB_XREF=est:tl99b10.x1 /CLONE=IMAGE:2155195 /UG=Hs.7647 MYC-associated zinc finger protein (purine-binding transcription factor) AI471665 MYC-associated zinc finger protein (purine-binding transcription factor) MAZ 4150 NM_001042539 /// NM_001276275 /// NM_001276276 /// NM_002383 /// NR_074080 /// XM_006721047 /// XM_006721048 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from direct assay /// 0006369 // termination of RNA polymerase II transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 64.33 164.14 2.75 0.03 0.05 -4.51
200880_at 200880_at AL534104 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL534104 /FEA=EST /DB_XREF=gi:12797597 /DB_XREF=est:AL534104 /CLONE=CS0DF005YF01 (3 prime) /UG=Hs.94 DnaJ (Hsp40) homolog, subfamily A, member 1 /FL=gb:D13388.1 gb:L08069.1 gb:NM_001539.1 AL534104 DnaJ (Hsp40) homolog, subfamily A, member 1 DNAJA1 3301 NM_001539 0006457 // protein folding // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043508 // negative regulation of JUN kinase activity // inferred from mutant phenotype /// 0051223 // regulation of protein transport // inferred from direct assay /// 0070585 // protein localization to mitochondrion // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from physical interaction 60.00 481.10 2.75 0.03 0.05 -4.51
201024_x_at 201024_x_at BG261322 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG261322 /FEA=EST /DB_XREF=gi:12771138 /DB_XREF=est:602373079F1 /CLONE=IMAGE:4484563 /UG=Hs.158688 KIAA0741 gene product /FL=gb:AB018284.1 gb:AF078035.1 gb:NM_015904.1 BG261322 eukaryotic translation initiation factor 5B EIF5B 9669 NM_015904 /// XM_005264075 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0006446 // regulation of translational initiation // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 63.68 274.84 2.75 0.03 0.05 -4.51
200694_s_at 200694_s_at NM_020414 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020414.2 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 24 (DDX24), mRNA. /FEA=mRNA /GEN=DDX24 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 24 /DB_XREF=gi:13787212 /UG=Hs.155986 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 24 /FL=gb:AL136886.1 gb:NM_020414.2 gb:AF214731.1 NM_020414 DEAD (Asp-Glu-Ala-Asp) box helicase 24 DDX24 57062 NM_020414 0003351 // epithelial cilium movement // non-traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0007338 // single fertilization // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016070 // RNA metabolic process // non-traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031514 // motile cilium // inferred from direct assay /// 0072372 // primary cilium // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // non-traceable author statement /// 0004004 // ATP-dependent RNA helicase activity // non-traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 55.62 275.61 2.75 0.03 0.05 -4.51
201522_x_at 201522_x_at NM_003097 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003097.2 /DEF=Homo sapiens small nuclear ribonucleoprotein polypeptide N (SNRPN), transcript variant 1, mRNA. /FEA=mRNA /GEN=SNRPN /PROD=small nuclear ribonucleoprotein polypeptide N /DB_XREF=gi:13027651 /UG=Hs.48375 small nuclear ribonucleoprotein polypeptide N /FL=gb:U41303.1 gb:NM_003097.2 gb:BC003180.1 gb:J04615.1 NM_003097 small nuclear ribonucleoprotein polypeptide N /// SNRPN upstream reading frame SNRPN /// SNURF 6638 /// 8926 NM_003097 /// NM_005678 /// NM_022804 /// NM_022805 /// NM_022806 /// NM_022807 /// NM_022808 0008380 // RNA splicing // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005685 // U1 snRNP // inferred from electronic annotation /// 0005686 // U2 snRNP // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -213.20 799.88 -2.75 0.03 0.05 -4.51
200082_s_at 200082_s_at AI805587 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI805587 /FEA=EST /DB_XREF=gi:5392153 /DB_XREF=est:tx97a02.x1 /CLONE=IMAGE:2277482 /UG=Hs.301547 ribosomal protein S7 AI805587 ribosomal protein S7 RPS7 6201 NM_001011 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0002181 // cytoplasmic translation // not recorded /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030686 // 90S preribosome // not recorded /// 0032040 // small-subunit processome // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -489.72 2777.24 -2.75 0.03 0.05 -4.51
208698_s_at 208698_s_at L14599 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L14599.1 /DEF=Human mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:348238 /UG=Hs.172207 non-POU-domain-containing, octamer-binding /FL=gb:BC002364.1 gb:U89867.1 gb:L14599.1 gb:U02493.1 L14599 non-POU domain containing, octamer-binding NONO 4841 NM_001145408 /// NM_001145409 /// NM_001145410 /// NM_007363 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0042382 // paraspeckles // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -75.12 512.69 -2.74 0.03 0.05 -4.51
202431_s_at 202431_s_at NM_002467 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002467.1 /DEF=Homo sapiens v-myc avian myelocytomatosis viral oncogene homolog (MYC), mRNA. /FEA=mRNA /GEN=MYC /PROD=v-myc avian myelocytomatosis viral oncogenehomolog /DB_XREF=gi:12962934 /UG=Hs.79070 v-myc avian myelocytomatosis viral oncogene homolog /FL=gb:BC000141.1 gb:BC000917.2 gb:NM_002467.1 NM_002467 v-myc avian myelocytomatosis viral oncogene homolog MYC 4609 NM_002467 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000165 // MAPK cascade // inferred from mutant phenotype /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0006112 // energy reserve metabolic process // non-traceable author statement /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006879 // cellular iron ion homeostasis // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0010332 // response to gamma radiation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0010468 // regulation of gene expression // inferred from direct assay /// 0015671 // oxygen transport // non-traceable author statement /// 0032204 // regulation of telomere maintenance // inferred from mutant phenotype /// 0032873 // negative regulation of stress-activated MAPK cascade // inferred from sequence or structural similarity /// 0034644 // cellular response to UV // inferred from expression pattern /// 0035690 // cellular response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0044346 // fibroblast apoptotic process // traceable author statement /// 0045656 // negative regulation of monocyte differentiation // inferred from mutant phenotype /// 0045727 // positive regulation of translation // non-traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from mutant phenotype /// 0048147 // negative regulation of fibroblast proliferation // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay /// 0051276 // chromosome organization // inferred from direct assay /// 0051782 // negative regulation of cell division // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from direct assay /// 0070848 // response to growth factor // traceable author statement /// 0090096 // positive regulation of metanephric cap mesenchymal cell proliferation // inferred from sequence or structural similarity /// 2000573 // positive regulation of DNA biosynthetic process // inferred from mutant phenotype /// 2001022 // positive regulation of response to DNA damage stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0044195 // nucleoplasmic reticulum // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070491 // repressing transcription factor binding // inferred from physical interaction /// 0070888 // E-box binding // inferred from direct assay /// 0071074 // eukaryotic initiation factor eIF2 binding // inferred from physical interaction -79.93 497.81 -2.74 0.03 0.05 -4.51
201105_at 201105_at NM_002305 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002305.2 /DEF=Homo sapiens lectin, galactoside-binding, soluble, 1 (galectin 1) (LGALS1), mRNA. /FEA=mRNA /GEN=LGALS1 /PROD=beta-galactosidase binding lectin precursor /DB_XREF=gi:6006015 /UG=Hs.227751 lectin, galactoside-binding, soluble, 1 (galectin 1) /FL=gb:BC001693.1 gb:J04456.1 gb:NM_002305.2 NM_002305 lectin, galactoside-binding, soluble, 1 LGALS1 3956 NM_002305 0002317 // plasma cell differentiation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0010812 // negative regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from electronic annotation /// 0034120 // positive regulation of erythrocyte aggregation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001948 // glycoprotein binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0016936 // galactoside binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0030395 // lactose binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043236 // laminin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -979.47 3995.19 -2.74 0.03 0.05 -4.51
218185_s_at 218185_s_at NM_018120 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018120.1 /DEF=Homo sapiens hypothetical protein FLJ10511 (FLJ10511), mRNA. /FEA=mRNA /GEN=FLJ10511 /PROD=hypothetical protein FLJ10511 /DB_XREF=gi:8922478 /UG=Hs.106768 hypothetical protein FLJ10511 /FL=gb:NM_018120.1 NM_018120 armadillo repeat containing 1 ARMC1 55156 NM_001286702 /// NM_018120 /// XM_005251264 /// XM_006716458 0030001 // metal ion transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 40.02 126.04 2.74 0.03 0.05 -4.51
213598_at 213598_at W87688 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W87688 /FEA=EST /DB_XREF=gi:1401813 /DB_XREF=est:zh68c03.s1 /CLONE=IMAGE:417220 /UG=Hs.125819 putative dimethyladenosine transferase W87688 31.58 60.86 2.74 0.03 0.05 -4.51
204026_s_at 204026_s_at NM_007057 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007057.1 /DEF=Homo sapiens ZW10 interactor (ZWINT), mRNA. /FEA=mRNA /GEN=ZWINT /PROD=ZW10 interactor /DB_XREF=gi:6857828 /UG=Hs.42650 ZW10 interactor /FL=gb:AF067656.1 gb:NM_007057.1 NM_007057 ZW10 interacting kinetochore protein ZWINT 11130 NM_001005413 /// NM_001005414 /// NM_007057 /// NM_032997 /// XM_005269463 /// XR_428692 /// XR_428693 0000070 // mitotic sister chromatid segregation // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // non-traceable author statement /// 0007051 // spindle organization // non-traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007093 // mitotic cell cycle checkpoint // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051649 // establishment of localization in cell // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030425 // dendrite // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction 60.97 306.56 2.74 0.03 0.05 -4.51
203312_x_at 203312_x_at NM_001663 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001663.2 /DEF=Homo sapiens ADP-ribosylation factor 6 (ARF6), mRNA. /FEA=mRNA /GEN=ARF6 /PROD=ADP-ribosylation factor 6 /DB_XREF=gi:6996000 /UG=Hs.89474 ADP-ribosylation factor 6 /FL=gb:BC002952.1 gb:M57763.1 gb:NM_001663.2 NM_001663 ADP-ribosylation factor 6 ARF6 382 NM_001663 0001889 // liver development // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from mutant phenotype /// 0030866 // cortical actin cytoskeleton organization // inferred from mutant phenotype /// 0031529 // ruffle organization // inferred from direct assay /// 0033028 // myeloid cell apoptotic process // inferred from electronic annotation /// 0034394 // protein localization to cell surface // inferred from sequence or structural similarity /// 0035020 // regulation of Rac protein signal transduction // inferred from direct assay /// 0036010 // protein localization to endosome // inferred from mutant phenotype /// 0048261 // negative regulation of receptor-mediated endocytosis // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051489 // regulation of filopodium assembly // inferred from direct assay /// 0060998 // regulation of dendritic spine development // inferred from sequence or structural similarity /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from sequence or structural similarity /// 0090162 // establishment of epithelial cell polarity // inferred from electronic annotation /// 0097284 // hepatocyte apoptotic process // inferred from electronic annotation 0001726 // ruffle // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // traceable author statement /// 0005769 // early endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030496 // midbody // inferred from electronic annotation /// 0031527 // filopodium membrane // inferred from direct assay /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction 43.88 319.59 2.74 0.03 0.05 -4.51
212391_x_at 212391_x_at AI925635 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI925635 /FEA=EST /DB_XREF=gi:5661686 /DB_XREF=est:wo34f07.x1 /CLONE=IMAGE:2457253 /UG=Hs.77039 ribosomal protein S3A AI925635 ribosomal protein S3A /// small nucleolar RNA, C/D box 73A RPS3A /// SNORD73A 6189 /// 8944 NM_001006 /// NM_001267699 /// NR_000007 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0002181 // cytoplasmic translation // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0097194 // execution phase of apoptosis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -730.25 4723.00 -2.74 0.03 0.05 -4.51
212124_at 212124_at AF070622 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF070622.1 /DEF=Homo sapiens clone 24800 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3283888 /UG=Hs.7252 KIAA1224 protein AF070622 zinc finger, MIZ-type containing 1 ZMIZ1 57178 NM_020338 /// XM_005269987 /// XM_005269988 /// XM_006717923 /// XM_006717924 /// XM_006717925 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007296 // vitellogenesis // inferred from electronic annotation /// 0007569 // cell aging // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -72.20 276.05 -2.74 0.03 0.05 -4.51
210137_s_at 210137_s_at BC001286 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001286.1 /DEF=Homo sapiens, Similar to dCMP deaminase, clone MGC:5160, mRNA, complete cds. /FEA=mRNA /PROD=Similar to dCMP deaminase /DB_XREF=gi:12654884 /UG=Hs.76894 dCMP deaminase /FL=gb:BC001286.1 BC001286 dCMP deaminase DCTD 1635 NM_001012732 /// NM_001921 /// XM_005262778 /// XM_005262779 /// XM_005262780 /// XM_005262781 /// XM_005262782 /// XM_006714113 /// XM_006714114 /// XM_006714115 /// XM_006714116 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006220 // pyrimidine nucleotide metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046134 // pyrimidine nucleoside biosynthetic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004132 // dCMP deaminase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 76.23 223.61 2.74 0.03 0.05 -4.51
212528_at 212528_at AI348009 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI348009 /FEA=EST /DB_XREF=gi:4085215 /DB_XREF=est:qp61b09.x1 /CLONE=IMAGE:1927481 /UG=Hs.12421 hypothetical protein AI348009 desumoylating isopeptidase 1 DESI1 27351 NM_015704 /// XM_005261571 0006508 // proteolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 39.95 89.25 2.73 0.03 0.05 -4.51
207629_s_at 207629_s_at NM_004723 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004723.1 /DEF=Homo sapiens rhorac guanine nucleotide exchange factor (GEF) 2 (ARHGEF2), mRNA. /FEA=mRNA /GEN=ARHGEF2 /PROD=rhorac guanine nucleotide exchange factor (GEF)2 /DB_XREF=gi:4758671 /UG=Hs.155120 rhorac guanine nucleotide exchange factor (GEF) 2 /FL=gb:U72206.1 gb:NM_004723.1 NM_004723 Rho/Rac guanine nucleotide exchange factor (GEF) 2 ARHGEF2 9181 NM_001162383 /// NM_001162384 /// NM_004723 /// XM_005245587 /// XM_005245588 /// XM_005245589 /// XM_005245590 /// XM_005245591 /// XM_005245592 /// XM_005245593 /// XM_005245594 /// XM_005245595 /// XM_006711622 /// XM_006711623 /// XM_006711624 /// XM_006711625 /// XM_006711626 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0007015 // actin filament organization // inferred from mutant phenotype /// 0007026 // negative regulation of microtubule depolymerization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0032314 // regulation of Rac GTPase activity // inferred from direct assay /// 0032319 // regulation of Rho GTPase activity // inferred from direct assay /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0032760 // positive regulation of tumor necrosis factor production // inferred from direct assay /// 0032855 // positive regulation of Rac GTPase activity // inferred from direct assay /// 0035023 // regulation of Rho protein signal transduction // non-traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0060546 // negative regulation of necroptotic process // inferred from sequence or structural similarity /// 0060547 // negative regulation of necrotic cell death // inferred from sequence or structural similarity /// 0071225 // cellular response to muramyl dipeptide // inferred from direct assay /// 0071356 // cellular response to tumor necrosis factor // inferred from sequence or structural similarity /// 0071474 // cellular hyperosmotic response // inferred from sequence or structural similarity /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from sequence or structural similarity /// 1902219 // negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // non-traceable author statement /// 0017048 // Rho GTPase binding // inferred from direct assay /// 0030676 // Rac guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048365 // Rac GTPase binding // inferred from direct assay -59.90 104.97 -2.73 0.03 0.05 -4.51
201252_at 201252_at NM_006503 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006503.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 4 (PSMC4), mRNA. /FEA=mRNA /GEN=PSMC4 /PROD=proteasome (prosome, macropain) 26S subunit,ATPase, 4 /DB_XREF=gi:5729990 /UG=Hs.211594 proteasome (prosome, macropain) 26S subunit, ATPase, 4 /FL=gb:BC000343.1 gb:AF038965.1 gb:AF020736.1 gb:U27515.1 gb:NM_006503.1 NM_006503 proteasome (prosome, macropain) 26S subunit, ATPase, 4 PSMC4 5704 NM_006503 /// NM_153001 /// XR_430205 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001824 // blastocyst development // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006200 // ATP catabolic process // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016234 // inclusion body // inferred from electronic annotation /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0031597 // cytosolic proteasome complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 64.45 145.88 2.73 0.03 0.05 -4.51
205327_s_at 205327_s_at NM_001616 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001616.2 /DEF=Homo sapiens activin A receptor, type II (ACVR2), mRNA. /FEA=mRNA /GEN=ACVR2 /PROD=activin A type II receptor precursor /DB_XREF=gi:10862696 /UG=Hs.26014 activin A receptor, type II /FL=gb:NM_001616.2 gb:D31770.1 NM_001616 activin A receptor, type IIA ACVR2A 92 NM_001278579 /// NM_001278580 /// NM_001616 /// XM_005263843 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // traceable author statement /// 0030510 // regulation of BMP signaling pathway // inferred from electronic annotation /// 0032924 // activin receptor signaling pathway // inferred from direct assay /// 0032927 // positive regulation of activin receptor signaling pathway // inferred from direct assay /// 0042713 // sperm ejaculation // inferred from electronic annotation /// 0043084 // penile erection // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // inferred from direct assay /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0050999 // regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0060011 // Sertoli cell proliferation // inferred from electronic annotation /// 0071773 // cellular response to BMP stimulus // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0034673 // inhibin-betaglycan-ActRII complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // traceable author statement /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015026 // coreceptor activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017002 // activin-activated receptor activity // inferred from direct assay /// 0019838 // growth factor binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0034711 // inhibin binding // inferred from electronic annotation /// 0043621 // protein self-association // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from physical interaction -42.60 93.85 -2.73 0.03 0.05 -4.51
219243_at 219243_at NM_018326 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018326.1 /DEF=Homo sapiens hypothetical protein FLJ11110 (FLJ11110), mRNA. /FEA=mRNA /GEN=FLJ11110 /PROD=hypothetical protein FLJ11110 /DB_XREF=gi:8922872 /UG=Hs.30822 hypothetical protein FLJ11110 /FL=gb:NM_018326.1 NM_018326 GTPase, IMAP family member 4 GIMAP4 55303 NM_018326 /// XM_005250017 /// XM_005250018 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 104.30 191.07 2.73 0.03 0.05 -4.51
211318_s_at 211318_s_at U85943 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U85943.1 /DEF=Homo sapiens mRNA-associated protein mrnp41 mRNA, complete cds. /FEA=mRNA /PROD=mRNA-associated protein mrnp41 /DB_XREF=gi:2231591 /UG=Hs.196209 RAE1 (RNA export 1, S.pombe) homolog /FL=gb:U85943.1 U85943 ribonucleic acid export 1 RAE1 8480 NM_001015885 /// NM_003610 /// XM_005260582 /// XM_005260583 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005640 // nuclear outer membrane // traceable author statement /// 0005643 // nuclear pore // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // traceable author statement 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from sequence or structural similarity 27.77 180.76 2.73 0.03 0.05 -4.51
205680_at 205680_at NM_002425 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002425.1 /DEF=Homo sapiens matrix metalloproteinase 10 (stromelysin 2) (MMP10), mRNA. /FEA=mRNA /GEN=MMP10 /PROD=matrix metalloproteinase 10 preproprotein /DB_XREF=gi:4505204 /UG=Hs.2258 matrix metalloproteinase 10 (stromelysin 2) /FL=gb:BC002591.1 gb:NM_002425.1 NM_002425 matrix metallopeptidase 10 (stromelysin 2) MMP10 4319 NM_002425 0006508 // proteolysis // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030574 // collagen catabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -176.32 381.41 -2.73 0.03 0.05 -4.51
214390_s_at 214390_s_at AI652662 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI652662 /FEA=EST /DB_XREF=gi:4736641 /DB_XREF=est:wb30c12.x1 /CLONE=IMAGE:2307190 /UG=Hs.157205 branched chain aminotransferase 1, cytosolic AI652662 branched chain amino-acid transaminase 1, cytosolic BCAT1 586 NM_001178091 /// NM_001178092 /// NM_001178093 /// NM_001178094 /// NM_005504 /// XM_005253460 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009081 // branched-chain amino acid metabolic process // inferred from electronic annotation /// 0009082 // branched-chain amino acid biosynthetic process // inferred from electronic annotation /// 0009083 // branched-chain amino acid catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004084 // branched-chain-amino-acid transaminase activity // not recorded /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0052654 // L-leucine transaminase activity // inferred from electronic annotation /// 0052655 // L-valine transaminase activity // inferred from electronic annotation /// 0052656 // L-isoleucine transaminase activity // inferred from electronic annotation -62.85 266.00 -2.73 0.03 0.05 -4.51
213165_at 213165_at AI041204 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI041204 /FEA=EST /DB_XREF=gi:3280398 /DB_XREF=est:ov77g06.x1 /CLONE=IMAGE:1643386 /UG=Hs.323748 Homo sapiens clone CDABP0086 mRNA sequence AI041204 centrosomal protein 350kDa CEP350 9857 NM_014810 /// XM_005245638 /// XM_006711666 /// XM_006711667 /// XM_006711668 /// XM_006711669 /// XM_006711670 /// XM_006711671 0034453 // microtubule anchoring // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0008017 // microtubule binding // inferred from electronic annotation -38.10 115.28 -2.73 0.03 0.05 -4.51
201160_s_at 201160_s_at AL556190 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL556190 /FEA=EST /DB_XREF=gi:12898634 /DB_XREF=est:AL556190 /CLONE=CS0DK011YH09 (5 prime) /UG=Hs.1139 cold shock domain protein A /FL=gb:NM_003651.1 AL556190 Y box binding protein 3 YBX3 8531 NM_001145426 /// NM_003651 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009409 // response to cold // traceable author statement /// 0009566 // fertilization // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0048642 // negative regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0060546 // negative regulation of necroptotic process // inferred from mutant phenotype /// 0060547 // negative regulation of necrotic cell death // inferred from mutant phenotype /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred by curator /// 0071356 // cellular response to tumor necrosis factor // inferred from mutant phenotype /// 0071474 // cellular hyperosmotic response // inferred from mutant phenotype /// 1902219 // negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress // inferred from mutant phenotype /// 2000767 // positive regulation of cytoplasmic translation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005844 // polysome // inferred from electronic annotation /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0017048 // Rho GTPase binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay -214.22 1513.94 -2.73 0.03 0.05 -4.51
208768_x_at 208768_x_at D17652 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D17652.1 /DEF=Human mRNA for HBp15L22, complete cds. /FEA=mRNA /PROD=HBp15L22 /DB_XREF=gi:409069 /UG=Hs.99914 ribosomal protein L22 /FL=gb:D17652.1 D17652 ribosomal protein L22 RPL22 6146 NM_000983 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0046632 // alpha-beta T cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -595.22 2811.01 -2.73 0.03 0.05 -4.51
208761_s_at 208761_s_at U67122 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U67122.1 /DEF=Human ubiquitin-related protein SUMO-1 mRNA, complete cds. /FEA=mRNA /PROD=SUMO-1 /DB_XREF=gi:1762972 /UG=Hs.81424 ubiquitin-like 1 (sentrin) /FL=gb:U61397.1 gb:U38784.1 gb:U72722.1 gb:U67122.1 gb:U83117.1 gb:NM_003352.1 U67122 small ubiquitin-like modifier 1 SUMO1 7341 NM_001005781 /// NM_001005782 /// NM_003352 0006281 // DNA repair // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030578 // PML body organization // inferred from electronic annotation /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0032880 // regulation of protein localization // traceable author statement /// 0043392 // negative regulation of DNA binding // inferred from mutant phenotype /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0060021 // palate development // inferred from sequence or structural similarity /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0090204 // protein localization to nuclear pore // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 69.63 354.64 2.72 0.03 0.05 -4.51
208289_s_at 208289_s_at NM_004879 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004879.2 /DEF=Homo sapiens etoposide-induced mRNA (PIG8), mRNA. /FEA=mRNA /GEN=PIG8 /PROD=etoposide-induced mRNA /DB_XREF=gi:6631103 /UG=Hs.286027 etoposide-induced mRNA /FL=gb:NM_004879.2 NM_004879 etoposide induced 2.4 EI24 9538 NM_001007277 /// NM_001290135 /// NM_004879 /// NR_110769 /// NR_110770 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 38.10 150.95 2.72 0.03 0.05 -4.51
201785_at 201785_at NM_002933 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002933.1 /DEF=Homo sapiens ribonuclease, RNase A family, 1 (pancreatic) (RNASE1), mRNA. /FEA=mRNA /GEN=RNASE1 /PROD=ribonuclease, RNase A family, 1 (pancreatic) /DB_XREF=gi:4506546 /UG=Hs.78224 ribonuclease, RNase A family, 1 (pancreatic) /FL=gb:BC005324.1 gb:NM_002933.1 gb:D26129.1 NM_002933 ribonuclease, RNase A family, 1 (pancreatic) RNASE1 6035 NM_002933 /// NM_198232 /// NM_198234 /// NM_198235 0008152 // metabolic process // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004522 // pancreatic ribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016892 // endoribonuclease activity, producing 3'-phosphomonoesters // inferred from electronic annotation 104.65 252.88 2.72 0.03 0.05 -4.51
204806_x_at 204806_x_at NM_018950 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018950.1 /DEF=Homo sapiens major histocompatibility complex, class I, F (HLA-F), mRNA. /FEA=mRNA /GEN=HLA-F /PROD=major histocompatibility complex, class I, F /DB_XREF=gi:9665231 /UG=Hs.110309 major histocompatibility complex, class I, F /FL=gb:NM_018950.1 NM_018950 major histocompatibility complex, class I, F HLA-F 3134 NM_001098478 /// NM_001098479 /// NM_018950 /// XM_005249054 /// XM_005272809 /// XM_005274960 /// XM_005275115 /// XM_005275390 /// XM_005275547 /// XM_005275548 /// XM_006726089 /// XM_006726090 /// XM_006726091 /// XM_006726092 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0046978 // TAP1 binding // inferred from physical interaction /// 0046979 // TAP2 binding // inferred from physical interaction -100.38 231.69 -2.72 0.03 0.05 -4.51
212578_x_at 212578_x_at BF026595 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF026595 /FEA=EST /DB_XREF=gi:10734307 /DB_XREF=est:601672736F1 /CLONE=IMAGE:3955617 /UG=Hs.5174 ribosomal protein S17 BF026595 ribosomal protein S17 RPS17 6218 NM_001021 /// NM_001199057 /// NR_111943 /// NR_111944 0000028 // ribosomal small subunit assembly // not recorded /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // non-traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034101 // erythrocyte homeostasis // inferred from mutant phenotype /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -444.77 2574.71 -2.72 0.03 0.05 -4.51
204166_at 204166_at NM_014963 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014963.1 /DEF=Homo sapiens KIAA0963 protein (KIAA0963), mRNA. /FEA=mRNA /GEN=KIAA0963 /PROD=KIAA0963 protein /DB_XREF=gi:7662409 /UG=Hs.7724 KIAA0963 protein /FL=gb:AB023180.1 gb:NM_014963.1 NM_014963 strawberry notch homolog 2 (Drosophila) SBNO2 22904 NM_001100122 /// NM_014963 /// XM_005259519 /// XM_005259520 0002281 // macrophage activation involved in immune response // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0050727 // regulation of inflammatory response // inferred from mutant phenotype -80.47 69.41 -2.72 0.03 0.05 -4.51
202153_s_at 202153_s_at NM_016553 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016553.1 /DEF=Homo sapiens hypothetical protein (DKFZp547L134), mRNA. /FEA=mRNA /GEN=DKFZp547L134 /PROD=hypothetical protein /DB_XREF=gi:7705354 /UG=Hs.9877 hypothetical protein /FL=gb:AL162061.1 gb:NM_016553.1 NM_016553 nucleoporin 62kDa NUP62 23636 NM_001193357 /// NM_012346 /// NM_016553 /// NM_153718 /// NM_153719 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from direct assay /// 0007166 // cell surface receptor signaling pathway // inferred from sequence or structural similarity /// 0007166 // cell surface receptor signaling pathway // non-traceable author statement /// 0007569 // cell aging // inferred from electronic annotation /// 0008219 // cell death // inferred from mutant phenotype /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008645 // hexose transport // traceable author statement /// 0009755 // hormone-mediated signaling pathway // non-traceable author statement /// 0009966 // regulation of signal transduction // non-traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043069 // negative regulation of programmed cell death // inferred from direct assay /// 0043069 // negative regulation of programmed cell death // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from sequence or structural similarity /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // non-traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0046578 // regulation of Ras protein signal transduction // non-traceable author statement /// 0046580 // negative regulation of Ras protein signal transduction // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // inferred from sequence or structural similarity /// 0005737 // cytoplasm // non-traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031074 // nucleocytoplasmic shuttling complex // non-traceable author statement /// 0031965 // nuclear membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0046930 // pore complex // non-traceable author statement 0003682 // chromatin binding // non-traceable author statement /// 0005487 // nucleocytoplasmic transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017056 // structural constituent of nuclear pore // inferred from electronic annotation /// 0030159 // receptor signaling complex scaffold activity // inferred from direct assay /// 0030159 // receptor signaling complex scaffold activity // inferred from sequence or structural similarity /// 0042169 // SH2 domain binding // inferred from direct assay /// 0042169 // SH2 domain binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0046966 // thyroid hormone receptor binding // inferred from physical interaction /// 0046966 // thyroid hormone receptor binding // inferred from sequence or structural similarity /// 0051425 // PTB domain binding // inferred from electronic annotation 64.88 203.49 2.72 0.03 0.05 -4.51
203227_s_at 203227_s_at NM_005981 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005981.1 /DEF=Homo sapiens sarcoma amplified sequence (SAS), mRNA. /FEA=mRNA /GEN=SAS /PROD=sarcoma amplified sequence /DB_XREF=gi:5174666 /UG=Hs.50984 sarcoma amplified sequence /FL=gb:U01160.1 gb:NM_005981.1 NM_005981 tetraspanin 31 TSPAN31 6302 NM_005981 /// XM_005269074 0008284 // positive regulation of cell proliferation // traceable author statement 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 32.90 73.58 2.72 0.03 0.05 -4.51
217800_s_at 217800_s_at NM_030571 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030571.1 /DEF=Homo sapiens hypothetical protein MGC10924 similar to Nedd4 WW-binding protein 5 (MGC10924), mRNA. /FEA=mRNA /GEN=MGC10924 /PROD=hypothetical protein MGC10924 similar to Nedd4WW-binding protein 5 /DB_XREF=gi:13386479 /UG=Hs.9788 hypothetical protein MGC10924 similar to Nedd4 WW-binding protein 5 /FL=gb:BC004317.1 gb:NM_030571.1 NM_030571 Nedd4 family interacting protein 1 NDFIP1 80762 NM_030571 0002761 // regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0002829 // negative regulation of type 2 immune response // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0031398 // positive regulation of protein ubiquitination // inferred from mutant phenotype /// 0032410 // negative regulation of transporter activity // inferred from mutant phenotype /// 0032713 // negative regulation of interleukin-4 production // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred from electronic annotation /// 0045619 // regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0048294 // negative regulation of isotype switching to IgE isotypes // inferred from electronic annotation /// 0048302 // regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0051224 // negative regulation of protein transport // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0050699 // WW domain binding // inferred from electronic annotation 69.30 299.62 2.72 0.03 0.05 -4.51
208686_s_at 208686_s_at D42040 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D42040.1 /DEF=Human mRNA for KIAA9001 gene, complete cds. /FEA=mRNA /GEN=KIAA9001 /DB_XREF=gi:577292 /UG=Hs.75243 bromodomain-containing 2 /FL=gb:NM_005104.2 gb:M80613.1 gb:D42040.1 D42040 bromodomain containing 2 BRD2 6046 NM_001113182 /// NM_001199455 /// NM_001199456 /// NM_001291986 /// NM_005104 /// NR_037625 /// XR_241911 /// XR_246967 /// XR_247375 /// XR_247406 /// XR_247427 0006334 // nucleosome assembly // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0007283 // spermatogenesis // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay -58.72 154.64 -2.72 0.03 0.05 -4.51
201361_at 201361_at NM_024092 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024092.1 /DEF=Homo sapiens hypothetical protein MGC5508 (MGC5508), mRNA. /FEA=mRNA /GEN=MGC5508 /PROD=hypothetical protein MGC5508 /DB_XREF=gi:13129091 /UG=Hs.13662 hypothetical protein MGC5508 /FL=gb:BC001309.1 gb:NM_024092.1 NM_024092 transmembrane protein 109 TMEM109 79073 NM_024092 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from mutant phenotype /// 0071480 // cellular response to gamma radiation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 73.48 297.24 2.72 0.03 0.05 -4.51
201097_s_at 201097_s_at NM_001660 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001660.2 /DEF=Homo sapiens ADP-ribosylation factor 4 (ARF4), mRNA. /FEA=mRNA /GEN=ARF4 /PROD=ADP-ribosylation factor 4 /DB_XREF=gi:6995998 /UG=Hs.75290 ADP-ribosylation factor 4 /FL=gb:BC003364.1 gb:M36341.1 gb:NM_001660.2 NM_001660 ADP-ribosylation factor 4 ARF4 378 NM_001660 0006471 // protein ADP-ribosylation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0031584 // activation of phospholipase D activity // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048678 // response to axon injury // inferred from electronic annotation /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation 191.90 1546.88 2.71 0.03 0.05 -4.51
206686_at 206686_at NM_002610 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002610.2 /DEF=Homo sapiens pyruvate dehydrogenase kinase, isoenzyme 1 (PDK1), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=PDK1 /PROD=pyruvate dehydrogenase kinase, isoenzyme 1 /DB_XREF=gi:7108358 /UG=Hs.61712 pyruvate dehydrogenase kinase, isoenzyme 1 /FL=gb:L42450.1 gb:NM_002610.2 NM_002610 pyruvate dehydrogenase kinase, isozyme 1 PDK1 5163 NM_001278549 /// NM_002610 /// NR_103729 /// NR_103731 /// XM_006712594 /// XM_006712595 /// XR_427093 /// XR_427094 /// XR_427095 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006090 // pyruvate metabolic process // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // traceable author statement /// 0010906 // regulation of glucose metabolic process // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0097411 // hypoxia-inducible factor-1alpha signaling pathway // inferred from mutant phenotype 0005739 // mitochondrion // traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0005967 // mitochondrial pyruvate dehydrogenase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from direct assay /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -29.93 21.66 -2.71 0.03 0.05 -4.51
209009_at 209009_at BC001169 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001169.1 /DEF=Homo sapiens, Similar to esterase 10, clone MGC:1873, mRNA, complete cds. /FEA=mRNA /PROD=Similar to esterase 10 /DB_XREF=gi:12654662 /UG=Hs.82193 esterase Dformylglutathione hydrolase /FL=gb:BC001169.1 gb:AF112219.1 BC001169 esterase D ESD 2098 NM_001984 /// XM_005266278 0006508 // proteolysis // inferred from electronic annotation /// 0046294 // formaldehyde catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from direct assay /// 0018738 // S-formylglutathione hydrolase activity // inferred from electronic annotation /// 0047374 // methylumbelliferyl-acetate deacetylase activity // inferred from electronic annotation /// 0052689 // carboxylic ester hydrolase activity // non-traceable author statement 99.67 414.31 2.71 0.03 0.05 -4.51
208991_at 208991_at AA634272 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA634272 /FEA=EST /DB_XREF=gi:2557486 /DB_XREF=est:ac75h05.s1 /CLONE=IMAGE:868473 /UG=Hs.321677 signal transducer and activator of transcription 3 (acute-phase response factor) /FL=gb:BC000627.1 gb:NM_003150.1 gb:L29277.1 AA634272 signal transducer and activator of transcription 3 (acute-phase response factor) STAT3 6774 NM_003150 /// NM_139276 /// NM_213662 /// XM_005257616 /// XM_005257617 /// XM_005257618 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001659 // temperature homeostasis // inferred from sequence or structural similarity /// 0001754 // eye photoreceptor cell differentiation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006928 // cellular component movement // traceable author statement /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // non-traceable author statement /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0019953 // sexual reproduction // inferred from sequence or structural similarity /// 0030522 // intracellular receptor signaling pathway // inferred from direct assay /// 0032355 // response to estradiol // inferred from direct assay /// 0032870 // cellular response to hormone stimulus // inferred from direct assay /// 0034097 // response to cytokine // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042755 // eating behavior // inferred from sequence or structural similarity /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048708 // astrocyte differentiation // inferred from sequence or structural similarity /// 0060019 // radial glial cell differentiation // inferred from sequence or structural similarity /// 0060396 // growth hormone receptor signaling pathway // inferred from direct assay /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from direct assay /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from sequence or structural similarity /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // traceable author statement /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0070102 // interleukin-6-mediated signaling pathway // inferred from direct assay /// 2001223 // negative regulation of neuron migration // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0031730 // CCR5 chemokine receptor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from sequence or structural similarity 94.40 446.73 2.71 0.03 0.05 -4.51
208915_s_at 208915_s_at AF190863 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF190863.1 /DEF=Homo sapiens ADP-ribosylation factor binding protein GGA2 (GGA2) mRNA, complete cds. /FEA=mRNA /GEN=GGA2 /PROD=ADP-ribosylation factor binding protein GGA2 /DB_XREF=gi:6179913 /UG=Hs.155546 KIAA1080 protein; Golgi-associated, gamma-adaptin ear containing, ARF-binding protein 2 /FL=gb:AF190863.1 gb:AF233522.1 gb:AF165531.1 gb:NM_015044.1 AF190863 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 GGA2 23062 NM_015044 /// XR_429674 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030306 // ADP-ribosylation factor binding // inferred from direct assay 50.30 114.97 2.71 0.03 0.05 -4.51
212375_at 212375_at AL563727 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL563727 /FEA=EST /DB_XREF=gi:12913403 /DB_XREF=est:AL563727 /CLONE=CS0DD007YL16 (3 prime) /UG=Hs.306094 trinucleotide repeat containing 12 AL563727 E1A binding protein p400 EP400 57634 NM_015409 0006325 // chromatin organization // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from direct assay /// 0043968 // histone H2A acetylation // inferred from direct assay 0000812 // Swr1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 31.60 77.20 2.71 0.03 0.05 -4.51
219048_at 219048_at NM_012327 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012327.1 /DEF=Homo sapiens phosphatidylinositol glycan, class N (PIGN), mRNA. /FEA=mRNA /GEN=PIGN /PROD=phosphatidylinositol glycan, class N /DB_XREF=gi:6912499 /UG=Hs.108787 phosphatidylinositol glycan, class N /FL=gb:AF109219.1 gb:NM_012327.1 NM_012327 phosphatidylinositol glycan anchor biosynthesis, class N PIGN 23556 NM_012327 /// NM_176787 0006501 // C-terminal protein lipidation // traceable author statement /// 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 26.55 30.52 2.70 0.03 0.05 -4.51
201274_at 201274_at NM_002790 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002790.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 5 (PSMA5), mRNA. /FEA=mRNA /GEN=PSMA5 /PROD=proteasome (prosome, macropain) subunit, alphatype, 5 /DB_XREF=gi:4506186 /UG=Hs.76913 proteasome (prosome, macropain) subunit, alpha type, 5 /FL=gb:NM_002790.1 NM_002790 proteasome (prosome, macropain) subunit, alpha type, 5 PSMA5 5686 NM_001199772 /// NM_001199773 /// NM_001199774 /// NM_002790 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -48.35 507.98 -2.70 0.03 0.05 -4.51
211964_at 211964_at X05610 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X05610.1 /DEF=Human mRNA for type IV collagen alpha (2) chain. /FEA=mRNA /PROD=alpha (2) chain /DB_XREF=gi:29550 /UG=Hs.75617 collagen, type IV, alpha 2 X05610 collagen, type IV, alpha 2 COL4A2 1284 NM_001846 0001525 // angiogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // non-traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005587 // collagen type IV trimer // traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -252.92 1430.11 -2.70 0.03 0.05 -4.51
209277_at 209277_at AL574096 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL574096 /FEA=EST /DB_XREF=gi:12933969 /DB_XREF=est:AL574096 /CLONE=CS0DI040YI17 (3 prime) /UG=Hs.295944 tissue factor pathway inhibitor 2 /FL=gb:BC005330.1 gb:L27624.1 gb:D29992.1 gb:NM_006528.1 AL574096 tissue factor pathway inhibitor 2 TFPI2 7980 NM_001271003 /// NM_001271004 /// NM_006528 0006184 // GTP catabolic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007599 // hemostasis // inferred from electronic annotation /// 0007602 // phototransduction // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0097381 // photoreceptor disc membrane // traceable author statement 0003924 // GTPase activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 204.27 368.26 2.70 0.03 0.05 -4.51
200866_s_at 200866_s_at M32221 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M32221.1 /DEF=Human saposin proteins A-D mRNA, complete cds. /FEA=mRNA /GEN=PSAP /DB_XREF=gi:337761 /UG=Hs.78575 prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) /FL=gb:NM_002778.1 gb:BC004275.1 gb:J03077.1 gb:D00422.1 gb:M60255.1 gb:M32221.1 gb:M60257.1 gb:M60258.1 gb:M81355.1 M32221 prosaposin PSAP 5660 NM_001042465 /// NM_001042466 /// NM_002778 0002576 // platelet degranulation // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0006869 // lipid transport // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0019216 // regulation of lipid metabolic process // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0043408 // regulation of MAPK cascade // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048589 // developmental growth // inferred from electronic annotation /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016021 // integral component of membrane // traceable author statement /// 0043202 // lysosomal lumen // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // traceable author statement /// 0008289 // lipid binding // traceable author statement -186.90 854.77 -2.70 0.03 0.05 -4.51
210145_at 210145_at M68874 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M68874.1 /DEF=Homo sapiens phosphatidylcholine 2-acylhydrolase (cPLA2) mRNA, complete cds. /FEA=mRNA /GEN=cPLA2 /PROD=phosphatidylcholine 2-acylhydrolase /DB_XREF=gi:190003 /UG=Hs.211587 phospholipase A2, group IVA (cytosolic, calcium-dependent) /FL=gb:M68874.1 gb:M72393.1 M68874 phospholipase A2, group IVA (cytosolic, calcium-dependent) PLA2G4A 5321 NM_024420 /// XM_005245267 /// XM_005245268 /// XR_426785 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006654 // phosphatidic acid biosynthetic process // traceable author statement /// 0006663 // platelet activating factor biosynthetic process // non-traceable author statement /// 0006690 // icosanoid metabolic process // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0035965 // cardiolipin acyl-chain remodeling // traceable author statement /// 0036148 // phosphatidylglycerol acyl-chain remodeling // traceable author statement /// 0036149 // phosphatidylinositol acyl-chain remodeling // traceable author statement /// 0036150 // phosphatidylserine acyl-chain remodeling // traceable author statement /// 0036151 // phosphatidylcholine acyl-chain remodeling // traceable author statement /// 0036152 // phosphatidylethanolamine acyl-chain remodeling // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046456 // icosanoid biosynthetic process // inferred from electronic annotation /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004620 // phospholipase activity // inferred from electronic annotation /// 0004622 // lysophospholipase activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferred from direct assay /// 0004623 // phospholipase A2 activity // non-traceable author statement /// 0004623 // phospholipase A2 activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047498 // calcium-dependent phospholipase A2 activity // not recorded -58.60 263.68 -2.70 0.03 0.05 -4.51
211554_s_at 211554_s_at AF149794 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF149794.1 /DEF=Homo sapiens apoptotic protease activating factor 1 (APAF1) mRNA, complete cds. /FEA=CDS /GEN=APAF1 /PROD=apoptotic protease activating factor 1 /DB_XREF=gi:4929486 /UG=Hs.77579 apoptotic protease activating factor /FL=gb:AF248734.1 gb:AF149794.1 AF149794 apoptotic peptidase activating factor 1 APAF1 317 NM_001160 /// NM_013229 /// NM_181861 /// NM_181868 /// NM_181869 /// XR_429095 0001843 // neural tube closure // inferred from electronic annotation /// 0006309 // apoptotic DNA fragmentation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006952 // defense response // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0008635 // activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c // inferred from direct assay /// 0008635 // activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0072432 // response to G1 DNA damage checkpoint signaling // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043293 // apoptosome // inferred from direct assay /// 0043293 // apoptosome // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // non-traceable author statement /// 0016505 // peptidase activator activity involved in apoptotic process // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043531 // ADP binding // inferred from electronic annotation -35.60 97.62 -2.70 0.03 0.05 -4.52
217188_s_at 217188_s_at AC007182 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC007182 /DEF=untitled /FEA=CDS_3 /DB_XREF=gi:5708446 /UG=Hs.15106 chromosome 14 open reading frame 1 AC007182 chromosome 14 open reading frame 1 C14orf1 11161 NM_007176 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0030133 // transport vesicle // inferred from direct assay 28.48 115.04 2.70 0.03 0.05 -4.52
202573_at 202573_at AL530441 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL530441 /FEA=EST /DB_XREF=gi:12793934 /DB_XREF=est:AL530441 /CLONE=CS0DD007YK14 (3 prime) /UG=Hs.181390 casein kinase 1, gamma 2 /FL=gb:NM_001319.2 gb:U89896.1 AL530441 casein kinase 1, gamma 2 CSNK1G2 1455 NM_001319 /// XM_005259498 /// XM_005259499 /// XM_005259500 /// XM_005259501 /// XM_005259502 /// XR_430129 0006468 // protein phosphorylation // traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from electronic annotation 37.05 140.18 2.70 0.03 0.05 -4.52
212566_at 212566_at AL523310 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523310 /FEA=EST /DB_XREF=gi:12786803 /DB_XREF=est:AL523310 /CLONE=CS0DC001YN06 (3 prime) /UG=Hs.150580 putative translation initiation factor AL523310 microtubule-associated protein 4 MAP4 4134 NM_001134364 /// NM_001134365 /// NM_002375 /// NM_030884 /// NM_030885 /// XM_005265133 /// XM_005265134 /// XM_005265135 /// XM_005265138 /// XM_005265139 /// XM_005265147 /// XM_005265155 /// XM_005265157 /// XM_005265158 /// XM_005265159 /// XM_006713140 /// XM_006713141 /// XM_006713142 /// XM_006713143 /// XM_006713144 /// XM_006713145 /// XM_006713146 /// XM_006713147 /// XM_006713148 /// XM_006713149 /// XM_006713150 /// XM_006713151 /// XM_006713152 /// XM_006713153 /// XM_006713154 /// XM_006713155 /// XM_006713156 /// XM_006713157 /// XM_006713158 /// XM_006713159 /// XM_006713160 /// XM_006713161 /// XM_006713162 /// XM_006713163 0007052 // mitotic spindle organization // inferred from mutant phenotype /// 0051012 // microtubule sliding // inferred from mutant phenotype /// 0051294 // establishment of spindle orientation // inferred from genetic interaction /// 0051294 // establishment of spindle orientation // inferred from mutant phenotype /// 0051301 // cell division // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0015631 // tubulin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 150.30 338.20 2.69 0.03 0.05 -4.52
221756_at 221756_at AL540260 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL540260 /FEA=EST /DB_XREF=gi:12870241 /DB_XREF=est:AL540260 /CLONE=CS0DF032YF03 (3 prime) /UG=Hs.26670 Human PAC clone RP3-515N1 from 22q11.2-q22 AL540260 phosphoinositide-3-kinase interacting protein 1 PIK3IP1 113791 NM_001135911 /// NM_052880 0014067 // negative regulation of phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0043553 // negative regulation of phosphatidylinositol 3-kinase activity // inferred from direct assay /// 0043553 // negative regulation of phosphatidylinositol 3-kinase activity // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0036313 // phosphatidylinositol 3-kinase catalytic subunit binding // inferred from physical interaction -29.60 44.20 -2.69 0.03 0.05 -4.52
209535_s_at 209535_s_at AF127481 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF127481.1 /DEF=Homo sapiens non-ocogenic Rho GTPase-specific GTP exchange factor (proto-LBC) mRNA, complete cds. /FEA=mRNA /GEN=proto-LBC /PROD=non-ocogenic Rho GTPase-specific GTP exchangefactor /DB_XREF=gi:5199315 /UG=Hs.301946 lymphoid blast crisis oncogene /FL=gb:AF127481.1 AF127481 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0010611 // regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051168 // nuclear export // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1900169 // regulation of glucocorticoid mediated signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004691 // cAMP-dependent protein kinase activity // inferred from electronic annotation /// 0004691 // cAMP-dependent protein kinase activity // non-traceable author statement /// 0004871 // signal transducer activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051018 // protein kinase A binding // inferred from electronic annotation -77.15 122.08 -2.69 0.03 0.05 -4.52
202553_s_at 202553_s_at NM_015484 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015484.1 /DEF=Homo sapiens GCIP-interacting protein p29 (P29), mRNA. /FEA=mRNA /GEN=P29 /PROD=GCIP-interacting protein p29 /DB_XREF=gi:7661635 /UG=Hs.20013 GCIP-interacting protein p29 /FL=gb:AF273089.1 gb:AL080166.1 gb:NM_015484.1 NM_015484 SYF2 pre-mRNA-splicing factor SYF2 25949 NM_015484 /// NM_207170 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0048568 // embryonic organ development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay -31.83 143.04 -2.69 0.03 0.05 -4.52
212241_at 212241_at AI632774 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI632774 /FEA=EST /DB_XREF=gi:4684104 /DB_XREF=est:wa35a11.x1 /CLONE=IMAGE:2300060 /UG=Hs.6283 DKFZP586F1918 protein AI632774 GRINL1A complex locus 1 /// myocardial zonula adherens protein /// polymerase (RNA) II (DNA directed) polypeptide M GCOM1 /// MYZAP /// POLR2M 81488 /// 145781 /// 100820829 NM_001018090 /// NM_001018091 /// NM_001018095 /// NM_001018096 /// NM_001018099 /// NM_001018100 /// NM_001018102 /// NM_001285900 /// NM_015532 /// NM_152451 /// NR_027390 /// NR_104367 /// NR_104368 /// NR_104369 /// NR_104370 /// NR_104371 0032774 // RNA biosynthetic process // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from sequence or structural similarity /// 0051685 // maintenance of ER location // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from sequence or structural similarity /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from sequence or structural similarity /// 0031674 // I band // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -51.65 121.43 -2.69 0.03 0.05 -4.52
203345_s_at 203345_s_at AI566096 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI566096 /FEA=EST /DB_XREF=gi:4524548 /DB_XREF=est:tn53d02.x1 /CLONE=IMAGE:2172099 /UG=Hs.31016 putative DNA binding protein /FL=gb:AF072814.1 gb:NM_007358.1 AI566096 metal response element binding transcription factor 2 MTF2 22823 NM_001164391 /// NM_001164392 /// NM_001164393 /// NM_007358 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007379 // segment specification // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048863 // stem cell differentiation // inferred from sequence or structural similarity /// 0061086 // negative regulation of histone H3-K27 methylation // inferred from sequence or structural similarity /// 0061087 // positive regulation of histone H3-K27 methylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0035098 // ESC/E(Z) complex // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 37.70 156.90 2.69 0.03 0.05 -4.52
203448_s_at 203448_s_at AI347136 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI347136 /FEA=EST /DB_XREF=gi:4084342 /DB_XREF=est:tc04a11.x1 /CLONE=IMAGE:2062844 /UG=Hs.194562 telomeric repeat binding factor (NIMA-interacting) 1 /FL=gb:U40705.1 gb:NM_017489.1 AI347136 telomeric repeat binding factor (NIMA-interacting) 1 TERF1 7013 NM_003218 /// NM_017489 /// XM_005251291 /// XM_005251292 0000086 // G2/M transition of mitotic cell cycle // inferred from expression pattern /// 0000723 // telomere maintenance // traceable author statement /// 0001309 // age-dependent telomere shortening // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007004 // telomere maintenance via telomerase // inferred from mutant phenotype /// 0007004 // telomere maintenance via telomerase // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // inferred from mutant phenotype /// 0008156 // negative regulation of DNA replication // inferred from direct assay /// 0010834 // telomere maintenance via telomere shortening // inferred from mutant phenotype /// 0031116 // positive regulation of microtubule polymerization // inferred from direct assay /// 0032211 // negative regulation of telomere maintenance via telomerase // inferred from genetic interaction /// 0032214 // negative regulation of telomere maintenance via semi-conservative replication // non-traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051974 // negative regulation of telomerase activity // inferred from genetic interaction /// 1900119 // positive regulation of execution phase of apoptosis // inferred from direct assay 0000781 // chromosome, telomeric region // inferred from direct assay /// 0000783 // nuclear telomere cap complex // inferred from direct assay /// 0000783 // nuclear telomere cap complex // inferred from sequence or structural similarity /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003677 // DNA binding // non-traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003691 // double-stranded telomeric DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0008301 // DNA binding, bending // inferred from direct assay /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from direct assay /// 0010521 // telomerase inhibitor activity // inferred from genetic interaction /// 0042162 // telomeric DNA binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay 33.57 64.11 2.69 0.03 0.06 -4.52
200926_at 200926_at NM_001025 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001025.1 /DEF=Homo sapiens ribosomal protein S23 (RPS23), mRNA. /FEA=mRNA /GEN=RPS23 /PROD=ribosomal protein S23 /DB_XREF=gi:4506700 /UG=Hs.3463 ribosomal protein S23 /FL=gb:D14530.1 gb:NM_001025.1 NM_001025 ribosomal protein S23 RPS23 6228 NM_001025 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -1020.38 4371.79 -2.69 0.03 0.06 -4.52
218387_s_at 218387_s_at NM_012088 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012088.1 /DEF=Homo sapiens 6-phosphogluconolactonase (PGLS), mRNA. /FEA=mRNA /GEN=PGLS /PROD=6-phosphogluconolactonase /DB_XREF=gi:6912585 /UG=Hs.100071 6-phosphogluconolactonase /FL=gb:NM_012088.1 NM_012088 6-phosphogluconolactonase PGLS 25796 NM_012088 /// XM_005259849 0005975 // carbohydrate metabolic process // traceable author statement /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016787 // hydrolase activity // inferred from electronic annotation /// 0017057 // 6-phosphogluconolactonase activity // inferred from direct assay /// 0048029 // monosaccharide binding // inferred from electronic annotation -48.75 236.05 -2.68 0.03 0.06 -4.52
208918_s_at 208918_s_at AI334128 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI334128 /FEA=EST /DB_XREF=gi:4070687 /DB_XREF=est:qq07e12.x1 /CLONE=IMAGE:1931854 /UG=Hs.220324 hypothetical protein FLJ13052 /FL=gb:BC001709.1 AI334128 NAD kinase NADK 65220 NM_001198993 /// NM_001198994 /// NM_001198995 /// NM_023018 /// XM_005244778 /// XM_006710837 /// XM_006710838 /// XM_006710839 /// XR_241040 0006741 // NADP biosynthetic process // inferred from electronic annotation /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // non-traceable author statement /// 0019674 // NAD metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046034 // ATP metabolic process // non-traceable author statement 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003951 // NAD+ kinase activity // inferred from direct assay /// 0003951 // NAD+ kinase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 33.00 134.50 2.68 0.03 0.06 -4.52
201648_at 201648_at AL039831 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL039831 /FEA=EST /DB_XREF=gi:5935215 /DB_XREF=est:DKFZp434D1112_s1 /CLONE=DKFZp434D1112 /UG=Hs.50651 Janus kinase 1 (a protein tyrosine kinase) /FL=gb:M64174.1 gb:NM_002227.1 AL039831 Janus kinase 1 JAK1 3716 NM_002227 /// XM_005270841 /// XM_006710624 0006468 // protein phosphorylation // traceable author statement /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0038110 // interleukin-2-mediated signaling pathway // inferred from direct assay /// 0046677 // response to antibiotic // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060338 // regulation of type I interferon-mediated signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005131 // growth hormone receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0031730 // CCR5 chemokine receptor binding // inferred from electronic annotation -205.05 1141.28 -2.68 0.03 0.06 -4.52
200834_s_at 200834_s_at NM_001024 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001024.1 /DEF=Homo sapiens ribosomal protein S21 (RPS21), mRNA. /FEA=mRNA /GEN=RPS21 /PROD=ribosomal protein S21 /DB_XREF=gi:4506698 /UG=Hs.1948 ribosomal protein S21 /FL=gb:L04483.1 gb:NM_001024.1 NM_001024 ribosomal protein S21 RPS21 6227 NM_001024 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000447 // endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0000461 // endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030154 // cell differentiation // non-traceable author statement /// 0042274 // ribosomal small subunit biogenesis // not recorded /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction -287.95 2680.53 -2.68 0.03 0.06 -4.52
204618_s_at 204618_s_at NM_005254 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005254.2 /DEF=Homo sapiens GA-binding protein transcription factor, beta subunit 1 (53kD) (GABPB1), transcript variant beta, mRNA. /FEA=mRNA /GEN=GABPB1 /PROD=GA-binding protein transcription factor, betasubunit 1 (53kD), isoform beta 1 /DB_XREF=gi:8051592 /UG=Hs.78915 GA-binding protein transcription factor, beta subunit 1 (53kD) /FL=gb:U13045.1 gb:NM_005254.2 NM_005254 GA binding protein transcription factor, beta subunit 1 GABPB1 2553 NM_002041 /// NM_005254 /// NM_016654 /// NM_016655 /// NM_181427 /// XM_005254273 /// XM_005254274 /// XM_006720455 /// XM_006720456 /// XM_006720457 /// XM_006720458 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay -86.40 342.55 -2.68 0.03 0.06 -4.52
217313_at 217313_at AC004692 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC004692 /DEF=Homo sapiens PAC clone RP5-1107K12 from 7p12-p14 /FEA=CDS /DB_XREF=gi:3135282 /UG=Hs.247699 Homo sapiens PAC clone RP5-1107K12 from 7p12-p14 AC004692 AC004692.5 -44.20 103.67 -2.68 0.03 0.06 -4.52
203831_at 203831_at NM_014925 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014925.1 /DEF=Homo sapiens KIAA1002 protein (KIAA1002), mRNA. /FEA=mRNA /GEN=KIAA1002 /PROD=KIAA1002 protein /DB_XREF=gi:7662441 /UG=Hs.102483 KIAA1002 protein /FL=gb:AB023219.1 gb:AF113695.1 gb:NM_014925.1 NM_014925 R3H domain containing 2 R3HDM2 22864 NM_014925 /// XM_005268711 /// XM_005268715 /// XM_005268722 /// XM_005268724 /// XM_005268725 /// XM_005268727 /// XM_005268728 /// XM_005268729 /// XM_006719277 /// XM_006719278 /// XM_006719279 /// XM_006719280 /// XM_006719281 /// XM_006719282 /// XM_006719283 /// XM_006719284 /// XM_006719285 /// XM_006719286 /// XM_006719287 /// XM_006719288 /// XM_006719289 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -49.10 137.97 -2.67 0.03 0.06 -4.52
200823_x_at 200823_x_at NM_000992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000992.1 /DEF=Homo sapiens ribosomal protein L29 (RPL29), mRNA. /FEA=mRNA /GEN=RPL29 /PROD=ribosomal protein L29 /DB_XREF=gi:4506628 /UG=Hs.183698 ribosomal protein L29 /FL=gb:U49083.1 gb:NM_000992.1 gb:U10248.1 NM_000992 ribosomal protein L29 RPL29 6159 NM_000992 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007566 // embryo implantation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -322.53 1701.09 -2.67 0.03 0.06 -4.52
203064_s_at 203064_s_at NM_004514 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004514.1 /DEF=Homo sapiens interleukin enhancer binding factor 1 (ILF1), mRNA. /FEA=mRNA /GEN=ILF1 /PROD=interleukin enhancer binding factor 1 /DB_XREF=gi:4758599 /UG=Hs.296281 interleukin enhancer binding factor 1 /FL=gb:U58196.1 gb:NM_004514.1 NM_004514 forkhead box K2 FOXK2 3607 NM_004514 /// NM_181430 /// NM_181431 /// XM_006722281 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007389 // pattern specification process // not recorded /// 0009790 // embryo development // /// 0009888 // tissue development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008301 // DNA binding, bending // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -42.77 158.49 -2.67 0.03 0.06 -4.52
214319_at 214319_at W58342 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W58342 /FEA=EST /DB_XREF=gi:1365125 /DB_XREF=est:zd25a08.s1 /CLONE=IMAGE:341654 /UG=Hs.181304 putative gene product W58342 furry homolog (Drosophila) FRY 10129 NM_023037 /// XM_006719749 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 84.98 162.54 2.67 0.03 0.06 -4.52
211969_at 211969_at BG420237 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG420237 /FEA=EST /DB_XREF=gi:13326743 /DB_XREF=est:602448244F1 /CLONE=IMAGE:4586914 /UG=Hs.289088 heat shock 90kD protein 1, alpha /FL=gb:NM_005348.1 BG420237 heat shock protein 90kDa alpha (cytosolic), class A member 1 HSP90AA1 3320 NM_001017963 /// NM_005348 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001764 // neuron migration // inferred from electronic annotation /// 0003009 // skeletal muscle contraction // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006457 // protein folding // inferred from electronic annotation /// 0006839 // mitochondrial transport // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009408 // response to heat // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0010592 // positive regulation of lamellipodium assembly // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042026 // protein refolding // traceable author statement /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045040 // protein import into mitochondrial outer membrane // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051131 // chaperone-mediated protein complex assembly // inferred from direct assay /// 0060452 // positive regulation of cardiac muscle contraction // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // traceable author statement /// 0002134 // UTP binding // inferred from electronic annotation /// 0002135 // CTP binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017098 // sulfonylurea receptor binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0030235 // nitric-oxide synthase regulator activity // inferred from direct assay /// 0030911 // TPR domain binding // inferred from direct assay /// 0030911 // TPR domain binding // traceable author statement /// 0032564 // dATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0044325 // ion channel binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 270.43 1254.66 2.67 0.03 0.06 -4.52
202299_s_at 202299_s_at NM_006402 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006402.1 /DEF=Homo sapiens hepatitis B virus x-interacting protein (9.6kD) (XIP), mRNA. /FEA=mRNA /GEN=XIP /PROD=hepatitis B virus x-interacting protein /DB_XREF=gi:5454169 /UG=Hs.80464 hepatitis B virus x-interacting protein (9.6kD) /FL=gb:AF029890.1 gb:NM_006402.1 NM_006402 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 LAMTOR5 10542 NM_006402 0008361 // regulation of cell size // inferred from mutant phenotype /// 0009615 // response to virus // traceable author statement /// 0019079 // viral genome replication // inferred from electronic annotation /// 0032008 // positive regulation of TOR signaling // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0061462 // protein localization to lysosome // inferred from mutant phenotype /// 0071230 // cellular response to amino acid stimulus // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0071986 // Ragulator complex // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from direct assay 55.77 441.64 2.67 0.03 0.06 -4.52
201339_s_at 201339_s_at NM_002979 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002979.1 /DEF=Homo sapiens sterol carrier protein 2 (SCP2), mRNA. /FEA=mRNA /GEN=SCP2 /PROD=sterol carrier protein 2 /DB_XREF=gi:4506822 /UG=Hs.75760 sterol carrier protein 2 /FL=gb:M75883.1 gb:M75884.1 gb:M55421.1 gb:NM_002979.1 NM_002979 sterol carrier protein 2 SCP2 6342 NM_001007098 /// NM_001007099 /// NM_001007100 /// NM_001007250 /// NM_001193599 /// NM_001193600 /// NM_001193617 /// NM_002979 /// XM_005271103 /// XM_005271104 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006699 // bile acid biosynthetic process // traceable author statement /// 0006701 // progesterone biosynthetic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // traceable author statement /// 0015914 // phospholipid transport // inferred from direct assay /// 0032385 // positive regulation of intracellular cholesterol transport // inferred from direct assay /// 0032385 // positive regulation of intracellular cholesterol transport // non-traceable author statement /// 0032959 // inositol trisphosphate biosynthetic process // inferred from direct assay /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // traceable author statement /// 0033559 // unsaturated fatty acid metabolic process // traceable author statement /// 0036109 // alpha-linolenic acid metabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045940 // positive regulation of steroid metabolic process // inferred from direct assay /// 0072659 // protein localization to plasma membrane // inferred from direct assay /// 1901373 // lipid hydroperoxide transport // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0008526 // phosphatidylinositol transporter activity // inferred from direct assay /// 0015485 // cholesterol binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation /// 0033814 // propanoyl-CoA C-acyltransferase activity // inferred from electronic annotation /// 0036042 // long-chain fatty acyl-CoA binding // inferred from direct assay /// 0070538 // oleic acid binding // inferred from direct assay 52.75 299.18 2.67 0.03 0.06 -4.52
208453_s_at 208453_s_at NM_006523 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006523.1 /DEF=Homo sapiens X-prolyl aminopeptidase (aminopeptidase P)-like (XPNPEPL), mRNA. /FEA=CDS /GEN=XPNPEPL /PROD=X-prolyl aminopeptidase (aminopeptidase P)-like /DB_XREF=gi:5730117 /UG=Hs.284202 X-prolyl aminopeptidase (aminopeptidase P)-like /FL=gb:NM_006523.1 NM_006523 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble XPNPEP1 7511 NM_001167604 /// NM_020383 /// NR_030724 /// XM_005270144 /// XM_005270145 /// XM_006717962 /// XM_006717963 0006508 // proteolysis // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0010815 // bradykinin catabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070006 // metalloaminopeptidase activity // inferred from direct assay -52.95 226.22 -2.67 0.03 0.06 -4.52
209435_s_at 209435_s_at BC000265 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000265.1 /DEF=Homo sapiens, clone MGC:3182, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:3182) /DB_XREF=gi:12653008 /UG=Hs.315417 Homo sapiens, clone MGC:3182, mRNA, complete cds /FL=gb:BC000265.1 BC000265 Rho/Rac guanine nucleotide exchange factor (GEF) 2 ARHGEF2 9181 NM_001162383 /// NM_001162384 /// NM_004723 /// XM_005245587 /// XM_005245588 /// XM_005245589 /// XM_005245590 /// XM_005245591 /// XM_005245592 /// XM_005245593 /// XM_005245594 /// XM_005245595 /// XM_006711622 /// XM_006711623 /// XM_006711624 /// XM_006711625 /// XM_006711626 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0007015 // actin filament organization // inferred from mutant phenotype /// 0007026 // negative regulation of microtubule depolymerization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0032314 // regulation of Rac GTPase activity // inferred from direct assay /// 0032319 // regulation of Rho GTPase activity // inferred from direct assay /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0032760 // positive regulation of tumor necrosis factor production // inferred from direct assay /// 0032855 // positive regulation of Rac GTPase activity // inferred from direct assay /// 0035023 // regulation of Rho protein signal transduction // non-traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0060546 // negative regulation of necroptotic process // inferred from sequence or structural similarity /// 0060547 // negative regulation of necrotic cell death // inferred from sequence or structural similarity /// 0071225 // cellular response to muramyl dipeptide // inferred from direct assay /// 0071356 // cellular response to tumor necrosis factor // inferred from sequence or structural similarity /// 0071474 // cellular hyperosmotic response // inferred from sequence or structural similarity /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from sequence or structural similarity /// 1902219 // negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // non-traceable author statement /// 0017048 // Rho GTPase binding // inferred from direct assay /// 0030676 // Rac guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048365 // Rac GTPase binding // inferred from direct assay -101.10 314.65 -2.67 0.03 0.06 -4.52
200925_at 200925_at NM_004373 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004373.1 /DEF=Homo sapiens cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1), mRNA. /FEA=mRNA /GEN=COX6A1 /PROD=cytochrome c oxidase subunit VIa polypeptide 1 /DB_XREF=gi:10047079 /UG=Hs.180714 cytochrome c oxidase subunit VIa polypeptide 1 /FL=gb:NM_004373.1 NM_004373 cytochrome c oxidase subunit VIa polypeptide 1 COX6A1 1337 NM_004373 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005751 // mitochondrial respiratory chain complex IV // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation -129.35 1216.17 -2.67 0.03 0.06 -4.52
202395_at 202395_at NM_006178 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006178.1 /DEF=Homo sapiens N-ethylmaleimide-sensitive factor (NSF), mRNA. /FEA=mRNA /GEN=NSF /PROD=N-ethylmaleimide-sensitive factor /DB_XREF=gi:11079227 /UG=Hs.108802 N-ethylmaleimide-sensitive factor /FL=gb:AF102846.2 gb:NM_006178.1 gb:AF135168.1 NM_006178 uncharacterized LOC101930324 /// N-ethylmaleimide-sensitive factor LOC101930324 /// NSF 4905 /// 101930324 NM_006178 /// NR_040116 /// XM_006721929 /// XM_006725276 /// XM_006725626 /// XR_250612 0001921 // positive regulation of receptor recycling // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006887 // exocytosis // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045026 // plasma membrane fusion // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017075 // syntaxin-1 binding // inferred from sequence or structural similarity /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0042623 // ATPase activity, coupled // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 36.12 198.84 2.67 0.03 0.06 -4.52
211012_s_at 211012_s_at BC000080 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000080.1 /DEF=Homo sapiens, Similar to promyelocytic leukemia, clone MGC:2268, mRNA, complete cds. /FEA=mRNA /PROD=Similar to promyelocytic leukemia /DB_XREF=gi:12652662 /UG=Hs.89633 promyelocytic leukemia /FL=gb:BC000080.1 BC000080 promyelocytic leukemia PML 5371 NM_002675 /// NM_033238 /// NM_033239 /// NM_033240 /// NM_033244 /// NM_033246 /// NM_033247 /// NM_033249 /// NM_033250 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from direct assay /// 0001889 // liver development // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0002230 // positive regulation of defense response to virus by host // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0003417 // growth plate cartilage development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006605 // protein targeting // inferred from direct assay /// 0006605 // protein targeting // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from sequence or structural similarity /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein import into nucleus // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007569 // cell aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008584 // male gonad development // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from direct assay /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation /// 0009411 // response to UV // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010522 // regulation of calcium ion transport into cytosol // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from mutant phenotype /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030520 // intracellular estrogen receptor signaling pathway // inferred from direct assay /// 0030578 // PML body organization // inferred from direct assay /// 0030578 // PML body organization // inferred from mutant phenotype /// 0030850 // prostate gland development // inferred from electronic annotation /// 0030852 // regulation of granulocyte differentiation // inferred from electronic annotation /// 0030853 // negative regulation of granulocyte differentiation // inferred from direct assay /// 0031065 // positive regulation of histone deacetylation // inferred from direct assay /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0032211 // negative regulation of telomere maintenance via telomerase // inferred from mutant phenotype /// 0032355 // response to estradiol // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from sequence or structural similarity /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from mutant phenotype /// 0032689 // negative regulation of interferon-gamma production // inferred from direct assay /// 0032720 // negative regulation of tumor necrosis factor production // inferred from direct assay /// 0032736 // positive regulation of interleukin-13 production // inferred from direct assay /// 0032753 // positive regulation of interleukin-4 production // inferred from direct assay /// 0032754 // positive regulation of interleukin-5 production // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0032938 // negative regulation of translation in response to oxidative stress // inferred from direct assay /// 0033189 // response to vitamin A // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from direct assay /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from sequence or structural similarity /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // inferred from sequence or structural similarity /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043277 // apoptotic cell clearance // inferred from mutant phenotype /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0043551 // regulation of phosphatidylinositol 3-kinase activity // inferred from electronic annotation /// 0045087 // innate immune response // inferred from direct assay /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045343 // regulation of MHC class I biosynthetic process // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045630 // positive regulation of T-helper 2 cell differentiation // inferred from direct assay /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045947 // negative regulation of translational initiation // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay /// 0051099 // positive regulation of binding // inferred from mutant phenotype /// 0051457 // maintenance of protein location in nucleus // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0051974 // negative regulation of telomerase activity // inferred from mutant phenotype /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from electronic annotation /// 0060010 // Sertoli cell fate commitment // inferred from electronic annotation /// 0060058 // positive regulation of apoptotic process involved in mammary gland involution // inferred from direct assay /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060591 // chondroblast differentiation // inferred from electronic annotation /// 0061037 // negative regulation of cartilage development // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071300 // cellular response to retinoic acid // inferred from direct assay /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation /// 0071391 // cellular response to estrogen stimulus // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from electronic annotation /// 0090398 // cellular senescence // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from electronic annotation /// 1902187 // negative regulation of viral release from host cell // inferred from direct assay /// 2000059 // negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 2000779 // regulation of double-strand break repair // inferred from mutant phenotype /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from electronic annotation /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred by curator /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0016605 // PML body // traceable author statement /// 0030425 // dendrite // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0042406 // extrinsic component of endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000900 // translation repressor activity, nucleic acid binding // inferred from electronic annotation /// 0001972 // retinoic acid binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // inferred from direct assay /// 0003708 // retinoic acid receptor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008144 // drug binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032183 // SUMO binding // inferred from physical interaction /// 0035014 // phosphatidylinositol 3-kinase regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043422 // protein kinase B binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation /// 0044323 // retinoic acid-responsive element binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048027 // mRNA 5'-UTR binding // inferred from electronic annotation /// 0050897 // cobalt ion binding // inferred from direct assay /// 0051018 // protein kinase A binding // inferred from direct assay -31.93 71.91 -2.67 0.03 0.06 -4.52
212746_s_at 212746_s_at AA126789 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA126789 /FEA=EST /DB_XREF=gi:1686271 /DB_XREF=est:zn87e10.s1 /CLONE=IMAGE:565194 /UG=Hs.25132 KIAA0470 gene product AA126789 centrosomal protein 170kDa /// centrosomal protein 170kDa pseudogene 1 CEP170 /// CEP170P1 9859 /// 645455 NM_001042404 /// NM_001042405 /// NM_014812 /// NM_153243 /// NR_003135 /// XM_005273361 /// XM_006711843 /// XM_006711844 /// XM_006711845 /// XM_006711846 /// XM_006711847 /// XM_006711848 /// XM_006711849 /// XM_006711850 /// XM_006711851 /// XM_006711852 /// XM_006724974 /// XM_006724975 /// XM_006724976 /// XM_006724977 /// XM_006724978 /// XM_006724979 /// XM_006724980 /// XM_006724981 /// XM_006724982 /// XM_006724983 /// XM_006724984 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005814 // centriole // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 116.13 305.26 2.67 0.03 0.06 -4.52
202314_at 202314_at NM_000786 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000786.1 /DEF=Homo sapiens cytochrome P450, 51 (lanosterol 14-alpha-demethylase) (CYP51), mRNA. /FEA=mRNA /GEN=CYP51 /PROD=cytochrome P450, 51 (lanosterol14-alpha-demethylase) /DB_XREF=gi:4503242 /UG=Hs.226213 cytochrome P450, 51 (lanosterol 14-alpha-demethylase) /FL=gb:U23942.1 gb:NM_000786.1 gb:D55653.1 NM_000786 cytochrome P450, family 51, subfamily A, polypeptide 1 /// leucine-rich repeats and death domain containing 1 CYP51A1 /// LRRD1 1595 /// 401387 NM_000786 /// NM_001045475 /// NM_001146152 /// NM_001161528 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0016125 // sterol metabolic process // traceable author statement /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0033488 // cholesterol biosynthetic process via 24,25-dihydrolanosterol // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070988 // demethylation // inferred from direct assay /// 0070988 // demethylation // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008398 // sterol 14-demethylase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 31.50 65.62 2.66 0.03 0.06 -4.52
205284_at 205284_at NM_014777 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014777.1 /DEF=Homo sapiens KIAA0133 gene product (KIAA0133), mRNA. /FEA=mRNA /GEN=KIAA0133 /PROD=KIAA0133 gene product /DB_XREF=gi:7661931 /UG=Hs.57730 KIAA0133 gene product /FL=gb:D50923.1 gb:NM_014777.1 NM_014777 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) URB2 9816 NM_014777 /// XM_005273360 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016235 // aggresome // inferred from direct assay 31.65 44.45 2.66 0.03 0.06 -4.52
203162_s_at 203162_s_at NM_005886 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005886.1 /DEF=Homo sapiens katanin p80 (WD40-containing) subunit B 1 (KATNB1), mRNA. /FEA=mRNA /GEN=KATNB1 /PROD=katanin p80 subunit B 1 /DB_XREF=gi:5031816 /UG=Hs.275675 katanin p80 (WD40-containing) subunit B 1 /FL=gb:BC001353.1 gb:AF052432.1 gb:NM_005886.1 NM_005886 katanin p80 (WD repeat containing) subunit B 1 KATNB1 10300 NM_005886 /// XM_005255772 /// XM_006721121 /// XM_006721122 /// XM_006721123 0006200 // ATP catabolic process // inferred from direct assay /// 0006605 // protein targeting // non-traceable author statement /// 0007026 // negative regulation of microtubule depolymerization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007079 // mitotic chromosome movement towards spindle pole // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0031117 // positive regulation of microtubule depolymerization // inferred from mutant phenotype /// 0051013 // microtubule severing // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0008352 // katanin complex // inferred from direct assay /// 0008352 // katanin complex // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // non-traceable author statement /// 0008568 // microtubule-severing ATPase activity // inferred from direct assay /// 0045502 // dynein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction -35.35 123.08 -2.66 0.03 0.06 -4.52
200848_at 200848_at AA479488 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA479488 /FEA=EST /DB_XREF=gi:2208044 /DB_XREF=est:zv21c09.s1 /CLONE=IMAGE:754288 /UG=Hs.4113 S-adenosylhomocysteine hydrolase-like 1 /FL=gb:U82761.1 gb:NM_006621.1 AA479488 adenosylhomocysteinase-like 1 AHCYL1 10768 NM_001242673 /// NM_001242674 /// NM_001242675 /// NM_001242676 /// NM_006621 0006378 // mRNA polyadenylation // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0031440 // regulation of mRNA 3'-end processing // inferred from electronic annotation /// 0032412 // regulation of ion transmembrane transporter activity // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0004455 // ketol-acid reductoisomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 69.45 225.65 2.66 0.03 0.06 -4.52
200849_s_at 200849_s_at AI589266 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI589266 /FEA=EST /DB_XREF=gi:4598314 /DB_XREF=est:tr58c06.x2 /CLONE=IMAGE:2222506 /UG=Hs.4113 S-adenosylhomocysteine hydrolase-like 1 /FL=gb:U82761.1 gb:NM_006621.1 AI589266 adenosylhomocysteinase-like 1 AHCYL1 10768 NM_001242673 /// NM_001242674 /// NM_001242675 /// NM_001242676 /// NM_006621 0006378 // mRNA polyadenylation // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0031440 // regulation of mRNA 3'-end processing // inferred from electronic annotation /// 0032412 // regulation of ion transmembrane transporter activity // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0004455 // ketol-acid reductoisomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 67.75 240.62 2.66 0.03 0.06 -4.52
202244_at 202244_at NM_002796 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002796.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, beta type, 4 (PSMB4), mRNA. /FEA=mRNA /GEN=PSMB4 /PROD=proteasome (prosome, macropain) subunit, betatype, 4 /DB_XREF=gi:4506198 /UG=Hs.89545 proteasome (prosome, macropain) subunit, beta type, 4 /FL=gb:BC000331.1 gb:NM_002796.1 gb:D26600.1 NM_002796 proteasome (prosome, macropain) subunit, beta type, 4 PSMB4 5692 NM_002796 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 132.07 801.66 2.66 0.03 0.06 -4.52
212604_at 212604_at AI937794 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI937794 /FEA=EST /DB_XREF=gi:5676664 /DB_XREF=est:wp82g10.x1 /CLONE=IMAGE:2468322 /UG=Hs.154655 imogen 38 /FL=gb:NM_005830.1 AI937794 mitochondrial ribosomal protein S31 MRPS31 10240 NM_005830 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005763 // mitochondrial small ribosomal subunit // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 40.92 119.04 2.66 0.03 0.06 -4.52
201486_at 201486_at NM_002902 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002902.1 /DEF=Homo sapiens reticulocalbin 2, EF-hand calcium binding domain (RCN2), mRNA. /FEA=mRNA /GEN=RCN2 /PROD=reticulocalbin 2, EF-hand calcium bindingdomain /DB_XREF=gi:4506456 /UG=Hs.79088 reticulocalbin 2, EF-hand calcium binding domain /FL=gb:BC004892.1 gb:NM_002902.1 NM_002902 reticulocalbin 2, EF-hand calcium binding domain RCN2 5955 NM_001271837 /// NM_002902 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 95.68 307.89 2.66 0.03 0.06 -4.52
218247_s_at 218247_s_at NM_016626 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016626.1 /DEF=Homo sapiens hypothetical protein (LOC51320), mRNA. /FEA=mRNA /GEN=LOC51320 /PROD=hypothetical protein /DB_XREF=gi:7706165 /UG=Hs.12830 hypothetical protein /FL=gb:AF208855.1 gb:NM_016626.1 NM_016626 mex-3 RNA binding family member C MEX3C 51320 NM_016626 0003415 // chondrocyte hypertrophy // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0045598 // regulation of fat cell differentiation // inferred from electronic annotation /// 0097009 // energy homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -45.48 196.16 -2.65 0.03 0.06 -4.52
50277_at 50277_at AW001443 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AW001443:wu31e12.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-990785 /clone_end=3' /gb=AW001443 /gi=5848359 /ug=Hs.239110 /len=490 AW001443 golgi-associated, gamma adaptin ear containing, ARF binding protein 1 GGA1 26088 NM_001001560 /// NM_001001561 /// NM_001172687 /// NM_001172688 /// NM_013365 /// XM_005261517 /// XM_005261518 /// XM_005261520 /// XM_005261522 /// XM_006724228 /// XM_006724229 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 38.50 359.35 2.65 0.03 0.06 -4.52
218126_at 218126_at NM_018145 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018145.1 /DEF=Homo sapiens hypothetical protein FLJ10579 (FLJ10579), mRNA. /FEA=mRNA /GEN=FLJ10579 /PROD=hypothetical protein FLJ10579 /DB_XREF=gi:8922531 /UG=Hs.8055 hypothetical protein FLJ10579 /FL=gb:NM_018145.1 NM_018145 regulator of microtubule dynamics 3 RMDN3 55177 NM_018145 /// XM_005254531 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 50.17 152.84 2.65 0.03 0.06 -4.52
212410_at 212410_at AI346431 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI346431 /FEA=EST /DB_XREF=gi:4083637 /DB_XREF=est:qp50g09.x1 /CLONE=IMAGE:1926496 /UG=Hs.75188 wee1+ (S. pombe) homolog AI346431 mitochondrial calcium uptake 2 MICU2 221154 NM_152726 /// XR_429214 0006851 // mitochondrial calcium ion transport // inferred from direct assay /// 0051561 // positive regulation of mitochondrial calcium ion concentration // inferred from electronic annotation /// 0051562 // negative regulation of mitochondrial calcium ion concentration // inferred from direct assay 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0034704 // calcium channel complex // inferred from sequence or structural similarity /// 1990246 // uniplex complex // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction 59.85 198.10 2.65 0.03 0.06 -4.52
200927_s_at 200927_s_at AA919115 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA919115 /FEA=EST /DB_XREF=gi:3059005 /DB_XREF=est:ol85g11.s1 /CLONE=IMAGE:1536452 /UG=Hs.5807 GTPase Rab14 /FL=gb:AF152463.1 gb:AF203689.1 gb:AL162081.1 gb:NM_016322.1 AA919115 RAB14, member RAS oncogene family RAB14 51552 NM_016322 0006184 // GTP catabolic process // not recorded /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // inferred from sequence or structural similarity /// 0006895 // Golgi to endosome transport // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0032456 // endocytic recycling // inferred from direct assay /// 0032880 // regulation of protein localization // inferred from direct assay /// 0046907 // intracellular transport // non-traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005791 // rough endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042175 // nuclear outer membrane-endoplasmic reticulum membrane network // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0055037 // recycling endosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay 41.05 242.25 2.65 0.03 0.06 -4.52
218768_at 218768_at NM_020401 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020401.1 /DEF=Homo sapiens nuclear pore complex protein (NUP107), mRNA. /FEA=mRNA /GEN=NUP107 /PROD=nuclear pore complex protein /DB_XREF=gi:9966880 /UG=Hs.236204 nuclear pore complex protein /FL=gb:NM_020401.1 NM_020401 nucleoporin 107kDa NUP107 57122 NM_020401 /// XM_005269037 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051292 // nuclear pore complex assembly // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031080 // nuclear pore outer ring // inferred from direct assay /// 0031080 // nuclear pore outer ring // non-traceable author statement /// 0031965 // nuclear membrane // inferred from direct assay /// 0034399 // nuclear periphery // inferred from direct assay 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017056 // structural constituent of nuclear pore // inferred from mutant phenotype 44.15 180.55 2.65 0.03 0.06 -4.52
202598_at 202598_at NM_005979 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005979.1 /DEF=Homo sapiens S100 calcium-binding protein A13 (S100A13), mRNA. /FEA=mRNA /GEN=S100A13 /PROD=S100 calcium-binding protein A13 /DB_XREF=gi:5174658 /UG=Hs.14331 S100 calcium-binding protein A13 /FL=gb:BC000632.1 gb:NM_005979.1 NM_005979 S100 calcium binding protein A13 S100A13 6284 NM_001024210 /// NM_001024211 /// NM_001024212 /// NM_001024213 /// NM_005979 /// XM_005245434 0006810 // transport // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043303 // mast cell degranulation // non-traceable author statement /// 0046688 // response to copper ion // inferred from electronic annotation /// 0050663 // cytokine secretion // inferred from mutant phenotype /// 0050703 // interleukin-1 alpha secretion // inferred from direct assay /// 0051602 // response to electrical stimulus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0042629 // mast cell granule // non-traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005507 // copper ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050786 // RAGE receptor binding // inferred from physical interaction 58.27 402.76 2.64 0.03 0.06 -4.52
219559_at 219559_at NM_022082 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022082.1 /DEF=Homo sapiens hypothetical protein FLJ23412 (FLJ23412), mRNA. /FEA=mRNA /GEN=FLJ23412 /PROD=hypothetical protein FLJ23412 /DB_XREF=gi:11545794 /UG=Hs.34487 hypothetical protein FLJ23412 /FL=gb:NM_022082.1 NM_022082 solute carrier family 17 (vesicular nucleotide transporter), member 9 SLC17A9 63910 NM_022082 /// XM_005260228 /// XM_006723853 /// XR_430309 /// XR_430310 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 44.40 136.12 2.64 0.03 0.06 -4.52
211275_s_at 211275_s_at AF087942 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF087942.1 /DEF=Homo sapiens glycogenin-1L mRNA, complete cds. /FEA=mRNA /PROD=glycogenin-1L /DB_XREF=gi:5814084 /UG=Hs.174071 glycogenin /FL=gb:AF087942.1 AF087942 glycogenin 1 GYG1 2992 NM_001184720 /// NM_001184721 /// NM_004130 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005536 // glucose binding // inferred from electronic annotation /// 0008466 // glycogenin glucosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 40.45 352.60 2.64 0.03 0.06 -4.52
202010_s_at 202010_s_at NM_021188 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021188.1 /DEF=Homo sapiens clones 23667 and 23775 zinc finger protein (LOC57862), mRNA. /FEA=mRNA /GEN=LOC57862 /PROD=clones 23667 and 23775 zinc finger protein /DB_XREF=gi:10863994 /UG=Hs.7137 clones 23667 and 23775 zinc finger protein /FL=gb:NM_021188.1 gb:U90919.1 NM_021188 prostaglandin reductase 2 /// zinc finger protein 410 PTGR2 /// ZNF410 57862 /// 145482 NM_001146154 /// NM_001146155 /// NM_001242924 /// NM_001242926 /// NM_001242927 /// NM_001242928 /// NM_021188 /// NM_152444 /// NR_040251 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0036132 // 13-prostaglandin reductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047522 // 15-oxoprostaglandin 13-oxidase activity // inferred from direct assay -51.63 204.09 -2.64 0.03 0.06 -4.52
202428_x_at 202428_x_at NM_020548 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020548.1 /DEF=Homo sapiens diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) (DBI), mRNA. /FEA=mRNA /GEN=DBI /PROD=diazepam binding inhibitor /DB_XREF=gi:10140852 /UG=Hs.78888 diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) /FL=gb:NM_020548.1 gb:M14200.1 NM_020548 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) DBI 1622 NM_001079862 /// NM_001079863 /// NM_001178017 /// NM_001178041 /// NM_001178042 /// NM_001178043 /// NM_001282633 /// NM_001282634 /// NM_001282635 /// NM_001282636 /// NM_020548 /// NR_104221 0001942 // hair follicle development // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0018345 // protein palmitoylation // inferred from direct assay /// 0036151 // phosphatidylcholine acyl-chain remodeling // inferred from direct assay /// 0043588 // skin development // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097038 // perinuclear endoplasmic reticulum // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0030156 // benzodiazepine receptor binding // traceable author statement /// 0036042 // long-chain fatty acyl-CoA binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from direct assay 192.50 916.50 2.64 0.03 0.06 -4.52
208922_s_at 208922_s_at BC004904 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004904.1 /DEF=Homo sapiens, nuclear RNA export factor 1, clone MGC:4612, mRNA, complete cds. /FEA=mRNA /PROD=nuclear RNA export factor 1 /DB_XREF=gi:13436184 /UG=Hs.323502 nuclear RNA export factor 1 /FL=gb:BC004904.1 gb:U80073.1 gb:AF126246.1 gb:AF112880.1 gb:NM_006362.1 BC004904 nuclear RNA export factor 1 NXF1 10482 NM_001081491 /// NM_006362 /// XM_006718418 /// XM_006718419 /// XM_006718420 0006405 // RNA export from nucleus // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0000346 // transcription export complex // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005487 // nucleocytoplasmic transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -43.75 215.85 -2.64 0.03 0.06 -4.52
212832_s_at 212832_s_at AI143124 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI143124 /FEA=EST /DB_XREF=gi:3664933 /DB_XREF=est:qb76c12.x1 /CLONE=IMAGE:1706038 /UG=Hs.76989 KIAA0097 gene product AI143124 cytoskeleton associated protein 5 CKAP5 9793 NM_001008938 /// NM_014756 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007051 // spindle organization // inferred from mutant phenotype /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0030951 // establishment or maintenance of microtubule cytoskeleton polarity // inferred from mutant phenotype /// 0050658 // RNA transport // inferred from sequence or structural similarity /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from direct assay /// 0000930 // gamma-tubulin complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0035371 // microtubule plus-end // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004519 // endonuclease activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 54.90 249.85 2.64 0.03 0.06 -4.52
212893_at 212893_at AL080063 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080063.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564I052 (from clone DKFZp564I052). /FEA=mRNA /GEN=DKFZp564I052 /PROD=hypothetical protein /DB_XREF=gi:5262468 /UG=Hs.5364 DKFZP564I052 protein AL080063 zinc finger, ZZ-type containing 3 ZZZ3 26009 NM_015534 /// XM_005270725 /// XM_005270726 /// XM_005270727 /// XM_005270728 /// XM_005270729 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -34.35 218.35 -2.64 0.03 0.06 -4.52
201628_s_at 201628_s_at NM_006570 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006570.1 /DEF=Homo sapiens Ras-related GTP-binding protein (RAGA), mRNA. /FEA=mRNA /GEN=RAGA /PROD=Ras-related GTP-binding protein /DB_XREF=gi:5729998 /UG=Hs.57304 Ras-related GTP-binding protein /FL=gb:U41654.1 gb:NM_006570.1 NM_006570 Ras-related GTP binding A RRAGA 10670 NM_006570 0006915 // apoptotic process // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008219 // cell death // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from direct assay /// 0032008 // positive regulation of TOR signaling // non-traceable author statement /// 0034613 // cellular protein localization // inferred from mutant phenotype /// 0045919 // positive regulation of cytolysis // inferred from direct assay /// 0071230 // cellular response to amino acid stimulus // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from direct assay 71.83 533.94 2.64 0.03 0.06 -4.52
201564_s_at 201564_s_at NM_003088 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003088.1 /DEF=Homo sapiens singed (Drosophila)-like (sea urchin fascin homolog like) (SNL), mRNA. /FEA=mRNA /GEN=SNL /PROD=singed (Drosophila)-like (sea urchin fascinhomolog like) /DB_XREF=gi:4507114 /UG=Hs.118400 singed (Drosophila)-like (sea urchin fascin homolog like) /FL=gb:BC000521.1 gb:NM_003088.1 gb:U03057.1 gb:U09873.1 NM_003088 fascin actin-bundling protein 1 FSCN1 6624 NM_003088 0008283 // cell proliferation // traceable author statement /// 0016477 // cell migration // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0048870 // cell motility // inferred from direct assay /// 0051017 // actin filament bundle assembly // inferred from direct assay 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071437 // invadopodium // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from direct assay /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from direct assay 72.87 297.99 2.64 0.03 0.06 -4.52
211070_x_at 211070_x_at BC006466 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006466.1 /DEF=Homo sapiens, clone MGC:2310, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:2310) /DB_XREF=gi:13623678 /FL=gb:BC006466.1 BC006466 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) DBI 1622 NM_001079862 /// NM_001079863 /// NM_001178017 /// NM_001178041 /// NM_001178042 /// NM_001178043 /// NM_001282633 /// NM_001282634 /// NM_001282635 /// NM_001282636 /// NM_020548 /// NR_104221 0001942 // hair follicle development // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0018345 // protein palmitoylation // inferred from direct assay /// 0036151 // phosphatidylcholine acyl-chain remodeling // inferred from direct assay /// 0043588 // skin development // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097038 // perinuclear endoplasmic reticulum // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0030156 // benzodiazepine receptor binding // traceable author statement /// 0036042 // long-chain fatty acyl-CoA binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from direct assay 160.70 688.45 2.64 0.03 0.06 -4.52
211927_x_at 211927_x_at BE963164 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE963164 /FEA=EST /DB_XREF=gi:11766582 /DB_XREF=est:601656973R1 /CLONE=IMAGE:3865650 /UG=Hs.2186 eukaryotic translation elongation factor 1 gamma BE963164 eukaryotic translation elongation factor 1 gamma /// microRNA 3654 EEF1G /// MIR3654 1937 /// 100500804 NM_001404 /// NR_037427 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -638.35 3657.95 -2.64 0.03 0.06 -4.52
217122_s_at 217122_s_at AL031282 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031282 /DEF=Human DNA sequence from clone 283E3 on chromosome 1p36.21-36.33. Contains the alternatively spliced gene for Matrix Metalloproteinase in the Female Reproductive tract MIFR1, -2, MMP2122A, -B and -C, a novel gene, the alternatively spliced CDC2L2 ... /FEA=mRNA_6 /DB_XREF=gi:3860395 /UG=Hs.214646 KIAA0447 gene product AL031282 solute carrier family 35, member E2 /// solute carrier family 35, member E2B SLC35E2 /// SLC35E2B 9906 /// 728661 NM_001110781 /// NM_001199787 /// NM_001290264 /// NM_182838 /// XM_006710870 /// XM_006710871 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 58.20 291.82 2.63 0.03 0.06 -4.52
201589_at 201589_at D80000 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D80000.1 /DEF=Human mRNA for KIAA0178 gene, partial cds. /FEA=mRNA /GEN=KIAA0178 /DB_XREF=gi:1136415 /UG=Hs.211602 SMC1 (structural maintenance of chromosomes 1, yeast)-like 1 /FL=gb:NM_006306.1 D80000 structural maintenance of chromosomes 1A SMC1A 8243 NM_001281463 /// NM_006306 0000070 // mitotic sister chromatid segregation // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // traceable author statement /// 0007062 // sister chromatid cohesion // inferred from mutant phenotype /// 0007064 // mitotic sister chromatid cohesion // traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007093 // mitotic cell cycle checkpoint // inferred from direct assay /// 0007126 // meiotic nuclear division // inferred from sequence or structural similarity /// 0008380 // RNA splicing // traceable author statement /// 0009314 // response to radiation // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0032876 // negative regulation of DNA endoreduplication // inferred from mutant phenotype /// 0042770 // signal transduction in response to DNA damage // inferred from direct assay /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // traceable author statement /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008278 // cohesin complex // inferred from electronic annotation /// 0008280 // cohesin core heterodimer // traceable author statement /// 0030893 // meiotic cohesin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0036033 // mediator complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 73.97 266.06 2.63 0.03 0.06 -4.52
201543_s_at 201543_s_at NM_020150 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020150.1 /DEF=Homo sapiens SAR1 protein (SAR1), mRNA. /FEA=mRNA /GEN=SAR1 /PROD=SAR1 protein /DB_XREF=gi:9910541 /UG=Hs.110796 SAR1 protein /FL=gb:AY008268.1 gb:AL136724.1 gb:AF261717.1 gb:NM_020150.1 NM_020150 secretion associated, Ras related GTPase 1A SAR1A 56681 NM_001142648 /// NM_020150 0006184 // GTP catabolic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // non-traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation -37.65 230.60 -2.63 0.03 0.06 -4.52
201944_at 201944_at NM_000521 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000521.2 /DEF=Homo sapiens hexosaminidase B (beta polypeptide) (HEXB), mRNA. /FEA=mRNA /GEN=HEXB /PROD=hexosaminidase B preproprotein /DB_XREF=gi:13128866 /UG=Hs.51043 hexosaminidase B (beta polypeptide) /FL=gb:NM_000521.2 gb:M19735.1 NM_000521 hexosaminidase B (beta polypeptide) HEXB 3074 NM_000521 /// NM_001292004 0001501 // skeletal system development // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0006689 // ganglioside catabolic process // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007338 // single fertilization // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008049 // male courtship behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009313 // oligosaccharide catabolic process // inferred from electronic annotation /// 0019915 // lipid storage // inferred from electronic annotation /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030207 // chondroitin sulfate catabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0031323 // regulation of cellular metabolic process // inferred from electronic annotation /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0042340 // keratan sulfate catabolic process // traceable author statement /// 0042552 // myelination // inferred from electronic annotation /// 0043615 // astrocyte cell migration // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048477 // oogenesis // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050905 // neuromuscular process // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004563 // beta-N-acetylhexosaminidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay -42.30 471.55 -2.63 0.03 0.06 -4.52
218203_at 218203_at NM_013338 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013338.2 /DEF=Homo sapiens Alg5, S. cerevisiae, homolog of (ALG5), mRNA. /FEA=mRNA /GEN=ALG5 /PROD=dolichyl phosphate glucosyltransferase /DB_XREF=gi:9665250 /UG=Hs.227933 Alg5, S. cerevisiae, homolog of /FL=gb:AF102850.1 gb:AF161498.1 gb:NM_013338.2 gb:AF183413.1 NM_013338 ALG5, dolichyl-phosphate beta-glucosyltransferase ALG5 29880 NM_001142364 /// NM_013338 /// XM_005266362 0006486 // protein glycosylation // traceable author statement /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004576 // oligosaccharyl transferase activity // traceable author statement /// 0004581 // dolichyl-phosphate beta-glucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 67.35 297.75 2.63 0.03 0.06 -4.52
214870_x_at 214870_x_at AC002045 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC002045 /DEF=Human Chromosome 16 BAC clone CIT987SK-A-589H1 /FEA=mRNA_2 /DB_XREF=gi:2951945 /UG=Hs.251928 nuclear pore complex interacting protein AC002045 polycystin-1-like /// nuclear pore complex-interacting protein family member A1-like /// nuclear pore complex interacting protein family, member A1 /// nuclear pore complex interacting protein family, member A2 /// nuclear pore complex interacting protein family, member A3 /// nuclear pore complex interacting protein family, member A5 /// nuclear pore complex interacting protein family, member A7 /// nuclear pore complex interacting protein family, member A8 /// polycystic kidney disease 1 (autosomal dominant) pseudogene 1 LOC101930075 /// LOC102724993 /// NPIPA1 /// NPIPA2 /// NPIPA3 /// NPIPA5 /// NPIPA7 /// NPIPA8 /// PKD1P1 9284 /// 339044 /// 642778 /// 642799 /// 100288332 /// 101059938 /// 101059953 /// 101930075 /// 102724993 NM_001277323 /// NM_001277324 /// NM_001277325 /// NM_001282507 /// NM_001282511 /// NM_006985 /// NR_036447 /// XM_005255019 /// XM_005255020 /// XM_005255021 /// XM_005255024 /// XM_005255484 /// XM_005255485 /// XM_005255486 /// XM_005255487 /// XM_005255488 /// XM_005255489 /// XM_005255490 /// XM_005255491 /// XM_005255492 /// XM_005255694 /// XM_005255695 /// XM_005255735 /// XM_005255737 /// XM_005255738 /// XM_005276493 /// XM_006720823 /// XM_006720824 /// XM_006720825 /// XM_006720826 /// XM_006720827 /// XM_006720828 /// XM_006720829 /// XM_006720830 /// XM_006720916 /// XM_006720917 /// XM_006720979 /// XM_006720980 /// XM_006725185 /// XM_006725186 /// XM_006725187 /// XM_006725188 /// XM_006725189 /// XM_006725190 /// XM_006725191 /// XM_006725205 /// XM_006725206 /// XM_006725207 /// XM_006725208 /// XM_006725209 /// XM_006725210 /// XM_006725211 /// XM_006725212 /// XM_006725213 /// XM_006725232 /// XM_006725233 /// XM_006725234 /// XM_006725235 /// XM_006726604 /// XM_006726605 /// XM_006726606 /// XM_006726607 0006810 // transport // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation -97.82 373.31 -2.63 0.03 0.06 -4.52
201890_at 201890_at BE966236 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE966236 /FEA=EST /DB_XREF=gi:11771437 /DB_XREF=est:601660172R1 /CLONE=IMAGE:3905920 /UG=Hs.75319 ribonucleotide reductase M2 polypeptide /FL=gb:NM_001034.1 BE966236 ribonucleotide reductase M2 RRM2 6241 NM_001034 /// NM_001165931 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 0009186 // deoxyribonucleoside diphosphate metabolic process // inferred from electronic annotation /// 0009262 // deoxyribonucleotide metabolic process // inferred from electronic annotation /// 0009263 // deoxyribonucleotide biosynthetic process // inferred from sequence or structural similarity /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0004748 // ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor // inferred from sequence or structural similarity /// 0004748 // ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 84.20 252.50 2.63 0.03 0.06 -4.52
43511_s_at 43511_s_at AI201594 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI201594:qc02h12.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-1708487 /clone_end=3' /gb=AI201594 /gi=3754200 /ug=Hs.239333 /len=591 AI201594 arrestin, beta 1 ARRB1 408 NM_004041 /// NM_020251 /// XM_005273997 /// XM_005273998 /// XM_006718552 /// XM_006718553 /// XM_006718554 /// XM_006718555 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0002031 // G-protein coupled receptor internalization // inferred from mutant phenotype /// 0002092 // positive regulation of receptor internalization // inferred from mutant phenotype /// 0006309 // apoptotic DNA fragmentation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007602 // phototransduction // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0030168 // platelet activation // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // inferred from direct assay /// 0032717 // negative regulation of interleukin-8 production // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0034260 // negative regulation of GTPase activity // inferred from electronic annotation /// 0034393 // positive regulation of smooth muscle cell apoptotic process // inferred from electronic annotation /// 0035025 // positive regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035066 // positive regulation of histone acetylation // inferred from mutant phenotype /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0042699 // follicle-stimulating hormone signaling pathway // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043149 // stress fiber assembly // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0043547 // positive regulation of GTPase activity // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0090240 // positive regulation of histone H4 acetylation // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005765 // lysosomal membrane // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031143 // pseudopodium // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004857 // enzyme inhibitor activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from mutant phenotype /// 0005159 // insulin-like growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031691 // alpha-1A adrenergic receptor binding // inferred from electronic annotation /// 0031692 // alpha-1B adrenergic receptor binding // inferred from electronic annotation /// 0031701 // angiotensin receptor binding // inferred from physical interaction /// 0031762 // follicle-stimulating hormone receptor binding // inferred from electronic annotation /// 0031896 // V2 vasopressin receptor binding // inferred from electronic annotation /// 0035612 // AP-2 adaptor complex binding // inferred from electronic annotation /// 0035615 // clathrin adaptor activity // inferred from electronic annotation /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from mutant phenotype /// 0044325 // ion channel binding // inferred from electronic annotation /// 0045309 // protein phosphorylated amino acid binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from electronic annotation -86.70 253.75 -2.63 0.03 0.06 -4.52
218930_s_at 218930_s_at NM_018374 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018374.1 /DEF=Homo sapiens hypothetical protein FLJ11273 (FLJ11273), mRNA. /FEA=mRNA /GEN=FLJ11273 /PROD=hypothetical protein FLJ11273 /DB_XREF=gi:8922965 /UG=Hs.3542 hypothetical protein FLJ11273 /FL=gb:NM_018374.1 NM_018374 transmembrane protein 106B TMEM106B 54664 NM_001134232 /// NM_018374 /// XM_005249789 /// XM_006715749 0006810 // transport // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0032418 // lysosome localization // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // inferred from mutant phenotype 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 35.52 87.49 2.62 0.03 0.06 -4.52
207574_s_at 207574_s_at NM_015675 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015675.1 /DEF=Homo sapiens growth arrest and DNA-damage-inducible, beta (GADD45B), mRNA. /FEA=mRNA /GEN=GADD45B /PROD=DKFZP566B133 protein /DB_XREF=gi:9945331 /UG=Hs.110571 growth arrest and DNA-damage-inducible, beta /FL=gb:AF090950.1 gb:NM_015675.1 NM_015675 growth arrest and DNA-damage-inducible, beta GADD45B 4616 NM_015675 0000185 // activation of MAPKKK activity // inferred from direct assay /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 1900745 // positive regulation of p38MAPK cascade // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 50.58 146.51 2.62 0.03 0.06 -4.52
207332_s_at 207332_s_at NM_003234 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003234.1 /DEF=Homo sapiens transferrin receptor (p90, CD71) (TFRC), mRNA. /FEA=mRNA /GEN=TFRC /PROD=transferrin receptor (p90, CD71) /DB_XREF=gi:4507456 /UG=Hs.77356 transferrin receptor (p90, CD71) /FL=gb:NM_003234.1 NM_003234 transferrin receptor TFRC 7037 NM_001128148 /// NM_003234 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // non-traceable author statement /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // non-traceable author statement /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0033572 // transferrin transport // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0045780 // positive regulation of bone resorption // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0097286 // iron ion import // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0003725 // double-stranded RNA binding // inferred from direct assay /// 0004998 // transferrin receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -144.95 827.05 -2.62 0.03 0.06 -4.52
212933_x_at 212933_x_at AA961748 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA961748 /FEA=EST /DB_XREF=gi:3133912 /DB_XREF=est:or60d03.s1 /CLONE=IMAGE:1600229 /UG=Hs.180842 ribosomal protein L13 AA961748 ribosomal protein L13 /// small nucleolar RNA, C/D box 68 RPL13 /// SNORD68 6137 /// 606500 NM_000977 /// NM_001243130 /// NM_001243131 /// NM_033251 /// NR_002450 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022626 // cytosolic ribosome // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -260.75 1890.12 -2.62 0.03 0.06 -4.52
218102_at 218102_at NM_015954 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015954.1 /DEF=Homo sapiens CGI-26 protein (LOC51071), mRNA. /FEA=mRNA /GEN=LOC51071 /PROD=CGI-26 protein /DB_XREF=gi:7705717 /UG=Hs.24332 CGI-26 protein /FL=gb:AF132960.1 gb:NM_015954.1 NM_015954 deoxyribose-phosphate aldolase (putative) DERA 51071 NM_015954 /// XM_006719083 0009264 // deoxyribonucleotide catabolic process // inferred from electronic annotation /// 0046121 // deoxyribonucleoside catabolic process // inferred from direct assay /// 0046386 // deoxyribose phosphate catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004139 // deoxyribose-phosphate aldolase activity // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation 36.58 193.01 2.62 0.03 0.06 -4.52
203332_s_at 203332_s_at NM_005541 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005541.1 /DEF=Homo sapiens inositol polyphosphate-5-phosphatase, 145kD (INPP5D), mRNA. /FEA=mRNA /GEN=INPP5D /PROD=inositol polyphosphate-5-phosphatase, 145kD /DB_XREF=gi:5031798 /UG=Hs.155939 inositol polyphosphate-5-phosphatase, 145kD /FL=gb:U50040.1 gb:U57650.1 gb:U84400.1 gb:U53470.1 gb:NM_005541.1 NM_005541 inositol polyphosphate-5-phosphatase, 145kDa INPP5D 3635 NM_001017915 /// NM_005541 0002376 // immune system process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006796 // phosphate-containing compound metabolic process // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030853 // negative regulation of granulocyte differentiation // inferred from electronic annotation /// 0030889 // negative regulation of B cell proliferation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045409 // negative regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045579 // positive regulation of B cell differentiation // inferred from electronic annotation /// 0045621 // positive regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045656 // negative regulation of monocyte differentiation // inferred from electronic annotation /// 0045659 // negative regulation of neutrophil differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0046856 // phosphatidylinositol dephosphorylation // inferred from electronic annotation /// 0050777 // negative regulation of immune response // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050869 // negative regulation of B cell activation // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0004445 // inositol-polyphosphate 5-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0034594 // phosphatidylinositol trisphosphate phosphatase activity // inferred from electronic annotation /// 0051425 // PTB domain binding // inferred from electronic annotation 51.42 163.89 2.62 0.03 0.06 -4.52
200595_s_at 200595_s_at NM_003750 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003750.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 10 (theta, 150170kD) (EIF3S10), mRNA. /FEA=mRNA /GEN=EIF3S10 /PROD=eukaryotic translation initiation factor 3,subunit 10 (theta, 150170kD) /DB_XREF=gi:4503508 /UG=Hs.198899 eukaryotic translation initiation factor 3, subunit 10 (theta, 150170kD) /FL=gb:D50929.1 gb:U58046.1 gb:U78311.1 gb:NM_003750.1 NM_003750 eukaryotic translation initiation factor 3, subunit A EIF3A 8661 NM_003750 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0001732 // formation of translation initiation complex // inferred from direct assay /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005198 // structural molecule activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -117.53 635.96 -2.62 0.03 0.06 -4.52
210024_s_at 210024_s_at AB017644 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB017644.1 /DEF=Homo sapiens mRNA for ubiquitin-conjugating enzyme E2, complete cds. /FEA=mRNA /GEN=UbcH9 /PROD=ubiquitin-conjugating enzyme E2 /DB_XREF=gi:4586929 /UG=Hs.4890 ubiquitin-conjugating enzyme E2E 3 (homologous to yeast UBC45) /FL=gb:BC003554.1 gb:AB017644.1 gb:AF085362.1 gb:NM_006357.1 AB017644 ubiquitin-conjugating enzyme E2E 3 UBE2E3 10477 NM_001278554 /// NM_001278555 /// NM_006357 /// NM_182678 /// XM_005246244 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 78.68 388.16 2.61 0.03 0.06 -4.52
208767_s_at 208767_s_at AW149681 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW149681 /FEA=EST /DB_XREF=gi:6197577 /DB_XREF=est:xf41a10.x1 /CLONE=IMAGE:2620602 /UG=Hs.296398 Homo sapiens mRNA; cDNA DKFZp586E1124 (from clone DKFZp586E1124); complete cds /FL=gb:AL136942.1 AW149681 lysosomal protein transmembrane 4 beta LAPTM4B 55353 NM_018407 0006810 // transport // inferred from electronic annotation 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 129.10 540.98 2.61 0.03 0.06 -4.52
200776_s_at 200776_s_at AL518328 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL518328 /FEA=EST /DB_XREF=gi:12781821 /DB_XREF=est:AL518328 /CLONE=CS0DA009YK18 (3 prime) /UG=Hs.155291 KIAA0005 gene product /FL=gb:D13630.1 gb:NM_014670.1 AL518328 basic leucine zipper and W2 domains 1 BZW1 9689 NM_001207067 /// NM_001207068 /// NM_001207069 /// NM_014670 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -192.35 618.65 -2.61 0.03 0.06 -4.52
202446_s_at 202446_s_at AI825926 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI825926 /FEA=EST /DB_XREF=gi:5446597 /DB_XREF=est:to92d05.x1 /CLONE=IMAGE:2185737 /UG=Hs.198282 phospholipid scramblase 1 /FL=gb:NM_021105.1 gb:AB006746.1 gb:AF098642.1 AI825926 phospholipid scramblase 1 PLSCR1 5359 NM_021105 /// XM_005247538 0006659 // phosphatidylserine biosynthetic process // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from direct assay /// 0006953 // acute-phase response // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0017121 // phospholipid scrambling // inferred from direct assay /// 0030168 // platelet activation // non-traceable author statement /// 0033003 // regulation of mast cell activation // inferred from sequence or structural similarity /// 0035456 // response to interferon-beta // inferred from mutant phenotype /// 0045071 // negative regulation of viral genome replication // inferred from mutant phenotype /// 0045089 // positive regulation of innate immune response // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051607 // defense response to virus // inferred from mutant phenotype /// 0060368 // regulation of Fc receptor mediated stimulatory signaling pathway // inferred from sequence or structural similarity /// 2000373 // positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from direct assay /// 0017128 // phospholipid scramblase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0042609 // CD4 receptor binding // inferred from physical interaction -74.53 264.91 -2.61 0.03 0.06 -4.52
201161_s_at 201161_s_at NM_003651 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003651.1 /DEF=Homo sapiens cold shock domain protein A (CSDA), mRNA. /FEA=mRNA /GEN=CSDA /PROD=cold shock domain protein A /DB_XREF=gi:4503070 /UG=Hs.1139 cold shock domain protein A /FL=gb:NM_003651.1 NM_003651 Y box binding protein 3 YBX3 8531 NM_001145426 /// NM_003651 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009409 // response to cold // traceable author statement /// 0009566 // fertilization // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0048642 // negative regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0060546 // negative regulation of necroptotic process // inferred from mutant phenotype /// 0060547 // negative regulation of necrotic cell death // inferred from mutant phenotype /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred by curator /// 0071356 // cellular response to tumor necrosis factor // inferred from mutant phenotype /// 0071474 // cellular hyperosmotic response // inferred from mutant phenotype /// 1902219 // negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress // inferred from mutant phenotype /// 2000767 // positive regulation of cytoplasmic translation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005844 // polysome // inferred from electronic annotation /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay -253.03 634.29 -2.61 0.03 0.06 -4.52
222047_s_at 222047_s_at AI523895 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI523895 /FEA=EST /DB_XREF=gi:4438030 /DB_XREF=est:tg97g03.x1 /CLONE=IMAGE:2116756 /UG=Hs.111801 arsenate resistance protein ARS2 AI523895 serrate, RNA effector molecule SRRT 51593 NM_001128852 /// NM_001128853 /// NM_001128854 /// NM_015908 /// NM_182800 /// XM_005250405 /// XM_005250406 /// XM_005250407 /// XM_005250408 /// XM_006716023 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031053 // primary miRNA processing // inferred from mutant phenotype /// 0046685 // response to arsenic-containing substance // non-traceable author statement /// 0097150 // neuronal stem cell maintenance // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 69.72 364.79 2.61 0.03 0.06 -4.52
213762_x_at 213762_x_at AI452524 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI452524 /FEA=EST /DB_XREF=gi:4285955 /DB_XREF=est:tj62f01.x1 /CLONE=IMAGE:2146105 /UG=Hs.146381 RNA binding motif protein, X chromosome AI452524 uncharacterized LOC101928747 /// RNA binding motif protein, X-linked /// small nucleolar RNA, C/D box 61 LOC101928747 /// RBMX /// SNORD61 26787 /// 27316 /// 101928747 NM_001164803 /// NM_002139 /// NR_002735 /// NR_028476 /// NR_028477 /// XR_244543 /// XR_254186 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0048026 // positive regulation of mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0071347 // cellular response to interleukin-1 // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // non-traceable author statement /// 0044530 // supraspliceosomal complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001047 // core promoter binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -64.73 365.76 -2.61 0.03 0.06 -4.52
201444_s_at 201444_s_at NM_005765 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005765.1 /DEF=Homo sapiens ATPase, H+ transporting, lysosomal (vacuolar proton pump) membrane sector associated protein M8-9 (APT6M8-9), mRNA. /FEA=mRNA /GEN=APT6M8-9 /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) membrane sector associated protein M8-9 /DB_XREF=gi:5031590 /UG=Hs.183434 ATPase, H+ transporting, lysosomal (vacuolar proton pump) membrane sector associated protein M8-9 /FL=gb:AF248966.1 gb:NM_005765.1 NM_005765 ATPase, H+ transporting, lysosomal accessory protein 2 ATP6AP2 10159 NM_005765 0002003 // angiotensin maturation // inferred from direct assay /// 0002003 // angiotensin maturation // traceable author statement /// 0006508 // proteolysis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0021903 // rostrocaudal neural tube patterning // inferred from mutant phenotype /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0032914 // positive regulation of transforming growth factor beta1 production // inferred from direct assay /// 0043408 // regulation of MAPK cascade // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048069 // eye pigmentation // inferred from mutant phenotype /// 0060323 // head morphogenesis // inferred from mutant phenotype 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004190 // aspartic-type endopeptidase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation -65.15 376.80 -2.60 0.03 0.06 -4.52
201111_at 201111_at AF053641 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF053641.1 /DEF=Homo sapiens brain cellular apoptosis susceptibility protein (CSE1) mRNA, complete cds. /FEA=mRNA /GEN=CSE1 /PROD=cellular apoptosis susceptibility protein /DB_XREF=gi:3560556 /UG=Hs.90073 chromosome segregation 1 (yeast homolog)-like /FL=gb:U33286.1 gb:AF053641.1 gb:NM_001316.1 AF053641 CSE1 chromosome segregation 1-like (yeast) CSE1L 1434 NM_001256135 /// NM_001316 /// NM_177436 /// NR_045796 0006611 // protein export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008262 // importin-alpha export receptor activity // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation 43.02 216.14 2.60 0.03 0.06 -4.52
202378_s_at 202378_s_at NM_017526 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017526.1 /DEF=Homo sapiens leptin receptor gene-related protein (HSOBRGRP), mRNA. /FEA=mRNA /GEN=HSOBRGRP /PROD=leptin receptor gene-related protein /DB_XREF=gi:8923784 /UG=Hs.23581 leptin receptor gene-related protein /FL=gb:NM_017526.1 NM_017526 leptin receptor overlapping transcript LEPROT 54741 NM_001198681 /// NM_001198683 /// NM_017526 0046426 // negative regulation of JAK-STAT cascade // inferred from direct assay /// 0060400 // negative regulation of growth hormone receptor signaling pathway // inferred from direct assay /// 2000009 // negative regulation of protein localization to cell surface // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 71.75 320.55 2.60 0.03 0.06 -4.52
211404_s_at 211404_s_at BC004371 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004371.1 /DEF=Homo sapiens, clone MGC:10449, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:10449) /DB_XREF=gi:13325115 /UG=Hs.279518 amyloid beta (A4) precursor-like protein 2 /FL=gb:BC004371.1 BC004371 amyloid beta (A4) precursor-like protein 2 APLP2 334 NM_001142276 /// NM_001142277 /// NM_001142278 /// NM_001243299 /// NM_001642 /// NR_024515 /// NR_024516 0001967 // suckling behavior // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // non-traceable author statement /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046914 // transition metal ion binding // inferred from electronic annotation -65.27 665.46 -2.60 0.03 0.06 -4.52
206780_at 206780_at NM_000818 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000818.1 /DEF=Homo sapiens glutamate decarboxylase 2 (pancreatic islets and brain, 65kD) (GAD2), mRNA. /FEA=mRNA /GEN=GAD2 /PROD=glutamate decarboxylase 2 /DB_XREF=gi:4503874 /UG=Hs.170808 glutamate decarboxylase 2 (pancreatic islets and brain, 65kD) /FL=gb:M74826.1 gb:NM_000818.1 NM_000818 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) GAD2 2572 NM_000818 /// NM_001134366 0006540 // glutamate decarboxylation to succinate // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0061202 // clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004351 // glutamate decarboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016595 // glutamate binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 37.03 41.76 2.60 0.03 0.06 -4.52
213535_s_at 213535_s_at AA910614 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA910614 /FEA=EST /DB_XREF=gi:3049904 /DB_XREF=est:ok61b04.s1 /CLONE=IMAGE:1518415 /UG=Hs.84285 ubiquitin-conjugating enzyme E2I (homologous to yeast UBC9) AA910614 ubiquitin-conjugating enzyme E2I UBE2I 7329 NM_003345 /// NM_194259 /// NM_194260 /// NM_194261 /// XM_005255540 /// XM_005255541 /// XM_006720938 /// XM_006720939 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0016925 // protein sumoylation // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0033145 // positive regulation of intracellular steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000795 // synaptonemal complex // traceable author statement /// 0001650 // fibrillar center // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0016604 // nuclear body // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0043398 // HLH domain binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0071535 // RING-like zinc finger domain binding // inferred from physical interaction -262.35 995.77 -2.60 0.03 0.06 -4.52
214728_x_at 214728_x_at AK026573 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026573.1 /DEF=Homo sapiens cDNA: FLJ22920 fis, clone KAT06686, highly similar to HSU29175 Human transcriptional activator (BRG1) mRNA. /FEA=mRNA /DB_XREF=gi:10439456 /UG=Hs.78202 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 AK026573 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 SMARCA4 6597 NM_001128844 /// NM_001128845 /// NM_001128846 /// NM_001128847 /// NM_001128848 /// NM_001128849 /// NM_003072 /// XM_005260028 /// XM_005260030 /// XM_005260031 /// XM_005260032 /// XM_005260033 /// XM_005260034 /// XM_005260035 /// XM_006722845 /// XM_006722846 /// XM_006722847 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003407 // neural retina development // inferred from expression pattern /// 0006200 // ATP catabolic process // inferred from genetic interaction /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred by curator /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007070 // negative regulation of transcription from RNA polymerase II promoter during mitosis // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035887 // aortic smooth muscle cell differentiation // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0002039 // p53 binding // inferred from physical interaction /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from genetic interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042393 // histone binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay 72.20 244.05 2.60 0.03 0.06 -4.52
201569_s_at 201569_s_at NM_015380 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015380.1 /DEF=Homo sapiens CGI-51 protein (CGI-51), mRNA. /FEA=mRNA /GEN=CGI-51 /PROD=CGI-51 protein /DB_XREF=gi:7661541 /UG=Hs.4877 CGI-51 protein /FL=gb:AF151809.1 gb:NM_015380.1 NM_015380 SAMM50 sorting and assembly machinery component SAMM50 25813 NM_015380 0006626 // protein targeting to mitochondrion // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045040 // protein import into mitochondrial outer membrane // inferred from direct assay 0001401 // mitochondrial sorting and assembly machinery complex // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0019867 // outer membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 33.20 132.62 2.60 0.03 0.06 -4.52
202315_s_at 202315_s_at NM_004327 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004327.2 /DEF=Homo sapiens breakpoint cluster region (BCR), transcript variant 1, mRNA. /FEA=mRNA /GEN=BCR /PROD=breakpoint cluster region, isoform 1 /DB_XREF=gi:11038638 /UG=Hs.234799 breakpoint cluster region /FL=gb:NM_004327.2 NM_004327 breakpoint cluster region BCR 613 NM_004327 /// NM_021574 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032855 // positive regulation of Rac GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0043314 // negative regulation of neutrophil degranulation // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030675 // Rac GTPase activator activity // inferred from electronic annotation -83.80 261.75 -2.60 0.03 0.06 -4.52
203437_at 203437_at NM_003876 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003876.1 /DEF=Homo sapiens putative receptor protein (PMI), mRNA. /FEA=mRNA /GEN=PMI /PROD=putative receptor protein /DB_XREF=gi:4505900 /UG=Hs.15196 putative receptor protein /FL=gb:BC002819.1 gb:BC005268.1 gb:NM_003876.1 NM_003876 transmembrane protein 11 TMEM11 8834 NM_003876 /// NR_024547 0007005 // mitochondrion organization // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031305 // integral component of mitochondrial inner membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 26.22 98.49 2.60 0.03 0.06 -4.52
201061_s_at 201061_s_at M81635 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M81635.1 /DEF=Homo sapiens erythrocyte membrane protein mRNA, complete cds. /FEA=mRNA /GEN=stomatin peptide /PROD=stomatin peptide /DB_XREF=gi:181183 /UG=Hs.160483 erythrocyte membrane protein band 7.2 (stomatin) /FL=gb:M81635.1 gb:NM_004099.1 M81635 stomatin STOM 2040 NM_001270526 /// NM_001270527 /// NM_004099 /// NM_198194 /// NR_073037 0051260 // protein homooligomerization // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 142.55 461.30 2.60 0.03 0.06 -4.52
213088_s_at 213088_s_at BE551340 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE551340 /FEA=EST /DB_XREF=gi:9793032 /DB_XREF=est:7b63c12.x1 /CLONE=IMAGE:3232918 /UG=Hs.44131 KIAA0974 protein BE551340 DnaJ (Hsp40) homolog, subfamily C, member 9 DNAJC9 23234 NM_015190 /// XM_006717734 0006412 // translation // inferred from electronic annotation /// 0035176 // social behavior // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 62.95 259.43 2.60 0.03 0.06 -4.52
218205_s_at 218205_s_at NM_017572 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017572.1 /DEF=Homo sapiens G protein-coupled receptor kinase 7 (GPRK7), mRNA. /FEA=mRNA /GEN=GPRK7 /PROD=G protein-coupled receptor kinase 7 /DB_XREF=gi:9994196 /UG=Hs.261828 G protein-coupled receptor kinase 7 /FL=gb:AF237776.1 gb:AF125532.1 gb:NM_017572.1 NM_017572 MAP kinase interacting serine/threonine kinase 2 MKNK2 2872 NM_017572 /// NM_199054 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0071243 // cellular response to arsenic-containing substance // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 93.57 247.99 2.60 0.03 0.06 -4.52
203882_at 203882_at NM_006084 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006084.1 /DEF=Homo sapiens interferon-stimulated transcription factor 3, gamma (48kD) (ISGF3G), mRNA. /FEA=mRNA /GEN=ISGF3G /PROD=interferon-stimulated transcription factor 3,gamma (48kD) /DB_XREF=gi:5174474 /UG=Hs.1706 interferon-stimulated transcription factor 3, gamma (48kD) /FL=gb:M87503.1 gb:NM_006084.1 NM_006084 interferon regulatory factor 9 IRF9 10379 NM_006084 0000209 // protein polyubiquitination // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0023035 // CD40 signaling pathway // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045351 // type I interferon biosynthetic process // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0097039 // protein linear polyubiquitination // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0009898 // cytoplasmic side of plasma membrane // inferred from sequence or structural similarity /// 0035631 // CD40 receptor complex // inferred from sequence or structural similarity /// 0071797 // LUBAC complex // inferred from direct assay /// 0071797 // LUBAC complex // inferred from electronic annotation 0000975 // regulatory region DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -44.08 100.11 -2.59 0.03 0.06 -4.52
202443_x_at 202443_x_at AA291203 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA291203 /FEA=EST /DB_XREF=gi:1939386 /DB_XREF=est:zt38h02.s1 /CLONE=IMAGE:724659 /UG=Hs.8121 Notch (Drosophila) homolog 2 /FL=gb:AF315356.1 gb:NM_024408.1 AA291203 notch 2 NOTCH2 4853 NM_001200001 /// NM_024408 /// XM_005270901 /// XM_005270902 /// XM_006710667 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001709 // cell fate determination // traceable author statement /// 0001890 // placenta development // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002437 // inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0003184 // pulmonary valve morphogenesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006959 // humoral immune response // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007275 // multicellular organismal development // non-traceable author statement /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009887 // organ morphogenesis // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0016049 // cell growth // inferred from direct assay /// 0019827 // stem cell maintenance // traceable author statement /// 0030097 // hemopoiesis // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0046579 // positive regulation of Ras protein signal transduction // inferred from direct assay /// 0046849 // bone remodeling // inferred from mutant phenotype /// 0050793 // regulation of developmental process // inferred from electronic annotation /// 0060413 // atrial septum morphogenesis // inferred from mutant phenotype /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0072602 // interleukin-4 secretion // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0004872 // receptor activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0038049 // ligand-activated RNA polymerase II transcription factor binding transcription factor activity // traceable author statement -78.95 301.93 -2.59 0.03 0.06 -4.52
221781_s_at 221781_s_at BG168666 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG168666 /FEA=EST /DB_XREF=gi:12675369 /DB_XREF=est:602319904F1 /CLONE=IMAGE:4415256 /UG=Hs.1098 DKFZp434J1813 protein BG168666 DnaJ (Hsp40) homolog, subfamily C, member 10 DNAJC10 54431 NM_001271581 /// NM_018981 /// NR_073365 /// NR_073366 /// NR_073367 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // inferred from electronic annotation /// 0006304 // DNA modification // inferred from electronic annotation /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from sequence or structural similarity /// 0034975 // protein folding in endoplasmic reticulum // inferred from direct assay /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0034663 // endoplasmic reticulum chaperone complex // inferred from direct assay 0001671 // ATPase activator activity // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0003912 // DNA nucleotidylexotransferase activity // inferred from electronic annotation /// 0003912 // DNA nucleotidylexotransferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from direct assay /// 0015035 // protein disulfide oxidoreductase activity // inferred from sequence or structural similarity /// 0015036 // disulfide oxidoreductase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016671 // oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from direct assay /// 0051117 // ATPase binding // inferred from physical interaction /// 0051787 // misfolded protein binding // inferred from direct assay -43.20 204.72 -2.59 0.03 0.06 -4.52
216959_x_at 216959_x_at U55258 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U55258 /DEF=Human hBRAVONr-CAM precursor (hBRAVONr-CAM) gene, complete cds /FEA=CDS /DB_XREF=gi:1621282 /UG=Hs.7912 neuronal cell adhesion molecule U55258 neuronal cell adhesion molecule NRCAM 4897 NM_001037132 /// NM_001037133 /// NM_001193582 /// NM_001193583 /// NM_001193584 /// NM_005010 /// XM_005250373 /// XM_005250380 /// XM_005250383 /// XM_005250385 /// XM_006716003 /// XM_006716004 /// XM_006716005 /// XM_006716006 /// XM_006716007 /// XM_006716008 /// XM_006716009 /// XM_006716010 /// XM_006716011 /// XM_006716012 /// XM_006716013 /// XM_006716014 /// XR_428177 /// XR_428178 0001525 // angiogenesis // inferred from expression pattern /// 0001764 // neuron migration // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007409 // axonogenesis // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007413 // axonal fasciculation // non-traceable author statement /// 0007416 // synapse assembly // traceable author statement /// 0007417 // central nervous system development // non-traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0010975 // regulation of neuron projection development // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // non-traceable author statement /// 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0030516 // regulation of axon extension // non-traceable author statement /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0034113 // heterotypic cell-cell adhesion // inferred from electronic annotation /// 0045162 // clustering of voltage-gated sodium channels // inferred from direct assay /// 0045666 // positive regulation of neuron differentiation // non-traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043005 // neuron projection // non-traceable author statement /// 0043194 // axon initial segment // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030506 // ankyrin binding // inferred from direct assay /// 0086080 // protein binding involved in heterotypic cell-cell adhesion // inferred from electronic annotation -70.97 129.59 -2.59 0.03 0.06 -4.52
204049_s_at 204049_s_at NM_014721 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014721.1 /DEF=Homo sapiens KIAA0680 gene product (KIAA0680), mRNA. /FEA=mRNA /GEN=KIAA0680 /PROD=KIAA0680 gene product /DB_XREF=gi:7662247 /UG=Hs.102471 KIAA0680 gene product /FL=gb:AB014580.1 gb:NM_014721.1 NM_014721 phosphatase and actin regulator 2 PHACTR2 9749 NM_001100164 /// NM_001100165 /// NM_001100166 /// NM_014721 0043086 // negative regulation of catalytic activity // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 65.05 287.73 2.59 0.03 0.06 -4.52
212284_x_at 212284_x_at BG498776 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG498776 /FEA=EST /DB_XREF=gi:13460293 /DB_XREF=est:602544416F1 /CLONE=IMAGE:4666995 /UG=Hs.326456 hypothetical protein FLJ20030 BG498776 uncharacterized LOC101928826 /// tumor protein, translationally-controlled 1 LOC101928826 /// TPT1 7178 /// 101928826 NM_001286272 /// NM_001286273 /// NM_003295 /// XR_242670 /// XR_250536 /// XR_252641 0006816 // calcium ion transport // inferred by curator /// 0006874 // cellular calcium ion homeostasis // inferred by curator /// 0009615 // response to virus // inferred from expression pattern /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype /// 2000384 // negative regulation of ectoderm development // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005771 // multivesicular body // inferred from direct assay /// 0045298 // tubulin complex // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -877.15 4537.65 -2.59 0.03 0.06 -4.52
203534_at 203534_at NM_014462 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014462.1 /DEF=Homo sapiens Lsm1 protein (LSM1), mRNA. /FEA=mRNA /GEN=LSM1 /PROD=Lsm1 protein /DB_XREF=gi:7657312 /UG=Hs.111783 Lsm1 protein /FL=gb:BC001767.1 gb:AF000177.1 gb:NM_014462.1 NM_014462 LSM1, U6 small nuclear RNA associated LSM1 27257 NM_014462 /// NR_045492 /// NR_045493 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement /// 0071044 // histone mRNA catabolic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 70.18 281.76 2.59 0.03 0.06 -4.52
210908_s_at 210908_s_at AB055804 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB055804.1 /DEF=Homo sapiens mRNA for MM-1 beta, complete cds. /FEA=mRNA /GEN=mm-1 /PROD=MM-1 beta /DB_XREF=gi:12957174 /UG=Hs.288856 prefoldin 5 /FL=gb:AB055804.1 AB055804 prefoldin subunit 5 PFDN5 5204 NM_002624 /// NM_145896 /// NM_145897 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0016272 // prefoldin complex // inferred from electronic annotation 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from electronic annotation 84.80 596.83 2.59 0.03 0.06 -4.52
208825_x_at 208825_x_at U43701 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U43701.1 /DEF=Human ribosomal protein L23a mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L23a /DB_XREF=gi:1399085 /UG=Hs.184776 ribosomal protein L23a /FL=gb:U43701.1 U43701 ribosomal protein L23a /// small nucleolar RNA, C/D box 42A RPL23A /// SNORD42A 6147 /// 26809 NM_000984 /// NR_000014 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031932 // TORC2 complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -1189.23 5429.59 -2.59 0.03 0.06 -4.52
208709_s_at 208709_s_at U64898 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U64898.1 /DEF=Homo sapiens NRD convertase mRNA, complete cds. /FEA=mRNA /PROD=NRD convertase /DB_XREF=gi:2897866 /UG=Hs.4099 nardilysin (N-arginine dibasic convertase) /FL=gb:U64898.1 U64898 nardilysin (N-arginine dibasic convertase) NRD1 4898 NM_001101662 /// NM_001242361 /// NM_002525 /// XM_005270903 0006508 // proteolysis // non-traceable author statement /// 0007528 // neuromuscular junction development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016477 // cell migration // traceable author statement /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from direct assay /// 0052548 // regulation of endopeptidase activity // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048408 // epidermal growth factor binding // traceable author statement -36.15 263.70 -2.58 0.03 0.06 -4.52
218304_s_at 218304_s_at NM_022776 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022776.1 /DEF=Homo sapiens hypothetical protein FLJ13164 (FLJ13164), mRNA. /FEA=mRNA /GEN=FLJ13164 /PROD=hypothetical protein FLJ13164 /DB_XREF=gi:12232460 /UG=Hs.61260 hypothetical protein FLJ13164 /FL=gb:NM_022776.1 NM_022776 oxysterol binding protein-like 11 OSBPL11 114885 NM_022776 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0010890 // positive regulation of sequestering of triglyceride // inferred from mutant phenotype /// 0045444 // fat cell differentiation // inferred from mutant phenotype 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 37.12 67.74 2.58 0.03 0.06 -4.52
200756_x_at 200756_x_at U67280 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U67280.1 /DEF=Homo sapiens calumenin mRNA, complete cds. /FEA=mRNA /PROD=calumenin /DB_XREF=gi:2809323 /UG=Hs.7753 calumenin /FL=gb:U67280.1 gb:AF013759.1 gb:NM_001219.2 U67280 calumenin CALU 813 NM_001130674 /// NM_001199671 /// NM_001199672 /// NM_001199673 /// NM_001199674 /// NM_001219 /// NR_074086 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 100.55 306.60 2.58 0.03 0.06 -4.52
211065_x_at 211065_x_at BC006422 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006422.1 /DEF=Homo sapiens, clone MGC:12724, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:12724) /DB_XREF=gi:13623608 /FL=gb:BC006422.1 BC006422 phosphofructokinase, liver PFKL 5211 NM_001002021 /// NM_002626 /// NR_024108 /// XM_005261135 /// XM_005261136 /// XM_005261137 /// XM_006724011 /// XM_006724012 0005975 // carbohydrate metabolic process // traceable author statement /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006002 // fructose 6-phosphate metabolic process // inferred from mutant phenotype /// 0006006 // glucose metabolic process // traceable author statement /// 0006096 // glycolytic process // inferred from direct assay /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005945 // 6-phosphofructokinase complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from direct assay /// 0003872 // 6-phosphofructokinase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from electronic annotation /// 0070061 // fructose binding // inferred from direct assay /// 0070095 // fructose-6-phosphate binding // inferred from direct assay -62.75 205.85 -2.58 0.03 0.06 -4.52
211123_at 211123_at D87920 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D87920.1 /DEF=Homo sapiens mRNA for sodium iodide symporter, complete cds. /FEA=mRNA /PROD=sodium iodide symporter /DB_XREF=gi:2887404 /UG=Hs.103983 solute carrier family 5 (sodium iodide symporter), member 5 /FL=gb:U66088.1 gb:D87920.1 gb:NM_000453.1 D87920 solute carrier family 5 (sodium/iodide cotransporter), member 5 SLC5A5 6528 NM_000453 /// XM_005260024 0006590 // thyroid hormone generation // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0015705 // iodide transport // inferred from mutant phenotype /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0035725 // sodium ion transmembrane transport // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071371 // cellular response to gonadotropin stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008507 // sodium:iodide symporter activity // inferred from electronic annotation /// 0015111 // iodide transmembrane transporter activity // inferred from mutant phenotype /// 0015293 // symporter activity // inferred from electronic annotation -42.60 81.70 -2.58 0.04 0.06 -4.52
207842_s_at 207842_s_at NM_007359 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007359.1 /DEF=Homo sapiens MLN51 protein (MLN51), mRNA. /FEA=mRNA /GEN=MLN51 /PROD=MLN51 protein /DB_XREF=gi:6678887 /UG=Hs.83422 MLN51 protein /FL=gb:NM_007359.1 NM_007359 cancer susceptibility candidate 3 /// microRNA 6866 CASC3 /// MIR6866 22794 /// 102466986 NM_007359 /// NR_106926 /// XM_005257163 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0008298 // intracellular mRNA localization // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 36.05 115.58 2.58 0.04 0.06 -4.52
201925_s_at 201925_s_at NM_000574 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000574.1 /DEF=Homo sapiens decay accelerating factor for complement (CD55, Cromer blood group system) (DAF), mRNA. /FEA=mRNA /GEN=DAF /PROD=decay accelerating factor for complement (CD55,Cromer blood group system) /DB_XREF=gi:10835142 /UG=Hs.1369 decay accelerating factor for complement (CD55, Cromer blood group system) /FL=gb:NM_000574.1 gb:BC001288.1 gb:M31516.1 NM_000574 CD55 molecule, decay accelerating factor for complement (Cromer blood group) CD55 1604 NM_000574 /// NM_001114543 /// NM_001114544 /// NM_001114752 /// XM_005273077 0002376 // immune system process // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from direct assay /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009615 // response to virus // inferred from direct assay /// 0009615 // response to virus // inferred from electronic annotation /// 0030449 // regulation of complement activation // traceable author statement /// 0031664 // regulation of lipopolysaccharide-mediated signaling pathway // inferred from direct assay /// 0035743 // CD4-positive, alpha-beta T cell cytokine production // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045730 // respiratory burst // non-traceable author statement /// 0045916 // negative regulation of complement activation // inferred from direct assay /// 0060137 // maternal process involved in parturition // inferred from electronic annotation /// 2000516 // positive regulation of CD4-positive, alpha-beta T cell activation // inferred from direct assay /// 2000563 // positive regulation of CD4-positive, alpha-beta T cell proliferation // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from direct assay /// 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from direct assay 114.90 326.02 2.58 0.04 0.06 -4.52
218927_s_at 218927_s_at NM_018641 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018641.1 /DEF=Homo sapiens chondroitin 4-O-sulfotransferase 2 (C4S-2), mRNA. /FEA=mRNA /GEN=C4S-2 /PROD=chondroitin 4-O-sulfotransferase 2 /DB_XREF=gi:8922111 /UG=Hs.25204 chondroitin 4-O-sulfotransferase 2 /FL=gb:BC002918.1 gb:NM_018641.1 gb:AF239822.1 NM_018641 carbohydrate (chondroitin 4) sulfotransferase 12 CHST12 55501 NM_001243794 /// NM_001243795 /// NM_018641 0005975 // carbohydrate metabolic process // traceable author statement /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // inferred from direct assay /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0030208 // dermatan sulfate biosynthetic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // non-traceable author statement 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047756 // chondroitin 4-sulfotransferase activity // inferred from direct assay /// 0050656 // 3'-phosphoadenosine 5'-phosphosulfate binding // non-traceable author statement 55.65 83.83 2.58 0.04 0.06 -4.52
218396_at 218396_at NM_017684 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017684.1 /DEF=Homo sapiens hypothetical protein FLJ20136 (FLJ20136), mRNA. /FEA=mRNA /GEN=FLJ20136 /PROD=hypothetical protein FLJ20136 /DB_XREF=gi:8923138 /UG=Hs.24817 hypothetical protein FLJ20136 /FL=gb:NM_017684.1 NM_017684 vacuolar protein sorting 13 homolog C (S. cerevisiae) VPS13C 54832 NM_001018088 /// NM_017684 /// NM_018080 /// NM_020821 0070062 // extracellular vesicular exosome // inferred from direct assay -53.55 204.95 -2.58 0.04 0.06 -4.52
213883_s_at 213883_s_at AA012917 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA012917 /FEA=EST /DB_XREF=gi:1473944 /DB_XREF=est:ze27c03.s1 /CLONE=IMAGE:360196 /UG=Hs.180532 glucose phosphate isomerase AA012917 TM2 domain containing 1 TM2D1 83941 NM_032027 /// XM_005271250 /// XR_246299 0006915 // apoptotic process // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // inferred from electronic annotation 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 85.68 187.51 2.58 0.04 0.06 -4.52
217765_at 217765_at NM_013392 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013392.1 /DEF=Homo sapiens nuclear receptor binding protein (NRBP), mRNA. /FEA=mRNA /GEN=NRBP /PROD=nuclear receptor binding protein /DB_XREF=gi:7019332 /UG=Hs.272736 nuclear receptor binding protein /FL=gb:BC001221.1 gb:AF113249.1 gb:NM_013392.1 NM_013392 nuclear receptor binding protein 1 NRBP1 29959 NM_013392 /// XM_005264274 /// XM_006711999 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 31.98 109.69 2.57 0.04 0.06 -4.52
202749_at 202749_at NM_004627 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004627.1 /DEF=Homo sapiens tryptophan rich basic protein (WRB), mRNA. /FEA=mRNA /GEN=WRB /PROD=tryptophan rich basic protein /DB_XREF=gi:4759325 /UG=Hs.198308 tryptophan rich basic protein /FL=gb:NM_004627.1 NM_004627 tryptophan rich basic protein WRB 7485 NM_001146218 /// NM_004627 /// XM_005261059 /// XM_005261060 /// XM_005261061 0071816 // tail-anchored membrane protein insertion into ER membrane // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 46.92 280.04 2.57 0.04 0.06 -4.52
201164_s_at 201164_s_at BG474429 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG474429 /FEA=EST /DB_XREF=gi:13406706 /DB_XREF=est:602517152F1 /CLONE=IMAGE:4648765 /UG=Hs.153834 pumilio (Drosophila) homolog 1 /FL=gb:AF315592.1 gb:NM_014676.1 BG474429 pumilio RNA-binding family member 1 PUM1 9698 NM_001020658 /// NM_014676 0006417 // regulation of translation // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -46.45 162.85 -2.57 0.04 0.06 -4.52
210434_x_at 210434_x_at AF151056 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF151056.1 /DEF=Homo sapiens HSPC222 mRNA, complete cds. /FEA=mRNA /PROD=HSPC222 /DB_XREF=gi:7106833 /UG=Hs.323093 Homo sapiens, jumping translocation breakpoint, clone MGC:10274, mRNA, complete cds /FL=gb:AF151056.1 AF151056 jumping translocation breakpoint JTB 10899 NM_006694 0000910 // cytokinesis // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay 0019901 // protein kinase binding // inferred from direct assay 87.08 827.04 2.57 0.04 0.06 -4.52
219052_at 219052_at NM_024747 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024747.1 /DEF=Homo sapiens hypothetical protein FLJ22501 (FLJ22501), mRNA. /FEA=mRNA /GEN=FLJ22501 /PROD=hypothetical protein FLJ22501 /DB_XREF=gi:13376073 /UG=Hs.125133 hypothetical protein FLJ22501 /FL=gb:NM_024747.1 NM_024747 Hermansky-Pudlak syndrome 6 HPS6 79803 NM_024747 0006996 // organelle organization // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation /// 0072657 // protein localization to membrane // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031084 // BLOC-2 complex // inferred from physical interaction /// 0031090 // organelle membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0030742 // GTP-dependent protein binding // inferred from physical interaction 31.05 118.80 2.57 0.04 0.06 -4.52
200719_at 200719_at BE964043 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE964043 /FEA=EST /DB_XREF=gi:11767371 /DB_XREF=est:601657616R1 /CLONE=IMAGE:3875955 /UG=Hs.171626 transcription elongation factor B (SIII), polypeptide 1-like /FL=gb:NM_003197.2 BE964043 S-phase kinase-associated protein 1 SKP1 6500 NM_006930 /// NM_170679 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0035518 // histone H2A monoubiquitination // inferred from direct assay /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay /// 0031467 // Cul7-RING ubiquitin ligase complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 34.22 106.29 2.57 0.04 0.06 -4.52
200068_s_at 200068_s_at M94859 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M94859.1 /DEF=Human calnexin mRNA, complete cds. /FEA=mRNA /PROD=calnexin /DB_XREF=gi:179831 /UG=Hs.155560 calnexin /FL=gb:NM_001746.1 gb:BC003552.1 gb:M94859.1 gb:M98452.1 gb:L10284.1 gb:L18887.1 M94859 calnexin CANX 821 NM_001024649 /// NM_001746 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0009306 // protein secretion // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048488 // synaptic vesicle endocytosis // inferred from sequence or structural similarity /// 0061077 // chaperone-mediated protein folding // inferred from electronic annotation /// 0072583 // clathrin-mediated endocytosis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0001948 // glycoprotein binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation -166.45 2028.55 -2.57 0.04 0.06 -4.52
212540_at 212540_at BG476661 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG476661 /FEA=EST /DB_XREF=gi:13408940 /DB_XREF=est:602524946F1 /CLONE=IMAGE:4643458 /UG=Hs.76932 cell division cycle 34 BG476661 cell division cycle 34 CDC34 997 NM_004359 /// XM_005259690 /// XM_006722952 0000082 // G1/S transition of mitotic cell cycle // non-traceable author statement /// 0000209 // protein polyubiquitination // inferred from direct assay /// 0006270 // DNA replication initiation // non-traceable author statement /// 0006464 // cellular protein modification process // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // non-traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043951 // negative regulation of cAMP-mediated signaling // inferred from direct assay /// 0070848 // response to growth factor // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0090261 // positive regulation of inclusion body assembly // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -59.25 190.40 -2.56 0.04 0.06 -4.52
217356_s_at 217356_s_at S81916 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S81916.1 /DEF=phosphoglycerate kinase {alternatively spliced} human, phosphoglycerate kinase deficient patient with episodes of muscl, mRNA Partial Mutant, 307 nt. /FEA=mRNA /PROD=phosphoglycerate kinase /DB_XREF=gi:1470308 /UG=Hs.169313 Phosphoglycerate kinase {alternatively spliced} human, phosphoglycerate kinase deficient patient with episodes of muscl, mRNA Partial Mutant, 307 nt S81916 phosphoglycerate kinase 1 PGK1 5230 NM_000291 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004618 // phosphoglycerate kinase activity // not recorded /// 0004618 // phosphoglycerate kinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -269.95 876.83 -2.56 0.04 0.06 -4.52
201872_s_at 201872_s_at AI002002 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI002002 /FEA=EST /DB_XREF=gi:3202473 /DB_XREF=est:ot42e10.s1 /CLONE=IMAGE:1619466 /UG=Hs.12013 ATP-binding cassette, sub-family E (OABP), member 1 /FL=gb:NM_002940.1 AI002002 ATP-binding cassette, sub-family E (OABP), member 1 ABCE1 6059 NM_001040876 /// NM_002940 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006401 // RNA catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008428 // ribonuclease inhibitor activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 67.25 364.05 2.56 0.04 0.06 -4.52
202771_at 202771_at NM_014745 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014745.1 /DEF=Homo sapiens KIAA0233 gene product (KIAA0233), mRNA. /FEA=mRNA /GEN=KIAA0233 /PROD=KIAA0233 gene product /DB_XREF=gi:7662013 /UG=Hs.79077 KIAA0233 gene product /FL=gb:D87071.1 gb:NM_014745.1 NM_014745 piezo-type mechanosensitive ion channel component 1 PIEZO1 9780 NM_001142864 /// XM_006721353 /// XM_006721354 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from sequence or structural similarity /// 0033625 // positive regulation of integrin activation // inferred from mutant phenotype /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from mutant phenotype /// 0034220 // ion transmembrane transport // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0050982 // detection of mechanical stimulus // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation 0005261 // cation channel activity // inferred from sequence or structural similarity /// 0008381 // mechanically-gated ion channel activity // inferred from electronic annotation -197.80 484.98 -2.56 0.04 0.06 -4.52
211981_at 211981_at NM_001845 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_001845.1 /DEF=Homo sapiens collagen, type IV, alpha 1 (COL4A1), mRNA. /FEA=CDS /GEN=COL4A1 /PROD=collagen, type IV, alpha 1 /DB_XREF=gi:7656984 /UG=Hs.119129 collagen, type IV, alpha 1 /FL=gb:NM_001845.1 NM_001845 collagen, type IV, alpha 1 COL4A1 1282 NM_001845 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from mutant phenotype /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from mutant phenotype /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from mutant phenotype /// 0061304 // retinal blood vessel morphogenesis // inferred from mutant phenotype /// 0061333 // renal tubule morphogenesis // inferred from mutant phenotype /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// 0071711 // basement membrane organization // inferred from mutant phenotype 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005587 // collagen type IV trimer // inferred from mutant phenotype /// 0005604 // basement membrane // inferred by curator /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // inferred from sequence or structural similarity 0005201 // extracellular matrix structural constituent // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0030023 // extracellular matrix constituent conferring elasticity // inferred by curator /// 0048407 // platelet-derived growth factor binding // inferred from direct assay -240.10 946.98 -2.56 0.04 0.06 -4.52
211799_x_at 211799_x_at U62824 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U62824.1 /DEF=Homo sapiens HLA class I heavy chain (HLA-Cw*1701) mRNA, complete cds. /FEA=CDS /GEN=HLA-Cw*1701 /PROD=HLA class I heavy chain /DB_XREF=gi:1575443 /UG=Hs.287811 H.sapiens mRNA for HLA-C alpha chain (Cw*1701) /FL=gb:U62824.1 U62824 major histocompatibility complex, class I, C HLA-C 3107 NM_001243042 /// NM_002117 0001539 // cilium or flagellum-dependent cell motility // non-traceable author statement /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0006955 // immune response // non-traceable author statement /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005858 // axonemal dynein complex // non-traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005102 // receptor binding // not recorded /// 0032395 // MHC class II receptor activity // non-traceable author statement /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0046977 // TAP binding // inferred from direct assay -65.47 143.96 -2.56 0.04 0.06 -4.52
201921_at 201921_at NM_004125 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004125.1 /DEF=Homo sapiens guanine nucleotide binding protein 10 (GNG10), mRNA. /FEA=mRNA /GEN=GNG10 /PROD=guanine nucleotide binding protein 10 /DB_XREF=gi:4758445 /UG=Hs.79126 guanine nucleotide binding protein 10 /FL=gb:NM_004125.1 gb:U31383.1 NM_004125 guanine nucleotide binding protein (G protein), gamma 10 GNG10 2790 NM_001017998 /// NM_001198664 0006112 // energy reserve metabolic process // traceable author statement /// 0006184 // GTP catabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation 91.85 318.18 2.56 0.04 0.06 -4.52
201521_s_at 201521_s_at NM_007362 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007362.1 /DEF=Homo sapiens nuclear cap binding protein subunit 2, 20kD (NCBP2), mRNA. /FEA=mRNA /GEN=NCBP2 /PROD=nuclear cap binding protein subunit 2, 20kD /DB_XREF=gi:6679063 /UG=Hs.240770 nuclear cap binding protein subunit 2, 20kD /FL=gb:D59253.1 gb:BC001255.1 gb:NM_007362.1 NM_007362 nuclear cap binding protein subunit 2, 20kDa NCBP2 22916 NM_001042540 /// NM_007362 /// XM_005269313 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from direct assay /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // inferred from direct assay /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006408 // snRNA export from nucleus // inferred from sequence or structural similarity /// 0006408 // snRNA export from nucleus // non-traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008334 // histone mRNA metabolic process // traceable author statement /// 0008380 // RNA splicing // inferred from sequence or structural similarity /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement /// 0045292 // mRNA cis splicing, via spliceosome // inferred from direct assay /// 0046833 // positive regulation of RNA export from nucleus // inferred from sequence or structural similarity /// 0050434 // positive regulation of viral transcription // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005845 // mRNA cap binding complex // inferred from direct assay /// 0005846 // nuclear cap binding complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000339 // RNA cap binding // non-traceable author statement /// 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 35.40 118.35 2.56 0.04 0.06 -4.52
212846_at 212846_at AA811192 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA811192 /FEA=EST /DB_XREF=gi:2880803 /DB_XREF=est:ob72b08.s1 /CLONE=IMAGE:1336887 /UG=Hs.152629 KIAA0179 protein AA811192 ribosomal RNA processing 1B RRP1B 23076 NM_015056 0006364 // rRNA processing // inferred from electronic annotation /// 0010923 // negative regulation of phosphatase activity // inferred from direct assay 0000791 // euchromatin // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0030688 // preribosome, small subunit precursor // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 84.85 355.77 2.56 0.04 0.06 -4.52
219347_at 219347_at NM_018283 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018283.1 /DEF=Homo sapiens hypothetical protein FLJ10956 (FLJ10956), mRNA. /FEA=mRNA /GEN=FLJ10956 /PROD=hypothetical protein FLJ10956 /DB_XREF=gi:8922791 /UG=Hs.144407 hypothetical protein FLJ10956 /FL=gb:NM_018283.1 NM_018283 nudix (nucleoside diphosphate linked moiety X)-type motif 15 NUDT15 55270 NM_018283 0006184 // GTP catabolic process // inferred from direct assay /// 0006203 // dGTP catabolic process // inferred from direct assay /// 0034656 // nucleobase-containing small molecule catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0008413 // 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035539 // 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 31.12 82.79 2.56 0.04 0.06 -4.52
214443_at 214443_at NM_006505 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_006505.1 /DEF=Homo sapiens poliovirus receptor (PVR), mRNA. /FEA=CDS /GEN=PVR /PROD=poliovirus receptor /DB_XREF=gi:5729994 /UG=Hs.321018 poliovirus receptor /FL=gb:NM_006505.1 NM_006505 poliovirus receptor PVR 5817 NM_001135768 /// NM_001135769 /// NM_001135770 /// NM_006505 /// XM_005259120 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0045216 // cell-cell junction organization // traceable author statement /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0050776 // regulation of immune response // traceable author statement /// 0060370 // susceptibility to T cell mediated cytotoxicity // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from physical interaction -43.55 105.50 -2.56 0.04 0.06 -4.52
212481_s_at 212481_s_at AI214061 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI214061 /FEA=EST /DB_XREF=gi:3777662 /DB_XREF=est:ap29d10.x1 /CLONE=IMAGE:1956787 /UG=Hs.250641 tropomyosin 4 AI214061 tropomyosin 4 TPM4 7171 NM_001145160 /// NM_003290 /// XM_005260042 /// XM_006722865 0001649 // osteoblast differentiation // inferred from direct assay /// 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030049 // muscle filament sliding // traceable author statement 0001725 // stress fiber // inferred from direct assay /// 0002102 // podosome // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005862 // muscle thin filament tropomyosin // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceable author statement /// 0008307 // structural constituent of muscle // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 121.05 505.65 2.55 0.04 0.06 -4.52
201786_s_at 201786_s_at NM_001111 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001111.2 /DEF=Homo sapiens adenosine deaminase, RNA-specific (ADAR), transcript variant ADAR-a, mRNA. /FEA=mRNA /GEN=ADAR /PROD=adenosine deaminase, RNA-specific, isoformADAR-a /DB_XREF=gi:7669471 /UG=Hs.7957 adenosine deaminase, RNA-specific /FL=gb:U10439.1 gb:NM_001111.2 gb:U18121.1 NM_001111 adenosine deaminase, RNA-specific ADAR 103 NM_001025107 /// NM_001111 /// NM_001193495 /// NM_015840 /// NM_015841 /// XM_006711109 /// XM_006711110 /// XM_006711111 /// XM_006711112 /// XM_006711113 0002376 // immune system process // inferred from electronic annotation /// 0006382 // adenosine to inosine editing // inferred from direct assay /// 0006382 // adenosine to inosine editing // inferred from mutant phenotype /// 0006382 // adenosine to inosine editing // traceable author statement /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006611 // protein export from nucleus // inferred from direct assay /// 0009615 // response to virus // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016553 // base conversion or substitution editing // inferred from direct assay /// 0016556 // mRNA modification // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0035455 // response to interferon-alpha // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0044387 // negative regulation of protein kinase activity by regulation of protein phosphorylation // inferred from direct assay /// 0044387 // negative regulation of protein kinase activity by regulation of protein phosphorylation // inferred from mutant phenotype /// 0045070 // positive regulation of viral genome replication // inferred from direct assay /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060337 // type I interferon signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0044530 // supraspliceosomal complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from direct assay /// 0003726 // double-stranded RNA adenosine deaminase activity // non-traceable author statement /// 0004000 // adenosine deaminase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 52.85 396.38 2.55 0.04 0.06 -4.52
217883_at 217883_at NM_015702 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015702.1 /DEF=Homo sapiens hypothetical protein (CL25022), mRNA. /FEA=mRNA /GEN=CL25022 /PROD=hypothetical protein /DB_XREF=gi:7661547 /UG=Hs.5324 hypothetical protein /FL=gb:AF060224.1 gb:BC000932.2 gb:AF131802.1 gb:AF161510.1 gb:NM_015702.1 NM_015702 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria MMADHC 27249 NM_015702 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0009235 // cobalamin metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 68.83 757.16 2.54 0.04 0.07 -4.52
209024_s_at 209024_s_at AI472757 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI472757 /FEA=EST /DB_XREF=gi:4325802 /DB_XREF=est:ta13e05.x1 /CLONE=IMAGE:2043968 /UG=Hs.155489 NS1-associated protein 1 /FL=gb:AF037448.1 AI472757 synaptotagmin binding, cytoplasmic RNA interacting protein SYNCRIP 10492 NM_001159673 /// NM_001159674 /// NM_001159675 /// NM_001159676 /// NM_001159677 /// NM_001253771 /// NM_006372 /// XM_005248635 /// XM_005248636 /// XM_005248637 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity /// 0097452 // GAIT complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 69.93 539.01 2.54 0.04 0.07 -4.52
217550_at 217550_at AA576497 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA576497 /FEA=EST /DB_XREF=gi:2353997 /DB_XREF=est:nm76b07.s1 /CLONE=IMAGE:1074133 /UG=Hs.252497 ESTs AA576497 activating transcription factor 6 ATF6 22926 NM_007348 /// XM_006711224 /// XM_006711225 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006950 // response to stress // traceable author statement /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0006990 // positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005635 // nuclear envelope // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 27.28 49.56 2.54 0.04 0.07 -4.52
211596_s_at 211596_s_at AB050468 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB050468.1 /DEF=Homo sapiens mRNA for membrane glycoprotein LIG-1, complete cds. /FEA=mRNA /GEN=lig-1 /PROD=membrane glycoprotein LIG-1 /DB_XREF=gi:13537354 /FL=gb:AB050468.1 AB050468 leucine-rich repeats and immunoglobulin-like domains 1 LRIG1 26018 NM_015541 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -43.00 193.25 -2.54 0.04 0.07 -4.52
203103_s_at 203103_s_at NM_014502 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014502.1 /DEF=Homo sapiens nuclear matrix protein NMP200 related to splicing factor PRP19 (NMP200), mRNA. /FEA=mRNA /GEN=NMP200 /PROD=nuclear matrix protein NMP200 related tosplicing factor PRP19 /DB_XREF=gi:7657380 /UG=Hs.173980 nuclear matrix protein NMP200 related to splicing factor PRP19 /FL=gb:NM_014502.1 NM_014502 pre-mRNA processing factor 19 PRPF19 27339 NM_014502 0000209 // protein polyubiquitination // inferred from direct assay /// 0000245 // spliceosomal complex assembly // inferred from mutant phenotype /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0048026 // positive regulation of mRNA splicing, via spliceosome // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000974 // Prp19 complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005811 // lipid particle // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction 38.70 212.88 2.54 0.04 0.07 -4.52
202582_s_at 202582_s_at AF306510 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF306510.1 /DEF=Homo sapiens RANBPM mRNA, complete cds. /FEA=mRNA /PROD=RANBPM /DB_XREF=gi:13194575 /UG=Hs.279886 RAN binding protein 9 /FL=gb:AF306510.1 gb:AB008515.1 gb:NM_005493.1 AF306510 RAN binding protein 9 RANBP9 10048 NM_005493 /// XM_006714945 0006461 // protein complex assembly // traceable author statement /// 0007020 // microtubule nucleation // non-traceable author statement /// 0007411 // axon guidance // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005875 // microtubule associated complex // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction -69.23 331.09 -2.54 0.04 0.07 -4.52
200967_at 200967_at NM_000942 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000942.1 /DEF=Homo sapiens peptidylprolyl isomerase B (cyclophilin B) (PPIB), mRNA. /FEA=mRNA /GEN=PPIB /PROD=peptidylprolyl isomerase B (cyclophilin B) /DB_XREF=gi:4758949 /UG=Hs.699 peptidylprolyl isomerase B (cyclophilin B) /FL=gb:BC001125.1 gb:M60857.1 gb:M63573.1 gb:NM_000942.1 NM_000942 peptidylprolyl isomerase B (cyclophilin B) PPIB 5479 NM_000942 0000413 // protein peptidyl-prolyl isomerization // inferred from sequence or structural similarity /// 0006457 // protein folding // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from mutant phenotype /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0060348 // bone development // inferred from mutant phenotype /// 0061077 // chaperone-mediated protein folding // inferred from direct assay /// 0061077 // chaperone-mediated protein folding // inferred from mutant phenotype /// 1901873 // regulation of post-translational protein modification // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // non-traceable author statement /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0032991 // macromolecular complex // inferred from sequence or structural similarity /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from sequence or structural similarity /// 0016853 // isomerase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from sequence or structural similarity /// 0042277 // peptide binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement 144.82 952.19 2.54 0.04 0.07 -4.52
222175_s_at 222175_s_at AK000003 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000003.1 /DEF=Homo sapiens mRNA for FLJ00003 protein, partial cds. /FEA=mRNA /GEN=FLJ00003 /PROD=FLJ00003 protein /DB_XREF=gi:7209306 /UG=Hs.8657 TIG-1 AK000003 mediator complex subunit 15 MED15 51586 NM_001003891 /// NM_001293234 /// NM_001293235 /// NM_001293236 /// NM_001293237 /// NM_015889 /// XM_005261632 /// XM_006724261 /// XM_006724262 /// XM_006724263 /// XM_006724264 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0019827 // stem cell maintenance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016592 // mediator complex // inferred from electronic annotation 0001104 // RNA polymerase II transcription cofactor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -80.40 217.50 -2.54 0.04 0.07 -4.52
210822_at 210822_at U72513 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U72513.1 /DEF=Human RPL13-2 pseudogene mRNA, complete cds. /FEA=mRNA /PROD=RPL13-2 /DB_XREF=gi:1673516 /UG=Hs.159486 Human RPL13-2 pseudogene mRNA, complete cds /FL=gb:U72513.1 U72513 leucine rich repeat containing 23 /// ribosomal protein L13 pseudogene 5 LRRC23 /// RPL13P5 10233 /// 283345 NM_001135217 /// NM_006992 /// NM_201650 /// NR_002803 -61.68 40.99 -2.54 0.04 0.07 -4.52
218170_at 218170_at NM_016048 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016048.1 /DEF=Homo sapiens CGI-111 protein (LOC51015), mRNA. /FEA=mRNA /GEN=LOC51015 /PROD=CGI-111 protein /DB_XREF=gi:7705613 /UG=Hs.11085 CGI-111 protein /FL=gb:AF151869.1 gb:NM_016048.1 NM_016048 isochorismatase domain containing 1 ISOC1 51015 NM_016048 0008152 // metabolic process // inferred from electronic annotation 0005777 // peroxisome // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation 27.15 168.25 2.54 0.04 0.07 -4.52
204102_s_at 204102_s_at NM_001961 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001961.1 /DEF=Homo sapiens eukaryotic translation elongation factor 2 (EEF2), mRNA. /FEA=mRNA /GEN=EEF2 /PROD=eukaryotic translation elongation factor 2 /DB_XREF=gi:4503482 /UG=Hs.75309 eukaryotic translation elongation factor 2 /FL=gb:NM_001961.1 NM_001961 eukaryotic translation elongation factor 2 EEF2 1938 NM_001961 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from genetic interaction /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from genetic interaction 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005844 // polysome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008494 // translation activator activity // inferred from genetic interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -466.20 2227.35 -2.53 0.04 0.07 -4.52
200891_s_at 200891_s_at NM_003144 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003144.2 /DEF=Homo sapiens signal sequence receptor, alpha (translocon-associated protein alpha) (SSR1), mRNA. /FEA=mRNA /GEN=SSR1 /PROD=signal sequence receptor, alpha /DB_XREF=gi:6552340 /UG=Hs.250773 signal sequence receptor, alpha (translocon-associated protein alpha) /FL=gb:AF156965.1 gb:NM_003144.2 NM_003144 signal sequence receptor, alpha SSR1 6745 NM_001292008 /// NM_003144 /// NR_120448 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 333.35 860.38 2.53 0.04 0.07 -4.52
215963_x_at 215963_x_at Z98200 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z98200 /DEF=Human DNA sequence from clone RP1-111B22 on chromosome 6q16-21 Contains a novel pseudogene, a pseudogene similar to ribosomal protein L3, ESTs, STSs, GSSs and CpG Islands /FEA=CDS_1 /DB_XREF=gi:6002294 /UG=Hs.296559 Human DNA sequence from clone RP1-111B22 on chromosome 6q16-21 Contains a novel pseudogene, a pseudogene similar to ribosomal protein L3, ESTs, STSs, GSSs and CpG Islands Z98200 ribosomal protein L3 RPL3 6122 NM_000967 /// NM_001033853 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -603.22 3381.89 -2.53 0.04 0.07 -4.52
218056_at 218056_at NM_016561 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016561.1 /DEF=Homo sapiens apoptosis regulator (LOC51283), mRNA. /FEA=mRNA /GEN=LOC51283 /PROD=apoptosis regulator /DB_XREF=gi:7706090 /UG=Hs.168159 apoptosis regulator /FL=gb:BC003054.1 gb:AF173003.1 gb:NM_016561.1 NM_016561 bifunctional apoptosis regulator BFAR 51283 NM_016561 /// XM_005255350 /// XM_006725196 0006915 // apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -31.40 223.12 -2.53 0.04 0.07 -4.52
217731_s_at 217731_s_at NM_021999 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021999.1 /DEF=Homo sapiens integral membrane protein 2B (ITM2B), mRNA. /FEA=mRNA /GEN=ITM2B /PROD=integral membrane protein 2B /DB_XREF=gi:11527401 /UG=Hs.239625 integral membrane protein 2B /FL=gb:NM_021999.1 gb:AF136973.1 gb:BC000554.1 gb:AF092128.1 gb:AF152462.1 gb:AF246221.1 NM_021999 integral membrane protein 2B ITM2B 9445 NM_021999 0006915 // apoptotic process // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // inferred from direct assay /// 0031301 // integral component of organelle membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001540 // beta-amyloid binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation 179.22 313.46 2.53 0.04 0.07 -4.52
203096_s_at 203096_s_at BF439282 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF439282 /FEA=EST /DB_XREF=gi:11451799 /DB_XREF=est:nab62c11.x1 /CLONE=IMAGE:3272444 /UG=Hs.154545 PDZ domain containing guanine nucleotide exchange factor(GEF)1 /FL=gb:AB002311.1 gb:NM_014247.1 BF439282 Rap guanine nucleotide exchange factor (GEF) 2 RAPGEF2 9693 NM_014247 /// XM_005263358 /// XM_005263359 /// XM_005263360 /// XM_005263361 /// XM_006714420 /// XM_006714421 /// XM_006714422 0000165 // MAPK cascade // non-traceable author statement /// 0001568 // blood vessel development // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from sequence or structural similarity /// 0019933 // cAMP-mediated signaling // inferred from direct assay /// 0019933 // cAMP-mediated signaling // non-traceable author statement /// 0021591 // ventricular system development // inferred from sequence or structural similarity /// 0021884 // forebrain neuron development // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from direct assay /// 0031547 // brain-derived neurotrophic factor receptor signaling pathway // inferred from sequence or structural similarity /// 0032092 // positive regulation of protein binding // inferred from sequence or structural similarity /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0032486 // Rap protein signal transduction // inferred from mutant phenotype /// 0032854 // positive regulation of Rap GTPase activity // inferred from direct assay /// 0032854 // positive regulation of Rap GTPase activity // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // traceable author statement /// 0038180 // nerve growth factor signaling pathway // inferred from sequence or structural similarity /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0048022 // negative regulation of melanin biosynthetic process // inferred from sequence or structural similarity /// 0048167 // regulation of synaptic plasticity // inferred from sequence or structural similarity /// 0050774 // negative regulation of dendrite morphogenesis // inferred from direct assay /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0061028 // establishment of endothelial barrier // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071320 // cellular response to cAMP // inferred from direct assay /// 0071321 // cellular response to cGMP // inferred from direct assay /// 0071880 // adenylate cyclase-activating adrenergic receptor signaling pathway // inferred from direct assay /// 1901888 // regulation of cell junction assembly // inferred from mutant phenotype /// 1990090 // cellular response to nerve growth factor stimulus // inferred from sequence or structural similarity /// 2000481 // positive regulation of cAMP-dependent protein kinase activity // inferred from direct assay /// 2000670 // positive regulation of dendritic cell apoptotic process // inferred from direct assay /// 2001214 // positive regulation of vasculogenesis // inferred from sequence or structural similarity /// 2001224 // positive regulation of neuron migration // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004871 // signal transducer activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005088 // Ras guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017034 // Rap guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0017034 // Rap guanyl-nucleotide exchange factor activity // inferred from mutant phenotype /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019992 // diacylglycerol binding // non-traceable author statement /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from direct assay /// 0031697 // beta-1 adrenergic receptor binding // inferred from direct assay /// 0046582 // Rap GTPase activator activity // inferred from direct assay /// 0050699 // WW domain binding // inferred from direct assay -45.80 122.07 -2.52 0.04 0.07 -4.52
209053_s_at 209053_s_at BE793789 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE793789 /FEA=EST /DB_XREF=gi:10214987 /DB_XREF=est:601589946F1 /CLONE=IMAGE:3944195 /UG=Hs.110457 Wolf-Hirschhorn syndrome candidate 1 /FL=gb:AF083389.1 BE793789 Wolf-Hirschhorn syndrome candidate 1 WHSC1 7468 NM_001042424 /// NM_007331 /// NM_014919 /// NM_133330 /// NM_133331 /// NM_133332 /// NM_133333 /// NM_133334 /// NM_133335 /// NM_133336 /// XM_005248001 /// XM_005248002 /// XM_005248005 /// XM_006713914 /// XM_006713915 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0003149 // membranous septum morphogenesis // inferred from electronic annotation /// 0003289 // atrial septum primum morphogenesis // inferred from electronic annotation /// 0003290 // atrial septum secundum morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0034968 // histone lysine methylation // inferred from electronic annotation /// 0060348 // bone development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -45.93 144.24 -2.52 0.04 0.07 -4.52
215073_s_at 215073_s_at AL554245 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL554245 /FEA=EST /DB_XREF=gi:12894837 /DB_XREF=est:AL554245 /CLONE=CS0DI082YA02 (5 prime) /UG=Hs.288869 nuclear receptor subfamily 2, group F, member 2 AL554245 nuclear receptor subfamily 2, group F, member 2 NR2F2 7026 NM_001145155 /// NM_001145156 /// NM_001145157 /// NM_021005 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001893 // maternal placenta development // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006629 // lipid metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0009956 // radial pattern formation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010596 // negative regulation of endothelial cell migration // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0021796 // cerebral cortex regionalization // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // inferred from direct assay /// 0030522 // intracellular receptor signaling pathway // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0001972 // retinoic acid binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred by curator /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044323 // retinoic acid-responsive element binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 45.95 154.20 2.52 0.04 0.07 -4.52
201446_s_at 201446_s_at BF692742 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF692742 /FEA=EST /DB_XREF=gi:11978150 /DB_XREF=est:602079823F1 /CLONE=IMAGE:4244524 /UG=Hs.239489 TIA1 cytotoxic granule-associated RNA-binding protein /FL=gb:NM_022037.1 gb:M77142.1 BF692742 TIA1 cytotoxic granule-associated RNA binding protein TIA1 7072 NM_022037 /// NM_022173 /// XM_005264524 /// XM_005264525 /// XM_005264526 /// XM_005264527 /// XM_005264528 /// XM_005264530 /// XM_005264531 /// XM_005264532 /// XM_005264533 /// XR_244953 /// XR_244954 /// XR_244955 0006915 // apoptotic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0042036 // negative regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0048024 // regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0097165 // nuclear stress granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // traceable author statement /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -56.80 246.82 -2.52 0.04 0.07 -4.52
202596_at 202596_at BC000436 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000436.1 /DEF=Homo sapiens, endosulfine alpha, clone MGC:8394, mRNA, complete cds. /FEA=mRNA /PROD=endosulfine alpha /DB_XREF=gi:12653334 /UG=Hs.111680 endosulfine alpha /FL=gb:BC000436.1 gb:BC004461.1 gb:NM_004436.1 gb:AF157509.1 BC000436 endosulfine alpha ENSA 2029 NM_004436 /// NM_207042 /// NM_207043 /// NM_207044 /// NM_207045 /// NM_207046 /// NM_207047 /// NM_207168 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000278 // mitotic cell cycle // traceable author statement /// 0006810 // transport // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from sequence or structural similarity /// 0007584 // response to nutrient // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // inferred from sequence or structural similarity /// 0050796 // regulation of insulin secretion // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0008200 // ion channel inhibitor activity // traceable author statement /// 0008601 // protein phosphatase type 2A regulator activity // inferred from sequence or structural similarity /// 0019212 // phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0019870 // potassium channel inhibitor activity // inferred from direct assay /// 0051721 // protein phosphatase 2A binding // inferred from sequence or structural similarity 81.57 368.09 2.52 0.04 0.07 -4.52
201430_s_at 201430_s_at W72516 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W72516 /FEA=EST /DB_XREF=gi:1382173 /DB_XREF=est:zd64g05.s1 /CLONE=IMAGE:345464 /UG=Hs.74566 dihydropyrimidinase-like 3 /FL=gb:D78014.1 gb:NM_001387.1 W72516 dihydropyrimidinase-like 3 DPYSL3 1809 NM_001197294 /// NM_001387 0006208 // pyrimidine nucleobase catabolic process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from sequence or structural similarity /// 0010977 // negative regulation of neuron projection development // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from sequence or structural similarity /// 0051017 // actin filament bundle assembly // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051491 // positive regulation of filopodium assembly // inferred from sequence or structural similarity /// 0051764 // actin crosslink formation // inferred from sequence or structural similarity /// 0071345 // cellular response to cytokine stimulus // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0031941 // filamentous actin // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation /// 0044297 // cell body // inferred from sequence or structural similarity /// 0070382 // exocytic vesicle // inferred from sequence or structural similarity 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016812 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from sequence or structural similarity /// 0035374 // chondroitin sulfate binding // inferred from sequence or structural similarity /// 0051219 // phosphoprotein binding // inferred from electronic annotation -53.70 217.75 -2.52 0.04 0.07 -4.52
208729_x_at 208729_x_at D83043 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D83043.1 /DEF=Human HLA-B mRNA, allele A*2711, complete cds. /FEA=mRNA /GEN=HLA-B /DB_XREF=gi:1871135 /UG=Hs.77961 major histocompatibility complex, class I, B /FL=gb:U36492.1 gb:U35431.1 gb:L37881.1 gb:U31971.1 gb:L42345.1 gb:U50710.1 gb:L41925.1 gb:L41214.1 gb:U27608.1 gb:U35734.1 gb:U70528.1 gb:U70529.1 gb:U80945.1 gb:U64801.1 gb:U09864.1 gb:M77776.1 gb:M77775.1 gb:L04696.1 gb:D83043.1 gb:M12678.1 gb:L09736.1 gb:L09735.1 gb:M75138.1 gb:M84381.1 gb:M84382.1 gb:M84383.1 gb:M84384.1 gb:M84385.1 gb:M32318.1 gb:M32319.1 gb:M32320.1 gb:M81798.1 gb:L04695.1 gb:M84694.1 gb:U30936.1 gb:AF016641.1 gb:U36392.1 gb:AB008102.1 gb:U75533.1 gb:U57966.1 gb:AF026218.1 gb:L07743.1 gb:U01848.1 gb:U38800.1 gb:U40498.1 gb:U03027.1 gb:U03859.1 gb:L22028.1 gb:U04243.1 gb:U06862.1 gb:L32862.1 gb:L15005.1 gb:L22027.1 gb:L19923.1 gb:L11666.1 gb:L11604.1 gb:L11603.1 gb:L19937.1 gb:L33923.1 gb:AF170577.1 gb:M28205.1 gb:U17107.1 gb:U14943.1 gb:AF130734.1 gb:D25275.1 gb:D50290.1 gb:D50291.1 gb:D50299.1 gb:D50300.1 gb:L38504.1 gb:L36 D83043 major histocompatibility complex, class I, B HLA-B 3106 NM_005514 /// XM_005249043 /// XM_005275100 /// XM_005275238 /// XM_005275376 /// XM_005275377 /// XM_005275535 /// XM_006725904 /// XM_006725905 /// XR_246962 /// XR_427830 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002486 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent // inferred from direct assay /// 0002667 // regulation of T cell anergy // inferred from mutant phenotype /// 0006952 // defense response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016045 // detection of bacterium // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032655 // regulation of interleukin-12 production // inferred from mutant phenotype /// 0032675 // regulation of interleukin-6 production // inferred from mutant phenotype /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 2001198 // regulation of dendritic cell differentiation // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0046977 // TAP binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction -67.18 254.91 -2.51 0.04 0.07 -4.52
202318_s_at 202318_s_at AF306508 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF306508.1 /DEF=Homo sapiens SUMO-1 specific protease FKSG6 mRNA, complete cds. /FEA=mRNA /PROD=SUMO-1 specific protease FKSG6 /DB_XREF=gi:11096243 /UG=Hs.27197 SUMO-1-specific protease /FL=gb:AF307849.1 gb:AF306508.1 gb:AF196304.1 gb:NM_015571.1 AF306508 SUMO1/sentrin specific peptidase 6 SENP6 26054 NM_001100409 /// NM_015571 /// XM_006715457 /// XR_241847 0006508 // proteolysis // inferred from electronic annotation /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0016926 // protein desumoylation // inferred from mutant phenotype /// 0070646 // protein modification by small protein removal // inferred from direct assay /// 0090169 // regulation of spindle assembly // inferred from mutant phenotype /// 0090234 // regulation of kinetochore assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016929 // SUMO-specific protease activity // inferred from mutant phenotype -30.78 150.81 -2.51 0.04 0.07 -4.52
205690_s_at 205690_s_at NM_003910 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003910.1 /DEF=Homo sapiens maternal G10 transcript (G10), mRNA. /FEA=mRNA /GEN=G10 /PROD=maternal G10 transcript /DB_XREF=gi:4503836 /UG=Hs.330310 maternal G10 transcript /FL=gb:NM_003910.1 gb:U11861.1 NM_003910 BUD31 homolog (S. cerevisiae) BUD31 8896 NM_003910 /// XM_005250670 /// XM_005250671 /// XM_005250672 /// XM_005250673 /// XM_005250674 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement -45.10 266.45 -2.51 0.04 0.07 -4.52
212673_at 212673_at D42084 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D42084.1 /DEF=Human mRNA for KIAA0094 gene, partial cds. /FEA=mRNA /GEN=KIAA0094 /DB_XREF=gi:577314 /UG=Hs.82007 KIAA0094 protein D42084 methionyl aminopeptidase 1 METAP1 23173 NM_015143 /// XM_005262867 /// XM_005262868 0006417 // regulation of translation // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0018206 // peptidyl-methionine modification // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0031365 // N-terminal protein amino acid modification // traceable author statement /// 0070084 // protein initiator methionine removal // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0022626 // cytosolic ribosome // inferred from electronic annotation 0004177 // aminopeptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070006 // metalloaminopeptidase activity // inferred from electronic annotation 39.12 261.06 2.51 0.04 0.07 -4.52
35436_at 35436_at L06147 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. L06147:Human (clone SY11) golgin-95 mRNA, complete cds /cds=(18,1880) /gb=L06147 /gi=306781 /ug=Hs.169055 /len=2067 L06147 golgin A2 GOLGA2 2801 NM_004486 /// XM_005251930 /// XM_005251931 /// XM_005251932 0000278 // mitotic cell cycle // traceable author statement /// 0007021 // tubulin complex assembly // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // inferred from electronic annotation /// 0051645 // Golgi localization // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from electronic annotation 40.00 76.50 2.51 0.04 0.07 -4.52
210879_s_at 210879_s_at AF334812 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF334812.1 /DEF=Homo sapiens Rab11 interacting protein Rip11a mRNA, complete cds. /FEA=mRNA /PROD=Rab11 interacting protein Rip11a /DB_XREF=gi:13377896 /UG=Hs.24557 KIAA0857 protein /FL=gb:AF334812.1 AF334812 RAB11 family interacting protein 5 (class I) RAB11FIP5 26056 NM_015470 /// XM_005264251 /// XM_005264252 /// XM_005264253 /// XM_006711985 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0035773 // insulin secretion involved in cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0045055 // regulated secretory pathway // inferred from sequence or structural similarity /// 0071468 // cellular response to acidity // inferred from direct assay /// 2000008 // regulation of protein localization to cell surface // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from sequence or structural similarity /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0055037 // recycling endosome // inferred from sequence or structural similarity /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0043015 // gamma-tubulin binding // inferred from direct assay 25.90 116.67 2.51 0.04 0.07 -4.52
213244_at 213244_at AI207792 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI207792 /FEA=EST /DB_XREF=gi:3769734 /DB_XREF=est:ao89d03.x1 /CLONE=IMAGE:1953029 /UG=Hs.306019 ESTs, Weakly similar to ALU7_HUMAN ALU SUBFAMILY SQ SEQUENCE CONTAMINATION WARNING ENTRY H.sapiens AI207792 secretory carrier membrane protein 4 SCAMP4 113178 NM_079834 0006810 // transport // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 26.65 74.65 2.51 0.04 0.07 -4.52
218011_at 218011_at NM_024292 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024292.1 /DEF=Homo sapiens ubiquitin-like 5 (UBL5), mRNA. /FEA=mRNA /GEN=UBL5 /PROD=ubiquitin-like 5 /DB_XREF=gi:13236509 /UG=Hs.109701 ubiquitin-like 5 /FL=gb:AF313915.1 gb:NM_024292.1 NM_024292 ubiquitin-like 5 UBL5 59286 NM_001048241 /// NM_024292 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 98.98 335.36 2.51 0.04 0.07 -4.52
201960_s_at 201960_s_at NM_015057 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015057.1 /DEF=Homo sapiens KIAA0916 protein (KIAA0916), mRNA. /FEA=mRNA /GEN=KIAA0916 /PROD=KIAA0916 protein /DB_XREF=gi:7662379 /UG=Hs.151411 KIAA0916 protein /FL=gb:AF075587.1 gb:AF083244.1 gb:NM_015057.1 NM_015057 MYC binding protein 2, E3 ubiquitin protein ligase MYCBP2 23077 NM_015057 /// XM_005266299 /// XM_005266300 /// XM_006719779 /// XM_006719780 /// XM_006719781 /// XM_006719782 /// XM_006719783 /// XM_006719784 /// XM_006719785 /// XM_006719786 /// XM_006719787 /// XM_006719788 /// XM_006719789 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008045 // motor neuron axon guidance // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0021785 // branchiomotor neuron axon guidance // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0048667 // cell morphogenesis involved in neuron differentiation // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -73.82 246.76 -2.51 0.04 0.07 -4.52
200612_s_at 200612_s_at NM_001282 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001282.1 /DEF=Homo sapiens adaptor-related protein complex 2, beta 1 subunit (AP2B1), mRNA. /FEA=mRNA /GEN=AP2B1 /PROD=adaptor-related protein complex 2, beta 1subunit /DB_XREF=gi:4557468 /UG=Hs.74626 adaptor-related protein complex 2, beta 1 subunit /FL=gb:M34175.1 gb:NM_001282.1 NM_001282 adaptor-related protein complex 2, beta 1 subunit AP2B1 163 NM_001030006 /// NM_001282 /// XM_005257937 /// XM_005257938 /// XM_005257941 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // traceable author statement 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation 191.70 296.50 2.51 0.04 0.07 -4.52
218069_at 218069_at NM_024096 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024096.1 /DEF=Homo sapiens hypothetical protein MGC5627 (MGC5627), mRNA. /FEA=mRNA /GEN=MGC5627 /PROD=hypothetical protein MGC5627 /DB_XREF=gi:13129099 /UG=Hs.237971 hypothetical protein MGC5627 /FL=gb:BC001344.1 gb:NM_024096.1 gb:AF212242.1 NM_024096 dCTP pyrophosphatase 1 DCTPP1 79077 NM_024096 0009143 // nucleoside triphosphate catabolic process // inferred from sequence or structural similarity /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0016462 // pyrophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032556 // pyrimidine deoxyribonucleotide binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047429 // nucleoside-triphosphate diphosphatase activity // inferred from sequence or structural similarity /// 0047840 // dCTP diphosphatase activity // inferred from electronic annotation 47.02 189.04 2.50 0.04 0.07 -4.52
214280_x_at 214280_x_at X79536 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X79536.1 /DEF=H.sapiens mRNA for hnRNPcore protein A1. /FEA=mRNA /PROD=hnRNPcore protein A1 /DB_XREF=gi:496897 /UG=Hs.249495 heterogeneous nuclear ribonucleoprotein A1 X79536 heterogeneous nuclear ribonucleoprotein A1 HNRNPA1 3178 NM_002136 /// NM_031157 /// XM_005268826 /// XR_245923 /// XR_245924 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006405 // RNA export from nucleus // inferred by curator /// 0006810 // transport // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051168 // nuclear export // inferred from direct assay /// 0051170 // nuclear import // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // traceable author statement /// 0003727 // single-stranded RNA binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -201.35 516.00 -2.50 0.04 0.07 -4.52
40562_at 40562_at AF011499 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. M69013:Human guanine nucleotide-binding regulatory protein (G-y-alpha) mRNA, complete cds /cds=(186,1265) /gb=M69013 /gi=183690 /ug=Hs.1686 /len=1540 AF011499 guanine nucleotide binding protein (G protein), alpha 11 (Gq class) GNA11 2767 NM_002067 0001501 // skeletal system development // inferred from electronic annotation /// 0001508 // action potential // not recorded /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0045634 // regulation of melanocyte differentiation // inferred from electronic annotation /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0060158 // phospholipase C-activating dopamine receptor signaling pathway // not recorded 0005737 // cytoplasm // traceable author statement /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001664 // G-protein coupled receptor binding // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031826 // type 2A serotonin receptor binding // /// 0046872 // metal ion binding // inferred from electronic annotation 36.20 141.95 2.50 0.04 0.07 -4.52
201570_at 201570_at NM_015380 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015380.1 /DEF=Homo sapiens CGI-51 protein (CGI-51), mRNA. /FEA=mRNA /GEN=CGI-51 /PROD=CGI-51 protein /DB_XREF=gi:7661541 /UG=Hs.4877 CGI-51 protein /FL=gb:AF151809.1 gb:NM_015380.1 NM_015380 SAMM50 sorting and assembly machinery component SAMM50 25813 NM_015380 0006626 // protein targeting to mitochondrion // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045040 // protein import into mitochondrial outer membrane // inferred from direct assay 0001401 // mitochondrial sorting and assembly machinery complex // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0019867 // outer membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 54.15 229.80 2.50 0.04 0.07 -4.52
205463_s_at 205463_s_at NM_002607 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002607.1 /DEF=Homo sapiens platelet-derived growth factor alpha polypeptide (PDGFA), mRNA. /FEA=mRNA /GEN=PDGFA /PROD=platelet-derived growth factor alphapolypeptide /DB_XREF=gi:4505678 /UG=Hs.37040 platelet-derived growth factor alpha polypeptide /FL=gb:NM_002607.1 NM_002607 platelet-derived growth factor alpha polypeptide PDGFA 5154 NM_002607 /// NM_033023 /// XM_005249770 /// XM_006715733 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001775 // cell activation // traceable author statement /// 0001942 // hair follicle development // inferred from sequence or structural similarity /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0002576 // platelet degranulation // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009611 // response to wounding // inferred from direct assay /// 0009790 // embryo development // traceable author statement /// 0009887 // organ morphogenesis // inferred from sequence or structural similarity /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from electronic annotation /// 0010512 // negative regulation of phosphatidylinositol biosynthetic process // inferred from direct assay /// 0010544 // negative regulation of platelet activation // inferred from direct assay /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0014910 // regulation of smooth muscle cell migration // inferred from direct assay /// 0030031 // cell projection assembly // inferred from sequence or structural similarity /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // traceable author statement /// 0035793 // positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042060 // wound healing // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from mutant phenotype /// 0043588 // skin development // inferred from sequence or structural similarity /// 0045087 // innate immune response // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0048286 // lung alveolus development // inferred from sequence or structural similarity /// 0048839 // inner ear development // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0050919 // negative chemotaxis // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0060683 // regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling // inferred from sequence or structural similarity /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0072124 // regulation of glomerular mesangial cell proliferation // inferred from direct assay /// 2000278 // regulation of DNA biosynthetic process // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005902 // microvillus // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement 0005161 // platelet-derived growth factor receptor binding // inferred from direct assay /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0008083 // growth factor activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0048407 // platelet-derived growth factor binding // inferred from physical interaction 28.90 117.35 2.50 0.04 0.07 -4.52
202475_at 202475_at NM_006326 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006326.1 /DEF=Homo sapiens seven transmembrane domain protein (NIFIE14), mRNA. /FEA=mRNA /GEN=NIFIE14 /PROD=seven transmembrane domain protein /DB_XREF=gi:5453781 /UG=Hs.9234 seven transmembrane domain protein /FL=gb:BC001118.1 gb:NM_006326.1 NM_006326 transmembrane protein 147 TMEM147 10430 NM_001242597 /// NM_001242598 /// NM_032635 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 41.07 326.84 2.50 0.04 0.07 -4.52
48580_at 48580_at U55777 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U55777:HSU55777 Homo sapiens cDNA /clone=37698 /gb=U55777 /gi=1354513 /ug=Hs.180933 /len=1593 U55777 CXXC finger protein 1 CXXC1 30827 NM_001101654 /// NM_014593 /// XM_006722446 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051568 // histone H3-K4 methylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0035097 // histone methyltransferase complex // inferred from direct assay /// 0048188 // Set1C/COMPASS complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from direct assay /// 0045322 // unmethylated CpG binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 66.90 204.80 2.50 0.04 0.07 -4.52
212191_x_at 212191_x_at AW574664 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW574664 /FEA=EST /DB_XREF=gi:7246203 /DB_XREF=est:UI-HF-BL0-abw-d-10-0-UI.s1 /CLONE=IMAGE:3057859 /UG=Hs.180842 ribosomal protein L13 AW574664 ribosomal protein L13 /// small nucleolar RNA, C/D box 68 RPL13 /// SNORD68 6137 /// 606500 NM_000977 /// NM_001243130 /// NM_001243131 /// NM_033251 /// NR_002450 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022626 // cytosolic ribosome // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -513.20 1938.90 -2.50 0.04 0.07 -4.52
212456_at 212456_at AB014564 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB014564.1 /DEF=Homo sapiens mRNA for KIAA0664 protein, partial cds. /FEA=mRNA /GEN=KIAA0664 /PROD=KIAA0664 protein /DB_XREF=gi:3327141 /UG=Hs.22616 KIAA0664 protein AB014564 clustered mitochondria (cluA/CLU1) homolog CLUH 23277 NM_015229 /// XM_005256565 /// XM_005256567 /// XM_005256568 /// XM_006721491 /// XM_006721492 0007005 // mitochondrion organization // inferred from electronic annotation /// 0048312 // intracellular distribution of mitochondria // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 39.83 94.64 2.50 0.04 0.07 -4.52
200934_at 200934_at NM_003472 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003472.1 /DEF=Homo sapiens DEK oncogene (DNA binding) (DEK), mRNA. /FEA=mRNA /GEN=DEK /PROD=DEK oncogene (DNA binding) /DB_XREF=gi:4503248 /UG=Hs.110713 DEK oncogene (DNA binding) /FL=gb:NM_003472.1 NM_003472 DEK proto-oncogene DEK 7913 NM_001134709 /// NM_003472 /// XM_005249391 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019079 // viral genome replication // traceable author statement /// 2000779 // regulation of double-strand break repair // inferred from mutant phenotype /// 2001032 // regulation of double-strand break repair via nonhomologous end joining // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -126.10 448.93 -2.50 0.04 0.07 -4.52
206405_x_at 206405_x_at NM_004505 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004505.1 /DEF=Homo sapiens ubiquitin specific protease 6 (Tre-2 oncogene) (USP6), mRNA. /FEA=mRNA /GEN=USP6 /PROD=ubiquitin specific protease 6 /DB_XREF=gi:4758563 /UG=Hs.111065 ubiquitin specific protease 6 (Tre-2 oncogene) /FL=gb:NM_004505.1 NM_004505 ubiquitin specific peptidase 32 /// ubiquitin specific peptidase 6 USP32 /// USP6 9098 /// 84669 NM_004505 /// NM_005152 /// NM_032582 /// XM_005256845 0006464 // cellular protein modification process // non-traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // traceable author statement /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0060627 // regulation of vesicle-mediated transport // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // traceable author statement /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay 0003676 // nucleic acid binding // traceable author statement /// 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 45.68 89.11 2.50 0.04 0.07 -4.52
203320_at 203320_at NM_005475 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005475.1 /DEF=Homo sapiens lymphocyte adaptor protein (LNK), mRNA. /FEA=mRNA /GEN=LNK /PROD=lymphocyte adaptor protein /DB_XREF=gi:4885454 /UG=Hs.13131 lymphocyte adaptor protein /FL=gb:AF055581.1 gb:NM_005475.1 NM_005475 SH2B adaptor protein 3 SH2B3 10019 NM_001291424 /// NM_005475 /// XM_005253818 /// XM_005253819 /// XM_006719180 0007596 // blood coagulation // traceable author statement /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042301 // phosphate ion binding // inferred from electronic annotation 66.15 626.85 2.49 0.04 0.07 -4.52
203081_at 203081_at NM_020248 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020248.1 /DEF=Homo sapiens beta-catenin-interacting protein ICAT (LOC56998), mRNA. /FEA=mRNA /GEN=LOC56998 /PROD=beta-catenin-interacting protein ICAT /DB_XREF=gi:9910389 /UG=Hs.99816 beta-catenin-interacting protein ICAT /FL=gb:AB021262.1 gb:NM_020248.1 NM_020248 catenin, beta interacting protein 1 CTNNBIP1 56998 NM_001012329 /// NM_020248 /// XM_006710779 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0002528 // regulation of vascular permeability involved in acute inflammatory response // inferred from mutant phenotype /// 0009952 // anterior/posterior pattern specification // not recorded /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // not recorded /// 0031333 // negative regulation of protein complex assembly // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0045657 // positive regulation of monocyte differentiation // inferred from mutant phenotype /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0060633 // negative regulation of transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0072201 // negative regulation of mesenchymal cell proliferation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0030877 // beta-catenin destruction complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0070016 // armadillo repeat domain binding // inferred from physical interaction 31.60 38.98 2.49 0.04 0.07 -4.52
202655_at 202655_at NM_006010 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006010.1 /DEF=Homo sapiens arginine-rich, mutated in early stage tumors (ARMET), mRNA. /FEA=mRNA /GEN=ARMET /PROD=arginine-rich protein /DB_XREF=gi:5174392 /UG=Hs.75412 arginine-rich, mutated in early stage tumors /FL=gb:M83751.1 gb:NM_006010.1 NM_006010 mesencephalic astrocyte-derived neurotrophic factor MANF 7873 NM_006010 0002014 // vasoconstriction of artery involved in ischemic response to lowering of systemic arterial blood pressure // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 46.80 417.35 2.49 0.04 0.07 -4.52
218213_s_at 218213_s_at NM_014206 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014206.1 /DEF=Homo sapiens chromosome 11 open reading frame 10 (C11orf10), mRNA. /FEA=mRNA /GEN=C11orf10 /PROD=chromosome 11 open reading frame 10 /DB_XREF=gi:7656933 /UG=Hs.90918 chromosome 11 open reading frame 10 /FL=gb:BC002750.1 gb:AF070661.1 gb:AF086763.1 gb:NM_014206.1 NM_014206 transmembrane protein 258 TMEM258 746 NM_014206 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation -145.07 1174.54 -2.49 0.04 0.07 -4.52
210191_s_at 210191_s_at BC002447 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002447.1 /DEF=Homo sapiens, Similar to putative homeodomain transcription factor, clone MGC:1307, mRNA, complete cds. /FEA=mRNA /PROD=Similar to putative homeodomain transcriptionfactor /DB_XREF=gi:12803264 /UG=Hs.123637 putative homeodomain transcription factor /FL=gb:BC002447.1 BC002447 putative homeodomain transcription factor 1 PHTF1 10745 NM_006608 /// XM_005270383 /// XM_005270384 /// XM_005270385 /// XM_005270387 /// XM_006710296 /// XM_006710297 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement 52.45 123.95 2.49 0.04 0.07 -4.52
200038_s_at 200038_s_at NM_000985 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000985.1 /DEF=Homo sapiens ribosomal protein L17 (RPL17), mRNA. /FEA=mRNA /GEN=RPL17 /PROD=ribosomal protein L17 /DB_XREF=gi:4506616 /UG=Hs.82202 ribosomal protein L17 /FL=gb:BC000502.1 gb:NM_000985.1 NM_000985 chromosome 18 open reading frame 32 /// ribosomal protein L17 /// RPL17-C18orf32 readthrough /// small nucleolar RNA, C/D box 58A /// small nucleolar RNA, C/D box 58B /// small nucleolar RNA, C/D box 58C C18orf32 /// RPL17 /// RPL17-C18orf32 /// SNORD58A /// SNORD58B /// SNORD58C 6139 /// 26790 /// 26791 /// 497661 /// 100124516 /// 100526842 NM_000985 /// NM_001035005 /// NM_001035006 /// NM_001199340 /// NM_001199341 /// NM_001199342 /// NM_001199343 /// NM_001199344 /// NM_001199345 /// NM_001199346 /// NM_001199355 /// NM_001199356 /// NR_002571 /// NR_002572 /// NR_003701 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007165 // signal transduction // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0044822 // poly(A) RNA binding // inferred from direct assay -401.13 3014.91 -2.49 0.04 0.07 -4.52
202858_at 202858_at NM_006758 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006758.1 /DEF=Homo sapiens U2(RNU2) small nuclear RNA auxillary factor 1 (non-standard symbol) (U2AF1), mRNA. /FEA=mRNA /GEN=U2AF1 /PROD=U2 small nuclear RNA auxillary factor 1 /DB_XREF=gi:5803206 /UG=Hs.59271 U2(RNU2) small nuclear RNA auxillary factor 1 (non-standard symbol) /FL=gb:BC001177.1 gb:BC001923.1 gb:M96982.1 gb:NM_006758.1 NM_006758 U2 small nuclear RNA auxiliary factor 1 U2AF1 7307 NM_001025203 /// NM_001025204 /// NM_006758 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0015030 // Cajal body // traceable author statement /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050733 // RS domain binding // inferred from electronic annotation -328.05 908.40 -2.49 0.04 0.07 -4.52
208753_s_at 208753_s_at BC002387 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002387.1 /DEF=Homo sapiens, nucleosome assembly protein 1-like 1, clone MGC:8688, mRNA, complete cds. /FEA=mRNA /PROD=nucleosome assembly protein 1-like 1 /DB_XREF=gi:12803166 /UG=Hs.179662 nucleosome assembly protein 1-like 1 /FL=gb:BC002387.1 gb:AL162068.1 BC002387 nucleosome assembly protein 1-like 1 NAP1L1 4673 NM_004537 /// NM_139207 /// XM_005268895 /// XM_005268896 /// XM_006719422 /// XM_006719423 /// XM_006719424 /// XM_006719425 /// XR_245930 /// XR_245931 /// XR_245932 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 83.30 346.60 2.48 0.04 0.07 -4.52
214007_s_at 214007_s_at AW665024 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW665024 /FEA=EST /DB_XREF=gi:7457569 /DB_XREF=est:hi86c09.x1 /CLONE=IMAGE:2979184 /UG=Hs.82643 protein tyrosine kinase 9 AW665024 twinfilin actin-binding protein 1 TWF1 5756 NM_001242397 /// NM_002822 /// NM_198974 /// NR_073472 /// NR_073473 0030837 // negative regulation of actin filament polymerization // inferred from sequence or structural similarity /// 0042989 // sequestering of actin monomers // inferred from sequence or structural similarity /// 0043538 // regulation of actin phosphorylation // inferred from direct assay /// 0051016 // barbed-end actin filament capping // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0030016 // myofibril // inferred from sequence or structural similarity /// 0030175 // filopodium // inferred from sequence or structural similarity /// 0032587 // ruffle membrane // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0003785 // actin monomer binding // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from direct assay /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from sequence or structural similarity -46.12 193.74 -2.48 0.04 0.07 -4.52
222033_s_at 222033_s_at AA058828 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA058828 /FEA=EST /DB_XREF=gi:1551654 /DB_XREF=est:zf66f10.s1 /CLONE=IMAGE:381931 /UG=Hs.138671 fms-related tyrosine kinase 1 (vascular endothelial growth factorvascular permeability factor receptor) AA058828 fms-related tyrosine kinase 1 FLT1 2321 NM_001159920 /// NM_001160030 /// NM_001160031 /// NM_002019 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002548 // monocyte chemotaxis // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0010863 // positive regulation of phospholipase C activity // inferred from mutant phenotype /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from direct assay /// 0036323 // vascular endothelial growth factor receptor-1 signaling pathway // inferred from direct assay /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from direct assay /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0048514 // blood vessel morphogenesis // inferred from sequence or structural similarity /// 0048598 // embryonic morphogenesis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0005021 // vascular endothelial growth factor-activated receptor activity // inferred from direct assay /// 0005021 // vascular endothelial growth factor-activated receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from physical interaction /// 0036326 // VEGF-A-activated receptor activity // inferred from direct assay /// 0036327 // VEGF-B-activated receptor activity // inferred from direct assay /// 0036332 // placental growth factor-activated receptor activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from electronic annotation -25.20 92.47 -2.48 0.04 0.07 -4.52
201490_s_at 201490_s_at NM_005729 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005729.1 /DEF=Homo sapiens peptidylprolyl isomerase F (cyclophilin F) (PPIF), mRNA. /FEA=mRNA /GEN=PPIF /PROD=peptidylprolyl isomerase F (cyclophilin F) /DB_XREF=gi:5031986 /UG=Hs.173125 peptidylprolyl isomerase F (cyclophilin F) /FL=gb:BC005020.1 gb:M80254.1 gb:NM_005729.1 NM_005729 peptidylprolyl isomerase F PPIF 10105 NM_005729 /// XM_005269379 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0002931 // response to ischemia // inferred from sequence or structural similarity /// 0006457 // protein folding // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0010849 // regulation of proton-transporting ATPase activity, rotational mechanism // inferred from sequence or structural similarity /// 0010939 // regulation of necrotic cell death // inferred from electronic annotation /// 0010940 // positive regulation of necrotic cell death // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // inferred from sequence or structural similarity /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0046902 // regulation of mitochondrial membrane permeability // inferred from sequence or structural similarity /// 0070301 // cellular response to hydrogen peroxide // inferred from mutant phenotype /// 0071243 // cellular response to arsenic-containing substance // inferred from sequence or structural similarity /// 0071277 // cellular response to calcium ion // inferred from sequence or structural similarity /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from sequence or structural similarity /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0090324 // negative regulation of oxidative phosphorylation // inferred from sequence or structural similarity /// 1902445 // regulation of mitochondrial membrane permeability involved in programmed necrotic cell death // inferred from mutant phenotype /// 2000276 // negative regulation of oxidative phosphorylation uncoupler activity // inferred from sequence or structural similarity /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0016020 // membrane // traceable author statement 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016018 // cyclosporin A binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 38.60 117.65 2.48 0.04 0.07 -4.52
206099_at 206099_at NM_006255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006255.1 /DEF=Homo sapiens protein kinase C, eta (PRKCH), mRNA. /FEA=mRNA /GEN=PRKCH /PROD=protein kinase C, eta /DB_XREF=gi:5453971 /UG=Hs.315366 protein kinase C, eta /FL=gb:M55284.1 gb:NM_006255.1 NM_006255 protein kinase C, eta PRKCH 5583 NM_006255 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0034351 // negative regulation of glial cell apoptotic process // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0045618 // positive regulation of keratinocyte differentiation // inferred from sequence or structural similarity /// 0050861 // positive regulation of B cell receptor signaling pathway // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0060252 // positive regulation of glial cell proliferation // inferred from mutant phenotype /// 0070528 // protein kinase C signaling // inferred from electronic annotation /// 2000810 // regulation of tight junction assembly // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // traceable author statement /// 0004699 // calcium-independent protein kinase C activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017160 // Ral GTPase binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 89.98 252.29 2.48 0.04 0.07 -4.52
201258_at 201258_at NM_001020 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001020.1 /DEF=Homo sapiens ribosomal protein S16 (RPS16), mRNA. /FEA=mRNA /GEN=RPS16 /PROD=ribosomal protein S16 /DB_XREF=gi:4506690 /UG=Hs.80617 ribosomal protein S16 /FL=gb:BC004324.1 gb:M60854.1 gb:NM_001020.1 NM_001020 ribosomal protein S16 RPS16 6217 NM_001020 /// XM_005259137 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -486.90 1940.42 -2.48 0.04 0.07 -4.52
201108_s_at 201108_s_at BF055462 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF055462 /FEA=EST /DB_XREF=gi:10809358 /DB_XREF=est:7j80e06.x1 /CLONE=IMAGE:3392770 /UG=Hs.87409 thrombospondin 1 /FL=gb:NM_003246.1 BF055462 thrombospondin 1 THBS1 7057 NM_003246 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0001666 // response to hypoxia // non-traceable author statement /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001953 // negative regulation of cell-matrix adhesion // inferred from direct assay /// 0002040 // sprouting angiogenesis // inferred from mutant phenotype /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0002576 // platelet degranulation // traceable author statement /// 0002581 // negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from direct assay /// 0002605 // negative regulation of dendritic cell antigen processing and presentation // inferred from direct assay /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003197 // endocardial cushion development // inferred from electronic annotation /// 0003417 // growth plate cartilage development // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from expression pattern /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007155 // cell adhesion // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010596 // negative regulation of endothelial cell migration // inferred from direct assay /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from direct assay /// 0010751 // negative regulation of nitric oxide mediated signal transduction // inferred from direct assay /// 0010754 // negative regulation of cGMP-mediated signaling // inferred from direct assay /// 0010757 // negative regulation of plasminogen activation // inferred from direct assay /// 0010759 // positive regulation of macrophage chemotaxis // inferred from sequence or structural similarity /// 0010763 // positive regulation of fibroblast migration // inferred from direct assay /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0018149 // peptide cross-linking // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030194 // positive regulation of blood coagulation // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032570 // response to progesterone // traceable author statement /// 0032695 // negative regulation of interleukin-12 production // inferred from direct assay /// 0032914 // positive regulation of transforming growth factor beta1 production // inferred from sequence or structural similarity /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034605 // cellular response to heat // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from direct assay /// 0043032 // positive regulation of macrophage activation // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043652 // engulfment of apoptotic cell // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0048266 // behavioral response to pain // inferred from sequence or structural similarity /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050921 // positive regulation of chemotaxis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay /// 0051895 // negative regulation of focal adhesion assembly // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0051918 // negative regulation of fibrinolysis // inferred from direct assay /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071636 // positive regulation of transforming growth factor beta production // inferred from electronic annotation /// 1900119 // positive regulation of execution phase of apoptosis // inferred from direct assay /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from direct assay /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity /// 0030141 // secretory granule // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // traceable author statement /// 0031091 // platelet alpha granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001786 // phosphatidylserine binding // inferred from direct assay /// 0001948 // glycoprotein binding // non-traceable author statement /// 0001968 // fibronectin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from mutant phenotype /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from direct assay /// 0017134 // fibroblast growth factor binding // inferred from direct assay /// 0030169 // low-density lipoprotein particle binding // inferred from direct assay /// 0042802 // identical protein binding // non-traceable author statement /// 0043236 // laminin binding // inferred from direct assay /// 0043394 // proteoglycan binding // traceable author statement /// 0050431 // transforming growth factor beta binding // inferred from sequence or structural similarity /// 0050431 // transforming growth factor beta binding // traceable author statement /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0070051 // fibrinogen binding // inferred from direct assay /// 0070052 // collagen V binding // inferred from direct assay -266.15 2683.72 -2.48 0.04 0.07 -4.52
211966_at 211966_at AA909035 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA909035 /FEA=EST /DB_XREF=gi:3048440 /DB_XREF=est:ol11h01.s1 /CLONE=IMAGE:1523185 /UG=Hs.75617 collagen, type IV, alpha 2 AA909035 collagen, type IV, alpha 2 COL4A2 1284 NM_001846 0001525 // angiogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // non-traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005587 // collagen type IV trimer // traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -230.08 782.46 -2.47 0.04 0.07 -4.52
221613_s_at 221613_s_at AL136598 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136598.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564F2116 (from clone DKFZp564F2116); complete cds. /FEA=mRNA /GEN=DKFZp564F2116 /PROD=hypothetical protein /DB_XREF=gi:13276696 /UG=Hs.83954 protein associated with PRK1 /FL=gb:AL136598.1 AL136598 zinc finger, AN1-type domain 6 ZFAND6 54469 NM_001242911 /// NM_001242912 /// NM_001242913 /// NM_001242914 /// NM_001242915 /// NM_001242916 /// NM_001242917 /// NM_001242918 /// NM_001242919 /// NM_019006 /// XM_006720574 0006625 // protein targeting to peroxisome // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043122 // regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0071356 // cellular response to tumor necrosis factor // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -94.70 385.93 -2.47 0.04 0.07 -4.52
221502_at 221502_at AL120704 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL120704 /FEA=EST /DB_XREF=gi:5926603 /DB_XREF=est:DKFZp762C1712_r1 /CLONE=DKFZp762C1712 /UG=Hs.3886 karyopherin alpha 3 (importin alpha 4) /FL=gb:D89618.1 gb:AF034756.1 gb:NM_002267.1 AL120704 karyopherin alpha 3 (importin alpha 4) KPNA3 3839 NM_002267 0006461 // protein complex assembly // traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0046718 // viral entry into host cell // inferred from electronic annotation /// 0075732 // viral penetration into host nucleus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008565 // protein transporter activity // inferred from electronic annotation 52.12 397.24 2.47 0.04 0.07 -4.52
200030_s_at 200030_s_at NM_002635 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002635.1 /DEF=Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 (SLC25A3), nuclear gene encoding mitochondrial protein, transcript variant 1b, mRNA. /FEA=mRNA /GEN=SLC25A3 /PROD=phosphate carrier precursor isoform 1b /DB_XREF=gi:4505774 /UG=Hs.78713 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 /FL=gb:BC000998.1 gb:BC001328.1 gb:BC003504.1 gb:BC004345.1 gb:NM_002635.1 NM_002635 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 SLC25A3 5250 NM_002635 /// NM_005888 /// NM_213611 /// NM_213612 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0006810 // transport // traceable author statement /// 0035435 // phosphate ion transmembrane transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0015293 // symporter activity // inferred from electronic annotation /// 0015320 // phosphate ion carrier activity // traceable author statement /// 0032403 // protein complex binding // inferred from direct assay -387.07 2572.71 -2.47 0.04 0.07 -4.52
221725_at 221725_at AI962978 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI962978 /FEA=EST /DB_XREF=gi:5755691 /DB_XREF=est:wt25f05.x1 /CLONE=IMAGE:2508513 /UG=Hs.288908 WAS protein family, member 2 /FL=gb:NM_006990.1 gb:AB026542.1 AI962978 WAS protein family, member 2 WASF2 10163 NM_001201404 /// NM_006990 0001505 // regulation of neurotransmitter levels // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // traceable author statement /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0016601 // Rac protein signal transduction // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0035855 // megakaryocyte development // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051497 // negative regulation of stress fiber assembly // inferred from mutant phenotype /// 0072673 // lamellipodium morphogenesis // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031209 // SCAR complex // inferred from mutant phenotype /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0004969 // histamine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from mutant phenotype 52.87 293.94 2.47 0.04 0.07 -4.52
213503_x_at 213503_x_at BE908217 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE908217 /FEA=EST /DB_XREF=gi:10402569 /DB_XREF=est:601500477F1 /CLONE=IMAGE:3902323 /UG=Hs.217493 annexin A2 BE908217 annexin A2 ANXA2 302 NM_001002857 /// NM_001002858 /// NM_001136015 /// NM_004039 0001525 // angiogenesis // inferred from expression pattern /// 0001765 // membrane raft assembly // inferred from mutant phenotype /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0006900 // membrane budding // inferred from mutant phenotype /// 0007589 // body fluid secretion // inferred from electronic annotation /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // inferred from direct assay /// 0036035 // osteoclast development // inferred from direct assay /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051099 // positive regulation of binding // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0071229 // cellular response to acid // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019897 // extrinsic component of plasma membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031902 // late endosome membrane // inferred from direct assay /// 0031982 // vesicle // inferred from electronic annotation /// 0035749 // myelin sheath adaxonal region // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0044354 // macropinosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from mutant phenotype /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0044548 // S100 protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -777.70 3920.30 -2.47 0.04 0.07 -4.52
212253_x_at 212253_x_at BG253119 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG253119 /FEA=EST /DB_XREF=gi:12762935 /DB_XREF=est:602363756F1 /CLONE=IMAGE:4472293 /UG=Hs.198689 KIAA0728 protein BG253119 dystonin DST 667 NM_001144769 /// NM_001144770 /// NM_001144771 /// NM_001723 /// NM_015548 /// NM_020388 /// NM_183380 /// XM_005249310 /// XM_005249311 /// XM_005249312 /// XM_005249313 /// XM_005249314 /// XM_005249315 /// XM_005249316 /// XM_005249317 /// XM_005249318 /// XM_005249319 /// XM_005249320 /// XM_005249322 /// XM_005249323 /// XM_005249324 /// XM_005249325 /// XM_005249326 /// XM_006715169 0000226 // microtubule cytoskeleton organization // inferred from direct assay /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006620 // posttranslational protein targeting to membrane // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0009611 // response to wounding // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030011 // maintenance of cell polarity // inferred from mutant phenotype /// 0030198 // extracellular matrix organization // traceable author statement /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // inferred from direct assay /// 0045104 // intermediate filament cytoskeleton organization // inferred from expression pattern /// 0045104 // intermediate filament cytoskeleton organization // inferred from sequence or structural similarity /// 0045104 // intermediate filament cytoskeleton organization // non-traceable author statement /// 0048870 // cell motility // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005604 // basement membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0009925 // basal plasma membrane // non-traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from direct assay /// 0030056 // hemidesmosome // traceable author statement /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from direct assay /// 0031673 // H zone // inferred from electronic annotation /// 0035371 // microtubule plus-end // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0060053 // neurofilament cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016887 // ATPase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from direct assay -41.05 68.10 -2.47 0.04 0.07 -4.52
209440_at 209440_at BC001605 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001605.1 /DEF=Homo sapiens, phosphoribosyl pyrophosphate synthetase 1, clone MGC:2256, mRNA, complete cds. /FEA=mRNA /PROD=phosphoribosyl pyrophosphate synthetase 1 /DB_XREF=gi:12804406 /UG=Hs.56 phosphoribosyl pyrophosphate synthetase 1 /FL=gb:BC001605.1 gb:D00860.1 BC001605 phosphoribosyl pyrophosphate synthetase 1 PRPS1 5631 NM_001204402 /// NM_002764 0005975 // carbohydrate metabolic process // traceable author statement /// 0006015 // 5-phosphoribose 1-diphosphate biosynthetic process // inferred from electronic annotation /// 0006015 // 5-phosphoribose 1-diphosphate biosynthetic process // traceable author statement /// 0006144 // purine nucleobase metabolic process // inferred from mutant phenotype /// 0006164 // purine nucleotide biosynthetic process // inferred from mutant phenotype /// 0006167 // AMP biosynthetic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // non-traceable author statement /// 0007399 // nervous system development // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0034418 // urate biosynthetic process // inferred from mutant phenotype /// 0044249 // cellular biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046101 // hypoxanthine biosynthetic process // inferred from mutant phenotype 0002189 // ribose phosphate diphosphokinase complex // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // not recorded /// 0004749 // ribose phosphate diphosphokinase activity // inferred from direct assay /// 0004749 // ribose phosphate diphosphokinase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0016208 // AMP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043531 // ADP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 41.15 155.32 2.47 0.04 0.07 -4.52
201568_at 201568_at NM_014402 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014402.1 /DEF=Homo sapiens low molecular mass ubiquinone-binding protein (9.5kD) (QP-C), mRNA. /FEA=mRNA /GEN=QP-C /PROD=low molecular mass ubiquinone-binding protein /DB_XREF=gi:7657485 /UG=Hs.3709 low molecular mass ubiquinone-binding protein (9.5kD) /FL=gb:BC001390.1 gb:D50369.1 gb:NM_014402.1 NM_014402 ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa UQCRQ 27089 NM_014402 0021539 // subthalamus development // inferred from electronic annotation /// 0021548 // pons development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021794 // thalamus development // inferred from electronic annotation /// 0021854 // hypothalamus development // inferred from electronic annotation /// 0021860 // pyramidal neuron development // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0030901 // midbrain development // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation 62.50 703.62 2.47 0.04 0.07 -4.52
212197_x_at 212197_x_at AB020671 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB020671.1 /DEF=Homo sapiens mRNA for KIAA0864 protein, partial cds. /FEA=mRNA /GEN=KIAA0864 /PROD=KIAA0864 protein /DB_XREF=gi:4240216 /UG=Hs.84883 KIAA0864 protein AB020671 myosin phosphatase Rho interacting protein MPRIP 23164 NM_015134 /// NM_201274 /// XM_005256563 /// XM_005256564 /// XM_006721487 /// XM_006721488 /// XM_006721489 /// XM_006721490 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation -105.03 484.09 -2.47 0.04 0.07 -4.52
201039_s_at 201039_s_at BF572938 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF572938 /FEA=EST /DB_XREF=gi:11646661 /DB_XREF=est:602078949F2 /CLONE=IMAGE:4253100 /UG=Hs.180455 RAD23 (S. cerevisiae) homolog A /FL=gb:NM_005053.1 gb:D21235.1 BF572938 RAD23 homolog A (S. cerevisiae) RAD23A 5886 NM_001270362 /// NM_001270363 /// NM_005053 /// NR_072976 0006281 // DNA repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032434 // regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031593 // polyubiquitin binding // inferred from direct assay /// 1990381 // ubiquitin-specific protease binding // inferred from physical interaction -38.47 151.99 -2.46 0.04 0.07 -4.52
212808_at 212808_at AI884627 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI884627 /FEA=EST /DB_XREF=gi:5589791 /DB_XREF=est:wl59b11.x1 /CLONE=IMAGE:2429181 /UG=Hs.274417 PTD017 protein AI884627 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein NFATC2IP 84901 NM_032815 0001816 // cytokine production // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 41.08 55.16 2.46 0.04 0.07 -4.52
201312_s_at 201312_s_at NM_003022 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003022.1 /DEF=Homo sapiens SH3 domain binding glutamic acid-rich protein like (SH3BGRL), mRNA. /FEA=mRNA /GEN=SH3BGRL /PROD=SH3 domain binding glutamic acid-rich proteinlike /DB_XREF=gi:4506924 /UG=Hs.14368 SH3 domain binding glutamic acid-rich protein like /FL=gb:AL136718.1 gb:AF042081.1 gb:NM_003022.1 NM_003022 SH3 domain binding glutamate-rich protein like SH3BGRL 6451 NM_003022 0009967 // positive regulation of signal transduction // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0017124 // SH3 domain binding // inferred from electronic annotation 105.33 406.09 2.46 0.04 0.07 -4.52
217717_s_at 217717_s_at BF246499 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF246499 /FEA=EST /DB_XREF=gi:11160924 /DB_XREF=est:601854744F1 /CLONE=IMAGE:4074659 /UG=Hs.182238 GW128 protein /FL=gb:AF107406.1 gb:NM_014052.1 BF246499 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta YWHAB 7529 NM_003404 /// NM_139323 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0006605 // protein targeting // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035308 // negative regulation of protein dephosphorylation // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051220 // cytoplasmic sequestering of protein // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0050815 // phosphoserine binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 95.25 652.70 2.46 0.04 0.07 -4.52
212246_at 212246_at BE880828 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE880828 /FEA=EST /DB_XREF=gi:10329604 /DB_XREF=est:601493261F1 /CLONE=IMAGE:3895407 /UG=Hs.84775 Human transposon-like element mRNA BE880828 multiple coagulation factor deficiency 2 MCFD2 90411 NM_001171506 /// NM_001171507 /// NM_001171508 /// NM_001171509 /// NM_001171510 /// NM_001171511 /// NM_139279 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 31.75 136.40 2.46 0.04 0.07 -4.53
201304_at 201304_at NM_005000 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005000.2 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 (13kD, B13) (NDUFA5), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=NDUFA5 /PROD=NADH dehydrogenase (ubiquinone) 1 alphasubcomplex, 5 /DB_XREF=gi:13699821 /UG=Hs.83916 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 (13kD, B13) /FL=gb:BC000813.1 gb:NM_005000.2 gb:U53468.1 gb:U64028.1 NM_005000 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 NDUFA5 4698 NM_001282419 /// NM_001282420 /// NM_001282421 /// NM_001282422 /// NM_001291304 /// NM_005000 /// NR_104168 /// NR_104169 /// NR_111925 /// NR_111926 /// XM_005250371 /// XR_426239 /// XR_428243 /// XR_432226 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0016651 // oxidoreductase activity, acting on NAD(P)H // inferred from electronic annotation 49.15 127.83 2.46 0.04 0.07 -4.53
213649_at 213649_at AA524053 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA524053 /FEA=EST /DB_XREF=gi:2264981 /DB_XREF=est:ng33b07.s1 /CLONE=IMAGE:936565 /UG=Hs.184167 splicing factor, arginineserine-rich 7 (35kD) AA524053 serine/arginine-rich splicing factor 7 SRSF7 6432 NM_001031684 /// NM_001195446 /// NM_006276 /// XM_005264484 /// XM_005264485 /// XM_005264486 /// XR_426994 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -35.32 118.71 -2.46 0.04 0.07 -4.53
202416_at 202416_at NM_003315 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003315.1 /DEF=Homo sapiens tetratricopeptide repeat domain 2 (TTC2), mRNA. /FEA=mRNA /GEN=TTC2 /PROD=tetratricopeptide repeat domain 2 /DB_XREF=gi:4507712 /UG=Hs.5542 DnaJ (Hsp40) homolog, subfamily C, member 7 /FL=gb:U46571.1 gb:NM_003315.1 NM_003315 DnaJ (Hsp40) homolog, subfamily C, member 7 DNAJC7 7266 NM_001144766 /// NM_003315 /// NR_029431 /// XM_006722050 /// XM_006722051 /// XM_006722052 /// XM_006722053 /// XM_006722054 0006457 // protein folding // traceable author statement /// 0070389 // chaperone cofactor-dependent protein refolding // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from physical interaction 38.85 154.78 2.46 0.04 0.07 -4.53
200888_s_at 200888_s_at NM_000978 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000978.1 /DEF=Homo sapiens ribosomal protein L23 (RPL23), mRNA. /FEA=mRNA /GEN=RPL23 /PROD=ribosomal protein L23 /DB_XREF=gi:4506604 /UG=Hs.234518 ribosomal protein L23 /FL=gb:NM_000978.1 NM_000978 ribosomal protein L23 /// small nucleolar RNA, H/ACA box 21 RPL23 /// SNORA21 9349 /// 619505 NM_000978 /// NR_002576 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006610 // ribosomal protein import into nucleus // non-traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -350.00 1898.47 -2.45 0.04 0.07 -4.53
201737_s_at 201737_s_at NM_005885 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005885.1 /DEF=Homo sapiens similar to S. cerevisiae SSM4 (TEB4), mRNA. /FEA=mRNA /GEN=TEB4 /PROD=similar to S. cerevisiae SSM4 /DB_XREF=gi:5032166 /UG=Hs.20141 similar to S. cerevisiae SSM4 /FL=gb:AF009301.1 gb:NM_005885.1 NM_005885 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase MARCH6 10299 NM_001270660 /// NM_001270661 /// NM_005885 0016567 // protein ubiquitination // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0031624 // ubiquitin conjugating enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 47.05 94.53 2.45 0.04 0.07 -4.53
200659_s_at 200659_s_at NM_002634 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002634.2 /DEF=Homo sapiens prohibitin (PHB), mRNA. /FEA=mRNA /GEN=PHB /PROD=prohibitin /DB_XREF=gi:6031190 /UG=Hs.75323 prohibitin /FL=gb:NM_002634.2 NM_002634 prohibitin PHB 5245 NM_001281496 /// NM_001281497 /// NM_001281715 /// NM_002634 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006260 // DNA replication // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010944 // negative regulation of transcription by competitive promoter binding // inferred from direct assay /// 0016575 // histone deacetylation // inferred from direct assay /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0042981 // regulation of apoptotic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0050847 // progesterone receptor signaling pathway // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 0071354 // cellular response to interleukin-6 // inferred from direct assay /// 0071897 // DNA biosynthetic process // inferred from electronic annotation /// 2000323 // negative regulation of glucocorticoid receptor signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay 37.40 75.95 2.45 0.04 0.07 -4.53
219296_at 219296_at NM_019028 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019028.1 /DEF=Homo sapiens hypothetical protein similar to ankyrin repeat-containing priotein AKR1 (FLJ10852), mRNA. /FEA=mRNA /GEN=FLJ10852 /PROD=hypothetical protein similar to ankyrinrepeat-containing priotein AKR1 /DB_XREF=gi:9506622 /UG=Hs.95744 hypothetical protein similar to ankyrin repeat-containing priotein AKR1 /FL=gb:NM_019028.1 NM_019028 zinc finger, DHHC-type containing 13 ZDHHC13 54503 NM_001001483 /// NM_019028 /// XM_005252996 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from sequence or structural similarity /// 0015693 // magnesium ion transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015095 // magnesium ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0016409 // palmitoyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019706 // protein-cysteine S-palmitoyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 53.17 124.16 2.45 0.04 0.07 -4.53
208652_at 208652_at BC000400 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000400.1 /DEF=Homo sapiens, protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform, clone MGC:8533, mRNA, complete cds. /FEA=mRNA /PROD=protein phosphatase 2 (formerly 2A), catalyticsubunit, alpha isoform /DB_XREF=gi:12653262 /UG=Hs.91773 protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform /FL=gb:BC000400.1 gb:BC002657.1 gb:J03804.1 gb:M36951.1 gb:NM_002715.1 BC000400 protein phosphatase 2, catalytic subunit, alpha isozyme PPP2CA 5515 NM_002715 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000188 // inactivation of MAPK activity // non-traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006275 // regulation of DNA replication // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006470 // protein dephosphorylation // traceable author statement /// 0006672 // ceramide metabolic process // non-traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // non-traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010033 // response to organic substance // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0010719 // negative regulation of epithelial to mesenchymal transition // inferred from mutant phenotype /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019932 // second-messenger-mediated signaling // non-traceable author statement /// 0030111 // regulation of Wnt signaling pathway // non-traceable author statement /// 0030155 // regulation of cell adhesion // non-traceable author statement /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0031952 // regulation of protein autophosphorylation // inferred from electronic annotation /// 0040008 // regulation of growth // non-traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // non-traceable author statement /// 0045595 // regulation of cell differentiation // non-traceable author statement /// 0070208 // protein heterotrimerization // inferred from electronic annotation /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from mutant phenotype 0000159 // protein phosphatase type 2A complex // inferred from direct assay /// 0000159 // protein phosphatase type 2A complex // traceable author statement /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // non-traceable author statement /// 0016020 // membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -81.55 609.95 -2.45 0.04 0.07 -4.53
210296_s_at 210296_s_at BC005375 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005375.1 /DEF=Homo sapiens, peroxisomal membrane protein 3 (35kD, Zellweger syndrome), clone MGC:12491, mRNA, complete cds. /FEA=mRNA /PROD=peroxisomal membrane protein 3 (35kD, Zellwegersyndrome) /DB_XREF=gi:13529226 /UG=Hs.180612 peroxisomal membrane protein 3 (35kD, Zellweger syndrome) /FL=gb:BC005375.1 BC005375 peroxisomal biogenesis factor 2 PEX2 5828 NM_000318 /// NM_001079867 /// NM_001172086 /// NM_001172087 0000038 // very long-chain fatty acid metabolic process // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001764 // neuron migration // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 0006699 // bile acid biosynthetic process // inferred from electronic annotation /// 0007031 // peroxisome organization // inferred from mutant phenotype /// 0007399 // nervous system development // inferred from electronic annotation /// 0016558 // protein import into peroxisome matrix // inferred from mutant phenotype /// 0031648 // protein destabilization // inferred from mutant phenotype /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // inferred from mutant phenotype /// 0050680 // negative regulation of epithelial cell proliferation // inferred from mutant phenotype 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005779 // integral component of peroxisomal membrane // inferred from mutant phenotype /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 28.20 82.12 2.45 0.04 0.07 -4.53
214724_at 214724_at AF070621 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF070621.1 /DEF=Homo sapiens clone 24760 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3283887 /UG=Hs.61408 Homo sapiens mRNA for KIAA1735 protein, partial cds AF070621 DIX domain containing 1 DIXDC1 85458 NM_001037954 /// NM_001278542 /// NM_033425 /// XM_005277726 /// XM_005277727 /// XM_005277728 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0021695 // cerebellar cortex development // not recorded /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021869 // forebrain ventricular zone progenitor cell division // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0032956 // regulation of actin cytoskeleton organization // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // not recorded /// 0060071 // Wnt signaling pathway, planar cell polarity pathway // not recorded /// 0070507 // regulation of microtubule cytoskeleton organization // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043679 // axon terminus // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // not recorded /// 0043015 // gamma-tubulin binding // inferred from direct assay 42.25 102.85 2.44 0.04 0.07 -4.53
212433_x_at 212433_x_at AA630314 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA630314 /FEA=EST /DB_XREF=gi:2552925 /DB_XREF=est:ac08f07.s1 /CLONE=IMAGE:855877 /UG=Hs.182426 ribosomal protein S2 AA630314 ribosomal protein S2 /// small nucleolar RNA, H/ACA box 64 RPS2 /// SNORA64 6187 /// 26784 NM_002952 /// NR_002326 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051347 // positive regulation of transferase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -478.18 3553.36 -2.44 0.04 0.07 -4.53
218061_at 218061_at NM_014623 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014623.1 /DEF=Homo sapiens male-enhanced antigen (MEA), mRNA. /FEA=mRNA /GEN=MEA /PROD=male-enhanced antigen /DB_XREF=gi:7657325 /UG=Hs.278362 male-enhanced antigen /FL=gb:BC001754.1 gb:M27937.1 gb:L10400.1 gb:NM_014623.1 NM_014623 male-enhanced antigen 1 MEA1 4201 NM_014623 /// XM_005249121 /// XM_005249122 /// XM_005249123 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008584 // male gonad development // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 47.80 190.43 2.44 0.04 0.08 -4.53
209607_x_at 209607_x_at U08032 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U08032.1 /DEF=Human thermolabile (monoamine, M form) phenol sulfotransferase (STM) mRNA, complete cds. /FEA=mRNA /GEN=STM /PROD=thermolabile (monoamine, M form) phenolsulfotransferase /DB_XREF=gi:468256 /UG=Hs.274614 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 /FL=gb:NM_003166.1 gb:L19956.1 gb:U34199.1 gb:U08032.1 U08032 sulfotransferase 1A3/1A4-like /// SLX1A-SULT1A3 readthrough (NMD candidate) /// SLX1B-SULT1A4 readthrough (NMD candidate) /// sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 /// sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 LOC101929857 /// SLX1A-SULT1A3 /// SLX1B-SULT1A4 /// SULT1A3 /// SULT1A4 6818 /// 445329 /// 100526830 /// 100526831 /// 101929857 NM_001017387 /// NM_001017389 /// NM_001017390 /// NM_001017391 /// NM_003166 /// NM_177552 /// NR_037608 /// NR_037609 /// XM_005276506 /// XM_005276507 /// XM_006726621 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0009812 // flavonoid metabolic process // inferred from direct assay /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0051923 // sulfation // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0004062 // aryl sulfotransferase activity // traceable author statement /// 0008146 // sulfotransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation -33.43 115.64 -2.44 0.04 0.08 -4.53
204288_s_at 204288_s_at NM_021069 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021069.1 /DEF=Homo sapiens ArgAbl-interacting protein ArgBP2 (ARGBP2), transcript variant 2, mRNA. /FEA=mRNA /GEN=ARGBP2 /PROD=ArgAbl-interacting protein 2, isoform 2 /DB_XREF=gi:10947117 /UG=Hs.278626 ArgAbl-interacting protein ArgBP2 /FL=gb:NM_021069.1 gb:AB018320.1 NM_021069 sorbin and SH3 domain containing 2 SORBS2 8470 NM_001145670 /// NM_001145671 /// NM_001145672 /// NM_001145673 /// NM_001145674 /// NM_001145675 /// NM_001270771 /// NM_003603 /// NM_021069 /// XM_005263302 /// XM_005263305 /// XM_005263306 /// XM_005263307 /// XM_005263308 /// XM_005263310 /// XM_005263311 /// XM_005263312 /// XM_005263313 /// XM_006714345 /// XM_006714346 /// XM_006714347 /// XM_006714348 /// XM_006714349 /// XM_006714350 /// XM_006714351 /// XM_006714352 /// XM_006714353 /// XM_006714354 /// XM_006714355 /// XM_006714356 /// XM_006714357 /// XM_006714358 /// XM_006714359 /// XM_006714360 /// XM_006714361 /// XM_006714362 /// XM_006714363 /// XM_006714364 /// XM_006714365 /// XM_006714366 /// XM_006714367 /// XM_006714368 /// XM_006714369 /// XM_006714370 /// XM_006714371 /// XM_006714372 /// XM_006714373 /// XM_006714374 /// XM_006714375 /// XM_006714376 /// XM_006714377 /// XM_006714378 /// XM_006714379 /// XM_006714380 /// XM_006714381 /// XM_006714382 /// XM_006714383 /// XM_006714384 /// XM_006714385 /// XM_006714386 /// XM_006714387 /// XM_006714388 /// XM_006714389 /// XM_006714390 0007015 // actin filament organization // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030018 // Z disc // non-traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008093 // cytoskeletal adaptor activity // traceable author statement /// 0008307 // structural constituent of muscle // traceable author statement /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 32.22 108.09 2.43 0.04 0.08 -4.53
208756_at 208756_at U36764 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U36764.1 /DEF=Human TGF-beta receptor interacting protein 1 mRNA, complete cds. /FEA=mRNA /PROD=TGF-beta receptor interacting protein 1 /DB_XREF=gi:1036804 /UG=Hs.192023 eukaryotic translation initiation factor 3, subunit 2 (beta, 36kD) /FL=gb:U36764.1 gb:BC000413.1 gb:BC003140.1 gb:U39067.1 gb:NM_003757.1 gb:AF116697.1 U36764 eukaryotic translation initiation factor 3, subunit I EIF3I 8668 NM_003757 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -93.78 547.54 -2.43 0.04 0.08 -4.53
216060_s_at 216060_s_at AK021890 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK021890.1 /DEF=Homo sapiens cDNA FLJ11828 fis, clone HEMBA1006507, weakly similar to DIAPHANOUS PROTEIN HOMOLOG 2. /FEA=mRNA /DB_XREF=gi:10433178 /UG=Hs.197751 KIAA0666 protein AK021890 dishevelled associated activator of morphogenesis 1 DAAM1 23002 NM_001270520 /// NM_014992 /// XM_005267430 /// XM_005267431 /// XR_429298 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction -47.33 121.56 -2.43 0.04 0.08 -4.53
201840_at 201840_at NM_006156 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006156.1 /DEF=Homo sapiens neural precursor cell expressed, developmentally down-regulated 8 (NEDD8), mRNA. /FEA=mRNA /GEN=NEDD8 /PROD=neural precursor cell expressed, developmentallydown-regulated 8 /DB_XREF=gi:5453759 /UG=Hs.75512 neural precursor cell expressed, developmentally down-regulated 8 /FL=gb:D23662.1 gb:NM_006156.1 NM_006156 neural precursor cell expressed, developmentally down-regulated 8 NEDD8 4738 NM_006156 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0045116 // protein neddylation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction 153.40 466.52 2.43 0.04 0.08 -4.53
41220_at 41220_at AB023208 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB023208:Homo sapiens mRNA for KIAA0991 protein, complete cds /cds=(732,2000) /gb=AB023208 /gi=4589625 /ug=Hs.181002 /len=3938 AB023208 septin 9 SEPT9 10801 NM_001113491 /// NM_001113492 /// NM_001113493 /// NM_001113494 /// NM_001113495 /// NM_001113496 /// NM_001293695 /// NM_001293696 /// NM_001293697 /// NM_001293698 /// NM_006640 /// XM_005256959 /// XM_005256960 /// XM_005256961 /// XM_005256962 /// XM_006721643 /// XM_006721644 0006184 // GTP catabolic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0031105 // septin complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 108.38 316.46 2.43 0.04 0.08 -4.53
201757_at 201757_at NM_004552 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004552.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 5 (15kD) (NADH-coenzyme Q reductase) (NDUFS5), mRNA. /FEA=mRNA /GEN=NDUFS5 /PROD=NADH dehydrogenase (ubiquinone) Fe-S protein 5(15kD) (NADH-coenzyme Q reductase) /DB_XREF=gi:4758789 /UG=Hs.80595 NADH dehydrogenase (ubiquinone) Fe-S protein 5 (15kD) (NADH-coenzyme Q reductase) /FL=gb:BC001884.1 gb:AF020352.1 gb:AF047434.1 gb:NM_004552.1 NM_004552 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) /// ribosomal protein L10 NDUFS5 /// RPL10 4725 /// 6134 NM_001184979 /// NM_001256577 /// NM_001256580 /// NM_004552 /// NM_006013 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0032981 // mitochondrial respiratory chain complex I assembly // inferred from mutant phenotype /// 0044237 // cellular metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 203.07 1400.24 2.43 0.04 0.08 -4.53
202984_s_at 202984_s_at AA457021 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA457021 /FEA=EST /DB_XREF=gi:2179741 /DB_XREF=est:aa38a08.s1 /CLONE=IMAGE:815510 /UG=Hs.5443 BCL2-associated athanogene 5 /FL=gb:AF095195.2 gb:NM_004873.1 AA457021 BCL2-associated athanogene 5 BAG5 9529 NM_001015048 /// NM_001015049 /// NM_004873 0006457 // protein folding // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0051444 // negative regulation of ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0061084 // negative regulation of protein refolding // inferred from sequence or structural similarity /// 0070997 // neuron death // inferred from sequence or structural similarity /// 0090083 // regulation of inclusion body assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016234 // inclusion body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0031625 // ubiquitin protein ligase binding // inferred from sequence or structural similarity /// 0051087 // chaperone binding // inferred from physical interaction 28.42 53.96 2.43 0.04 0.08 -4.53
208856_x_at 208856_x_at BC003655 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003655.1 /DEF=Homo sapiens, ribosomal protein, large, P0, clone MGC:4770, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein, large, P0 /DB_XREF=gi:13177771 /UG=Hs.73742 ribosomal protein, large, P0 /FL=gb:BC000087.1 gb:BC003655.1 BC003655 ribosomal protein, large, P0 RPLP0 6175 NM_001002 /// NM_053275 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -888.00 4610.30 -2.43 0.04 0.08 -4.53
201587_s_at 201587_s_at NM_001569 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001569.2 /DEF=Homo sapiens interleukin-1 receptor-associated kinase 1 (IRAK1), mRNA. /FEA=mRNA /GEN=IRAK1 /PROD=interleukin-1 receptor-associated kinase 1 /DB_XREF=gi:4755143 /UG=Hs.182018 interleukin-1 receptor-associated kinase 1 /FL=gb:L76191.1 gb:NM_001569.2 NM_001569 interleukin-1 receptor-associated kinase 1 IRAK1 3654 NM_001025242 /// NM_001025243 /// NM_001569 /// XM_005274668 0000187 // activation of MAPK activity // traceable author statement /// 0001959 // regulation of cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // non-traceable author statement /// 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from direct assay /// 0007254 // JNK cascade // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016567 // protein ubiquitination // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from mutant phenotype /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0032494 // response to peptidoglycan // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0034134 // toll-like receptor 2 signaling pathway // inferred from mutant phenotype /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // non-traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051259 // protein oligomerization // inferred from mutant phenotype /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070498 // interleukin-1-mediated signaling pathway // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005811 // lipid particle // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0045323 // interleukin-1 receptor complex // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // non-traceable author statement /// 0004704 // NF-kappaB-inducing kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005149 // interleukin-1 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042803 // protein homodimerization activity // non-traceable author statement /// 0046982 // protein heterodimerization activity // inferred from physical interaction 61.93 317.94 2.43 0.04 0.08 -4.53
213969_x_at 213969_x_at BF683426 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF683426 /FEA=EST /DB_XREF=gi:11968834 /DB_XREF=est:602139603F1 /CLONE=IMAGE:4300777 /UG=Hs.183698 ribosomal protein L29 BF683426 ribosomal protein L29 RPL29 6159 NM_000992 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007566 // embryo implantation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -292.70 2286.22 -2.43 0.04 0.08 -4.53
218226_s_at 218226_s_at NM_004547 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004547.2 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4 (15kD, B15) (NDUFB4), mRNA. /FEA=mRNA /GEN=NDUFB4 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 4 (15kD, B15) /DB_XREF=gi:6041668 /UG=Hs.227750 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4 (15kD, B15) /FL=gb:BC000855.1 gb:AF044957.1 gb:NM_004547.2 NM_004547 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa NDUFB4 4710 NM_001168331 /// NM_004547 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006979 // response to oxidative stress // inferred from direct assay /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 97.93 874.49 2.42 0.04 0.08 -4.53
213347_x_at 213347_x_at AW132023 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW132023 /FEA=EST /DB_XREF=gi:6133630 /DB_XREF=est:xe71b05.x1 /CLONE=IMAGE:2613297 /UG=Hs.108124 ribosomal protein S4, X-linked AW132023 ribosomal protein S4, X-linked RPS4X 6191 NM_001007 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007275 // multicellular organismal development // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from direct assay /// 0005844 // polysome // inferred from direct assay /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -520.60 3004.75 -2.42 0.04 0.08 -4.53
212334_at 212334_at BE880245 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE880245 /FEA=EST /DB_XREF=gi:10329021 /DB_XREF=est:601490612F1 /CLONE=IMAGE:3893018 /UG=Hs.164036 Homo sapiens AKAP350C mRNA sequence, alternatively spliced BE880245 glucosamine (N-acetyl)-6-sulfatase GNS 2799 NM_002076 0005975 // carbohydrate metabolic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0042340 // keratan sulfate catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005764 // lysosome // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 47.62 254.56 2.42 0.04 0.08 -4.53
208929_x_at 208929_x_at BC004954 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004954.1 /DEF=Homo sapiens, clone MGC:10897, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:10897) /DB_XREF=gi:13436331 /UG=Hs.180842 ribosomal protein L13 /FL=gb:BC000851.1 gb:BC004954.1 gb:NM_000977.1 BC004954 ribosomal protein L13 /// small nucleolar RNA, C/D box 68 RPL13 /// SNORD68 6137 /// 606500 NM_000977 /// NM_001243130 /// NM_001243131 /// NM_033251 /// NR_002450 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022626 // cytosolic ribosome // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -534.05 2276.62 -2.42 0.04 0.08 -4.53
201418_s_at 201418_s_at NM_003107 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003107.1 /DEF=Homo sapiens SRY (sex determining region Y)-box 4 (SOX4), mRNA. /FEA=mRNA /GEN=SOX4 /PROD=SRY (sex determining region Y)-box 4 /DB_XREF=gi:4507162 /UG=Hs.83484 SRY (sex determining region Y)-box 4 /FL=gb:NM_003107.1 NM_003107 SRY (sex determining region Y)-box 4 SOX4 6659 NM_003107 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001841 // neural tube formation // inferred from sequence or structural similarity /// 0002328 // pro-B cell differentiation // inferred from sequence or structural similarity /// 0003183 // mitral valve morphogenesis // inferred from sequence or structural similarity /// 0003211 // cardiac ventricle formation // inferred from sequence or structural similarity /// 0003215 // cardiac right ventricle morphogenesis // inferred from sequence or structural similarity /// 0003289 // atrial septum primum morphogenesis // inferred from sequence or structural similarity /// 0003357 // noradrenergic neuron differentiation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from mutant phenotype /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014009 // glial cell proliferation // inferred from sequence or structural similarity /// 0021510 // spinal cord development // inferred from sequence or structural similarity /// 0021522 // spinal cord motor neuron differentiation // inferred from sequence or structural similarity /// 0021782 // glial cell development // inferred from sequence or structural similarity /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // inferred from mutant phenotype /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from sequence or structural similarity /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035910 // ascending aorta morphogenesis // inferred from sequence or structural similarity /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042769 // DNA damage response, detection of DNA damage // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046826 // negative regulation of protein export from nucleus // inferred from mutant phenotype /// 0048485 // sympathetic nervous system development // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0060070 // canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0060174 // limb bud formation // inferred from sequence or structural similarity /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060548 // negative regulation of cell death // inferred from sequence or structural similarity /// 0060563 // neuroepithelial cell differentiation // inferred from sequence or structural similarity /// 0060993 // kidney morphogenesis // inferred from sequence or structural similarity /// 0071333 // cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 2000761 // positive regulation of N-terminal peptidyl-lysine acetylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001046 // core promoter sequence-specific DNA binding // inferred from direct assay /// 0001071 // nucleic acid binding transcription factor activity // inferred from mutant phenotype /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -81.60 216.60 -2.42 0.04 0.08 -4.53
208853_s_at 208853_s_at L18887 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L18887.1 /DEF=Human calnexin mRNA, complete cds. /FEA=mRNA /PROD=calnexin /DB_XREF=gi:306480 /UG=Hs.155560 calnexin /FL=gb:NM_001746.1 gb:BC003552.1 gb:M94859.1 gb:M98452.1 gb:L10284.1 gb:L18887.1 L18887 calnexin CANX 821 NM_001024649 /// NM_001746 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0009306 // protein secretion // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048488 // synaptic vesicle endocytosis // inferred from sequence or structural similarity /// 0061077 // chaperone-mediated protein folding // inferred from electronic annotation /// 0072583 // clathrin-mediated endocytosis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0001948 // glycoprotein binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation -184.45 707.88 -2.42 0.04 0.08 -4.53
217286_s_at 217286_s_at BC001805 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC001805.1 /DEF=Homo sapiens, clone IMAGE:3543670, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3543670) /DB_XREF=gi:12804742 /UG=Hs.240615 hypothetical protein FLJ13556 similar to N-myc downstream regulated 3 BC001805 NDRG family member 3 NDRG3 57446 NM_022477 /// NM_032013 /// NR_038370 /// XM_006723837 /// XM_006723838 0007283 // spermatogenesis // non-traceable author statement /// 0030154 // cell differentiation // non-traceable author statement /// 0030308 // negative regulation of cell growth // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 69.87 99.26 2.42 0.04 0.08 -4.53
203857_s_at 203857_s_at NM_006810 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006810.1 /DEF=Homo sapiens for protein disulfide isomerase-related (PDIR), mRNA. /FEA=mRNA /GEN=PDIR /PROD=for protein disulfide isomerase-related /DB_XREF=gi:5803120 /UG=Hs.76901 for protein disulfide isomerase-related /FL=gb:D49490.1 gb:NM_006810.1 NM_006810 microRNA 7110 /// protein disulfide isomerase family A, member 5 MIR7110 /// PDIA5 10954 /// 102465667 NM_006810 /// NR_028444 /// NR_106960 /// XR_427359 /// XR_427360 0006457 // protein folding // not recorded /// 0006457 // protein folding // traceable author statement /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // traceable author statement 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement 0003756 // protein disulfide isomerase activity // not recorded /// 0003756 // protein disulfide isomerase activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation -110.17 520.09 -2.42 0.04 0.08 -4.53
38671_at 38671_at AB014520 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB014520:Homo sapiens mRNA for KIAA0620 protein, partial cds /cds=(0,5957) /gb=AB014520 /gi=3327053 /ug=Hs.105958 /len=6754 AB014520 plexin D1 PLXND1 23129 NM_015103 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007416 // synapse assembly // inferred from sequence or structural similarity /// 0030334 // regulation of cell migration // inferred from sequence or structural similarity /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0043542 // endothelial cell migration // inferred from sequence or structural similarity /// 0045765 // regulation of angiogenesis // inferred from sequence or structural similarity /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // inferred from electronic annotation /// 0071526 // semaphorin-plexin signaling pathway // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017154 // semaphorin receptor activity // inferred from sequence or structural similarity /// 0019904 // protein domain specific binding // inferred from physical interaction -65.87 615.41 -2.42 0.04 0.08 -4.53
211765_x_at 211765_x_at BC005982 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005982.1 /DEF=Homo sapiens, peptidylprolyl isomerase A (cyclophilin A), clone MGC:14681, mRNA, complete cds. /FEA=mRNA /PROD=peptidylprolyl isomerase A (cyclophilin A) /DB_XREF=gi:13543665 /FL=gb:BC005982.1 BC005982 peptidylprolyl isomerase A (cyclophilin A) PPIA 5478 NM_021130 /// NM_203430 /// NM_203431 /// XM_005249791 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0006278 // RNA-dependent DNA replication // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019061 // uncoating of virus // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019076 // viral release from host cell // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030260 // entry into host cell // traceable author statement /// 0034389 // lipid particle organization // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // traceable author statement /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0075713 // establishment of integrated proviral latency // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046790 // virion binding // non-traceable author statement /// 0051082 // unfolded protein binding // traceable author statement -1167.80 4810.38 -2.41 0.04 0.08 -4.53
213423_x_at 213423_x_at AI884858 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI884858 /FEA=EST /DB_XREF=gi:5590022 /DB_XREF=est:wl85f06.x1 /CLONE=IMAGE:2431715 /UG=Hs.71119 Putative prostate cancer tumor suppressor AI884858 tumor suppressor candidate 3 TUSC3 7991 NM_006765 /// NM_178234 /// XM_005273646 /// XM_005273647 /// XM_005273648 0006487 // protein N-linked glycosylation // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015693 // magnesium ion transport // inferred from genetic interaction /// 0015693 // magnesium ion transport // inferred from mutant phenotype /// 0018279 // protein N-linked glycosylation via asparagine // inferred from sequence or structural similarity /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0050890 // cognition // inferred from mutant phenotype 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0008250 // oligosaccharyltransferase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from sequence or structural similarity /// 0015095 // magnesium ion transmembrane transporter activity // inferred from mutant phenotype 43.50 137.30 2.41 0.04 0.08 -4.53
202468_s_at 202468_s_at NM_003798 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003798.1 /DEF=Homo sapiens catenin (cadherin-associated protein), alpha-like 1 (CTNNAL1), mRNA. /FEA=mRNA /GEN=CTNNAL1 /PROD=catenin (cadherin-associated protein),alpha-like 1 /DB_XREF=gi:4503128 /UG=Hs.58488 catenin (cadherin-associated protein), alpha-like 1 /FL=gb:AF006070.1 gb:U97067.1 gb:AF080071.1 gb:AF030233.1 gb:NM_003798.1 NM_003798 catenin (cadherin-associated protein), alpha-like 1 CTNNAL1 8727 NM_001286974 /// NM_003798 /// XM_005252291 0007155 // cell adhesion // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from electronic annotation 95.07 387.89 2.41 0.05 0.08 -4.53
208662_s_at 208662_s_at AI885338 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI885338 /FEA=EST /DB_XREF=gi:5590502 /DB_XREF=est:wl92e09.x1 /CLONE=IMAGE:2432392 /UG=Hs.118174 tetratricopeptide repeat domain 3 /FL=gb:D84294.1 AI885338 tetratricopeptide repeat domain 3 /// tetratricopeptide repeat domain 3 pseudogene 1 TTC3 /// TTC3P1 7267 /// 286495 NM_001001894 /// NM_003316 /// NR_030737 /// XM_005261045 /// XM_005261046 /// XM_005261047 /// XM_005261048 /// XM_005261049 /// XM_005261050 /// XM_005261051 /// XM_005261052 /// XM_005261053 /// XM_005261054 /// XM_005261055 /// XM_005261056 /// XM_005261058 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0010771 // negative regulation of cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005773 // vacuole // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 46.07 363.16 2.41 0.05 0.08 -4.53
210762_s_at 210762_s_at AF026219 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF026219.1 /DEF=Homo sapiens HP protein (HP) mRNA, complete cds. /FEA=mRNA /GEN=HP /PROD=HP protein /DB_XREF=gi:2559001 /UG=Hs.8700 deleted in liver cancer 1 /FL=gb:AF026219.1 gb:AF035119.1 gb:NM_006094.2 AF026219 DLC1 Rho GTPase activating protein DLC1 10395 NM_001164271 /// NM_006094 /// NM_024767 /// NM_182643 /// XM_005273374 /// XM_005273375 0001843 // neural tube closure // inferred from sequence or structural similarity /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0021575 // hindbrain morphogenesis // inferred from sequence or structural similarity /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from sequence or structural similarity /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032321 // positive regulation of Rho GTPase activity // inferred from mutant phenotype /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035024 // negative regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048041 // focal adhesion assembly // inferred from sequence or structural similarity /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051497 // negative regulation of stress fiber assembly // inferred from direct assay /// 1900119 // positive regulation of execution phase of apoptosis // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0030675 // Rac GTPase activator activity // inferred from direct assay /// 0042169 // SH2 domain binding // inferred from physical interaction -126.37 678.89 -2.41 0.05 0.08 -4.53
203255_at 203255_at NM_018693 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018693.1 /DEF=Homo sapiens vitiligo-associated protein VIT-1 (VIT1), mRNA. /FEA=mRNA /GEN=VIT1 /PROD=vitiligo-associated protein VIT-1 /DB_XREF=gi:10048403 /UG=Hs.284289 vitiligo-associated protein VIT-1 /FL=gb:NM_018693.1 gb:AF264714.1 NM_018693 F-box protein 11 FBXO11 80204 NM_001190274 /// NM_012167 /// NM_018693 /// NM_025133 /// XM_005264572 /// XM_005264573 /// XM_005264574 0006464 // cellular protein modification process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // non-traceable author statement /// 0035246 // peptidyl-arginine N-methylation // inferred from direct assay 0000151 // ubiquitin ligase complex // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016274 // protein-arginine N-methyltransferase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 39.42 70.81 2.41 0.05 0.08 -4.53
218125_s_at 218125_s_at NM_018246 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018246.1 /DEF=Homo sapiens hypothetical protein FLJ10853 (FLJ10853), mRNA. /FEA=mRNA /GEN=FLJ10853 /PROD=hypothetical protein FLJ10853 /DB_XREF=gi:8922717 /UG=Hs.72085 hypothetical protein FLJ10853 /FL=gb:NM_018246.1 NM_018246 coiled-coil domain containing 25 CCDC25 55246 NM_018246 /// XM_005273563 0070062 // extracellular vesicular exosome // inferred from direct assay 26.45 84.50 2.41 0.05 0.08 -4.53
201676_x_at 201676_x_at NM_002786 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002786.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 1 (PSMA1), mRNA. /FEA=mRNA /GEN=PSMA1 /PROD=proteasome (prosome, macropain) subunit, alphatype, 1 /DB_XREF=gi:4506178 /UG=Hs.82159 proteasome (prosome, macropain) subunit, alpha type, 1 /FL=gb:BC002577.1 gb:NM_002786.1 NM_002786 proteasome (prosome, macropain) subunit, alpha type, 1 PSMA1 5682 NM_001143937 /// NM_002786 /// NM_148976 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0005844 // polysome // traceable author statement /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -215.68 1362.16 -2.41 0.05 0.08 -4.53
211720_x_at 211720_x_at BC005863 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005863.1 /DEF=Homo sapiens, ribosomal protein, large, P0, clone MGC:3679, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein, large, P0 /DB_XREF=gi:13543411 /FL=gb:BC005863.1 BC005863 ribosomal protein, large, P0 RPLP0 6175 NM_001002 /// NM_053275 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -880.27 4563.69 -2.41 0.05 0.08 -4.53
211160_x_at 211160_x_at M95178 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M95178.1 /DEF=Human non-muscle alpha-actinin mRNA, complete cds. /FEA=mRNA /GEN=ACTN1 /PROD=alpha-actinin /DB_XREF=gi:178051 /UG=Hs.119000 actinin, alpha 1 /FL=gb:M95178.1 M95178 actinin, alpha 1 ACTN1 87 NM_001102 /// NM_001130004 /// NM_001130005 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034329 // cell junction assembly // traceable author statement /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0048041 // focal adhesion assembly // inferred from mutant phenotype /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051271 // negative regulation of cellular component movement // inferred from mutant phenotype /// 0051764 // actin crosslink formation // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031143 // pseudopodium // traceable author statement /// 0042995 // cell projection // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017166 // vinculin binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation 100.45 438.68 2.41 0.05 0.08 -4.53
211345_x_at 211345_x_at AF119850 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF119850.1 /DEF=Homo sapiens PRO1608 mRNA, complete cds. /FEA=mRNA /PROD=PRO1608 /DB_XREF=gi:7770136 /UG=Hs.2186 eukaryotic translation elongation factor 1 gamma /FL=gb:AF119850.1 AF119850 eukaryotic translation elongation factor 1 gamma /// microRNA 3654 EEF1G /// MIR3654 1937 /// 100500804 NM_001404 /// NR_037427 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -582.22 3208.24 -2.40 0.05 0.08 -4.53
200689_x_at 200689_x_at NM_001404 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001404.1 /DEF=Homo sapiens eukaryotic translation elongation factor 1 gamma (EEF1G), mRNA. /FEA=mRNA /GEN=EEF1G /PROD=eukaryotic translation elongation factor 1gamma /DB_XREF=gi:4503480 /UG=Hs.2186 eukaryotic translation elongation factor 1 gamma /FL=gb:BC000384.1 gb:BC004189.1 gb:BC004215.1 gb:NM_001404.1 NM_001404 eukaryotic translation elongation factor 1 gamma /// microRNA 3654 EEF1G /// MIR3654 1937 /// 100500804 NM_001404 /// NR_037427 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -558.93 3091.44 -2.40 0.05 0.08 -4.53
209135_at 209135_at AF289489 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF289489.1 /DEF=Homo sapiens aspartyl beta-hydroxylase 2.8 kb transcript mRNA, complete cds; alternatively spliced. /FEA=mRNA /PROD=aspartyl beta-hydroxylase 2.8 kb transcript /DB_XREF=gi:11878115 /UG=Hs.283664 aspartate beta-hydroxylase /FL=gb:AF289489.1 AF289489 aspartate beta-hydroxylase ASPH 444 NM_001164750 /// NM_001164751 /// NM_001164752 /// NM_001164753 /// NM_001164754 /// NM_001164755 /// NM_001164756 /// NM_004318 /// NM_020164 /// NM_032466 /// NM_032467 /// NM_032468 /// XM_005251235 /// XM_005251236 /// XM_005251238 /// XM_005251239 /// XM_005251240 /// XM_005251241 /// XM_005251242 /// XM_005251243 /// XM_005251244 /// XM_005251246 /// XM_005251247 /// XM_005251248 /// XM_005251249 /// XM_005251250 /// XM_006716448 /// XM_006716449 0005513 // detection of calcium ion // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007389 // pattern specification process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from direct assay /// 0010649 // regulation of cell communication by electrical coupling // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // traceable author statement /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred from sequence or structural similarity /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // traceable author statement /// 0018193 // peptidyl-amino acid modification // inferred from electronic annotation /// 0031585 // regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from direct assay /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0032237 // activation of store-operated calcium channel activity // inferred from direct assay /// 0033198 // response to ATP // inferred from direct assay /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0042264 // peptidyl-aspartic acid hydroxylation // inferred from electronic annotation /// 0045862 // positive regulation of proteolysis // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // inferred from direct assay /// 0071277 // cellular response to calcium ion // inferred from direct assay /// 0090316 // positive regulation of intracellular protein transport // inferred from direct assay /// 0097202 // activation of cysteine-type endopeptidase activity // inferred from direct assay /// 1901879 // regulation of protein depolymerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0014701 // junctional sarcoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0032541 // cortical endoplasmic reticulum // inferred from direct assay /// 0033017 // sarcoplasmic reticulum membrane // traceable author statement /// 0033018 // sarcoplasmic reticulum lumen // traceable author statement /// 0034704 // calcium channel complex // traceable author statement 0004597 // peptide-aspartate beta-dioxygenase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0044325 // ion channel binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 56.43 164.46 2.40 0.05 0.08 -4.53
203037_s_at 203037_s_at NM_014751 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014751.1 /DEF=Homo sapiens KIAA0429 gene product (KIAA0429), mRNA. /FEA=mRNA /GEN=KIAA0429 /PROD=KIAA0429 gene product /DB_XREF=gi:7662113 /UG=Hs.77694 KIAA0429 gene product /FL=gb:AB007889.1 gb:NM_014751.1 NM_014751 metastasis suppressor 1 MTSS1 9788 NM_001282971 /// NM_001282974 /// NM_014751 /// XM_005251111 /// XM_005251113 /// XM_005251118 /// XM_006716700 /// XM_006716701 /// XM_006716702 /// XM_006716703 /// XM_006716704 /// XM_006716705 /// XM_006716706 /// XM_006716707 0006928 // cellular component movement // non-traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0030035 // microspike assembly // non-traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030041 // actin filament polymerization // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0061333 // renal tubule morphogenesis // inferred from sequence or structural similarity /// 0071498 // cellular response to fluid shear stress // inferred from sequence or structural similarity /// 0072102 // glomerulus morphogenesis // inferred from sequence or structural similarity /// 0072160 // nephron tubule epithelial cell differentiation // inferred from sequence or structural similarity /// 2001013 // epithelial cell proliferation involved in renal tubule morphogenesis // inferred from sequence or structural similarity 0001726 // ruffle // non-traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030139 // endocytic vesicle // traceable author statement 0003779 // actin binding // inferred from electronic annotation /// 0003785 // actin monomer binding // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction -72.70 290.35 -2.40 0.05 0.08 -4.53
212243_at 212243_at BE645501 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE645501 /FEA=EST /DB_XREF=gi:9969812 /DB_XREF=est:7e71d06.x1 /CLONE=IMAGE:3287915 /UG=Hs.6283 DKFZP586F1918 protein BE645501 GRINL1A complex locus 1 /// polymerase (RNA) II (DNA directed) polypeptide M GCOM1 /// POLR2M 81488 /// 145781 NM_001018090 /// NM_001018091 /// NM_001018095 /// NM_001018096 /// NM_001018099 /// NM_001018102 /// NM_001285900 /// NM_015532 /// NR_027390 /// NR_104367 /// NR_104368 /// NR_104369 /// NR_104370 /// NR_104371 0032774 // RNA biosynthetic process // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from sequence or structural similarity /// 0051685 // maintenance of ER location // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from sequence or structural similarity /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from sequence or structural similarity /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -37.40 136.75 -2.40 0.05 0.08 -4.53
220890_s_at 220890_s_at NM_016355 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016355.1 /DEF=Homo sapiens hqp0256 protein (LOC51202), mRNA. /FEA=mRNA /GEN=LOC51202 /PROD=hqp0256 protein /DB_XREF=gi:10047107 /UG=Hs.284288 hqp0256 protein /FL=gb:NM_016355.1 gb:AF078843.1 NM_016355 apolipoprotein L domain containing 1 /// DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 APOLD1 /// DDX47 51202 /// 81575 NM_001130415 /// NM_016355 /// NM_030817 /// NM_201224 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from mutant phenotype /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 0016070 // RNA metabolic process // non-traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042118 // endothelial cell activation // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0045601 // regulation of endothelial cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // non-traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 76.20 496.95 2.40 0.05 0.08 -4.53
222212_s_at 222212_s_at AK001105 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001105.1 /DEF=Homo sapiens cDNA FLJ10243 fis, clone HEMBB1000631, weakly similar to LONGEVITY-ASSURANCE PROTEIN 1. /FEA=mRNA /DB_XREF=gi:7022160 /UG=Hs.285976 tumor metastasis-suppressor AK001105 ceramide synthase 2 CERS2 29956 NM_013384 /// NM_022075 /// NM_181746 /// XM_005245107 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // inferred from electronic annotation 58.70 282.55 2.40 0.05 0.08 -4.53
210927_x_at 210927_x_at BC004239 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004239.1 /DEF=Homo sapiens, jumping translocation breakpoint, clone MGC:10274, mRNA, complete cds. /FEA=mRNA /PROD=jumping translocation breakpoint /DB_XREF=gi:13278986 /UG=Hs.323093 Homo sapiens, jumping translocation breakpoint, clone MGC:10274, mRNA, complete cds /FL=gb:BC004239.1 BC004239 jumping translocation breakpoint JTB 10899 NM_006694 0000910 // cytokinesis // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay 0019901 // protein kinase binding // inferred from direct assay 87.30 885.10 2.40 0.05 0.08 -4.53
221732_at 221732_at AK026161 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026161.1 /DEF=Homo sapiens cDNA: FLJ22508 fis, clone HRC11772. /FEA=mRNA /DB_XREF=gi:10438922 /UG=Hs.8859 Homo sapiens, Similar to RIKEN cDNA 5830420C20 gene, clone IMAGE:3633379, mRNA, partial cds AK026161 calcium activated nucleotidase 1 CANT1 124583 NM_001159772 /// NM_001159773 /// NM_138793 /// XM_005257020 /// XM_005257021 /// XM_005257022 /// XM_006721682 /// XM_006721683 /// XR_243633 0007165 // signal transduction // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0030166 // proteoglycan biosynthetic process // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016462 // pyrophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0045134 // uridine-diphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 72.27 141.26 2.40 0.05 0.08 -4.53
201593_s_at 201593_s_at AV716798 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV716798 /FEA=EST /DB_XREF=gi:10813950 /DB_XREF=est:AV716798 /CLONE=DCBAKB02 /UG=Hs.6375 uncharacterized hypothalamus protein HT010 /FL=gb:AF220184.1 gb:NM_018471.1 AV716798 zinc finger CCCH-type containing 15 ZC3H15 55854 NM_018471 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -58.68 405.64 -2.40 0.05 0.08 -4.53
218585_s_at 218585_s_at NM_016448 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016448.1 /DEF=Homo sapiens L2DTL protein (L2DTL), mRNA. /FEA=mRNA /GEN=L2DTL /PROD=L2DTL protein /DB_XREF=gi:7705575 /UG=Hs.126774 L2DTL protein /FL=gb:AF195765.1 gb:NM_016448.1 NM_016448 denticleless E3 ubiquitin protein ligase homolog (Drosophila) DTL 51514 NM_001286229 /// NM_001286230 /// NM_016448 0000209 // protein polyubiquitination // inferred from direct assay /// 0000209 // protein polyubiquitination // traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0009411 // response to UV // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019985 // translesion synthesis // inferred from direct assay /// 0031572 // G2 DNA damage checkpoint // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031464 // Cul4A-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0031465 // Cul4B-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 37.23 80.04 2.40 0.05 0.08 -4.53
202882_x_at 202882_x_at NM_016167 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016167.2 /DEF=Homo sapiens retinoic acid repressible protein (RARG-1), mRNA. /FEA=mRNA /GEN=RARG-1 /PROD=retinoic acid repressible protein /DB_XREF=gi:13569842 /UG=Hs.106346 retinoic acid repressible protein /FL=gb:AF172066.2 gb:NM_016167.2 NM_016167 nucleolar protein 7, 27kDa NOL7 51406 NM_016167 /// XM_005249173 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay -43.88 378.54 -2.39 0.05 0.08 -4.53
201932_at 201932_at NM_006369 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006369.1 /DEF=Homo sapiens MUF1 protein (MUF1), mRNA. /FEA=mRNA /GEN=MUF1 /PROD=MUF1 protein /DB_XREF=gi:5453747 /UG=Hs.172210 MUF1 protein /FL=gb:BC004953.1 gb:NM_006369.1 NM_006369 leucine rich repeat containing 41 LRRC41 10489 NM_006369 /// XM_005270376 0016567 // protein ubiquitination // inferred from electronic annotation 0016020 // membrane // inferred from direct assay 27.52 131.36 2.39 0.05 0.08 -4.53
207157_s_at 207157_s_at NM_005274 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005274.1 /DEF=Homo sapiens guanine nucleotide binding protein (G protein), gamma 5 (GNG5), mRNA. /FEA=mRNA /GEN=GNG5 /PROD=guanine nucleotide binding protein (G protein),gamma 5 /DB_XREF=gi:4885286 /UG=Hs.5322 guanine nucleotide binding protein (G protein), gamma 5 /FL=gb:NM_005274.1 NM_005274 guanine nucleotide binding protein (G protein), gamma 5 GNG5 2787 NM_005274 0006112 // energy reserve metabolic process // traceable author statement /// 0006184 // GTP catabolic process // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // non-traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement 0005834 // heterotrimeric G-protein complex // non-traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003924 // GTPase activity // non-traceable author statement /// 0004871 // signal transducer activity // non-traceable author statement /// 0030165 // PDZ domain binding // inferred from direct assay 176.40 926.73 2.39 0.05 0.08 -4.53
202136_at 202136_at BE250417 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE250417 /FEA=EST /DB_XREF=gi:9120528 /DB_XREF=est:600943460T1 /CLONE=IMAGE:2959935 /UG=Hs.301449 adenovirus 5 E1A binding protein /FL=gb:NM_006624.1 BE250417 zinc finger, MYND-type containing 11 ZMYND11 10771 NM_001202464 /// NM_001202465 /// NM_001202466 /// NM_001202467 /// NM_001202468 /// NM_006624 /// NM_212479 /// XM_005252359 /// XM_005252360 /// XM_005252361 /// XM_005252362 /// XM_005252363 /// XM_006717376 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0034243 // regulation of transcription elongation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0046329 // negative regulation of JNK cascade // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0035064 // methylated histone binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -101.17 459.24 -2.39 0.05 0.08 -4.53
208834_x_at 208834_x_at BC001865 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001865.1 /DEF=Homo sapiens, Similar to cadherin 1, type 1, E-cadherin (epithelial), clone MGC:1151, mRNA, complete cds. /FEA=mRNA /PROD=Similar to cadherin 1, type 1, E-cadherin(epithelial) /DB_XREF=gi:12804838 /UG=Hs.194657 cadherin 1, type 1, E-cadherin (epithelial) /FL=gb:BC001865.1 BC001865 ribosomal protein L23a /// small nucleolar RNA, C/D box 42A RPL23A /// SNORD42A 6147 /// 26809 NM_000984 /// NR_000014 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031932 // TORC2 complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -1215.20 5435.57 -2.39 0.05 0.08 -4.53
212658_at 212658_at N66633 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N66633 /FEA=EST /DB_XREF=gi:1218758 /DB_XREF=est:yy70f02.s1 /CLONE=IMAGE:278907 /UG=Hs.79299 lipoma HMGIC fusion partner-like 2 N66633 lipoma HMGIC fusion partner-like 2 LHFPL2 10184 NM_005779 /// XM_006714515 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -49.73 164.99 -2.39 0.05 0.08 -4.53
217827_s_at 217827_s_at NM_016630 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016630.2 /DEF=Homo sapiens acid cluster protein 33 (ACP33), mRNA. /FEA=mRNA /GEN=ACP33 /PROD=acid cluster protein 33 /DB_XREF=gi:13699804 /UG=Hs.71475 acid cluster protein 33 /FL=gb:BC000244.1 gb:NM_016630.2 gb:AF208861.1 NM_016630 spastic paraplegia 21 (autosomal recessive, Mast syndrome) SPG21 51324 NM_001127889 /// NM_001127890 /// NM_016630 /// XM_005254436 /// XM_005254437 /// XM_006720564 0008219 // cell death // inferred from electronic annotation /// 0050851 // antigen receptor-mediated signaling pathway // inferred by curator 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // inferred from direct assay 0042609 // CD4 receptor binding // inferred from physical interaction -63.02 457.91 -2.38 0.05 0.08 -4.53
203213_at 203213_at AL524035 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL524035 /FEA=EST /DB_XREF=gi:12787528 /DB_XREF=est:AL524035 /CLONE=CS0DC003YN06 (3 prime) /UG=Hs.184572 cell division cycle 2, G1 to S and G2 to M /FL=gb:NM_001786.1 AL524035 cyclin-dependent kinase 1 CDK1 983 NM_001130829 /// NM_001170406 /// NM_001170407 /// NM_001786 /// NM_033379 /// XM_005270303 /// XM_006718082 /// XM_006718083 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0000226 // microtubule cytoskeleton organization // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007095 // mitotic G2 DNA damage checkpoint // inferred from electronic annotation /// 0007098 // centrosome cycle // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007344 // pronuclear fusion // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007569 // cell aging // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0014038 // regulation of Schwann cell differentiation // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014075 // response to amine // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // traceable author statement /// 0016572 // histone phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0034501 // protein localization to kinetochore // inferred from direct assay /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045995 // regulation of embryonic development // traceable author statement /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048678 // response to axon injury // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0035173 // histone kinase activity // inferred from electronic annotation 54.05 208.90 2.38 0.05 0.08 -4.53
218238_at 218238_at NM_012341 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012341.1 /DEF=Homo sapiens GTP-binding protein (NGB), mRNA. /FEA=mRNA /GEN=NGB /PROD=GTP-binding protein /DB_XREF=gi:6912531 /UG=Hs.215766 GTP-binding protein /FL=gb:AF325353.1 gb:AF120334.1 gb:NM_012341.1 NM_012341 GTP binding protein 4 GTPBP4 23560 NM_012341 /// XM_006717437 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006184 // GTP catabolic process // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0015684 // ferrous iron transport // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0033342 // negative regulation of collagen binding // inferred from mutant phenotype /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 59.77 242.04 2.38 0.05 0.08 -4.53
202162_s_at 202162_s_at AI769416 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI769416 /FEA=EST /DB_XREF=gi:5235925 /DB_XREF=est:wj13f08.x1 /CLONE=IMAGE:2402727 /UG=Hs.26703 CCR4-NOT transcription complex, subunit 8 /FL=gb:AF053318.1 gb:NM_004779.1 gb:AL122045.1 gb:AF180476.1 AI769416 CCR4-NOT transcription complex, subunit 8 CNOT8 9337 NM_004779 /// XM_005268526 /// XM_005268527 /// XM_005268528 /// XM_006714807 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0035195 // gene silencing by miRNA // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from direct assay /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0030014 // CCR4-NOT complex // inferred from direct assay 0000175 // 3'-5'-exoribonuclease activity // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004535 // poly(A)-specific ribonuclease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -45.28 124.46 -2.38 0.05 0.08 -4.53
204769_s_at 204769_s_at M74447 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M74447.1 /DEF=Human PSF-2 mRNA, complete cds. /FEA=mRNA /GEN=PSF-2 /DB_XREF=gi:188505 /UG=Hs.502 ATP-binding cassette, sub-family B (MDRTAP), member 3 /FL=gb:BC002751.1 gb:M74447.1 gb:Z22935.1 gb:Z22936.1 gb:NM_000544.2 M74447 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) TAP2 6891 NM_000544 /// NM_001290043 /// NM_018833 0001916 // positive regulation of T cell mediated cytotoxicity // /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // not recorded /// 0002485 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent // not recorded /// 0002489 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent // inferred from mutant phenotype /// 0002591 // positive regulation of antigen processing and presentation of peptide antigen via MHC class I // not recorded /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006952 // defense response // traceable author statement /// 0006968 // cellular defense response // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // inferred from electronic annotation /// 0015833 // peptide transport // traceable author statement /// 0015833 // peptide transport // /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019060 // intracellular transport of viral protein in host cell // inferred from mutant phenotype /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // inferred from direct assay /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // inferred from mutant phenotype /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0046967 // cytosol to ER transport // inferred from mutant phenotype /// 0046968 // peptide antigen transport // inferred from direct assay /// 0046968 // peptide antigen transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // not recorded 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from direct assay /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0042825 // TAP complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0015197 // peptide transporter activity // inferred from genetic interaction /// 0015421 // oligopeptide-transporting ATPase activity // /// 0015433 // peptide antigen-transporting ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0023029 // MHC class Ib protein binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // /// 0042605 // peptide antigen binding // /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0046978 // TAP1 binding // inferred from physical interaction /// 0046979 // TAP2 binding // /// 0046980 // tapasin binding // inferred from sequence or structural similarity -24.27 65.91 -2.38 0.05 0.08 -4.53
216570_x_at 216570_x_at AL096829 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL096829 /DEF=Human DNA sequence from clone RP4-595K12 on chromosome 1p31.2-31.3 Contains a pseudogene similar to 60S RPL29 (ribosomal protein L29 (cell surface heparin binding protein HIP)), a chromosome 1 specific mRNA (KIAA0499), a novel mRNA (KIAA0433), EST... /FEA=CDS /DB_XREF=gi:6634461 /UG=Hs.302120 Human DNA sequence from clone RP4-595K12 on chromosome 1p31.2-31.3 Contains a pseudogene similar to 60S RPL29 (ribosomal protein L29 (cell surface heparin binding protein HIP)), a chromosome 1 specific mRNA (KIAA0499), a novel mRNA (KIAA0433), ESTs, STSs, AL096829 RP4-595K12.1 -36.27 403.71 -2.37 0.05 0.08 -4.53
209063_x_at 209063_x_at BF248165 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF248165 /FEA=EST /DB_XREF=gi:11164389 /DB_XREF=est:601859364F1 /CLONE=IMAGE:4069886 /UG=Hs.109643 polyadenylate binding protein-interacting protein 1 /FL=gb:AL136920.1 BF248165 poly(A) binding protein interacting protein 1 PAIP1 10605 NM_006451 /// NM_182789 /// NM_183323 /// XM_005248230 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from direct assay /// 0048255 // mRNA stabilization // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008494 // translation activator activity // inferred from direct assay -48.90 314.45 -2.37 0.05 0.08 -4.53
216397_s_at 216397_s_at AK024840 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024840.1 /DEF=Homo sapiens cDNA: FLJ21187 fis, clone CAS11730. /FEA=mRNA /DB_XREF=gi:10437246 /UG=Hs.30736 KIAA0124 protein AK024840 block of proliferation 1 /// microRNA 7112 BOP1 /// MIR7112 23246 /// 102465906 NM_015201 /// NR_107057 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from mutant phenotype /// 0000466 // maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0042254 // ribosome biogenesis // inferred by curator /// 0042254 // ribosome biogenesis // non-traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030687 // preribosome, large subunit precursor // inferred from electronic annotation /// 0070545 // PeBoW complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0043021 // ribonucleoprotein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 26.85 74.62 2.37 0.05 0.08 -4.53
201004_at 201004_at NM_006280 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006280.1 /DEF=Homo sapiens signal sequence receptor, delta (translocon-associated protein delta) (SSR4), mRNA. /FEA=mRNA /GEN=SSR4 /PROD=signal sequence receptor, delta /DB_XREF=gi:5454089 /UG=Hs.102135 signal sequence receptor, delta (translocon-associated protein delta) /FL=gb:BC003371.1 gb:NM_006280.1 NM_006280 signal sequence receptor, delta SSR4 6748 NM_001204526 /// NM_001204527 /// NM_006280 /// NR_037927 0006412 // translation // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006886 // intracellular protein transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // non-traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // non-traceable author statement -127.90 672.10 -2.37 0.05 0.08 -4.53
210845_s_at 210845_s_at U08839 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U08839.1 /DEF=Human urokinase-type plasminogen activator receptor mRNA, complete cds. /FEA=mRNA /PROD=urokinase-type plasminogen activator receptor /DB_XREF=gi:517197 /UG=Hs.179657 plasminogen activator, urokinase receptor /FL=gb:U08839.1 U08839 plasminogen activator, urokinase receptor PLAUR 5329 NM_001005376 /// NM_001005377 /// NM_002659 /// XM_005258988 /// XM_005258989 /// XM_005258990 /// XM_006723241 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006501 // C-terminal protein lipidation // traceable author statement /// 0006928 // cellular component movement // non-traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016255 // attachment of GPI anchor to protein // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030162 // regulation of proteolysis // non-traceable author statement /// 0038195 // urokinase plasminogen activator signaling pathway // non-traceable author statement /// 0042730 // fibrinolysis // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0019898 // extrinsic component of membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0004872 // receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030377 // urokinase plasminogen activator receptor activity // non-traceable author statement 60.00 330.85 2.37 0.05 0.08 -4.53
201358_s_at 201358_s_at NM_016451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016451.1 /DEF=Homo sapiens coatomer protein complex, subunit beta (COPB), mRNA. /FEA=mRNA /GEN=COPB /PROD=coatomer protein complex, subunit beta /DB_XREF=gi:7705368 /UG=Hs.3059 coatomer protein complex, subunit beta /FL=gb:AF084457.1 gb:AL136593.1 gb:NM_016451.1 NM_016451 coatomer protein complex, subunit beta 1 COPB1 1315 NM_001144061 /// NM_001144062 /// NM_016451 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005798 // Golgi-associated vesicle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 75.90 885.40 2.37 0.05 0.08 -4.53
213583_x_at 213583_x_at BE964125 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE964125 /FEA=EST /DB_XREF=gi:11767593 /DB_XREF=est:601657809R1 /CLONE=IMAGE:3875978 /UG=Hs.288036 tRNA isopentenylpyrophosphate transferase BE964125 eukaryotic translation elongation factor 1 alpha 1 EEF1A1 1915 NM_001402 /// NM_001403 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -544.10 3660.02 -2.36 0.05 0.08 -4.53
214543_x_at 214543_x_at AF142421 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF142421.1 /DEF=Homo sapiens QUAKING isoform 5 (QUAKING) mRNA, complete cds. /FEA=CDS /GEN=QUAKING /PROD=QUAKING isoform 5 /DB_XREF=gi:7542354 /UG=Hs.15020 homolog of mouse quaking QKI (KH domain RNA binding protein) /FL=gb:AF142420.1 gb:AF142421.1 AF142421 QKI, KH domain containing, RNA binding QKI 9444 NM_006775 /// NM_206853 /// NM_206854 /// NM_206855 /// XM_005267224 /// XR_245557 /// XR_427977 /// XR_427978 0001570 // vasculogenesis // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0042759 // long-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -61.18 224.04 -2.36 0.05 0.08 -4.53
204338_s_at 204338_s_at NM_005613 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005613.2 /DEF=Homo sapiens regulator of G-protein signalling 4 (RGS4), mRNA. /FEA=mRNA /GEN=RGS4 /PROD=regulator of G-protein signaling 4 /DB_XREF=gi:11184227 /UG=Hs.227571 regulator of G-protein signalling 4 /FL=gb:NM_005613.2 gb:BC000737.1 NM_005613 regulator of G-protein signaling 4 RGS4 5999 NM_001102445 /// NM_001113380 /// NM_001113381 /// NM_005613 0000188 // inactivation of MAPK activity // traceable author statement /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0001965 // G-protein alpha-subunit binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005516 // calmodulin binding // traceable author statement 35.82 64.24 2.36 0.05 0.08 -4.53
219261_at 219261_at NM_024067 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024067.1 /DEF=Homo sapiens hypothetical protein MGC2718 (MGC2718), mRNA. /FEA=mRNA /GEN=MGC2718 /PROD=hypothetical protein MGC2718 /DB_XREF=gi:13129045 /UG=Hs.81057 hypothetical protein MGC2718 /FL=gb:BC001076.1 gb:NM_024067.1 gb:BC005121.1 NM_024067 chromosome 7 open reading frame 26 C7orf26 79034 NM_024067 /// XM_005249845 /// XR_242101 35.78 51.14 2.36 0.05 0.08 -4.53
211941_s_at 211941_s_at BE969671 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE969671 /FEA=EST /DB_XREF=gi:10582604 /DB_XREF=est:601679610F1 /CLONE=IMAGE:3949779 /UG=Hs.80423 prostatic binding protein BE969671 phosphatidylethanolamine binding protein 1 PEBP1 5037 NM_002567 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008429 // phosphatidylethanolamine binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 107.58 633.16 2.36 0.05 0.08 -4.53
217853_at 217853_at NM_022748 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022748.1 /DEF=Homo sapiens hypothetical protein FLJ13732 similar to tensin (FLJ13732), mRNA. /FEA=mRNA /GEN=FLJ13732 /PROD=hypothetical protein FLJ13732 similar to tensin /DB_XREF=gi:12232408 /UG=Hs.12210 hypothetical protein FLJ13732 similar to tensin /FL=gb:NM_022748.1 NM_022748 tensin 3 TNS3 64759 NM_022748 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 36.40 103.85 2.36 0.05 0.08 -4.53
216396_s_at 216396_s_at AF131850 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF131850.1 /DEF=Homo sapiens clone 24988 mRNA sequence. /FEA=mRNA /DB_XREF=gi:4406694 /UG=Hs.286027 etoposide-induced mRNA AF131850 etoposide induced 2.4 EI24 9538 NM_001007277 /// NM_001290135 /// NM_004879 /// NR_110769 /// NR_110770 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 85.12 493.61 2.35 0.05 0.08 -4.53
218775_s_at 218775_s_at NM_024949 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024949.1 /DEF=Homo sapiens hypothetical protein FLJ22029 (FLJ22029), mRNA. /FEA=mRNA /GEN=FLJ22029 /PROD=hypothetical protein FLJ22029 /DB_XREF=gi:13376432 /UG=Hs.285243 hypothetical protein FLJ22029 /FL=gb:NM_024949.1 NM_024949 claudin 22 /// WW and C2 domain containing 2 CLDN22 /// WWC2 53842 /// 80014 NM_001111319 /// NM_024949 /// XM_006714312 /// XM_006714313 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity /// 0034329 // cell junction assembly // traceable author statement /// 0035331 // negative regulation of hippo signaling // inferred from direct assay /// 0045216 // cell-cell junction organization // traceable author statement /// 0046621 // negative regulation of organ growth // inferred from mutant phenotype /// 0070830 // tight junction assembly // traceable author statement 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from direct assay /// 0042802 // identical protein binding // inferred from sequence or structural similarity -33.08 52.16 -2.35 0.05 0.08 -4.53
217917_s_at 217917_s_at NM_014183 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014183.1 /DEF=Homo sapiens HSPC162 protein (HSPC162), mRNA. /FEA=mRNA /GEN=HSPC162 /PROD=HSPC162 protein /DB_XREF=gi:7661821 /UG=Hs.100002 HSPC162 protein /FL=gb:BC002481.1 gb:AY026513.1 gb:AF161511.1 gb:NM_014183.1 gb:AF165516.1 NM_014183 dynein, light chain, roadblock-type 1 DYNLRB1 83658 NM_001281727 /// NM_001281728 /// NM_001281729 /// NM_014183 /// NM_177953 /// NR_104032 /// XM_005260568 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // non-traceable author statement /// 0007632 // visual behavior // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005868 // cytoplasmic dynein complex // non-traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation -85.02 530.46 -2.35 0.05 0.08 -4.53
206298_at 206298_at NM_021226 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021226.1 /DEF=Homo sapiens hypothetical protein from clones 23549 and 23762 (LOC58504), mRNA. /FEA=mRNA /GEN=LOC58504 /PROD=hypothetical protein from clones 23549 and23762 /DB_XREF=gi:10864038 /UG=Hs.87241 hypothetical protein from clones 23549 and 23762 /FL=gb:NM_021226.1 gb:U90908.1 NM_021226 Rho GTPase activating protein 22 ARHGAP22 58504 NM_001256024 /// NM_001256025 /// NM_001256026 /// NM_001256027 /// NM_021226 /// NR_045675 /// XM_005270014 /// XM_006717934 0001525 // angiogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation -32.25 99.08 -2.35 0.05 0.08 -4.53
201066_at 201066_at NM_001916 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001916.1 /DEF=Homo sapiens cytochrome c-1 (CYC1), mRNA. /FEA=mRNA /GEN=CYC1 /PROD=cytochrome c-1 /DB_XREF=gi:4503184 /UG=Hs.289271 cytochrome c-1 /FL=gb:BC001006.1 gb:NM_001916.1 NM_001916 cytochrome c-1 CYC1 1537 NM_001916 0022904 // respiratory electron transport chain // traceable author statement /// 0033762 // response to glucagon // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0045155 // electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 46.30 244.18 2.35 0.05 0.08 -4.53
212869_x_at 212869_x_at AI721229 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI721229 /FEA=EST /DB_XREF=gi:5038485 /DB_XREF=est:as68c10.x1 /CLONE=IMAGE:2333874 /UG=Hs.326456 hypothetical protein FLJ20030 AI721229 uncharacterized LOC101928826 /// tumor protein, translationally-controlled 1 LOC101928826 /// TPT1 7178 /// 101928826 NM_001286272 /// NM_001286273 /// NM_003295 /// XR_242670 /// XR_250536 /// XR_252641 0006816 // calcium ion transport // inferred by curator /// 0006874 // cellular calcium ion homeostasis // inferred by curator /// 0009615 // response to virus // inferred from expression pattern /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype /// 2000384 // negative regulation of ectoderm development // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005771 // multivesicular body // inferred from direct assay /// 0045298 // tubulin complex // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -1525.05 5627.60 -2.34 0.05 0.08 -4.53
209288_s_at 209288_s_at AL136842 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136842.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434A0530 (from clone DKFZp434A0530); complete cds. /FEA=mRNA /GEN=DKFZp434A0530 /PROD=hypothetical protein /DB_XREF=gi:6807668 /UG=Hs.260024 Cdc42 effector protein 3 /FL=gb:AF094521.1 gb:AF104857.1 gb:NM_006449.1 gb:AF164118.1 gb:AL136842.1 AL136842 CDC42 effector protein (Rho GTPase binding) 3 CDC42EP3 10602 NM_001270436 /// NM_001270437 /// NM_001270438 /// NM_006449 0007165 // signal transduction // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005519 // cytoskeletal regulatory protein binding // traceable author statement 47.95 216.00 2.34 0.05 0.08 -4.53
208966_x_at 208966_x_at AF208043 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF208043.1 /DEF=Homo sapiens IFI16b (IFI16b) mRNA, complete cds. /FEA=mRNA /GEN=IFI16b /PROD=IFI16b /DB_XREF=gi:6644296 /UG=Hs.155530 interferon, gamma-inducible protein 16 /FL=gb:AF208043.1 AF208043 interferon, gamma-inducible protein 16 IFI16 3428 NM_001206567 /// NM_005531 /// XM_005245127 /// XM_006711290 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001819 // positive regulation of cytokine production // traceable author statement /// 0002218 // activation of innate immune response // inferred from direct assay /// 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0009615 // response to virus // non-traceable author statement /// 0010506 // regulation of autophagy // inferred from expression pattern /// 0030097 // hemopoiesis // non-traceable author statement /// 0030099 // myeloid cell differentiation // non-traceable author statement /// 0030224 // monocyte differentiation // inferred from direct assay /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032731 // positive regulation of interleukin-1 beta production // inferred from direct assay /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045824 // negative regulation of innate immune response // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from mutant phenotype /// 0071479 // cellular response to ionizing radiation // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype /// 0097202 // activation of cysteine-type endopeptidase activity // inferred from mutant phenotype /// 2000117 // negative regulation of cysteine-type endopeptidase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -133.55 492.82 -2.34 0.05 0.09 -4.53
202399_s_at 202399_s_at NM_005829 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005829.1 /DEF=Homo sapiens adaptor-related protein complex 3, sigma 2 subunit (AP3S2), mRNA. /FEA=mRNA /GEN=AP3S2 /PROD=adaptor-related protein complex 3, sigma 2subunit /DB_XREF=gi:5031580 /UG=Hs.154782 adaptor-related protein complex 3, sigma 2 subunit /FL=gb:BC002785.1 gb:NM_005829.1 NM_005829 adaptor-related protein complex 3, sigma 2 subunit /// C15orf38-AP3S2 readthrough AP3S2 /// C15orf38-AP3S2 10239 /// 100526783 NM_001199058 /// NM_005829 /// NR_023361 /// NR_037582 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0033058 // directional locomotion // inferred from mutant phenotype /// 0048490 // anterograde synaptic vesicle transport // inferred from sequence or structural similarity /// 0051126 // negative regulation of actin nucleation // inferred from direct assay /// 2000393 // negative regulation of lamellipodium morphogenesis // inferred from mutant phenotype 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030117 // membrane coat // inferred from electronic annotation /// 0030123 // AP-3 adaptor complex // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0008565 // protein transporter activity // inferred from electronic annotation -29.67 173.64 -2.34 0.05 0.09 -4.53
200793_s_at 200793_s_at NM_001098 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001098.1 /DEF=Homo sapiens aconitase 2, mitochondrial (ACO2), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=ACO2 /PROD=aconitase 2 /DB_XREF=gi:4501866 /UG=Hs.300463 aconitase 2, mitochondrial /FL=gb:U80040.1 gb:NM_001098.1 NM_001098 aconitase 2, mitochondrial ACO2 50 NM_001098 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006101 // citrate metabolic process // inferred from direct assay /// 0006102 // isocitrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0003994 // aconitate hydratase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051538 // 3 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation -53.75 200.25 -2.34 0.05 0.09 -4.53
203972_s_at 203972_s_at AB035307 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB035307.1 /DEF=Homo sapiens mRNA for Pex3p, complete cds. /FEA=mRNA /GEN=PEX3 /PROD=Pex3p /DB_XREF=gi:8926848 /UG=Hs.7277 peroxisomal biogenesis factor 3 /FL=gb:NM_003630.1 gb:AB035307.1 AB035307 peroxisomal biogenesis factor 3 PEX3 8504 NM_003630 0007031 // peroxisome organization // inferred from mutant phenotype /// 0016557 // peroxisome membrane biogenesis // inferred from electronic annotation /// 0045046 // protein import into peroxisome membrane // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from mutant phenotype /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // traceable author statement /// 0005779 // integral component of peroxisomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032994 // protein-lipid complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from direct assay 26.05 81.67 2.34 0.05 0.09 -4.53
218104_at 218104_at NM_017746 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017746.1 /DEF=Homo sapiens hypothetical protein FLJ20287 (FLJ20287), mRNA. /FEA=mRNA /GEN=FLJ20287 /PROD=hypothetical protein FLJ20287 /DB_XREF=gi:8923268 /UG=Hs.26369 hypothetical protein FLJ20287 /FL=gb:NM_017746.1 NM_017746 testis expressed 10 TEX10 54881 NM_001161584 /// NM_017746 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0071339 // MLL1 complex // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 24.93 152.06 2.34 0.05 0.09 -4.53
202511_s_at 202511_s_at AK001899 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001899.1 /DEF=Homo sapiens cDNA FLJ11037 fis, clone PLACE1004316, highly similar to H.sapiens mRNA for apoptosis specific protein. /FEA=mRNA /DB_XREF=gi:7023451 /UG=Hs.11171 APG5 (autophagy 5, S. cerevisiae)-like /FL=gb:NM_004849.1 AK001899 autophagy related 5 ATG5 9474 NM_001286106 /// NM_001286107 /// NM_001286108 /// NM_001286111 /// NM_004849 /// NR_104402 /// NR_104403 0000045 // autophagic vacuole assembly // not recorded /// 0000045 // autophagic vacuole assembly // inferred from sequence or structural similarity /// 0000422 // mitochondrion degradation // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002739 // regulation of cytokine secretion involved in immune response // inferred from electronic annotation /// 0006501 // C-terminal protein lipidation // not recorded /// 0006914 // autophagy // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0009620 // response to fungus // inferred from electronic annotation /// 0030435 // sporulation resulting in formation of a cellular spore // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // inferred from sequence or structural similarity /// 0044805 // late nucleophagy // not recorded /// 0045087 // innate immune response // traceable author statement /// 0048840 // otolith development // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060047 // heart contraction // inferred from electronic annotation /// 1902017 // regulation of cilium assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005930 // axoneme // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0034045 // pre-autophagosomal structure membrane // not recorded /// 0034045 // pre-autophagosomal structure membrane // inferred from sequence or structural similarity /// 0034274 // Atg12-Atg5-Atg16 complex // not recorded 0005515 // protein binding // inferred from physical interaction /// 0019776 // Atg8 ligase activity // not recorded -29.82 215.56 -2.34 0.05 0.09 -4.53
206790_s_at 206790_s_at NM_004545 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004545.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 (7kD, MNLL) (NDUFB1), mRNA. /FEA=mRNA /GEN=NDUFB1 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 1 (7kD, MNLL) /DB_XREF=gi:4758775 /UG=Hs.183435 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 (7kD, MNLL) /FL=gb:AF054181.1 gb:NM_004545.1 NM_004545 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa NDUFB1 4707 NM_004545 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 66.85 433.15 2.33 0.05 0.09 -4.53
209136_s_at 209136_s_at BG390445 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG390445 /FEA=EST /DB_XREF=gi:13283893 /DB_XREF=est:602416083F1 /CLONE=IMAGE:4524309 /UG=Hs.78829 ubiquitin specific protease 10 /FL=gb:BC000263.1 BG390445 ubiquitin specific peptidase 10 USP10 9100 NM_001272075 /// NM_005153 /// NR_073577 /// NR_073578 /// XM_006721330 /// XM_006721331 /// XM_006721332 0006281 // DNA repair // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010506 // regulation of autophagy // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from mutant phenotype /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0002039 // p53 binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // inferred from mutant phenotype /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -50.12 146.89 -2.33 0.05 0.09 -4.53
212813_at 212813_at AA149644 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA149644 /FEA=EST /DB_XREF=gi:1720445 /DB_XREF=est:zl39d08.s1 /CLONE=IMAGE:504303 /UG=Hs.55016 hypothetical protein FLJ21935 AA149644 junctional adhesion molecule 3 JAM3 83700 NM_001205329 /// NM_032801 0001525 // angiogenesis // inferred from direct assay /// 0001780 // neutrophil homeostasis // inferred from electronic annotation /// 0002250 // adaptive immune response // inferred from electronic annotation /// 0002318 // myeloid progenitor cell differentiation // inferred from electronic annotation /// 0002523 // leukocyte migration involved in inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0016477 // cell migration // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0030010 // establishment of cell polarity // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0042552 // myelination // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0090022 // regulation of neutrophil chemotaxis // inferred from direct assay /// 0090138 // regulation of actin cytoskeleton organization by cell-cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030057 // desmosome // inferred from direct assay /// 0033010 // paranodal junction // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0044291 // cell-cell contact zone // inferred from direct assay 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 67.90 461.32 2.33 0.05 0.09 -4.53
200028_s_at 200028_s_at NM_020151 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020151.1 /DEF=Homo sapiens GTT1 protein (GTT1), mRNA. /FEA=mRNA /GEN=GTT1 /PROD=GTT1 protein /DB_XREF=gi:9910251 /UG=Hs.283722 GTT1 protein /FL=gb:AF270647.1 gb:NM_020151.1 NM_020151 StAR-related lipid transfer (START) domain containing 7 STARD7 56910 NM_020151 /// NM_139267 0005739 // mitochondrion // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 79.28 539.14 2.33 0.05 0.09 -4.53
221832_s_at 221832_s_at AV741657 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV741657 /FEA=EST /DB_XREF=gi:10859238 /DB_XREF=est:AV741657 /CLONE=CBMALG01 /UG=Hs.154085 leucine zipper protein 1 AV741657 leucine zipper protein 1 LUZP1 7798 NM_001142546 /// NM_033631 0003281 // ventricular septum development // inferred from electronic annotation /// 0021503 // neural fold bending // inferred from electronic annotation /// 0060840 // artery development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 43.90 93.48 2.33 0.05 0.09 -4.53
207707_s_at 207707_s_at NM_030673 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030673.1 /DEF=Homo sapiens SEC13 (S. cerevisiae)-like 1 (SEC13L1), mRNA. /FEA=mRNA /GEN=SEC13L1 /PROD=SEC13 (S. cerevisiae)-like 1 /DB_XREF=gi:13491163 /UG=Hs.227949 SEC13 (S. cerevisiae)-like 1 /FL=gb:BC002634.1 gb:NM_030673.1 NM_030673 SEC13 homolog (S. cerevisiae) SEC13 6396 NM_001136026 /// NM_001136232 /// NM_001278946 /// NM_030673 /// NM_183352 /// XM_005265377 /// XM_005265378 /// XM_005265379 /// XM_006713286 /// XM_006713287 /// XM_006713288 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031080 // nuclear pore outer ring // inferred from direct assay /// 0031080 // nuclear pore outer ring // non-traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 118.32 552.51 2.32 0.05 0.09 -4.53
210878_s_at 210878_s_at BC001202 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001202.1 /DEF=Homo sapiens, clone MGC:3185, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:3185) /DB_XREF=gi:12654720 /UG=Hs.24125 putative zinc finger protein /FL=gb:BC001202.1 BC001202 lysine (K)-specific demethylase 3B KDM3B 51780 NM_016604 /// XM_005272018 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 33.40 169.10 2.32 0.05 0.09 -4.53
209635_at 209635_at BC003561 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003561.1 /DEF=Homo sapiens, Similar to adaptor-related protein complex 1, sigma 1 subunit, clone MGC:1929, mRNA, complete cds. /FEA=mRNA /PROD=Similar to adaptor-related protein complex 1,sigma 1 subunit /DB_XREF=gi:13097710 /UG=Hs.57600 adaptor-related protein complex 1, sigma 1 subunit /FL=gb:BC003561.1 BC003561 adaptor-related protein complex 1, sigma 1 subunit AP1S1 1174 NM_001283 /// NM_057089 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005765 // lysosomal membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030121 // AP-1 adaptor complex // traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // non-traceable author statement /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 138.43 180.64 2.32 0.05 0.09 -4.53
213738_s_at 213738_s_at AI587323 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI587323 /FEA=EST /DB_XREF=gi:4573764 /DB_XREF=est:tq04h04.x1 /CLONE=IMAGE:2207863 /UG=Hs.155101 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle AI587323 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle ATP5A1 498 NM_001001935 /// NM_001001937 /// NM_001257334 /// NM_001257335 /// NM_004046 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from sequence or structural similarity /// 0006754 // ATP biosynthetic process // inferred by curator /// 0006754 // ATP biosynthetic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator /// 0042288 // MHC class I protein binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from sequence or structural similarity /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 118.15 1601.70 2.32 0.05 0.09 -4.53
38710_at 38710_at AL096714 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL096714:Homo sapiens mRNA; cDNA DKFZp564E242 (from clone DKFZp564E242) /cds=UNKNOWN /gb=AL096714 /gi=5419847 /ug=Hs.108504 /len=1904 AL096714 uncharacterized LOC101927673 /// OTU deubiquitinase, ubiquitin aldehyde binding 1 LOC101927673 /// OTUB1 55611 /// 101927673 NM_017670 /// NR_003089 /// XR_247234 /// XR_247664 /// XR_252904 0002376 // immune system process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // inferred from direct assay /// 1901315 // negative regulation of histone H2A K63-linked ubiquitination // inferred from direct assay /// 2000780 // negative regulation of double-strand break repair // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019784 // NEDD8-specific protease activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from direct assay 51.80 344.43 2.31 0.05 0.09 -4.53
218200_s_at 218200_s_at NM_004546 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004546.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 (8kD, AGGG) (NDUFB2), mRNA. /FEA=mRNA /GEN=NDUFB2 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 2 (8kD, AGGG) /DB_XREF=gi:4758777 /UG=Hs.198272 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 (8kD, AGGG) /FL=gb:BC001168.1 gb:AF050639.1 gb:NM_004546.1 gb:AF067166.1 NM_004546 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa NDUFB2 4708 NM_004546 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 88.63 698.84 2.31 0.05 0.09 -4.53
200014_s_at 200014_s_at NM_004500 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004500.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1C2) (HNRPC), mRNA. /FEA=mRNA /GEN=HNRPC /PROD=heterogeneous nuclear ribonucleoprotein C(C1C2) /DB_XREF=gi:4758543 /UG=Hs.182447 heterogeneous nuclear ribonucleoprotein C (C1C2) /FL=gb:BC003394.1 gb:M16342.1 gb:NM_004500.1 NM_004500 heterogeneous nuclear ribonucleoprotein C (C1/C2) HNRNPC 3183 NM_001077442 /// NM_001077443 /// NM_004500 /// NM_031314 /// XM_006720124 /// XM_006720125 /// XM_006720126 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045120 // pronucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -109.08 604.21 -2.31 0.05 0.09 -4.53
206116_s_at 206116_s_at NM_000366 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000366.1 /DEF=Homo sapiens tropomyosin 1 (alpha) (TPM1), mRNA. /FEA=mRNA /GEN=TPM1 /PROD=tropomyosin 1 (alpha) /DB_XREF=gi:4507646 /UG=Hs.77899 tropomyosin 1 (alpha) /FL=gb:M19713.1 gb:NM_000366.1 NM_000366 tropomyosin 1 (alpha) TPM1 7168 NM_000366 /// NM_001018004 /// NM_001018005 /// NM_001018006 /// NM_001018007 /// NM_001018008 /// NM_001018020 /// XM_005254637 /// XM_005254638 /// XM_005254639 /// XM_005254640 /// XM_005254641 /// XM_005254643 /// XM_005254644 /// XM_005254645 /// XM_005254646 /// XM_005254647 /// XM_005254648 /// XM_005254649 /// XM_005254650 /// XM_005254651 /// XM_005254652 /// XM_005254653 /// XM_006720667 /// XM_006720668 /// XM_006720669 /// XR_429470 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003065 // positive regulation of heart rate by epinephrine // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0006937 // regulation of muscle contraction // traceable author statement /// 0007010 // cytoskeleton organization // traceable author statement /// 0008016 // regulation of heart contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from sequence or structural similarity /// 0030049 // muscle filament sliding // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0031529 // ruffle organization // inferred from sequence or structural similarity /// 0032781 // positive regulation of ATPase activity // inferred from sequence or structural similarity /// 0034614 // cellular response to reactive oxygen species // inferred from expression pattern /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0045214 // sarcomere organization // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from sequence or structural similarity /// 0051496 // positive regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005862 // muscle thin filament tropomyosin // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030017 // sarcomere // traceable author statement /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032059 // bleb // inferred from mutant phenotype /// 0032587 // ruffle membrane // inferred from direct assay 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003779 // actin binding // traceable author statement /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0008092 // cytoskeletal protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // traceable author statement -80.55 603.48 -2.31 0.05 0.09 -4.53
209517_s_at 209517_s_at AB020982 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB020982.1 /DEF=Homo sapiens ASH2L mRNA, complete cds, similar to Drosophila ash2 sequence. /FEA=mRNA /GEN=ASH2L /DB_XREF=gi:4417209 /UG=Hs.6856 ash2 (absent, small, or homeotic, Drosophila, homolog)-like /FL=gb:AF056718.1 gb:AB020982.1 gb:NM_004674.1 AB020982 ash2 (absent, small, or homeotic)-like (Drosophila) ASH2L 9070 NM_001105214 /// NM_001261832 /// NM_001282272 /// NM_004674 /// XM_005273682 /// XM_005273683 /// XM_006716412 /// XM_006716413 0006351 // transcription, DNA-templated // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030097 // hemopoiesis // non-traceable author statement /// 0032259 // methylation // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051568 // histone H3-K4 methylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0035097 // histone methyltransferase complex // inferred from direct assay /// 0035097 // histone methyltransferase complex // inferred from physical interaction /// 0048188 // Set1C/COMPASS complex // inferred from direct assay /// 0071339 // MLL1 complex // inferred from electronic annotation 0003677 // DNA binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 56.07 313.44 2.31 0.05 0.09 -4.53
218381_s_at 218381_s_at NM_007279 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_007279.1 /DEF=Homo sapiens U2 small nuclear ribonucleoprotein auxiliary factor (65kD) (U2AF65), mRNA. /FEA=mRNA /GEN=U2AF65 /PROD=U2 small nuclear ribonucleoprotein auxiliaryfactor (65kD) /DB_XREF=gi:6005925 /UG=Hs.7655 U2 small nuclear ribonucleoprotein auxiliary factor (65kD) /FL=gb:NM_007279.1 NM_007279 U2 small nuclear RNA auxiliary factor 2 U2AF2 11338 NM_001012478 /// NM_007279 /// XM_006722994 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation 82.40 238.25 2.31 0.05 0.09 -4.53
206566_at 206566_at NM_003045 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003045.1 /DEF=Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 (SLC7A1), mRNA. /FEA=mRNA /GEN=SLC7A1 /PROD=solute carrier family 7 (cationic amino acidtransporter, y+ system), member 1 /DB_XREF=gi:4507046 /UG=Hs.2928 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 /FL=gb:AF078107.1 gb:NM_003045.1 NM_003045 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 SLC7A1 6541 NM_003045 /// XM_005266507 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006810 // transport // non-traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0015809 // arginine transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation -24.12 48.19 -2.31 0.05 0.09 -4.53
211978_x_at 211978_x_at AI708767 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI708767 /FEA=EST /DB_XREF=gi:4998543 /DB_XREF=est:as35e01.x1 /CLONE=IMAGE:2319192 /UG=Hs.267690 KIAA1228 protein AI708767 peptidyl-prolyl cis-trans isomerase A-like /// peptidylprolyl isomerase A (cyclophilin A) LOC101060363 /// PPIA 5478 /// 101060363 NM_021130 /// NM_203430 /// NM_203431 /// XM_003960117 /// XM_005246048 /// XM_005249791 /// XM_005275876 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0006278 // RNA-dependent DNA replication // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019061 // uncoating of virus // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019076 // viral release from host cell // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030260 // entry into host cell // traceable author statement /// 0034389 // lipid particle organization // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // traceable author statement /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0075713 // establishment of integrated proviral latency // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046790 // virion binding // non-traceable author statement /// 0051082 // unfolded protein binding // traceable author statement -1214.92 5225.94 -2.30 0.05 0.09 -4.53
202635_s_at 202635_s_at NM_005034 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005034.1 /DEF=Homo sapiens polymerase (RNA) II (DNA directed) polypeptide K (7.0kD) (POLR2K), mRNA. /FEA=mRNA /GEN=POLR2K /PROD=polymerase (RNA) II (DNA directed) polypeptide K(7.0kD) /DB_XREF=gi:4826923 /UG=Hs.150675 polymerase (RNA) II (DNA directed) polypeptide K (7.0kD) /FL=gb:BC000806.1 gb:NM_005034.1 NM_005034 polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa POLR2K 5440 NM_005034 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006356 // regulation of transcription from RNA polymerase I promoter // traceable author statement /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006361 // transcription initiation from RNA polymerase I promoter // traceable author statement /// 0006362 // transcription elongation from RNA polymerase I promoter // traceable author statement /// 0006363 // termination of RNA polymerase I transcription // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006385 // transcription elongation from RNA polymerase III promoter // traceable author statement /// 0006386 // termination of RNA polymerase III transcription // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005666 // DNA-directed RNA polymerase III complex // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // not recorded /// 0005829 // cytosol // traceable author statement 0001054 // RNA polymerase I activity // not recorded /// 0001055 // RNA polymerase II activity // not recorded /// 0001056 // RNA polymerase III activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 30.92 143.41 2.30 0.05 0.09 -4.53
200762_at 200762_at NM_001386 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001386.1 /DEF=Homo sapiens dihydropyrimidinase-like 2 (DPYSL2), mRNA. /FEA=mRNA /GEN=DPYSL2 /PROD=dihydropyrimidinase-like 2 /DB_XREF=gi:4503376 /UG=Hs.173381 dihydropyrimidinase-like 2 /FL=gb:U17279.1 gb:D78013.1 gb:U97105.1 gb:NM_001386.1 NM_001386 dihydropyrimidinase-like 2 DPYSL2 1808 NM_001197293 /// NM_001244604 /// NM_001386 0001975 // response to amphetamine // inferred from electronic annotation /// 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006208 // pyrimidine nucleobase catabolic process // inferred from electronic annotation /// 0006897 // endocytosis // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // inferred from sequence or structural similarity /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0014049 // positive regulation of glutamate secretion // inferred from electronic annotation /// 0021510 // spinal cord development // inferred from electronic annotation /// 0021772 // olfactory bulb development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation /// 0048489 // synaptic vesicle transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004157 // dihydropyrimidinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016812 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation 131.45 515.35 2.30 0.05 0.09 -4.53
200966_x_at 200966_x_at NM_000034 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000034.1 /DEF=Homo sapiens aldolase A, fructose-bisphosphate (ALDOA), mRNA. /FEA=mRNA /GEN=ALDOA /PROD=aldolase A /DB_XREF=gi:4557304 /UG=Hs.273415 aldolase A, fructose-bisphosphate /FL=gb:BC004333.1 gb:M11560.1 gb:NM_000034.1 NM_000034 aldolase A, fructose-bisphosphate ALDOA 226 NM_000034 /// NM_001127617 /// NM_001243175 /// NM_001243177 /// NM_184041 /// NM_184043 /// XM_006721109 0002576 // platelet degranulation // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006000 // fructose metabolic process // inferred from mutant phenotype /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // inferred from mutant phenotype /// 0006096 // glycolytic process // traceable author statement /// 0006754 // ATP biosynthetic process // inferred from mutant phenotype /// 0006941 // striated muscle contraction // inferred from mutant phenotype /// 0007015 // actin filament organization // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008360 // regulation of cell shape // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0046716 // muscle cell cellular homeostasis // inferred from mutant phenotype /// 0051289 // protein homotetramerization // inferred from sequence or structural similarity 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031430 // M band // inferred from electronic annotation /// 0031674 // I band // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004332 // fructose-bisphosphate aldolase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from direct assay /// 0015631 // tubulin binding // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0042802 // identical protein binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070061 // fructose binding // inferred from direct assay -489.33 1517.34 -2.30 0.05 0.09 -4.53
208616_s_at 208616_s_at U48297 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U48297.1 /DEF=Homo sapiens protein tyrosine phosphatase PTPCAAX2 (hPTPCAAX2) mRNA, complete cds. /FEA=mRNA /GEN=hPTPCAAX2 /PROD=protein tyrosine phosphatase PTPCAAX2 /DB_XREF=gi:1777756 /UG=Hs.82911 protein tyrosine phosphatase type IVA, member 2 /FL=gb:U48297.1 gb:NM_003479.1 gb:AF208850.1 U48297 protein tyrosine phosphatase type IVA, member 2 PTP4A2 8073 NM_001195100 /// NM_001195101 /// NM_003479 /// NM_080391 /// NM_080392 /// XM_005271229 /// XM_005271230 /// XM_005271231 /// XM_005271232 /// XM_006710927 /// XM_006710928 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004727 // prenylated protein tyrosine phosphatase activity // traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation -127.62 1095.46 -2.30 0.05 0.09 -4.53
203060_s_at 203060_s_at AF074331 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF074331.1 /DEF=Homo sapiens PAPS synthetase-2 (PAPSS2) mRNA, complete cds. /FEA=mRNA /GEN=PAPSS2 /PROD=PAPS synthetase-2 /DB_XREF=gi:5052074 /UG=Hs.274230 3-phosphoadenosine 5-phosphosulfate synthase 2 /FL=gb:AF150754.2 gb:AF313907.1 gb:AF091242.1 gb:NM_004670.1 gb:AF074331.1 gb:AF173365.1 AF074331 3'-phosphoadenosine 5'-phosphosulfate synthase 2 PAPSS2 9060 NM_001015880 /// NM_004670 0000103 // sulfate assimilation // inferred from electronic annotation /// 0001501 // skeletal system development // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0050428 // 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process // traceable author statement /// 0060348 // bone development // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004020 // adenylylsulfate kinase activity // inferred from electronic annotation /// 0004781 // sulfate adenylyltransferase (ATP) activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from sequence or structural similarity -106.35 393.80 -2.30 0.05 0.09 -4.53
201590_x_at 201590_x_at NM_004039 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004039.1 /DEF=Homo sapiens annexin A2 (ANXA2), mRNA. /FEA=mRNA /GEN=ANXA2 /PROD=annexin A2 /DB_XREF=gi:4757755 /UG=Hs.217493 annexin A2 /FL=gb:BC001748.1 gb:D00017.1 gb:NM_004039.1 NM_004039 annexin A2 ANXA2 302 NM_001002857 /// NM_001002858 /// NM_001136015 /// NM_004039 0001525 // angiogenesis // inferred from expression pattern /// 0001765 // membrane raft assembly // inferred from mutant phenotype /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0006900 // membrane budding // inferred from mutant phenotype /// 0007589 // body fluid secretion // inferred from electronic annotation /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // inferred from direct assay /// 0036035 // osteoclast development // inferred from direct assay /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051099 // positive regulation of binding // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0071229 // cellular response to acid // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019897 // extrinsic component of plasma membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031902 // late endosome membrane // inferred from direct assay /// 0031982 // vesicle // inferred from electronic annotation /// 0035749 // myelin sheath adaxonal region // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0044354 // macropinosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from mutant phenotype /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0044548 // S100 protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -738.58 4131.94 -2.30 0.05 0.09 -4.53
210495_x_at 210495_x_at AF130095 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF130095.1 /DEF=Homo sapiens clone FLC0562 PRO2841 mRNA, complete cds. /FEA=mRNA /PROD=PRO2841 /DB_XREF=gi:11493493 /UG=Hs.287820 fibronectin 1 /FL=gb:AF130095.1 AF130095 fibronectin 1 FN1 2335 NM_002026 /// NM_054034 /// NM_212474 /// NM_212475 /// NM_212476 /// NM_212478 /// NM_212482 /// XM_005246397 /// XM_005246398 /// XM_005246399 /// XM_005246400 /// XM_005246401 /// XM_005246402 /// XM_005246403 /// XM_005246404 /// XM_005246405 /// XM_005246406 /// XM_005246407 /// XM_005246408 /// XM_005246409 /// XM_005246410 /// XM_005246411 /// XM_005246412 /// XM_005246413 /// XM_005246414 /// XM_005246415 /// XM_005246416 /// XM_005246417 0001525 // angiogenesis // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007161 // calcium-independent cell-matrix adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009611 // response to wounding // non-traceable author statement /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0016477 // cell migration // non-traceable author statement /// 0018149 // peptide cross-linking // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0042060 // wound healing // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from direct assay /// 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0008201 // heparin binding // non-traceable author statement /// 0016504 // peptidase activator activity // inferred from electronic annotation -572.95 3542.53 -2.30 0.05 0.09 -4.53
213109_at 213109_at N25621 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N25621 /FEA=EST /DB_XREF=gi:1139969 /DB_XREF=est:yx78a01.s1 /CLONE=IMAGE:267816 /UG=Hs.170204 KIAA0551 protein /FL=gb:AF172264.1 N25621 TRAF2 and NCK interacting kinase TNIK 23043 NM_001161560 /// NM_001161561 /// NM_001161562 /// NM_001161563 /// NM_001161564 /// NM_001161565 /// NM_001161566 /// NM_015028 /// NR_027767 /// XM_006713555 0006468 // protein phosphorylation // inferred from direct assay /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007256 // activation of JNKK activity // inferred from direct assay /// 0007256 // activation of JNKK activity // inferred from mutant phenotype /// 0007399 // nervous system development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0055037 // recycling endosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 43.90 129.50 2.30 0.05 0.09 -4.53
200641_s_at 200641_s_at U28964 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U28964.1 /DEF=Homo sapiens 14-3-3 protein mRNA, complete cds. /FEA=mRNA /PROD=14-3-3 protein /DB_XREF=gi:899458 /UG=Hs.75103 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide /FL=gb:BC003623.1 gb:M86400.1 gb:NM_003406.1 gb:U28964.1 U28964 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta YWHAZ 7534 NM_001135699 /// NM_001135700 /// NM_001135701 /// NM_001135702 /// NM_003406 /// NM_145690 /// XM_005251060 /// XM_005251061 /// XM_005251062 /// XM_005251063 0002553 // histamine secretion by mast cell // inferred from electronic annotation /// 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010941 // regulation of cell death // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -189.62 992.29 -2.30 0.05 0.09 -4.53
209530_at 209530_at U07139 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U07139.1 /DEF=Human voltage-gated calcium channel beta subunit mRNA, complete cds. /FEA=mRNA /PROD=voltage-gated calcium channel beta subunit /DB_XREF=gi:463890 /UG=Hs.250712 calcium channel, voltage-dependent, beta 3 subunit /FL=gb:NM_000725.1 gb:U07139.1 U07139 calcium channel, voltage-dependent, beta 3 subunit CACNB3 784 NM_000725 /// NM_001206915 /// NM_001206916 /// NM_001206917 /// XM_005269142 /// XM_006719590 /// XM_006719591 /// XM_006719592 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0034765 // regulation of ion transmembrane transport // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0051899 // membrane depolarization // traceable author statement /// 0070588 // calcium ion transmembrane transport // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation -37.87 69.39 -2.29 0.05 0.09 -4.53
202143_s_at 202143_s_at NM_006710 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006710.1 /DEF=Homo sapiens COP9 homolog (COP9), mRNA. /FEA=mRNA /GEN=COP9 /PROD=COP9 homolog /DB_XREF=gi:5729778 /UG=Hs.75193 COP9 homolog /FL=gb:BC003090.1 gb:U51205.1 gb:NM_006710.1 NM_006710 COP9 signalosome subunit 8 COPS8 10920 NM_006710 /// NM_198189 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010388 // cullin deneddylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation -77.43 222.86 -2.29 0.05 0.09 -4.53
207821_s_at 207821_s_at NM_005607 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005607.1 /DEF=Homo sapiens PTK2 protein tyrosine kinase 2 (PTK2), mRNA. /FEA=mRNA /GEN=PTK2 /PROD=PTK2 protein tyrosine kinase 2 /DB_XREF=gi:5032000 /UG=Hs.740 PTK2 protein tyrosine kinase 2 /FL=gb:L05186.1 gb:NM_005607.1 NM_005607 protein tyrosine kinase 2 PTK2 5747 NM_001199649 /// NM_005607 /// NM_153831 /// XM_005251003 /// XM_005251004 /// XM_005251005 /// XM_005251006 /// XM_005251007 /// XM_005251008 /// XM_005251009 /// XM_005251010 /// XM_005251011 /// XM_005251012 /// XM_005251013 /// XM_005251014 /// XM_006716606 /// XM_006716607 /// XM_006716608 /// XM_006716609 /// XM_006716610 0000165 // MAPK cascade // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001525 // angiogenesis // traceable author statement /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001890 // placenta development // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0003007 // heart morphogenesis // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007172 // signal complex assembly // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // traceable author statement /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0009790 // embryo development // traceable author statement /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010594 // regulation of endothelial cell migration // traceable author statement /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from mutant phenotype /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // inferred from direct assay /// 0030010 // establishment of cell polarity // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0038007 // netrin-activated signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0040023 // establishment of nucleus localization // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // inferred from electronic annotation /// 0046621 // negative regulation of organ growth // inferred from electronic annotation /// 0046685 // response to arsenic-containing substance // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048870 // cell motility // traceable author statement /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // traceable author statement /// 0051893 // regulation of focal adhesion assembly // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0051964 // negative regulation of synapse assembly // inferred from electronic annotation /// 0060252 // positive regulation of glial cell proliferation // inferred from electronic annotation /// 0060396 // growth hormone receptor signaling pathway // inferred from direct assay /// 2000060 // positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0004672 // protein kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008432 // JUN kinase binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation -41.60 243.00 -2.29 0.05 0.09 -4.53
212923_s_at 212923_s_at AK024828 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024828.1 /DEF=Homo sapiens cDNA: FLJ21175 fis, clone CAS11071. /FEA=mRNA /DB_XREF=gi:10437233 /UG=Hs.69388 hypothetical protein FLJ20505 AK024828 PX domain containing 1 PXDC1 221749 NM_183373 /// XR_241883 0007154 // cell communication // inferred from electronic annotation 0035091 // phosphatidylinositol binding // inferred from electronic annotation 126.35 421.80 2.29 0.05 0.09 -4.53
216221_s_at 216221_s_at D87078 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D87078.2 /DEF=Homo sapiens mRNA for KIAA0235 protein, partial cds. /FEA=mRNA /GEN=KIAA0235 /PROD=KIAA0235 protein /DB_XREF=gi:6634004 /UG=Hs.6151 pumilio (Drosophila) homolog 2 D87078 pumilio RNA-binding family member 2 PUM2 23369 NM_001282752 /// NM_001282790 /// NM_001282791 /// NM_015317 /// XM_005262607 /// XM_005262609 /// XM_005262610 /// XM_006711972 /// XM_006711973 /// XM_006711974 /// XM_006711975 0006417 // regulation of translation // inferred from electronic annotation /// 0034063 // stress granule assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -37.38 336.99 -2.29 0.05 0.09 -4.53
201426_s_at 201426_s_at AI922599 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI922599 /FEA=EST /DB_XREF=gi:5658563 /DB_XREF=est:wm90b11.x1 /CLONE=IMAGE:2443197 /UG=Hs.297753 vimentin /FL=gb:BC000163.2 gb:NM_003380.1 AI922599 vimentin VIM 7431 NM_003380 /// XM_006717500 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0014002 // astrocyte development // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030049 // muscle filament sliding // traceable author statement /// 0045103 // intermediate filament-based process // inferred from electronic annotation /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0060020 // Bergmann glial cell differentiation // inferred from electronic annotation /// 0070307 // lens fiber cell development // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005882 // intermediate filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0097110 // scaffold protein binding // inferred from physical interaction -738.53 4457.64 -2.28 0.05 0.09 -4.53
219176_at 219176_at NM_024520 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024520.1 /DEF=Homo sapiens hypothetical protein FLJ22555 (FLJ22555), mRNA. /FEA=mRNA /GEN=FLJ22555 /PROD=hypothetical protein FLJ22555 /DB_XREF=gi:13375659 /UG=Hs.3592 hypothetical protein FLJ22555 /FL=gb:NM_024520.1 NM_024520 chromosome 2 open reading frame 47 C2orf47 79568 NM_024520 /// XM_005246852 /// XR_427111 0005739 // mitochondrion // inferred from electronic annotation 34.75 188.30 2.28 0.05 0.09 -4.53
208398_s_at 208398_s_at NM_004865 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004865.1 /DEF=Homo sapiens TBP-like 1 (TBPL1), mRNA. /FEA=mRNA /GEN=TBPL1 /PROD=TBP-like 1 /DB_XREF=gi:4759233 /UG=Hs.13993 TBP-like 1 /FL=gb:AF130312.1 gb:NM_004865.1 NM_004865 TBP-like 1 TBPL1 9519 NM_001253676 /// NM_004865 0001675 // acrosome assembly // inferred from electronic annotation /// 0006235 // dTTP biosynthetic process // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007289 // spermatid nucleus differentiation // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005672 // transcription factor TFIIA complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -33.92 165.76 -2.28 0.05 0.09 -4.53
210501_x_at 210501_x_at AF119846 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF119846.1 /DEF=Homo sapiens PRO1474 mRNA, complete cds. /FEA=mRNA /PROD=PRO1474 /DB_XREF=gi:7770128 /UG=Hs.324925 LATS (large tumor suppressor, Drosophila) homolog 1 /FL=gb:AF119846.1 AF119846 eukaryotic translation initiation factor 3, subunit K EIF3K 27335 NM_013234 /// XM_006723147 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from electronic annotation -63.62 652.59 -2.28 0.05 0.09 -4.53
202218_s_at 202218_s_at NM_004265 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004265.1 /DEF=Homo sapiens delta-6 fatty acid desaturase (FADSD6), mRNA. /FEA=mRNA /GEN=FADSD6 /PROD=delta-6 fatty acid desaturase /DB_XREF=gi:4758333 /UG=Hs.184641 fatty acid desaturase 2 /FL=gb:AF084559.1 gb:AF126799.1 gb:NM_004265.1 NM_004265 fatty acid desaturase 2 FADS2 9415 NM_001281501 /// NM_001281502 /// NM_004265 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // inferred from electronic annotation /// 0033559 // unsaturated fatty acid metabolic process // traceable author statement /// 0036109 // alpha-linolenic acid metabolic process // traceable author statement /// 0043651 // linoleic acid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 41.88 150.89 2.28 0.05 0.09 -4.53
201298_s_at 201298_s_at BC003398 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003398.1 /DEF=Homo sapiens, hypothetical protein FLJ10788, clone MGC:4929, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein FLJ10788 /DB_XREF=gi:13097287 /UG=Hs.196437 hypothetical protein FLJ10788 /FL=gb:AB016839.1 gb:BC003398.1 gb:NM_018221.1 BC003398 MOB kinase activator 1A MOB1A 55233 NM_018221 0035329 // hippo signaling // inferred from direct assay /// 0035329 // hippo signaling // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -57.20 194.20 -2.28 0.05 0.09 -4.53
202797_at 202797_at NM_014016 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014016.1 /DEF=Homo sapiens KIAA0851 protein (KIAA0851), mRNA. /FEA=mRNA /GEN=KIAA0851 /PROD=KIAA0851 protein /DB_XREF=gi:7662337 /UG=Hs.5867 KIAA0851 protein /FL=gb:AB020658.1 gb:AL136831.1 gb:NM_014016.1 NM_014016 SAC1 suppressor of actin mutations 1-like (yeast) SACM1L 22908 NM_014016 /// XR_427259 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046856 // phosphatidylinositol dephosphorylation // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation 0004438 // phosphatidylinositol-3-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from sequence or structural similarity /// 0034593 // phosphatidylinositol bisphosphate phosphatase activity // inferred from electronic annotation /// 0042578 // phosphoric ester hydrolase activity // inferred from electronic annotation /// 0043812 // phosphatidylinositol-4-phosphate phosphatase activity // inferred from electronic annotation 33.97 117.89 2.28 0.05 0.09 -4.53
208988_at 208988_at BE675843 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE675843 /FEA=EST /DB_XREF=gi:10036384 /DB_XREF=est:7f17b04.x1 /CLONE=IMAGE:3294895 /UG=Hs.219614 f-box and leucine-rich repeat protein 11 /FL=gb:AF179221.1 BE675843 lysine (K)-specific demethylase 2A KDM2A 22992 NM_001256405 /// NM_012308 /// NR_027473 /// XM_006718479 /// XM_006718480 /// XM_006718481 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070544 // histone H3-K36 demethylation // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0045322 // unmethylated CpG binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation /// 0051864 // histone demethylase activity (H3-K36 specific) // inferred from electronic annotation -24.83 106.36 -2.28 0.05 0.09 -4.53
203931_s_at 203931_s_at NM_002949 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002949.1 /DEF=Homo sapiens mitochondrial ribosomal protein L12 (MRPL12), mRNA. /FEA=mRNA /GEN=MRPL12 /PROD=mitochondrial ribosomal protein L12 /DB_XREF=gi:4506672 /UG=Hs.109059 mitochondrial ribosomal protein L12 /FL=gb:BC002344.1 gb:U25041.1 gb:AF105278.1 gb:NM_002949.1 NM_002949 mitochondrial ribosomal protein L12 MRPL12 6182 NM_002949 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0000098 // sulfur amino acid catabolic process // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006390 // transcription from mitochondrial promoter // inferred from direct assay /// 0006412 // translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006835 // dicarboxylic acid transport // traceable author statement /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0055085 // transmembrane transport // traceable author statement /// 0070221 // sulfide oxidation, using sulfide:quinone oxidoreductase // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005310 // dicarboxylic acid transmembrane transporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 47.45 118.80 2.28 0.05 0.09 -4.53
210926_at 210926_at AY014272 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AY014272.1 /DEF=Homo sapiens FKSG30 (FKSG30) mRNA, complete cds. /FEA=mRNA /GEN=FKSG30 /PROD=FKSG30 /DB_XREF=gi:12408251 /UG=Hs.315492 Homo sapiens FKSG30 (FKSG30) mRNA, complete cds /FL=gb:AY014272.1 AY014272 POTE ankyrin domain family, member K, pseudogene POTEKP 440915 NM_001017421 /// NR_033885 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 53.15 119.85 2.28 0.06 0.09 -4.53
213588_x_at 213588_x_at AA838274 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA838274 /FEA=EST /DB_XREF=gi:2913073 /DB_XREF=est:oe90c01.s1 /CLONE=IMAGE:1418880 /UG=Hs.738 ribosomal protein L14 AA838274 ribosomal protein L14 RPL14 9045 NM_001034996 /// NM_003973 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -130.40 1410.15 -2.28 0.06 0.09 -4.53
214003_x_at 214003_x_at BF184532 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF184532 /FEA=EST /DB_XREF=gi:11062829 /DB_XREF=est:601842837F1 /CLONE=IMAGE:4063593 /UG=Hs.8102 ribosomal protein S20 BF184532 ribosomal protein S20 /// small nucleolar RNA, C/D box 54 RPS20 /// SNORD54 6224 /// 26795 NM_001023 /// NM_001146227 /// NR_002437 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -420.75 3156.72 -2.28 0.06 0.09 -4.53
209331_s_at 209331_s_at AA723514 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA723514 /FEA=EST /DB_XREF=gi:2741221 /DB_XREF=est:zg72g05.s1 /CLONE=IMAGE:398936 /UG=Hs.42712 MAX protein /FL=gb:BC003525.1 AA723514 MYC associated factor X MAX 4149 NM_001271068 /// NM_001271069 /// NM_002382 /// NM_145112 /// NM_145113 /// NM_145114 /// NM_145116 /// NM_197957 /// NR_073137 /// NR_073138 /// XR_429315 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0071339 // MLL1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -55.80 222.75 -2.28 0.06 0.09 -4.53
218317_x_at 218317_x_at NM_024044 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024044.1 /DEF=Homo sapiens hypothetical protein MGC5178 (MGC5178), mRNA. /FEA=mRNA /GEN=MGC5178 /PROD=hypothetical protein MGC5178 /DB_XREF=gi:13129003 /UG=Hs.326067 hypothetical protein MGC5178 /FL=gb:BC000754.1 gb:BC000803.1 gb:NM_024044.1 NM_024044 structure-specific endonuclease subunit SLX1-like /// SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae) /// SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae) LOC101929864 /// SLX1A /// SLX1B 79008 /// 548593 /// 101929864 NM_001014999 /// NM_001015000 /// NM_024044 /// NM_178044 /// XM_006726622 /// XM_006726623 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0006281 // DNA repair // inferred from mutant phenotype /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010792 // DNA double-strand break processing involved in repair via single-strand annealing // inferred from mutant phenotype /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0033557 // Slx1-Slx4 complex // inferred from direct assay 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008821 // crossover junction endodeoxyribonuclease activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017108 // 5'-flap endonuclease activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 42.87 104.19 2.28 0.06 0.09 -4.53
211764_s_at 211764_s_at BC005980 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005980.1 /DEF=Homo sapiens, ubiquitin-conjugating enzyme E2D 1 (homologous to yeast UBC45), clone MGC:14673, mRNA, complete cds. /FEA=mRNA /PROD=ubiquitin-conjugating enzyme E2D 1 (homologousto yeast UBC45) /DB_XREF=gi:13543662 /FL=gb:BC005980.1 BC005980 ubiquitin-conjugating enzyme E2D 1 UBE2D1 7321 NM_001204880 /// NM_003338 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000209 // protein polyubiquitination // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030509 // BMP signaling pathway // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 30.20 98.03 2.28 0.06 0.09 -4.53
203956_at 203956_at NM_014941 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014941.1 /DEF=Homo sapiens KIAA0852 protein (KIAA0852), mRNA. /FEA=mRNA /GEN=KIAA0852 /PROD=KIAA0852 protein /DB_XREF=gi:7662339 /UG=Hs.35276 KIAA0852 protein /FL=gb:AB020659.1 gb:NM_014941.1 NM_014941 MORC family CW-type zinc finger 2 MORC2 22880 NM_014941 /// XM_005261391 /// XM_005261392 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 48.78 109.96 2.27 0.06 0.09 -4.53
218905_at 218905_at NM_017864 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017864.1 /DEF=Homo sapiens hypothetical protein FLJ20530 (FLJ20530), mRNA. /FEA=mRNA /GEN=FLJ20530 /PROD=hypothetical protein FLJ20530 /DB_XREF=gi:8923495 /UG=Hs.279521 hypothetical protein FLJ20530 /FL=gb:NM_017864.1 NM_017864 integrator complex subunit 8 INTS8 55656 NM_017864 /// NR_073444 /// NR_073445 /// XM_006716602 /// XM_006716603 0016180 // snRNA processing // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0032039 // integrator complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 29.93 130.91 2.27 0.06 0.09 -4.53
222006_at 222006_at AI359368 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI359368 /FEA=EST /DB_XREF=gi:4110989 /DB_XREF=est:qy27h02.x1 /CLONE=IMAGE:2013267 /UG=Hs.120165 leucine zipper-EF-hand containing transmembrane protein 1 AI359368 leucine zipper-EF-hand containing transmembrane protein 1 LETM1 3954 NM_012318 /// XM_005247970 /// XM_006713884 0042407 // cristae formation // inferred from mutant phenotype 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 39.55 78.85 2.27 0.06 0.09 -4.53
209705_at 209705_at BG033764 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG033764 /FEA=EST /DB_XREF=gi:12426228 /DB_XREF=est:602302025F1 /CLONE=IMAGE:4403238 /UG=Hs.31016 putative DNA binding protein /FL=gb:AF073293.1 BG033764 metal response element binding transcription factor 2 MTF2 22823 NM_001164391 /// NM_001164392 /// NM_001164393 /// NM_007358 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007379 // segment specification // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048863 // stem cell differentiation // inferred from sequence or structural similarity /// 0061086 // negative regulation of histone H3-K27 methylation // inferred from sequence or structural similarity /// 0061087 // positive regulation of histone H3-K27 methylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0035098 // ESC/E(Z) complex // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 37.40 128.55 2.27 0.06 0.09 -4.53
220960_x_at 220960_x_at NM_000983 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000983.1 /DEF=Homo sapiens ribosomal protein L22 (RPL22), mRNA. /FEA=mRNA /GEN=RPL22 /PROD=ribosomal protein L22 /DB_XREF=gi:4506612 /UG=Hs.99914 ribosomal protein L22 /FL=gb:NM_000983.1 NM_000983 ribosomal protein L22 RPL22 6146 NM_000983 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0046632 // alpha-beta T cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -223.13 2395.54 -2.27 0.06 0.09 -4.53
200889_s_at 200889_s_at AI016620 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI016620 /FEA=EST /DB_XREF=gi:3230956 /DB_XREF=est:ov30e10.x1 /CLONE=IMAGE:1638858 /UG=Hs.250773 signal sequence receptor, alpha (translocon-associated protein alpha) /FL=gb:AF156965.1 gb:NM_003144.2 AI016620 signal sequence receptor, alpha SSR1 6745 NM_001292008 /// NM_003144 /// NR_120448 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 68.85 301.98 2.27 0.06 0.09 -4.53
217962_at 217962_at NM_018648 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018648.1 /DEF=Homo sapiens nucleolar protein family A, member 3 (HACA small nucleolar RNPs) (NOLA3), mRNA. /FEA=mRNA /GEN=NOLA3 /PROD=nucleolar protein family A, member 3 (HACAsmall nucleolar RNPs) /DB_XREF=gi:8923941 /UG=Hs.14317 nucleolar protein family A, member 3 (HACA small nucleolar RNPs) /FL=gb:AB043104.1 gb:NM_018648.1 NM_018648 NOP10 ribonucleoprotein NOP10 55505 NM_018648 0001522 // pseudouridine synthesis // non-traceable author statement /// 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005732 // small nucleolar ribonucleoprotein complex // traceable author statement /// 0015030 // Cajal body // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0072588 // box H/ACA RNP complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030515 // snoRNA binding // inferred from electronic annotation 151.80 748.12 2.27 0.06 0.09 -4.53
221935_s_at 221935_s_at AK023140 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023140.1 /DEF=Homo sapiens cDNA FLJ13078 fis, clone NT2RP3002002. /FEA=mRNA /DB_XREF=gi:10434924 /UG=Hs.5997 hypothetical protein FLJ13078 AK023140 EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase EOGT 285203 NM_001278689 /// NM_173654 /// NR_103826 /// XM_005264743 /// XM_005264744 /// XM_006713111 0006493 // protein O-linked glycosylation // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0016262 // protein N-acetylglucosaminyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 37.55 138.78 2.27 0.06 0.09 -4.53
200819_s_at 200819_s_at NM_001018 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001018.1 /DEF=Homo sapiens ribosomal protein S15 (RPS15), mRNA. /FEA=mRNA /GEN=RPS15 /PROD=ribosomal protein S15 /DB_XREF=gi:4506686 /UG=Hs.133230 ribosomal protein S15 /FL=gb:J02984.1 gb:NM_001018.1 NM_001018 ribosomal protein S15 RPS15 6209 NM_001018 0000056 // ribosomal small subunit export from nucleus // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -671.65 3356.00 -2.27 0.06 0.09 -4.53
212380_at 212380_at D43949 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D43949.1 /DEF=Human mRNA for KIAA0082 gene, partial cds. /FEA=mRNA /GEN=KIAA0082 /DB_XREF=gi:603952 /UG=Hs.154045 KIAA0082 protein D43949 cap methyltransferase 1 CMTR1 23070 NM_015050 /// XM_005248955 /// XM_006715028 0006370 // 7-methylguanosine mRNA capping // inferred from direct assay /// 0006370 // 7-methylguanosine mRNA capping // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0080009 // mRNA methylation // inferred from direct assay /// 0097309 // cap1 mRNA methylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004483 // mRNA (nucleoside-2'-O-)-methyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 29.25 84.65 2.27 0.06 0.09 -4.53
214336_s_at 214336_s_at AI621079 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI621079 /FEA=EST /DB_XREF=gi:4630205 /DB_XREF=est:ts76f11.x1 /CLONE=IMAGE:2237229 /UG=Hs.75887 coatomer protein complex, subunit alpha AI621079 coatomer protein complex, subunit alpha COPA 1314 NM_001098398 /// NM_004371 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0009451 // RNA modification // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030157 // pancreatic juice secretion // inferred from direct assay /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from direct assay /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -55.95 109.88 -2.26 0.06 0.09 -4.53
202029_x_at 202029_x_at NM_000999 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000999.1 /DEF=Homo sapiens ribosomal protein L38 (RPL38), mRNA. /FEA=mRNA /GEN=RPL38 /PROD=ribosomal protein L38 /DB_XREF=gi:4506644 /UG=Hs.2017 ribosomal protein L38 /FL=gb:BC000603.1 gb:NM_000999.1 NM_000999 ribosomal protein L38 RPL38 6169 NM_000999 /// NM_001035258 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001503 // ossification // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034463 // 90S preribosome assembly // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048318 // axial mesoderm development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0033291 // eukaryotic 80S initiation complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement -415.30 3085.38 -2.26 0.06 0.09 -4.53
201875_s_at 201875_s_at NM_024569 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024569.1 /DEF=Homo sapiens hypothetical protein FLJ21047 (FLJ21047), mRNA. /FEA=mRNA /GEN=FLJ21047 /PROD=hypothetical protein FLJ21047 /DB_XREF=gi:13375739 /UG=Hs.14891 hypothetical protein FLJ21047 /FL=gb:NM_024569.1 NM_024569 myelin protein zero-like 1 MPZL1 9019 NM_001146191 /// NM_003953 /// NM_024569 /// XM_006711614 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 31.75 118.33 2.26 0.06 0.09 -4.53
204387_x_at 204387_x_at NM_024026 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024026.1 /DEF=Homo sapiens hypothetical protein MGC3243 (MGC3243), mRNA. /FEA=mRNA /GEN=MGC3243 /PROD=hypothetical protein MGC3243 /DB_XREF=gi:13128969 /UG=Hs.182695 hypothetical protein MGC3243 /FL=gb:BC000002.1 gb:NM_024026.1 NM_024026 mitochondrial ribosomal protein L57 MRPL57 78988 NM_024026 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 32.00 64.70 2.26 0.06 0.09 -4.53
209043_at 209043_at AF033026 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF033026.1 /DEF=Homo sapiens bifunctional ATP sulfurylaseadenosine 5-phosphosulfate kinase mRNA, complete cds. /FEA=mRNA /PROD=bifunctional ATP sulfurylaseadenosine5-phosphosulfate kinase /DB_XREF=gi:3378100 /UG=Hs.3833 3-phosphoadenosine 5-phosphosulfate synthase 1 /FL=gb:AF033026.1 gb:AF016496.1 gb:NM_005443.1 gb:AF105227.1 AF033026 3'-phosphoadenosine 5'-phosphosulfate synthase 1 PAPSS1 9061 NM_005443 0000103 // sulfate assimilation // inferred from electronic annotation /// 0001501 // skeletal system development // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0050428 // 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process // traceable author statement 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004020 // adenylylsulfate kinase activity // inferred from electronic annotation /// 0004781 // sulfate adenylyltransferase (ATP) activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from sequence or structural similarity 105.80 446.52 2.26 0.06 0.09 -4.53
221798_x_at 221798_x_at AI183766 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI183766 /FEA=EST /DB_XREF=gi:3734404 /DB_XREF=est:qe17g06.x1 /CLONE=IMAGE:1739290 /UG=Hs.182426 ribosomal protein S2 AI183766 RP5-882O7.1 -1207.12 5269.26 -2.26 0.06 0.09 -4.53
204838_s_at 204838_s_at NM_014381 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014381.1 /DEF=Homo sapiens mutL (E. coli) homolog 3 (MLH3), mRNA. /FEA=mRNA /GEN=MLH3 /PROD=mutL (E. coli) homolog 3 /DB_XREF=gi:7657336 /UG=Hs.279843 mutL (E. coli) homolog 3 /FL=gb:AF195657.1 gb:NM_014381.1 NM_014381 mutL homolog 3 MLH3 27030 NM_001040108 /// NM_014381 /// XM_005267531 /// XM_005267532 /// XM_005267533 /// XM_005267534 /// XM_006720116 /// XM_006720117 /// XR_245681 /// XR_429311 /// XR_429312 0006200 // ATP catabolic process // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // non-traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // non-traceable author statement /// 0007140 // male meiosis // inferred from electronic annotation /// 0007144 // female meiosis I // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation 0000793 // condensed chromosome // inferred from electronic annotation /// 0000795 // synaptonemal complex // not recorded /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005712 // chiasma // not recorded /// 0032300 // mismatch repair complex // not recorded /// 0032390 // MutLbeta complex // 0003682 // chromatin binding // inferred from electronic annotation /// 0003696 // satellite DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0019237 // centromeric DNA binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0032407 // MutSalpha complex binding // 22.68 26.74 2.26 0.06 0.09 -4.53
200774_at 200774_at BE963765 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE963765 /FEA=EST /DB_XREF=gi:11767182 /DB_XREF=est:601657412R1 /CLONE=IMAGE:3875738 /UG=Hs.76666 C9orf10 protein /FL=gb:AF214737.1 gb:NM_014612.1 BE963765 family with sequence similarity 120A FAM120A 23196 NM_001286722 /// NM_001286723 /// NM_001286724 /// NM_014612 /// XM_005251842 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 91.90 845.17 2.26 0.06 0.09 -4.53
203874_s_at 203874_s_at NM_003069 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003069.1 /DEF=Homo sapiens SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (SMARCA1), mRNA. /FEA=mRNA /GEN=SMARCA1 /PROD=SWISNF related, matrix associated, actindependent regulator of chromatin, subfamily a, member 1 /DB_XREF=gi:4507066 /UG=Hs.152292 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 /FL=gb:M88163.1 gb:NM_003069.1 NM_003069 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 SMARCA1 6594 NM_001282874 /// NM_001282875 /// NM_003069 /// NM_139035 /// XM_005262461 /// XM_005262462 /// XM_006724782 0000733 // DNA strand renaturation // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007420 // brain development // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from sequence or structural similarity /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 2000177 // regulation of neural precursor cell proliferation // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0016589 // NURF complex // inferred from direct assay /// 0090537 // CERF complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0031491 // nucleosome binding // inferred from electronic annotation /// 0036310 // annealing helicase activity // inferred from direct assay /// 0070615 // nucleosome-dependent ATPase activity // inferred from direct assay 24.50 93.47 2.26 0.06 0.09 -4.53
202621_at 202621_at NM_001571 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001571.1 /DEF=Homo sapiens interferon regulatory factor 3 (IRF3), mRNA. /FEA=mRNA /GEN=IRF3 /PROD=interferon regulatory factor 3 /DB_XREF=gi:4504724 /UG=Hs.75254 interferon regulatory factor 3 /FL=gb:NM_001571.1 NM_001571 interferon regulatory factor 3 IRF3 3661 NM_001197122 /// NM_001197123 /// NM_001197124 /// NM_001197125 /// NM_001197126 /// NM_001197127 /// NM_001197128 /// NM_001571 /// NR_045568 /// XM_006723197 /// XM_006723198 /// XM_006723199 /// XM_006723200 /// XM_006723201 /// XM_006723202 /// XR_430199 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // traceable author statement /// 0009617 // response to bacterium // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032727 // positive regulation of interferon-alpha production // inferred from sequence or structural similarity /// 0032728 // positive regulation of interferon-beta production // inferred from sequence or structural similarity /// 0032728 // positive regulation of interferon-beta production // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0039530 // MDA-5 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045351 // type I interferon biosynthetic process // inferred from electronic annotation /// 0045358 // negative regulation of interferon-beta biosynthetic process // inferred from electronic annotation /// 0050689 // negative regulation of defense response to virus by host // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from sequence or structural similarity /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060340 // positive regulation of type I interferon-mediated signaling pathway // inferred from electronic annotation /// 0071359 // cellular response to dsRNA // inferred from electronic annotation /// 0071888 // macrophage apoptotic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000975 // regulatory region DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation 31.23 99.16 2.26 0.06 0.09 -4.53
215210_s_at 215210_s_at S72422 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S72422.1 /DEF=E2k=alpha-ketoglutarate dehydrogenase complex dihydrolipoyl succinyltransferase human, fetal brain, mRNA, 2987 nt. /FEA=mRNA /GEN=E2k /PROD=alpha-ketoglutarate dehydrogenase complexdihydrolipoyl succinyltransferase /DB_XREF=gi:632883 /UG=Hs.296348 E2k S72422 dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) DLST 1743 NM_001244883 /// NM_001933 /// NR_033814 /// NR_045209 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006554 // lysine catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0033512 // L-lysine catabolic process to acetyl-CoA via saccharopine // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045252 // oxoglutarate dehydrogenase complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004149 // dihydrolipoyllysine-residue succinyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation 32.92 154.81 2.26 0.06 0.09 -4.53
214895_s_at 214895_s_at AU135154 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU135154 /FEA=EST /DB_XREF=gi:10995693 /DB_XREF=est:AU135154 /CLONE=PLACE1001348 /UG=Hs.172028 a disintegrin and metalloproteinase domain 10 AU135154 ADAM metallopeptidase domain 10 ADAM10 102 NM_001110 /// XM_005254117 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006509 // membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0007162 // negative regulation of cell adhesion // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0007267 // cell-cell signaling // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010820 // positive regulation of T cell chemotaxis // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030574 // collagen catabolic process // traceable author statement /// 0034612 // response to tumor necrosis factor // inferred from direct assay /// 0042117 // monocyte activation // inferred from mutant phenotype /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0051089 // constitutive protein ectodomain proteolysis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005798 // Golgi-associated vesicle // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097038 // perinuclear endoplasmic reticulum // inferred from direct assay /// 0097197 // tetraspanin-enriched microdomain // inferred from direct assay 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0004222 // metalloendopeptidase activity // non-traceable author statement /// 0005102 // receptor binding // non-traceable author statement /// 0005178 // integrin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // inferred from mutant phenotype /// 0008237 // metallopeptidase activity // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -28.92 102.74 -2.26 0.06 0.09 -4.53
210951_x_at 210951_x_at AF125393 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF125393.1 /DEF=Homo sapiens Rab27 isoform mRNA, complete cds. /FEA=mRNA /PROD=Rab27 isoform /DB_XREF=gi:5410356 /UG=Hs.50477 RAB27A, member RAS oncogene family /FL=gb:AF125393.1 AF125393 RAB27A, member RAS oncogene family RAB27A 5873 NM_004580 /// NM_183234 /// NM_183235 /// NM_183236 /// XM_005254576 /// XM_005254577 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006605 // protein targeting // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from mutant phenotype /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0032400 // melanosome localization // inferred from electronic annotation /// 0032402 // melanosome transport // inferred from electronic annotation /// 0043316 // cytotoxic T cell degranulation // inferred from electronic annotation /// 0043320 // natural killer cell degranulation // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045921 // positive regulation of exocytosis // inferred from mutant phenotype /// 0051875 // pigment granule localization // inferred from electronic annotation /// 0051904 // pigment granule transport // inferred from electronic annotation /// 0071985 // multivesicular body sorting pathway // inferred from mutant phenotype 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030667 // secretory granule membrane // inferred from electronic annotation /// 0032585 // multivesicular body membrane // inferred from direct assay /// 0042470 // melanosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070382 // exocytic vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0031489 // myosin V binding // inferred from electronic annotation -38.33 144.39 -2.26 0.06 0.09 -4.53
203316_s_at 203316_s_at NM_003094 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003094.1 /DEF=Homo sapiens small nuclear ribonucleoprotein polypeptide E (SNRPE), mRNA. /FEA=mRNA /GEN=SNRPE /PROD=small nuclear ribonucleoprotein polypeptide E /DB_XREF=gi:4507128 /UG=Hs.1066 small nuclear ribonucleoprotein polypeptide E /FL=gb:BC002639.1 gb:M37716.1 gb:NM_003094.1 NM_003094 small nuclear ribonucleoprotein polypeptide E SNRPE 6635 NM_003094 0000245 // spliceosomal complex assembly // non-traceable author statement /// 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0000387 // spliceosomal snRNP assembly // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008334 // histone mRNA metabolic process // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0034660 // ncRNA metabolic process // traceable author statement /// 0042633 // hair cycle // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005683 // U7 snRNP // inferred from direct assay /// 0005685 // U1 snRNP // inferred from direct assay /// 0005687 // U4 snRNP // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // non-traceable author statement /// 0034709 // methylosome // inferred from direct assay /// 0034715 // pICln-Sm protein complex // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 111.40 810.08 2.26 0.06 0.09 -4.53
200681_at 200681_at NM_006708 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006708.1 /DEF=Homo sapiens glyoxalase I (GLO1), mRNA. /FEA=mRNA /GEN=GLO1 /PROD=glyoxalase I /DB_XREF=gi:5729841 /UG=Hs.75207 glyoxalase I /FL=gb:BC001741.1 gb:L07837.1 gb:NM_006708.1 NM_006708 glyoxalase I GLO1 2739 NM_006708 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009438 // methylglyoxal metabolic process // inferred from electronic annotation /// 0030316 // osteoclast differentiation // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004462 // lactoylglutathione lyase activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 107.87 790.84 2.26 0.06 0.09 -4.53
203606_at 203606_at NM_004553 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004553.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 6 (13kD) (NADH-coenzyme Q reductase) (NDUFS6), mRNA. /FEA=mRNA /GEN=NDUFS6 /PROD=NADH dehydrogenase (ubiquinone) Fe-S protein 6(13kD) (NADH-coenzyme Q reductase) /DB_XREF=gi:4758791 /UG=Hs.49767 NADH dehydrogenase (ubiquinone) Fe-S protein 6 (13kD) (NADH-coenzyme Q reductase) /FL=gb:AF044959.1 gb:NM_004553.1 NM_004553 NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) NDUFS6 4726 NM_004553 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from electronic annotation /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061458 // reproductive system development // inferred from electronic annotation /// 0070584 // mitochondrion morphogenesis // inferred from electronic annotation /// 0072358 // cardiovascular system development // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0009055 // electron carrier activity // non-traceable author statement 79.50 334.68 2.26 0.06 0.09 -4.53
200656_s_at 200656_s_at NM_000918 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000918.1 /DEF=Homo sapiens procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55) (P4HB), mRNA. /FEA=mRNA /GEN=P4HB /PROD=procollagen-proline, 2-oxoglutarate4-dioxygenase (proline 4-hydroxylase), beta polypeptide(protein disulfide isomerase; thyroid hormone bindingprotein p55) /DB_XREF=gi:4505566 /UG=Hs.75655 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55) /FL=gb:J02783.1 gb:NM_000918.1 NM_000918 prolyl 4-hydroxylase, beta polypeptide P4HB 5034 NM_000918 0006457 // protein folding // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 1902175 // regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from mutant phenotype 0005576 // extracellular region // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase complex // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // not recorded /// 0004656 // procollagen-proline 4-dioxygenase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -93.57 765.29 -2.25 0.06 0.09 -4.53
202998_s_at 202998_s_at NM_002318 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002318.1 /DEF=Homo sapiens lysyl oxidase-like 2 (LOXL2), mRNA. /FEA=mRNA /GEN=LOXL2 /PROD=lysyl oxidase-like 2 /DB_XREF=gi:4505010 /UG=Hs.83354 lysyl oxidase-like 2 /FL=gb:BC000594.1 gb:U89942.1 gb:NM_002318.1 gb:AF117949.1 NM_002318 lysyl oxidase-like 2 LOXL2 4017 NM_002318 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0001935 // endothelial cell proliferation // inferred from mutant phenotype /// 0002040 // sprouting angiogenesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006464 // cellular protein modification process // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007568 // aging // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016570 // histone modification // inferred from direct assay /// 0018277 // protein deamination // inferred from direct assay /// 0030199 // collagen fibril organization // inferred from mutant phenotype /// 0032332 // positive regulation of chondrocyte differentiation // inferred from sequence or structural similarity /// 0043542 // endothelial cell migration // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0046688 // response to copper ion // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003682 // chromatin binding // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0004720 // protein-lysine 6-oxidase activity // inferred from direct assay /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070492 // oligosaccharide binding // inferred from direct assay -270.05 1161.40 -2.25 0.06 0.09 -4.53
208777_s_at 208777_s_at AF001212 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF001212.1 /DEF=Homo sapiens 26S proteasome subunit 9 mRNA, complete cds. /FEA=mRNA /PROD=26S proteasome subunit 9 /DB_XREF=gi:2150045 /UG=Hs.90744 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 /FL=gb:BC000437.1 gb:BC004430.1 gb:AB003102.1 gb:AF001212.1 gb:NM_002815.1 AF001212 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 PSMD11 5717 NM_001270482 /// NM_002815 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043248 // proteasome assembly // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0048863 // stem cell differentiation // inferred from mutant phenotype /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 87.70 523.90 2.25 0.06 0.09 -4.53
201443_s_at 201443_s_at AF248966 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF248966.1 /DEF=Homo sapiens HT028 mRNA, complete cds. /FEA=mRNA /PROD=HT028 /DB_XREF=gi:12005668 /UG=Hs.183434 ATPase, H+ transporting, lysosomal (vacuolar proton pump) membrane sector associated protein M8-9 /FL=gb:AF248966.1 gb:NM_005765.1 AF248966 ATPase, H+ transporting, lysosomal accessory protein 2 ATP6AP2 10159 NM_005765 0002003 // angiotensin maturation // inferred from direct assay /// 0002003 // angiotensin maturation // traceable author statement /// 0006508 // proteolysis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0021903 // rostrocaudal neural tube patterning // inferred from mutant phenotype /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0032914 // positive regulation of transforming growth factor beta1 production // inferred from direct assay /// 0043408 // regulation of MAPK cascade // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048069 // eye pigmentation // inferred from mutant phenotype /// 0060323 // head morphogenesis // inferred from mutant phenotype 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004190 // aspartic-type endopeptidase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation 86.70 531.25 2.25 0.06 0.09 -4.53
211955_at 211955_at NM_002271 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_002271.1 /DEF=Homo sapiens karyopherin (importin) beta 3 (KPNB3), mRNA. /FEA=CDS /GEN=KPNB3 /PROD=karyopherin (importin) beta 3 /DB_XREF=gi:4504908 /UG=Hs.113503 karyopherin (importin) beta 3 /FL=gb:U72761.1 gb:NM_002271.1 NM_002271 importin 5 IPO5 3843 NM_002271 /// XM_005254049 /// XM_005254052 /// XM_005254053 0006607 // NLS-bearing protein import into nucleus // inferred from sequence or structural similarity /// 0006610 // ribosomal protein import into nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042307 // positive regulation of protein import into nucleus // inferred from sequence or structural similarity /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0071230 // cellular response to amino acid stimulus // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005643 // nuclear pore // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005095 // GTPase inhibitor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay -71.25 282.38 -2.25 0.06 0.10 -4.53
211066_x_at 211066_x_at BC006439 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006439.1 /DEF=Homo sapiens, Similar to protocadherin gamma subfamily A, 5, clone MGC:13163, mRNA, complete cds. /FEA=mRNA /PROD=Similar to protocadherin gamma subfamily A, 5 /DB_XREF=gi:13623638 /FL=gb:BC006439.1 BC006439 protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 4 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 6 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 1 /// protocadherin gamma subfamily B, 2 /// protocadherin gamma subfamily B, 3 /// protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5 /// protocadherin gamma subfamily B, 6 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily C, 3 /// protocadherin gamma subfamily C, 4 /// protocadherin gamma subfamily C, 5 PCDHGA1 /// PCDHGA10 /// PCDHGA11 /// PCDHGA12 /// PCDHGA2 /// PCDHGA3 /// PCDHGA4 /// PCDHGA5 /// PCDHGA6 /// PCDHGA7 /// PCDHGA8 /// PCDHGA9 /// PCDHGB1 /// PCDHGB2 /// PCDHGB3 /// PCDHGB4 /// PCDHGB5 /// PCDHGB6 /// PCDHGB7 /// PCDHGC3 /// PCDHGC4 /// PCDHGC5 5098 /// 8641 /// 9708 /// 26025 /// 56097 /// 56098 /// 56099 /// 56100 /// 56101 /// 56102 /// 56103 /// 56104 /// 56105 /// 56106 /// 56107 /// 56108 /// 56109 /// 56110 /// 56111 /// 56112 /// 56113 /// 56114 NM_002588 /// NM_003735 /// NM_003736 /// NM_014004 /// NM_018912 /// NM_018913 /// NM_018914 /// NM_018915 /// NM_018916 /// NM_018917 /// NM_018918 /// NM_018919 /// NM_018920 /// NM_018921 /// NM_018922 /// NM_018923 /// NM_018924 /// NM_018925 /// NM_018926 /// NM_018927 /// NM_018928 /// NM_018929 /// NM_031993 /// NM_032009 /// NM_032011 /// NM_032053 /// NM_032054 /// NM_032086 /// NM_032087 /// NM_032088 /// NM_032089 /// NM_032090 /// NM_032091 /// NM_032092 /// NM_032094 /// NM_032095 /// NM_032096 /// NM_032097 /// NM_032098 /// NM_032099 /// NM_032100 /// NM_032101 /// NM_032402 /// NM_032403 /// NM_032406 /// NM_032407 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -83.60 385.07 -2.25 0.06 0.10 -4.53
208152_s_at 208152_s_at NM_004728 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004728.1 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 21 (DDX21), mRNA. /FEA=mRNA /GEN=DDX21 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 21 /DB_XREF=gi:13787208 /FL=gb:NM_004728.1 NM_004728 DEAD (Asp-Glu-Ala-Asp) box helicase 21 DDX21 9188 NM_001256910 /// NM_004728 0001649 // osteoblast differentiation // inferred from direct assay /// 0006200 // ATP catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -173.13 1030.19 -2.25 0.06 0.10 -4.53
213084_x_at 213084_x_at BF125158 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF125158 /FEA=EST /DB_XREF=gi:10964198 /DB_XREF=est:601762392F1 /CLONE=IMAGE:4025158 /UG=Hs.194657 cadherin 1, type 1, E-cadherin (epithelial) BF125158 ribosomal protein L23a /// small nucleolar RNA, C/D box 42A RPL23A /// SNORD42A 6147 /// 26809 NM_000984 /// NR_000014 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031932 // TORC2 complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -1168.40 5182.32 -2.25 0.06 0.10 -4.53
208617_s_at 208617_s_at AF208850 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF208850.1 /DEF=Homo sapiens BM-008 mRNA, complete cds. /FEA=mRNA /PROD=BM-008 /DB_XREF=gi:7582287 /UG=Hs.82911 protein tyrosine phosphatase type IVA, member 2 /FL=gb:U48297.1 gb:NM_003479.1 gb:AF208850.1 AF208850 protein tyrosine phosphatase type IVA, member 2 PTP4A2 8073 NM_001195100 /// NM_001195101 /// NM_003479 /// NM_080391 /// NM_080392 /// XM_005271229 /// XM_005271230 /// XM_005271231 /// XM_005271232 /// XM_006710927 /// XM_006710928 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004727 // prenylated protein tyrosine phosphatase activity // traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 125.85 432.25 2.25 0.06 0.10 -4.53
213394_at 213394_at AI674759 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI674759 /FEA=EST /DB_XREF=gi:4875239 /DB_XREF=est:wd20b03.x1 /CLONE=IMAGE:2328653 /UG=Hs.259729 KIAA0596 protein AI674759 mitogen-activated protein kinase binding protein 1 MAPKBP1 23005 NM_001128608 /// NM_001265611 /// NM_014994 /// NR_049761 /// NR_049762 /// XM_006720438 /// XM_006720439 0007256 // activation of JNKK activity // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation -74.20 115.75 -2.25 0.06 0.10 -4.53
202960_s_at 202960_s_at NM_000255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000255.1 /DEF=Homo sapiens methylmalonyl Coenzyme A mutase (MUT), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=MUT /PROD=methylmalonyl Coenzyme A mutase precursor /DB_XREF=gi:4557766 /UG=Hs.155212 methylmalonyl Coenzyme A mutase /FL=gb:M65131.1 gb:NM_000255.1 NM_000255 methylmalonyl CoA mutase MUT 4594 NM_000255 /// XM_005249143 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009235 // cobalamin metabolic process // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0019626 // short-chain fatty acid catabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050667 // homocysteine metabolic process // inferred from direct assay 0005739 // mitochondrion // traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004494 // methylmalonyl-CoA mutase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from electronic annotation /// 0031419 // cobalamin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0072341 // modified amino acid binding // inferred from direct assay 39.70 106.20 2.25 0.06 0.10 -4.53
202298_at 202298_at NM_004541 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004541.2 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD, MWFE) (NDUFA1), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=NDUFA1 /PROD=NADH dehydrogenase (ubiquinone) 1 alphasubcomplex, 1 /DB_XREF=gi:13699820 /UG=Hs.74823 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD, MWFE) /FL=gb:BC000266.1 gb:NM_004541.2 gb:U54993.1 NM_004541 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa NDUFA1 4694 NM_004541 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 87.48 518.49 2.25 0.06 0.10 -4.53
201168_x_at 201168_x_at NM_004309 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004309.1 /DEF=Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha (ARHGDIA), mRNA. /FEA=mRNA /GEN=ARHGDIA /PROD=Rho GDP dissociation inhibitor (GDI) alpha /DB_XREF=gi:4757767 /UG=Hs.159161 Rho GDP dissociation inhibitor (GDI) alpha /FL=gb:D13989.1 gb:M97579.1 gb:NM_004309.1 NM_004309 Rho GDP dissociation inhibitor (GDI) alpha ARHGDIA 396 NM_001185077 /// NM_001185078 /// NM_004309 0006928 // cellular component movement // traceable author statement /// 0007162 // negative regulation of cell adhesion // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050770 // regulation of axonogenesis // traceable author statement /// 0050771 // negative regulation of axonogenesis // traceable author statement /// 0050772 // positive regulation of axonogenesis // traceable author statement /// 0050790 // regulation of catalytic activity // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0071526 // semaphorin-plexin signaling pathway // inferred from sequence or structural similarity 0001772 // immunological synapse // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005094 // Rho GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 118.95 501.43 2.24 0.06 0.10 -4.53
202232_s_at 202232_s_at NM_006360 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006360.1 /DEF=Homo sapiens dendritic cell protein (GA17), mRNA. /FEA=mRNA /GEN=GA17 /PROD=dendritic cell protein /DB_XREF=gi:5453653 /UG=Hs.69469 dendritic cell protein /FL=gb:AF277183.1 gb:AF064603.1 gb:NM_006360.1 NM_006360 eukaryotic translation initiation factor 3, subunit M EIF3M 10480 NM_006360 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0002183 // cytoplasmic translational initiation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred by curator /// 0006446 // regulation of translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 62.08 312.14 2.24 0.06 0.10 -4.53
214710_s_at 214710_s_at BE407516 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE407516 /FEA=EST /DB_XREF=gi:9343966 /DB_XREF=est:601300355F1 /CLONE=IMAGE:3630517 /UG=Hs.23960 cyclin B1 BE407516 cyclin B1 CCNB1 891 NM_031966 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000236 // mitotic prometaphase // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0001556 // oocyte maturation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007080 // mitotic metaphase plate congression // inferred from mutant phenotype /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031442 // positive regulation of mRNA 3'-end processing // inferred from electronic annotation /// 0033129 // positive regulation of histone phosphorylation // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043148 // mitotic spindle stabilization // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046680 // response to DDT // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051726 // regulation of cell cycle // traceable author statement /// 0051987 // positive regulation of attachment of spindle microtubules to kinetochore // inferred from mutant phenotype /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060623 // regulation of chromosome condensation // inferred from electronic annotation /// 0071174 // mitotic spindle checkpoint // inferred from mutant phenotype /// 0071283 // cellular response to iron(III) ion // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation 0000922 // spindle pole // inferred from direct assay /// 0000942 // condensed nuclear chromosome outer kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005113 // patched binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction 62.77 251.79 2.24 0.06 0.10 -4.53
210915_x_at 210915_x_at M15564 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M15564.1 /DEF=Human T-cell receptor rearranged beta-chain V-region (V-D-J) mRNA, complete cds. /FEA=mRNA /GEN=TCRB /DB_XREF=gi:339011 /UG=Hs.303157 T cell receptor beta locus /FL=gb:M15564.1 M15564 T cell receptor beta constant 1 TRBC1 28639 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002230 // positive regulation of defense response to virus by host // inferred from direct assay /// 0002230 // positive regulation of defense response to virus by host // inferred from sequence or structural similarity /// 0002230 // positive regulation of defense response to virus by host // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from direct assay /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from sequence or structural similarity /// 0002827 // positive regulation of T-helper 1 type immune response // non-traceable author statement /// 0002827 // positive regulation of T-helper 1 type immune response // traceable author statement /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // non-traceable author statement /// 0010535 // positive regulation of activation of JAK2 kinase activity // inferred from direct assay /// 0031295 // T cell costimulation // traceable author statement /// 0032693 // negative regulation of interleukin-10 production // inferred from mutant phenotype /// 0032725 // positive regulation of granulocyte macrophage colony-stimulating factor production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // traceable author statement /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0032733 // positive regulation of interleukin-10 production // traceable author statement /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0032740 // positive regulation of interleukin-17 production // inferred from direct assay /// 0032760 // positive regulation of tumor necrosis factor production // inferred from mutant phenotype /// 0032816 // positive regulation of natural killer cell activation // inferred by curator /// 0032819 // positive regulation of natural killer cell proliferation // inferred from direct assay /// 0034105 // positive regulation of tissue remodeling // inferred by curator /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042104 // positive regulation of activated T cell proliferation // inferred from direct assay /// 0042346 // positive regulation of NF-kappaB import into nucleus // traceable author statement /// 0042510 // regulation of tyrosine phosphorylation of Stat1 protein // inferred from direct assay /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from direct assay /// 0042520 // positive regulation of tyrosine phosphorylation of Stat4 protein // inferred from direct assay /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from direct assay /// 0043382 // positive regulation of memory T cell differentiation // inferred from sequence or structural similarity /// 0043382 // positive regulation of memory T cell differentiation // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred by curator /// 0050776 // regulation of immune response // traceable author statement /// 0050829 // defense response to Gram-negative bacterium // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051135 // positive regulation of NK T cell activation // inferred by curator /// 0051135 // positive regulation of NK T cell activation // inferred from direct assay /// 0051142 // positive regulation of NK T cell proliferation // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from electronic annotation /// 2000318 // positive regulation of T-helper 17 type immune response // inferred from sequence or structural similarity /// 2000318 // positive regulation of T-helper 17 type immune response // inferred from electronic annotation /// 2000330 // positive regulation of T-helper 17 cell lineage commitment // inferred from sequence or structural similarity /// 2000330 // positive regulation of T-helper 17 cell lineage commitment // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070743 // interleukin-23 complex // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0042287 // MHC protein binding // non-traceable author statement /// 0042605 // peptide antigen binding // non-traceable author statement /// 0045519 // interleukin-23 receptor binding // inferred from direct assay /// 0045519 // interleukin-23 receptor binding // inferred from electronic annotation 34.07 92.99 2.24 0.06 0.10 -4.53
201305_x_at 201305_x_at AV712577 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV712577 /FEA=EST /DB_XREF=gi:10731883 /DB_XREF=est:AV712577 /CLONE=DCAAUH03 /UG=Hs.84264 acidic protein rich in leucines /FL=gb:U70439.1 gb:NM_006401.1 AV712577 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B ANP32B 10541 NM_006401 0006334 // nucleosome assembly // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045596 // negative regulation of cell differentiation // inferred from direct assay /// 0046827 // positive regulation of protein export from nucleus // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0042393 // histone binding // inferred from direct assay /// 0070063 // RNA polymerase binding // inferred from direct assay 60.60 252.93 2.24 0.06 0.10 -4.53
208880_s_at 208880_s_at AB019219 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB019219.1 /DEF=Homo sapiens mRNA, complete cds, similar to yeast pre-mRNA splicing factors, Prp1Zer1 and Prp6. /FEA=mRNA /DB_XREF=gi:4164165 /UG=Hs.31334 putative mitochondrial outer membrane protein import receptor /FL=gb:BC001666.1 gb:AF026031.1 gb:AB019219.1 gb:NM_012469.1 gb:AF221842.1 AB019219 pre-mRNA processing factor 6 PRPF6 24148 NM_012469 /// XM_006723769 0000244 // spliceosomal tri-snRNP complex assembly // inferred by curator /// 0000244 // spliceosomal tri-snRNP complex assembly // inferred from mutant phenotype /// 0000245 // spliceosomal complex assembly // non-traceable author statement /// 0000375 // RNA splicing, via transesterification reactions // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006403 // RNA localization // inferred from mutant phenotype /// 0008380 // RNA splicing // non-traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005682 // U5 snRNP // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0046540 // U4/U6 x U5 tri-snRNP complex // inferred from direct assay /// 0071001 // U4/U6 snRNP // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003713 // transcription coactivator activity // inferred from genetic interaction /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0043021 // ribonucleoprotein complex binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050681 // androgen receptor binding // inferred from physical interaction 27.45 104.03 2.24 0.06 0.10 -4.53
202102_s_at 202102_s_at BF718610 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF718610 /FEA=EST /DB_XREF=gi:12019523 /DB_XREF=est:KEST81 /CLONE=S90413.NIH-116-R.ab1 /UG=Hs.278675 bromodomain-containing 4 /FL=gb:NM_014299.1 BF718610 bromodomain containing 4 BRD4 23476 NM_014299 /// NM_058243 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from direct assay /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043983 // histone H4-K12 acetylation // inferred from electronic annotation /// 0044154 // histone H3-K14 acetylation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050727 // regulation of inflammatory response // inferred from direct assay /// 1901407 // regulation of phosphorylation of RNA polymerase II C-terminal domain // inferred from direct assay /// 2000002 // negative regulation of DNA damage checkpoint // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0002039 // p53 binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay -44.95 271.25 -2.24 0.06 0.10 -4.53
203012_x_at 203012_x_at NM_000984 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000984.1 /DEF=Homo sapiens ribosomal protein L23a (RPL23A), mRNA. /FEA=mRNA /GEN=RPL23A /PROD=ribosomal protein L23a /DB_XREF=gi:4506614 /UG=Hs.184776 ribosomal protein L23a /FL=gb:U37230.1 gb:NM_000984.1 NM_000984 ribosomal protein L23a RPL23A 6147 NM_000984 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031932 // TORC2 complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -1199.85 5015.75 -2.24 0.06 0.10 -4.53
218566_s_at 218566_s_at NM_012124 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012124.1 /DEF=Homo sapiens chord domain-containing protein 1 (CHP1), mRNA. /FEA=mRNA /GEN=CHP1 /PROD=chord domain-containing protein 1 /DB_XREF=gi:6912303 /UG=Hs.22857 cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 /FL=gb:AF192466.1 gb:NM_012124.1 NM_012124 cysteine and histidine-rich domain (CHORD) containing 1 CHORDC1 26973 NM_001144073 /// NM_012124 /// XR_247194 /// XR_247195 0006950 // response to stress // inferred from electronic annotation /// 0010824 // regulation of centrosome duplication // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // inferred from sequence or structural similarity /// 0080134 // regulation of response to stress // inferred from electronic annotation /// 1900034 // regulation of cellular response to heat // inferred from sequence or structural similarity /// 2000299 // negative regulation of Rho-dependent protein serine/threonine kinase activity // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from physical interaction 40.23 182.84 2.24 0.06 0.10 -4.54
209476_at 209476_at AL080080 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080080.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564E1962 (from clone DKFZp564E1962); partial cds. /FEA=mRNA /GEN=DKFZp564E1962 /PROD=hypothetical protein /DB_XREF=gi:5262491 /UG=Hs.24766 thioredoxin-related transmembrane protein /FL=gb:AB048246.1 AL080080 thioredoxin-related transmembrane protein 1 TMX1 81542 NM_030755 0006260 // DNA replication // non-traceable author statement /// 0006457 // protein folding // not recorded /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006950 // response to stress // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0008283 // cell proliferation // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0034976 // response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045321 // leukocyte activation // non-traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045927 // positive regulation of growth // non-traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // not recorded /// 0015036 // disulfide oxidoreductase activity // inferred from direct assay /// 0030612 // arsenate reductase (thioredoxin) activity // non-traceable author statement 144.60 352.50 2.24 0.06 0.10 -4.54
212800_at 212800_at AI740832 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI740832 /FEA=EST /DB_XREF=gi:5109120 /DB_XREF=est:wg24g02.x1 /CLONE=IMAGE:2366066 /UG=Hs.12311 Homo sapiens clone 23570 mRNA sequence AI740832 syntaxin 6 STX6 10228 NM_001286210 /// NM_005819 /// XM_005244824 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006906 // vesicle fusion // inferred from physical interaction /// 0007032 // endosome organization // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype /// 0048193 // Golgi vesicle transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // not recorded /// 0030136 // clathrin-coated vesicle // traceable author statement /// 0031201 // SNARE complex // inferred from direct assay /// 0032588 // trans-Golgi network membrane // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction -31.58 78.26 -2.23 0.06 0.10 -4.54
213166_x_at 213166_x_at BG332462 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG332462 /FEA=EST /DB_XREF=gi:13138900 /DB_XREF=est:602432837F1 /CLONE=IMAGE:4550505 /UG=Hs.3343 phosphoglycerate dehydrogenase BG332462 microRNA 4784 /// mitotic spindle organizing protein 2A /// mitotic spindle organizing protein 2B MIR4784 /// MZT2A /// MZT2B 80097 /// 653784 /// 100616378 NM_001085365 /// NM_025029 /// NR_039945 /// XM_005263741 /// XM_005263742 /// XM_005263792 /// XM_005263795 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005819 // spindle // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008274 // gamma-tubulin ring complex // inferred from direct assay /// 0008274 // gamma-tubulin ring complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction -44.93 376.76 -2.23 0.06 0.10 -4.54
201647_s_at 201647_s_at NM_005506 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005506.1 /DEF=Homo sapiens CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 (lysosomal integral membrane protein II) (CD36L2), mRNA. /FEA=mRNA /GEN=CD36L2 /PROD=CD36 antigen (collagen type I receptor,thrombospondin receptor)-like 2 (lysosomal integralmembrane protein II) /DB_XREF=gi:5031630 /UG=Hs.323567 CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 (lysosomal integral membrane protein II) /FL=gb:D12676.1 gb:NM_005506.1 NM_005506 scavenger receptor class B, member 2 SCARB2 950 NM_001204255 /// NM_005506 0006622 // protein targeting to lysosome // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043202 // lysosomal lumen // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction -42.03 138.31 -2.23 0.06 0.10 -4.54
214263_x_at 214263_x_at AI192781 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI192781 /FEA=EST /DB_XREF=gi:3743990 /DB_XREF=est:qe67e09.x1 /CLONE=IMAGE:1744072 /UG=Hs.79402 polymerase (RNA) II (DNA directed) polypeptide C (33kD) AI192781 polymerase (RNA) II (DNA directed) polypeptide C, 33kDa POLR2C 5432 NM_002694 /// NM_032940 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0001055 // RNA polymerase II activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 38.52 141.26 2.23 0.06 0.10 -4.54
208648_at 208648_at W60953 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W60953 /FEA=EST /DB_XREF=gi:1367731 /DB_XREF=est:zc98b12.s1 /CLONE=IMAGE:339167 /UG=Hs.106357 valosin-containing protein /FL=gb:AF100752.1 gb:NM_007126.2 W60953 valosin containing protein VCP 7415 NM_007126 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006281 // DNA repair // non-traceable author statement /// 0006302 // double-strand break repair // inferred from direct assay /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from sequence or structural similarity /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // non-traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // inferred from mutant phenotype /// 0019985 // translesion synthesis // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0030970 // retrograde protein transport, ER to cytosol // inferred from direct assay /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0045184 // establishment of protein localization // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0070842 // aggresome assembly // inferred from electronic annotation /// 1903006 // positive regulation of protein K63-linked deubiquitination // inferred from direct assay /// 1903007 // positive regulation of Lys63-specific deubiquitinase activity // inferred from direct assay 0000502 // proteasome complex // inferred from direct assay /// 0000836 // Hrd1p ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0035861 // site of double-strand break // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0031593 // polyubiquitin binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from electronic annotation /// 0035800 // deubiquitinase activator activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043531 // ADP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 1990381 // ubiquitin-specific protease binding // inferred from physical interaction 50.55 235.20 2.23 0.06 0.10 -4.54
217707_x_at 217707_x_at AI535683 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI535683 /FEA=EST /DB_XREF=gi:4449818 /DB_XREF=est:cong1.P11.A9 /UG=Hs.327729 ESTs AI535683 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 SMARCA2 6595 NM_001289396 /// NM_001289397 /// NM_001289398 /// NM_001289399 /// NM_001289400 /// NM_003070 /// NM_139045 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006200 // ATP catabolic process // traceable author statement /// 0006338 // chromatin remodeling // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0035887 // aortic smooth muscle cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay 30.20 94.85 2.23 0.06 0.10 -4.54
209341_s_at 209341_s_at AU153366 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU153366 /FEA=EST /DB_XREF=gi:11014887 /DB_XREF=est:AU153366 /CLONE=NT2RP3002988 /UG=Hs.226573 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta /FL=gb:AF031416.1 gb:AF080158.1 AU153366 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta IKBKB 3551 NM_001190720 /// NM_001190721 /// NM_001190722 /// NM_001242778 /// NM_001556 /// NR_033818 /// NR_033819 /// NR_040009 /// XM_005273490 /// XM_005273491 /// XM_005273492 /// XM_005273493 /// XM_005273494 /// XM_005273495 /// XM_005273496 /// XM_005273498 /// XM_005273499 0001782 // B cell homeostasis // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // non-traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007252 // I-kappaB phosphorylation // inferred from electronic annotation /// 0007252 // I-kappaB phosphorylation // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042501 // serine phosphorylation of STAT protein // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0071356 // cellular response to tumor necrosis factor // inferred from direct assay /// 2001259 // positive regulation of cation channel activity // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008385 // IkappaB kinase complex // traceable author statement /// 0009898 // cytoplasmic side of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0035631 // CD40 receptor complex // inferred from sequence or structural similarity /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008384 // IkappaB kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0097110 // scaffold protein binding // inferred from direct assay 55.10 98.70 2.23 0.06 0.10 -4.54
218583_s_at 218583_s_at NM_020640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020640.1 /DEF=Homo sapiens RP42 homolog (RP42), mRNA. /FEA=mRNA /GEN=RP42 /PROD=RP42 homolog /DB_XREF=gi:10190677 /UG=Hs.104613 RP42 homolog /FL=gb:NM_020640.1 gb:AF292100.2 NM_020640 DCN1, defective in cullin neddylation 1, domain containing 1 DCUN1D1 54165 NM_020640 /// XM_005247539 /// XM_005247540 0000151 // ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -41.97 140.49 -2.23 0.06 0.10 -4.54
202467_s_at 202467_s_at NM_004236 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004236.1 /DEF=Homo sapiens thyroid receptor interacting protein 15 (TRIP15), mRNA. /FEA=mRNA /GEN=TRIP15 /PROD=thyroid receptor interacting protein 15 /DB_XREF=gi:4759263 /UG=Hs.30212 thyroid receptor interacting protein 15 /FL=gb:AF084260.1 gb:NM_004236.1 gb:AF120268.1 gb:AF100762.1 NM_004236 COP9 signalosome subunit 2 COPS2 9318 NM_001143887 /// NM_004236 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010388 // cullin deneddylation // inferred from direct assay /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction -207.43 556.61 -2.23 0.06 0.10 -4.54
201070_x_at 201070_x_at AI739389 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI739389 /FEA=EST /DB_XREF=gi:5101370 /DB_XREF=est:wi29f09.x1 /CLONE=IMAGE:2391689 /UG=Hs.13453 splicing factor 3b, subunit 1, 155kD /FL=gb:AF054284.1 gb:NM_012433.1 AI739389 splicing factor 3b, subunit 1, 155kDa SF3B1 23451 NM_001005526 /// NM_012433 /// XM_005246428 /// XR_241300 /// XR_241301 /// XR_241302 0000375 // RNA splicing, via transesterification reactions // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -59.28 250.79 -2.23 0.06 0.10 -4.54
217370_x_at 217370_x_at S75762 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S75762.1 /DEF=FUS...CHOP human, myxoid liposarcoma specimens, mRNA Partial Mutant, 3 genes, 652 nt. /FEA=mRNA /GEN=FUS-CHOP /PROD=FUS-CHOP fusion protein /DB_XREF=gi:861473 /UG=Hs.99969 fusion, derived from t(12;16) malignant liposarcoma S75762 FUS RNA binding protein FUS 2521 NM_001010850 /// NM_001170634 /// NM_001170937 /// NM_004960 /// NR_028388 /// XM_005255233 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001955 // blood vessel maturation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // traceable author statement /// 0006983 // ER overload response // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032757 // positive regulation of interleukin-8 production // inferred from mutant phenotype /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0042594 // response to starvation // inferred from electronic annotation /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043620 // regulation of DNA-templated transcription in response to stress // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044324 // regulation of transcription involved in anterior/posterior axis specification // inferred from electronic annotation /// 0044324 // regulation of transcription involved in anterior/posterior axis specification // inferred from sequence or structural similarity /// 0045454 // cell redox homeostasis // inferred from direct assay /// 0045662 // negative regulation of myoblast differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from direct assay /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 2000016 // negative regulation of determination of dorsal identity // inferred from direct assay /// 2000016 // negative regulation of determination of dorsal identity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -63.05 227.08 -2.23 0.06 0.10 -4.54
203466_at 203466_at NM_002437 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002437.1 /DEF=Homo sapiens MpV17 transgene, murine homolog, glomerulosclerosis (MPV17), mRNA. /FEA=mRNA /GEN=MPV17 /PROD=MpV17 transgene, murine homolog,glomerulosclerosis /DB_XREF=gi:4505240 /UG=Hs.75659 MpV17 transgene, murine homolog, glomerulosclerosis /FL=gb:BC001115.1 gb:NM_002437.1 NM_002437 MpV17 mitochondrial inner membrane protein MPV17 4358 NM_002437 /// XM_005264326 /// XM_005264327 /// XM_006712021 0000002 // mitochondrial genome maintenance // inferred from mutant phenotype /// 0032836 // glomerular basement membrane development // inferred from sequence or structural similarity /// 0034614 // cellular response to reactive oxygen species // inferred from sequence or structural similarity /// 0042592 // homeostatic process // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from sequence or structural similarity /// 0072593 // reactive oxygen species metabolic process // inferred from electronic annotation /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 28.67 82.99 2.23 0.06 0.10 -4.54
205596_s_at 205596_s_at AY014180 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AY014180.1 /DEF=Homo sapiens E3 ubiquitin ligase Smurf2 mRNA, complete cds. /FEA=mRNA /PROD=E3 ubiquitin ligase Smurf2 /DB_XREF=gi:12408118 /UG=Hs.194477 E3 ubiquitin ligase SMURF2 /FL=gb:AF301463.1 gb:AF310676.1 gb:NM_022739.1 gb:AY014180.1 AY014180 SMAD specific E3 ubiquitin protein ligase 2 SMURF2 64750 NM_022739 /// XM_005257585 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // non-traceable author statement /// 0030509 // BMP signaling pathway // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030579 // ubiquitin-dependent SMAD protein catabolic process // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046332 // SMAD binding // inferred from physical interaction 156.87 748.79 2.23 0.06 0.10 -4.54
215813_s_at 215813_s_at S36219 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S36219.1 /DEF=prostaglandin GH synthase {alternative splicing product} human, lung fibroblast, clone HCO-T9, mRNA, 2324 nt. /FEA=mRNA /GEN=prostaglandin GH synthase, PGGHS /PROD=prostaglandin GH synthase /DB_XREF=gi:249623 /UG=Hs.88474 prostaglandin-endoperoxide synthase 1 (prostaglandin GH synthase and cyclooxygenase) S36219 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) PTGS1 5742 NM_000962 /// NM_001271164 /// NM_001271165 /// NM_001271166 /// NM_001271367 /// NM_001271368 /// NM_080591 /// XM_005252105 /// XM_006717192 0001516 // prostaglandin biosynthetic process // inferred from sequence or structural similarity /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0019371 // cyclooxygenase pathway // inferred from direct assay /// 0019371 // cyclooxygenase pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from sequence or structural similarity 0004601 // peroxidase activity // traceable author statement /// 0004666 // prostaglandin-endoperoxide synthase activity // inferred from direct assay /// 0004666 // prostaglandin-endoperoxide synthase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 27.25 141.72 2.22 0.06 0.10 -4.54
210978_s_at 210978_s_at BC002616 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002616.1 /DEF=Homo sapiens, transgelin 2, clone MGC:2989, mRNA, complete cds. /FEA=mRNA /PROD=transgelin 2 /DB_XREF=gi:12803566 /UG=Hs.75725 transgelin 2 /FL=gb:BC002616.1 BC002616 transgelin 2 TAGLN2 8407 NM_001277223 /// NM_001277224 /// NM_003564 0007517 // muscle organ development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from direct assay 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -222.83 1035.59 -2.22 0.06 0.10 -4.54
204892_x_at 204892_x_at NM_001402 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001402.1 /DEF=Homo sapiens eukaryotic translation elongation factor 1 alpha 1 (EEF1A1), mRNA. /FEA=mRNA /GEN=EEF1A1 /PROD=eukaryotic translation elongation factor 1 alpha1 /DB_XREF=gi:4503470 /UG=Hs.181165 eukaryotic translation elongation factor 1 alpha 1 /FL=gb:AF267861.1 gb:NM_001402.1 NM_001402 eukaryotic translation elongation factor 1 alpha 1 EEF1A1 1915 NM_001402 /// NM_001403 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -1538.73 5949.34 -2.22 0.06 0.10 -4.54
218025_s_at 218025_s_at NM_006117 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006117.1 /DEF=Homo sapiens peroxisomal D3,D2-enoyl-CoA isomerase (PECI), mRNA. /FEA=mRNA /GEN=PECI /PROD=peroxisomal D3,D2-enoyl-CoA isomerase /DB_XREF=gi:5174624 /UG=Hs.15250 peroxisomal D3,D2-enoyl-CoA isomerase /FL=gb:AL136642.1 gb:BC002668.1 gb:AF069301.1 gb:AF153612.1 gb:NM_006117.1 gb:AF244138.1 NM_006117 enoyl-CoA delta isomerase 2 ECI2 10455 NM_001166010 /// NM_006117 /// NM_206836 /// NR_028588 /// XM_006714957 0008152 // metabolic process // inferred from electronic annotation /// 0009062 // fatty acid catabolic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // inferred from direct assay /// 0005782 // peroxisomal matrix // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from direct assay /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation 48.55 222.38 2.22 0.06 0.10 -4.54
200675_at 200675_at NM_004356 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004356.1 /DEF=Homo sapiens CD81 antigen (target of antiproliferative antibody 1) (CD81), mRNA. /FEA=mRNA /GEN=CD81 /PROD=CD81 antigen (target of antiproliferativeantibody 1) /DB_XREF=gi:4757943 /UG=Hs.54457 CD81 antigen (target of antiproliferative antibody 1) /FL=gb:BC002978.1 gb:M33680.1 gb:NM_004356.1 NM_004356 CD81 molecule CD81 975 NM_004356 /// XM_005253260 0000187 // activation of MAPK activity // inferred from direct assay /// 0006661 // phosphatidylinositol biosynthetic process // inferred from direct assay /// 0008104 // protein localization // inferred from direct assay /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0043128 // positive regulation of 1-phosphatidylinositol 4-kinase activity // inferred from direct assay /// 0046488 // phosphatidylinositol metabolic process // inferred from direct assay /// 0046718 // viral entry into host cell // traceable author statement /// 0046813 // receptor-mediated virion attachment to host cell // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050776 // regulation of immune response // traceable author statement 0001772 // immunological synapse // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0023026 // MHC class II protein complex binding // inferred from direct assay 196.78 1139.96 2.22 0.06 0.10 -4.54
213541_s_at 213541_s_at AI351043 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI351043 /FEA=EST /DB_XREF=gi:4088249 /DB_XREF=est:qt22a08.x1 /CLONE=IMAGE:1948310 /UG=Hs.279477 ESTs AI351043 v-ets avian erythroblastosis virus E26 oncogene homolog ERG 2078 NM_001136154 /// NM_001136155 /// NM_001243428 /// NM_001243429 /// NM_001243432 /// NM_001243433 /// NM_001291391 /// NM_004449 /// NM_182918 /// NR_111949 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0030154 // cell differentiation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 62.65 435.10 2.22 0.06 0.10 -4.54
201166_s_at 201166_s_at NM_014676 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014676.1 /DEF=Homo sapiens pumilio (Drosophila) homolog 1 (PUM1), mRNA. /FEA=mRNA /GEN=PUM1 /PROD=pumilio (Drosophila) homolog 1 /DB_XREF=gi:13491165 /UG=Hs.153834 pumilio (Drosophila) homolog 1 /FL=gb:AF315592.1 gb:NM_014676.1 NM_014676 pumilio RNA-binding family member 1 PUM1 9698 NM_001020658 /// NM_014676 0006417 // regulation of translation // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -70.68 392.66 -2.22 0.06 0.10 -4.54
212063_at 212063_at BE903880 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE903880 /FEA=EST /DB_XREF=gi:10395551 /DB_XREF=est:601494678F1 /CLONE=IMAGE:3896970 /UG=Hs.323950 zinc finger protein 6 (CMPX1) BE903880 CD44 molecule (Indian blood group) CD44 960 NM_000610 /// NM_001001389 /// NM_001001390 /// NM_001001391 /// NM_001001392 /// NM_001202555 /// NM_001202556 /// NM_001202557 /// XM_005253231 /// XM_005253232 /// XM_005253233 /// XM_005253234 /// XM_005253235 /// XM_005253238 /// XM_005253239 /// XM_005253240 /// XM_006718388 /// XM_006718389 /// XM_006718390 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0002246 // wound healing involved in inflammatory response // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // non-traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // inferred from direct assay /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034116 // positive regulation of heterotypic cell-cell adhesion // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0051216 // cartilage development // inferred from expression pattern /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070487 // monocyte aggregation // inferred from mutant phenotype /// 1900625 // positive regulation of monocyte aggregation // inferred from mutant phenotype /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004415 // hyalurononglucosaminidase activity // inferred from direct assay /// 0004888 // transmembrane signaling receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0005540 // hyaluronic acid binding // inferred from direct assay /// 0005540 // hyaluronic acid binding // non-traceable author statement -36.03 227.11 -2.22 0.06 0.10 -4.54
201477_s_at 201477_s_at NM_001033 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001033.1 /DEF=Homo sapiens ribonucleotide reductase M1 polypeptide (RRM1), mRNA. /FEA=mRNA /GEN=RRM1 /PROD=ribonucleotide reductase M1 polypeptide /DB_XREF=gi:4506748 /UG=Hs.2934 ribonucleotide reductase M1 polypeptide /FL=gb:NM_001033.1 NM_001033 ribonucleotide reductase M1 RRM1 6240 NM_001033 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0006206 // pyrimidine nucleobase metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009263 // deoxyribonucleotide biosynthetic process // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation 0005635 // nuclear envelope // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005971 // ribonucleoside-diphosphate reductase complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004748 // ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from electronic annotation 65.05 327.52 2.22 0.06 0.10 -4.54
214170_x_at 214170_x_at AA669797 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA669797 /FEA=EST /DB_XREF=gi:2631296 /DB_XREF=est:ag36c01.s1 /CLONE=IMAGE:1118880 /UG=Hs.75653 fumarate hydratase AA669797 fumarate hydratase FH 2271 NM_000143 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006106 // fumarate metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0045239 // tricarboxylic acid cycle enzyme complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004333 // fumarate hydratase activity // not recorded /// 0016829 // lyase activity // inferred from electronic annotation 50.00 301.88 2.22 0.06 0.10 -4.54
201040_at 201040_at NM_002070 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002070.1 /DEF=Homo sapiens guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 (GNAI2), mRNA. /FEA=mRNA /GEN=GNAI2 /PROD=guanine nucleotide binding protein (G protein),alpha inhibiting activity polypeptide 2 /DB_XREF=gi:4504040 /UG=Hs.77269 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 /FL=gb:J03004.1 gb:NM_002070.1 NM_002070 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 GNAI2 2771 NM_001166425 /// NM_001282617 /// NM_001282618 /// NM_001282619 /// NM_001282620 /// NM_002070 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0001973 // adenosine receptor signaling pathway // not recorded /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // traceable author statement /// 0007194 // negative regulation of adenylate cyclase activity // traceable author statement /// 0007213 // G-protein coupled acetylcholine receptor signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007268 // synaptic transmission // traceable author statement /// 0007584 // response to nutrient // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0043434 // response to peptide hormone // inferred from sequence or structural similarity /// 0050805 // negative regulation of synaptic transmission // inferred from electronic annotation /// 0051301 // cell division // inferred from mutant phenotype /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001664 // G-protein coupled receptor binding // not recorded /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 86.82 544.04 2.22 0.06 0.10 -4.54
212956_at 212956_at AI348094 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI348094 /FEA=EST /DB_XREF=gi:4085300 /DB_XREF=est:qp61g12.x1 /CLONE=IMAGE:1927558 /UG=Hs.90419 KIAA0882 protein AI348094 TBC1 domain family, member 9 (with GRAM domain) TBC1D9 23158 NM_015130 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation -59.98 402.69 -2.21 0.06 0.10 -4.54
221371_at 221371_at NM_005092 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005092.1 /DEF=Homo sapiens tumor necrosis factor (ligand) superfamily, member 18 (TNFSF18), mRNA. /FEA=CDS /GEN=TNFSF18 /PROD=tumor necrosis factor (ligand) superfamily,member 18 /DB_XREF=gi:4827033 /UG=Hs.248197 tumor necrosis factor (ligand) superfamily, member 18 /FL=gb:AF117713.1 gb:AF125303.1 gb:NM_005092.1 NM_005092 tumor necrosis factor (ligand) superfamily, member 18 TNFSF18 8995 NM_005092 0002309 // T cell proliferation involved in immune response // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from sequence or structural similarity /// 0042129 // regulation of T cell proliferation // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0032813 // tumor necrosis factor receptor superfamily binding // inferred from sequence or structural similarity -86.98 217.44 -2.21 0.06 0.10 -4.54
208817_at 208817_at BC000419 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000419.1 /DEF=Homo sapiens, catechol-O-methyltransferase, clone MGC:8663, mRNA, complete cds. /FEA=mRNA /PROD=catechol-O-methyltransferase /DB_XREF=gi:12653300 /UG=Hs.240013 catechol-O-methyltransferase /FL=gb:BC000419.1 gb:M58525.1 gb:M65212.1 gb:NM_007310.1 gb:NM_000754.2 BC000419 catechol-O-methyltransferase COMT 1312 NM_000754 /// NM_001135161 /// NM_001135162 /// NM_007310 /// XM_005261229 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0009712 // catechol-containing compound metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // inferred from electronic annotation /// 0032259 // methylation // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // traceable author statement /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045963 // negative regulation of dopamine metabolic process // inferred from electronic annotation /// 0048265 // response to pain // inferred from electronic annotation /// 0048609 // multicellular organismal reproductive process // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050668 // positive regulation of homocysteine metabolic process // inferred from electronic annotation 0005622 // intracellular // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008171 // O-methyltransferase activity // traceable author statement /// 0016206 // catechol O-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -50.05 289.98 -2.21 0.06 0.10 -4.54
221255_s_at 221255_s_at NM_031298 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031298.1 /DEF=Homo sapiens hypothetical protein MGC2963 (MGC2963), mRNA. /FEA=mRNA /GEN=MGC2963 /PROD=hypothetical protein MGC2963 /DB_XREF=gi:13775219 /FL=gb:NM_031298.1 NM_031298 ER membrane protein complex subunit 6 EMC6 83460 NM_001014764 /// NM_031298 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0072546 // ER membrane protein complex // inferred from direct assay 46.07 197.69 2.21 0.06 0.10 -4.54
201720_s_at 201720_s_at AI589086 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI589086 /FEA=EST /DB_XREF=gi:4598134 /DB_XREF=est:tf80g10.x1 /CLONE=IMAGE:2105634 /UG=Hs.79356 Lysosomal-associated multispanning membrane protein-5 /FL=gb:U51240.1 gb:NM_006762.1 gb:U30498.1 AI589086 lysosomal protein transmembrane 5 LAPTM5 7805 NM_006762 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // traceable author statement /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -46.55 283.85 -2.21 0.06 0.10 -4.54
210466_s_at 210466_s_at BC002488 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002488.1 /DEF=Homo sapiens, Similar to DKFZP564M2423 protein, clone MGC:1357, mRNA, complete cds. /FEA=mRNA /PROD=Similar to DKFZP564M2423 protein /DB_XREF=gi:12803338 /UG=Hs.165998 PAI-1 mRNA-binding protein /FL=gb:BC002488.1 BC002488 SERPINE1 mRNA binding protein 1 SERBP1 26135 NM_001018067 /// NM_001018068 /// NM_001018069 /// NM_015640 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 323.25 764.73 2.21 0.06 0.10 -4.54
209489_at 209489_at N25915 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N25915 /FEA=EST /DB_XREF=gi:1140263 /DB_XREF=est:yx87a02.s1 /CLONE=IMAGE:268682 /UG=Hs.81248 CUG triplet repeat, RNA-binding protein 1 /FL=gb:AF248648.1 N25915 CUGBP, Elav-like family member 1 CELF1 10658 NM_001025596 /// NM_001172639 /// NM_001172640 /// NM_006560 /// NM_198700 /// XM_005252754 /// XM_005252755 /// XM_005252756 /// XM_006718122 /// XM_006718123 /// XM_006718124 /// XM_006718125 /// XM_006718126 /// XM_006718127 /// XM_006718128 /// XM_006718129 /// XM_006718130 /// XM_006718131 0006376 // mRNA splice site selection // inferred from sequence or structural similarity /// 0006397 // mRNA processing // traceable author statement /// 0007281 // germ cell development // non-traceable author statement /// 0007286 // spermatid development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009790 // embryo development // non-traceable author statement /// 0016246 // RNA interference // non-traceable author statement /// 0017148 // negative regulation of translation // non-traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000900 // translation repressor activity, nucleic acid binding // non-traceable author statement /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0042835 // BRE binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 58.15 156.97 2.21 0.06 0.10 -4.54
201021_s_at 201021_s_at BF697964 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF697964 /FEA=EST /DB_XREF=gi:11983372 /DB_XREF=est:602130050F1 /CLONE=IMAGE:4286556 /UG=Hs.82306 destrin (actin depolymerizing factor) /FL=gb:NM_006870.2 BF697964 destrin (actin depolymerizing factor) DSTN 11034 NM_001011546 /// NM_006870 0000910 // cytokinesis // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0008154 // actin polymerization or depolymerization // traceable author statement /// 0030042 // actin filament depolymerization // inferred from electronic annotation /// 0030836 // positive regulation of actin filament depolymerization // inferred from electronic annotation /// 0051014 // actin filament severing // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation -134.50 976.95 -2.21 0.06 0.10 -4.54
217956_s_at 217956_s_at NM_021204 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021204.1 /DEF=Homo sapiens E-1 enzyme (MASA), mRNA. /FEA=mRNA /GEN=MASA /PROD=E-1 enzyme /DB_XREF=gi:10864016 /UG=Hs.18442 E-1 enzyme /FL=gb:NM_021204.1 gb:AF113125.1 NM_021204 enolase-phosphatase 1 ENOPH1 58478 NM_001292017 /// NM_021204 /// NR_120457 /// XM_005263168 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006595 // polyamine metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from direct assay /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from direct assay /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation /// 0019509 // L-methionine salvage from methylthioadenosine // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043874 // acireductone synthase activity // inferred from direct assay /// 0043874 // acireductone synthase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 43.62 151.04 2.21 0.06 0.10 -4.54
44654_at 44654_at AI669655 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI669655:wc12a05.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2314928 /clone_end=3' /gb=AI669655 /gi=4834429 /ug=Hs.30251 /len=649 AI669655 glucose 6 phosphatase, catalytic, 3 G6PC3 92579 NM_138387 /// NR_028581 /// NR_028582 /// XM_006722179 0005975 // carbohydrate metabolic process // traceable author statement /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006796 // phosphate-containing compound metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0015760 // glucose-6-phosphate transport // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051156 // glucose 6-phosphate metabolic process // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004346 // glucose-6-phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 33.18 196.66 2.21 0.06 0.10 -4.54
220864_s_at 220864_s_at NM_015965 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015965.1 /DEF=Homo sapiens CGI-39 protein; cell death-regulatory protein GRIM19 (LOC51079), mRNA. /FEA=mRNA /GEN=LOC51079 /PROD=CGI-39 protein; cell death-regulatory proteinGRIM19 /DB_XREF=gi:7705733 /UG=Hs.279574 CGI-39 protein; cell death-regulatory protein GRIM19 /FL=gb:AF132973.1 gb:AF155662.1 gb:NM_015965.1 NM_015965 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 NDUFA13 51079 NM_015965 0006606 // protein import into nucleus // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0022904 // respiratory electron transport chain // traceable author statement /// 0030262 // apoptotic nuclear changes // inferred from direct assay /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045039 // protein import into mitochondrial inner membrane // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0072593 // reactive oxygen species metabolic process // inferred from mutant phenotype /// 0097190 // apoptotic signaling pathway // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from electronic annotation /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // non-traceable author statement /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from direct assay 60.35 323.07 2.21 0.06 0.10 -4.54
218917_s_at 218917_s_at NM_018450 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018450.1 /DEF=Homo sapiens uncharacterized bone marrow protein BM029 (BM029), mRNA. /FEA=mRNA /GEN=BM029 /PROD=uncharacterized bone marrow protein BM029 /DB_XREF=gi:8922086 /UG=Hs.8740 uncharacterized bone marrow protein BM029 /FL=gb:AF217506.1 gb:NM_018450.1 NM_018450 AT rich interactive domain 1A (SWI-like) ARID1A 8289 NM_006015 /// NM_018450 /// NM_139135 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0003205 // cardiac chamber development // inferred from electronic annotation /// 0003408 // optic cup formation involved in camera-type eye development // inferred from electronic annotation /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030520 // intracellular estrogen receptor signaling pathway // inferred from direct assay /// 0030521 // androgen receptor signaling pathway // inferred from direct assay /// 0030900 // forebrain development // inferred from electronic annotation /// 0042766 // nucleosome mobilization // traceable author statement /// 0042921 // glucocorticoid receptor signaling pathway // inferred from direct assay /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048096 // chromatin-mediated maintenance of transcription // traceable author statement /// 0060674 // placenta blood vessel development // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0090544 // BAF-type complex // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0031491 // nucleosome binding // inferred from electronic annotation -55.20 259.15 -2.21 0.06 0.10 -4.54
204937_s_at 204937_s_at NM_016325 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016325.1 /DEF=Homo sapiens zinc finger protein 274 (ZNF274), mRNA. /FEA=mRNA /GEN=ZNF274 /PROD=KRAB zinc finger protein HFB101L /DB_XREF=gi:7706506 /UG=Hs.83761 zinc finger protein 274 /FL=gb:AB029150.1 gb:NM_016325.1 NM_016325 zinc finger protein 274 ZNF274 10782 NM_001278734 /// NM_001278735 /// NM_016324 /// NM_016325 /// NM_133502 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 36.33 148.99 2.21 0.06 0.10 -4.54
201465_s_at 201465_s_at BC002646 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002646.1 /DEF=Homo sapiens, v-jun avian sarcoma virus 17 oncogene homolog, clone MGC:3338, mRNA, complete cds. /FEA=mRNA /PROD=v-jun avian sarcoma virus 17 oncogene homolog /DB_XREF=gi:12803622 /UG=Hs.78465 v-jun avian sarcoma virus 17 oncogene homolog /FL=gb:BC002646.1 gb:NM_002228.2 BC002646 jun proto-oncogene JUN 3725 NM_002228 0001525 // angiogenesis // inferred from electronic annotation /// 0001774 // microglial cell activation // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007184 // SMAD protein import into nucleus // inferred from direct assay /// 0007568 // aging // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009314 // response to radiation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035026 // leading edge cell differentiation // inferred from electronic annotation /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043922 // negative regulation by host of viral transcription // inferred from direct assay /// 0043923 // positive regulation by host of viral transcription // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred by curator /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // traceable author statement /// 0051365 // cellular response to potassium ion starvation // inferred from electronic annotation /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from direct assay /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0000228 // nuclear chromosome // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from electronic annotation 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred by curator /// 0003677 // DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred by curator /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0035497 // cAMP response element binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070412 // R-SMAD binding // inferred from physical interaction /// 0071837 // HMG box domain binding // inferred from electronic annotation -47.08 96.96 -2.21 0.06 0.10 -4.54
201717_at 201717_at NM_004927 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004927.1 /DEF=Homo sapiens chromosome 11 open reading frame 4 (C11ORF4), mRNA. /FEA=mRNA /GEN=C11ORF4 /PROD=chromosome 11 open reading frame 4 /DB_XREF=gi:4826648 /UG=Hs.75859 chromosome 11 open reading frame 4 /FL=gb:U39400.1 gb:BC004378.1 gb:NM_004927.1 NM_004927 mitochondrial ribosomal protein L49 MRPL49 740 NM_004927 /// NR_037567 /// NR_037568 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 67.38 281.94 2.20 0.06 0.10 -4.54
212734_x_at 212734_x_at AI186735 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI186735 /FEA=EST /DB_XREF=gi:3737373 /DB_XREF=est:qe79b09.x1 /CLONE=IMAGE:1745177 /UG=Hs.180842 ribosomal protein L13 AI186735 ribosomal protein L13 /// small nucleolar RNA, C/D box 68 RPL13 /// SNORD68 6137 /// 606500 NM_000977 /// NM_001243130 /// NM_001243131 /// NM_033251 /// NR_002450 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022626 // cytosolic ribosome // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -573.80 2809.53 -2.20 0.06 0.10 -4.54
201713_s_at 201713_s_at D42063 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D42063.1 /DEF=Human mRNA for RanBP2 (Ran-binding protein 2), complete cds. /FEA=mRNA /PROD=RanBP2 (Ran-binding protein 2) /DB_XREF=gi:924266 /UG=Hs.199179 RAN binding protein 2 /FL=gb:NM_006267.2 gb:D42063.1 D42063 RAN binding protein 2 RANBP2 5903 NM_006267 /// XM_005264002 /// XM_005264003 /// XM_005264004 /// XM_005264005 /// XM_005264006 /// XM_005264007 0000278 // mitotic cell cycle // traceable author statement /// 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006606 // protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0033132 // negative regulation of glucokinase activity // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046907 // intracellular transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0090526 // regulation of gluconeogenesis involved in cellular glucose homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from direct assay /// 0044615 // nuclear pore nuclear basket // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 44.53 249.96 2.20 0.06 0.10 -4.54
202522_at 202522_at AL031591 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031591 /DEF=Human DNA sequence from clone RP3-353E16 on chromosome 22q11.22-12.3 Contains the 5 part of the MN1 gene for meningioma (disrupted in balanced translocation) 1, the PITPNB gene for phosphatidylinositol transfer protein beta, ESTs, STSs, GSSs and ... /FEA=mRNA /DB_XREF=gi:6006484 /UG=Hs.7370 phosphotidylinositol transfer protein, beta /FL=gb:D30037.1 gb:NM_012399.1 AL031591 phosphatidylinositol transfer protein, beta PITPNB 23760 NM_001284277 /// NM_001284278 /// NM_012399 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015914 // phospholipid transport // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008289 // lipid binding // inferred from electronic annotation -136.65 694.67 -2.20 0.06 0.10 -4.54
215714_s_at 215714_s_at AF254822 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF254822 /DEF=Homo sapiens SMARCA4 isoform (SMARCA4) gene, complete cds, alternatively spliced /FEA=CDS_2 /DB_XREF=gi:10946127 /UG=Hs.78202 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 AF254822 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 SMARCA4 6597 NM_001128844 /// NM_001128845 /// NM_001128846 /// NM_001128847 /// NM_001128848 /// NM_001128849 /// NM_003072 /// XM_005260028 /// XM_005260030 /// XM_005260031 /// XM_005260032 /// XM_005260033 /// XM_005260034 /// XM_005260035 /// XM_006722845 /// XM_006722846 /// XM_006722847 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003407 // neural retina development // inferred from expression pattern /// 0006200 // ATP catabolic process // inferred from genetic interaction /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred by curator /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007070 // negative regulation of transcription from RNA polymerase II promoter during mitosis // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035887 // aortic smooth muscle cell differentiation // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0002039 // p53 binding // inferred from physical interaction /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from genetic interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042393 // histone binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay 59.43 201.41 2.20 0.06 0.10 -4.54
201755_at 201755_at NM_006739 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006739.1 /DEF=Homo sapiens minichromosome maintenance deficient (S. cerevisiae) 5 (cell division cycle 46) (MCM5), mRNA. /FEA=mRNA /GEN=MCM5 /PROD=minichromosome maintenance deficient (S.cerevisiae) 5 (cell division cycle 46) /DB_XREF=gi:6981191 /UG=Hs.77171 minichromosome maintenance deficient (S. cerevisiae) 5 (cell division cycle 46) /FL=gb:D83986.1 gb:BC000142.1 gb:BC003656.1 gb:NM_006739.1 NM_006739 minichromosome maintenance complex component 5 MCM5 4174 NM_006739 /// XM_006724242 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006270 // DNA replication initiation // inferred from electronic annotation /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0042555 // MCM complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 27.65 37.17 2.20 0.06 0.10 -4.54
205417_s_at 205417_s_at NM_004393 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004393.1 /DEF=Homo sapiens dystroglycan 1 (dystrophin-associated glycoprotein 1) (DAG1), mRNA. /FEA=mRNA /GEN=DAG1 /PROD=dystroglycan 1 precursor /DB_XREF=gi:4758115 /UG=Hs.76111 dystroglycan 1 (dystrophin-associated glycoprotein 1) /FL=gb:L19711.1 gb:NM_004393.1 NM_004393 dystroglycan 1 (dystrophin-associated glycoprotein 1) DAG1 1605 NM_001165928 /// NM_001177634 /// NM_001177635 /// NM_001177636 /// NM_001177637 /// NM_001177638 /// NM_001177639 /// NM_001177640 /// NM_001177641 /// NM_001177642 /// NM_001177643 /// NM_001177644 /// NM_004393 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006607 // NLS-bearing protein import into nucleus // inferred from direct assay /// 0007016 // cytoskeletal anchoring at plasma membrane // inferred from mutant phenotype /// 0009615 // response to virus // inferred from electronic annotation /// 0014044 // Schwann cell development // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016340 // calcium-dependent cell-matrix adhesion // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from direct assay /// 0021682 // nerve maturation // inferred from electronic annotation /// 0022011 // myelination in peripheral nervous system // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0034453 // microtubule anchoring // inferred from mutant phenotype /// 0043409 // negative regulation of MAPK cascade // inferred from mutant phenotype /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling // inferred from mutant phenotype /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0071679 // commissural neuron axon guidance // inferred from electronic annotation /// 0071711 // basement membrane organization // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0009279 // cell outer membrane // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // inferred from direct assay /// 0016011 // dystroglycan complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0033268 // node of Ranvier // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043034 // costamere // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070938 // contractile ring // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0002162 // dystroglycan binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // inferred from mutant phenotype /// 0015631 // tubulin binding // inferred from direct assay /// 0017166 // vinculin binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from direct assay /// 0043237 // laminin-1 binding // inferred from sequence or structural similarity /// 0051393 // alpha-actinin binding // inferred from direct assay 56.10 249.43 2.20 0.06 0.10 -4.54
212151_at 212151_at BF967998 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF967998 /FEA=EST /DB_XREF=gi:12335213 /DB_XREF=est:602269506F1 /CLONE=IMAGE:4357777 /UG=Hs.21851 Homo sapiens cDNA FLJ12900 fis, clone NT2RP2004321 BF967998 pre-B-cell leukemia homeobox 1 PBX1 5087 NM_001204961 /// NM_001204963 /// NM_002585 /// XM_005245228 /// XM_005245229 /// XM_005245230 /// XM_006711347 0001655 // urogenital system development // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048536 // spleen development // inferred from electronic annotation /// 0048538 // thymus development // inferred from electronic annotation /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 29.75 55.05 2.20 0.06 0.10 -4.54
206559_x_at 206559_x_at NM_001403 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001403.1 /DEF=Homo sapiens eukaryotic translation elongation factor 1 alpha 1-like 14 (EEF1A1L14), mRNA. /FEA=mRNA /GEN=EEF1A1L14 /PROD=eukaryotic translation elongation factor 1 alpha1-like 14 /DB_XREF=gi:4503472 /UG=Hs.274466 eukaryotic translation elongation factor 1 alpha 1-like 14 /FL=gb:NM_001403.1 NM_001403 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation -1542.20 5840.85 -2.19 0.06 0.10 -4.54
219021_at 219021_at NM_018320 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018320.1 /DEF=Homo sapiens hypothetical protein FLJ11099 (FLJ11099), mRNA. /FEA=mRNA /GEN=FLJ11099 /PROD=hypothetical protein FLJ11099 /DB_XREF=gi:8922862 /UG=Hs.131731 hypothetical protein FLJ11099 /FL=gb:NM_018320.1 NM_018320 ring finger protein 121 RNF121 55298 NM_018320 /// NM_194452 /// NM_194453 /// NR_024147 /// NR_024148 /// XM_006718629 /// XM_006718630 /// XM_006718631 /// XM_006718632 /// XM_006718633 /// XM_006718634 /// XM_006718635 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 32.35 64.47 2.19 0.06 0.10 -4.54
213798_s_at 213798_s_at AA806142 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA806142 /FEA=EST /DB_XREF=gi:2874892 /DB_XREF=est:oe29d06.s1 /CLONE=IMAGE:1409963 /UG=Hs.104125 adenylyl cyclase-associated protein AA806142 CAP, adenylate cyclase-associated protein 1 (yeast) CAP1 10487 NM_001105530 /// NM_006367 /// XM_005270367 /// XM_005270368 /// XM_006710294 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007190 // activation of adenylate cyclase activity // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 139.67 742.84 2.19 0.06 0.10 -4.54
201520_s_at 201520_s_at BF034561 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF034561 /FEA=EST /DB_XREF=gi:10742273 /DB_XREF=est:601455476F1 /CLONE=IMAGE:3859242 /UG=Hs.79295 G-rich RNA sequence binding factor 1 /FL=gb:NM_002092.1 gb:U07231.1 BF034561 G-rich RNA sequence binding factor 1 GRSF1 2926 NM_001098477 /// NM_002092 /// XM_005265681 /// XM_005265685 0006378 // mRNA polyadenylation // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003729 // mRNA binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 27.88 320.19 2.19 0.06 0.10 -4.54
203097_s_at 203097_s_at NM_014247 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014247.1 /DEF=Homo sapiens PDZ domain containing guanine nucleotide exchange factor(GEF)1 (PDZ-GEF1), mRNA. /FEA=mRNA /GEN=PDZ-GEF1 /PROD=PDZ domain containing guanine nucleotideexchange factor(GEF)1 /DB_XREF=gi:7657260 /UG=Hs.154545 PDZ domain containing guanine nucleotide exchange factor(GEF)1 /FL=gb:AB002311.1 gb:NM_014247.1 NM_014247 Rap guanine nucleotide exchange factor (GEF) 2 RAPGEF2 9693 NM_014247 /// XM_005263358 /// XM_005263359 /// XM_005263360 /// XM_005263361 /// XM_006714420 /// XM_006714421 /// XM_006714422 0000165 // MAPK cascade // non-traceable author statement /// 0001568 // blood vessel development // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from sequence or structural similarity /// 0019933 // cAMP-mediated signaling // inferred from direct assay /// 0019933 // cAMP-mediated signaling // non-traceable author statement /// 0021591 // ventricular system development // inferred from sequence or structural similarity /// 0021884 // forebrain neuron development // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from direct assay /// 0031547 // brain-derived neurotrophic factor receptor signaling pathway // inferred from sequence or structural similarity /// 0032092 // positive regulation of protein binding // inferred from sequence or structural similarity /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0032486 // Rap protein signal transduction // inferred from mutant phenotype /// 0032854 // positive regulation of Rap GTPase activity // inferred from direct assay /// 0032854 // positive regulation of Rap GTPase activity // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // traceable author statement /// 0038180 // nerve growth factor signaling pathway // inferred from sequence or structural similarity /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0048022 // negative regulation of melanin biosynthetic process // inferred from sequence or structural similarity /// 0048167 // regulation of synaptic plasticity // inferred from sequence or structural similarity /// 0050774 // negative regulation of dendrite morphogenesis // inferred from direct assay /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0061028 // establishment of endothelial barrier // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071320 // cellular response to cAMP // inferred from direct assay /// 0071321 // cellular response to cGMP // inferred from direct assay /// 0071880 // adenylate cyclase-activating adrenergic receptor signaling pathway // inferred from direct assay /// 1901888 // regulation of cell junction assembly // inferred from mutant phenotype /// 1990090 // cellular response to nerve growth factor stimulus // inferred from sequence or structural similarity /// 2000481 // positive regulation of cAMP-dependent protein kinase activity // inferred from direct assay /// 2000670 // positive regulation of dendritic cell apoptotic process // inferred from direct assay /// 2001214 // positive regulation of vasculogenesis // inferred from sequence or structural similarity /// 2001224 // positive regulation of neuron migration // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004871 // signal transducer activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005088 // Ras guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017034 // Rap guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0017034 // Rap guanyl-nucleotide exchange factor activity // inferred from mutant phenotype /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019992 // diacylglycerol binding // non-traceable author statement /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from direct assay /// 0031697 // beta-1 adrenergic receptor binding // inferred from direct assay /// 0046582 // Rap GTPase activator activity // inferred from direct assay /// 0050699 // WW domain binding // inferred from direct assay -75.65 335.27 -2.19 0.06 0.10 -4.54
200777_s_at 200777_s_at NM_014670 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014670.1 /DEF=Homo sapiens KIAA0005 gene product (KIAA0005), mRNA. /FEA=mRNA /GEN=KIAA0005 /PROD=KIAA0005 gene product /DB_XREF=gi:7661849 /UG=Hs.155291 KIAA0005 gene product /FL=gb:D13630.1 gb:NM_014670.1 NM_014670 basic leucine zipper and W2 domains 1 BZW1 9689 NM_001207067 /// NM_001207068 /// NM_001207069 /// NM_014670 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 70.75 757.98 2.19 0.06 0.10 -4.54
201128_s_at 201128_s_at NM_001096 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001096.1 /DEF=Homo sapiens ATP citrate lyase (ACLY), mRNA. /FEA=mRNA /GEN=ACLY /PROD=ATP citrate lyase /DB_XREF=gi:4501864 /UG=Hs.174140 ATP citrate lyase /FL=gb:NM_001096.1 NM_001096 ATP citrate lyase ACLY 47 NM_001096 /// NM_198830 /// XM_005257393 /// XM_005257394 /// XM_005257395 0006101 // citrate metabolic process // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006200 // ATP catabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from direct assay /// 0015936 // coenzyme A metabolic process // traceable author statement /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0031325 // positive regulation of cellular metabolic process // traceable author statement /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009346 // citrate lyase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003878 // ATP citrate synthase activity // traceable author statement /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046912 // transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 77.35 966.93 2.19 0.06 0.10 -4.54
203538_at 203538_at NM_001745 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001745.1 /DEF=Homo sapiens calcium modulating ligand (CAMLG), mRNA. /FEA=mRNA /GEN=CAMLG /PROD=calcium modulating ligand /DB_XREF=gi:4502558 /UG=Hs.13572 calcium modulating ligand /FL=gb:NM_001745.1 gb:U18242.1 NM_001745 calcium modulating ligand CAMLG 819 NM_001745 0001881 // receptor recycling // inferred from electronic annotation /// 0006952 // defense response // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation -57.35 214.10 -2.19 0.06 0.10 -4.54
200733_s_at 200733_s_at U48296 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U48296.1 /DEF=Homo sapiens protein tyrosine phosphatase PTPCAAX1 (hPTPCAAX1) mRNA, complete cds. /FEA=mRNA /GEN=hPTPCAAX1 /PROD=protein tyrosine phosphatase PTPCAAX1 /DB_XREF=gi:1777754 /UG=Hs.227777 protein tyrosine phosphatase type IVA, member 1 /FL=gb:U48296.1 gb:NM_003463.1 U48296 protein tyrosine phosphatase type IVA, member 1 PTP4A1 7803 NM_003463 /// XM_006715563 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // non-traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 88.88 187.06 2.19 0.06 0.10 -4.54
219762_s_at 219762_s_at NM_015414 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015414.1 /DEF=Homo sapiens ribosomal protein L36 (RPL36), mRNA. /FEA=mRNA /GEN=RPL36 /PROD=ribosomal protein L36 /DB_XREF=gi:7661637 /UG=Hs.300759 ribosomal protein L36 /FL=gb:AF077043.1 gb:NM_015414.1 NM_015414 ribosomal protein L36 RPL36 25873 NM_015414 /// NM_033643 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -99.73 895.16 -2.18 0.06 0.10 -4.54
213226_at 213226_at AI346350 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI346350 /FEA=EST /DB_XREF=gi:4083556 /DB_XREF=est:qp50c06.x1 /CLONE=IMAGE:1926442 /UG=Hs.91728 polymyositisscleroderma autoantigen 1 (75kD) AI346350 cyclin A2 CCNA2 890 NM_001237 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007095 // mitotic G2 DNA damage checkpoint // traceable author statement /// 0007265 // Ras protein signal transduction // inferred from expression pattern /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033762 // response to glucagon // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0001939 // female pronucleus // inferred from electronic annotation /// 0001940 // male pronucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation 47.67 160.76 2.18 0.06 0.10 -4.54
209300_s_at 209300_s_at BC002888 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002888.1 /DEF=Homo sapiens, Similar to DKFZP566B183 protein, clone MGC:10356, mRNA, complete cds. /FEA=mRNA /PROD=Similar to DKFZP566B183 protein /DB_XREF=gi:12804070 /UG=Hs.12305 DKFZP566B183 protein /FL=gb:BC002888.1 BC002888 NECAP endocytosis associated 1 NECAP1 25977 NM_015509 /// NR_024260 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 36.25 92.38 2.18 0.06 0.10 -4.54
200909_s_at 200909_s_at NM_001004 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001004.1 /DEF=Homo sapiens ribosomal protein, large P2 (RPLP2), mRNA. /FEA=mRNA /GEN=RPLP2 /PROD=ribosomal protein, large P2 /DB_XREF=gi:4506670 /UG=Hs.119500 ribosomal protein, large P2 /FL=gb:BC005354.1 gb:M17887.1 gb:NM_001004.1 NM_001004 ribosomal protein, large, P2 /// small nucleolar RNA, H/ACA box 52 RPLP2 /// SNORA52 6181 /// 619565 NM_001004 /// NR_002585 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement -271.53 2851.69 -2.18 0.06 0.10 -4.54
202805_s_at 202805_s_at NM_004996 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004996.2 /DEF=Homo sapiens ATP-binding cassette, sub-family C (CFTRMRP), member 1 (ABCC1), transcript variant 1, mRNA. /FEA=mRNA /GEN=ABCC1 /PROD=ATP-binding cassette, sub-family C, member 1,isoform 1 /DB_XREF=gi:9955961 /UG=Hs.89433 ATP-binding cassette, sub-family C (CFTRMRP), member 1 /FL=gb:L05628.1 gb:NM_004996.2 NM_004996 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 ABCC1 4363 NM_004996 /// NM_019862 /// NM_019898 /// NM_019899 /// NM_019900 /// NM_019901 /// NM_019902 /// XM_005255327 /// XM_005255328 /// XM_005255329 /// XM_006720884 /// XM_006720885 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006691 // leukotriene metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009235 // cobalamin metabolic process // traceable author statement /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0042493 // response to drug // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation -30.00 206.62 -2.18 0.06 0.10 -4.54
200061_s_at 200061_s_at BC000523 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000523.1 /DEF=Homo sapiens, Similar to ribosomal protein S24, clone MGC:8595, mRNA, complete cds. /FEA=mRNA /PROD=Similar to ribosomal protein S24 /DB_XREF=gi:12653502 /UG=Hs.180450 ribosomal protein S24 /FL=gb:BC000523.1 gb:BC003149.1 BC000523 ribosomal protein S24 RPS24 6229 NM_001026 /// NM_001142282 /// NM_001142283 /// NM_001142284 /// NM_001142285 /// NM_033022 /// XM_006717938 /// XR_428711 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000462 // maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034101 // erythrocyte homeostasis // inferred from mutant phenotype /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0015935 // small ribosomal subunit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0031369 // translation initiation factor binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay -541.35 3364.35 -2.18 0.06 0.10 -4.54
200933_x_at 200933_x_at NM_001007 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001007.1 /DEF=Homo sapiens ribosomal protein S4, X-linked (RPS4X), mRNA. /FEA=mRNA /GEN=RPS4X /PROD=ribosomal protein S4, X-linked /DB_XREF=gi:4506724 /UG=Hs.108124 ribosomal protein S4, X-linked /FL=gb:BC000472.1 gb:BC002569.1 gb:M58458.1 gb:M22146.1 gb:NM_001007.1 NM_001007 ribosomal protein S4, X-linked RPS4X 6191 NM_001007 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007275 // multicellular organismal development // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from direct assay /// 0005844 // polysome // inferred from direct assay /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -491.60 3660.90 -2.18 0.06 0.10 -4.54
204998_s_at 204998_s_at NM_012068 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012068.2 /DEF=Homo sapiens activating transcription factor 5 (ATF5), mRNA. /FEA=mRNA /GEN=ATF5 /PROD=activating transcription factor 5 /DB_XREF=gi:12597624 /UG=Hs.9754 activating transcription factor 5 /FL=gb:AF305687.1 gb:AB021663.2 gb:NM_012068.2 gb:BC005174.1 NM_012068 activating transcription factor 5 ATF5 22809 NM_001193646 /// NM_001290746 /// NM_012068 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0021889 // olfactory bulb interneuron differentiation // inferred from electronic annotation /// 0021891 // olfactory bulb interneuron development // inferred from electronic annotation /// 0021988 // olfactory lobe development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from mutant phenotype /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred by curator /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 31.52 57.91 2.18 0.06 0.10 -4.54
214152_at 214152_at AU144243 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU144243 /FEA=EST /DB_XREF=gi:11005764 /DB_XREF=est:AU144243 /CLONE=HEMBA1001328 /UG=Hs.247118 phosphatidylinositol glycan, class B AU144243 cell cycle progression 1 /// DYX1C1-CCPG1 readthrough (NMD candidate) CCPG1 /// DYX1C1-CCPG1 9236 /// 100533483 NM_001204450 /// NM_001204451 /// NM_004748 /// NM_020739 /// NR_037923 0007049 // cell cycle // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 2001106 // regulation of Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 25.60 64.55 2.17 0.06 0.10 -4.54
200662_s_at 200662_s_at NM_014765 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014765.1 /DEF=Homo sapiens translocase of outer mitochondrial membrane 20 (yeast) homolog (KIAA0016), mRNA. /FEA=mRNA /GEN=KIAA0016 /PROD=translocase of outer mitochondrial membrane 20(yeast) homolog /DB_XREF=gi:7657256 /UG=Hs.75187 translocase of outer mitochondrial membrane 20 (yeast) homolog /FL=gb:BC000882.1 gb:D13641.1 gb:NM_014765.1 NM_014765 translocase of outer mitochondrial membrane 20 homolog (yeast) TOMM20 9804 NM_014765 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from direct assay /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071806 // protein transmembrane transport // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // non-traceable author statement /// 0005742 // mitochondrial outer membrane translocase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay 80.33 549.04 2.17 0.06 0.10 -4.54
202139_at 202139_at NM_003689 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003689.1 /DEF=Homo sapiens aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) (AKR7A2), mRNA. /FEA=mRNA /GEN=AKR7A2 /PROD=aldo-keto reductase family 7, member A2(aflatoxin aldehyde reductase) /DB_XREF=gi:4502020 /UG=Hs.6980 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) /FL=gb:BC004111.1 gb:AF026947.1 gb:NM_003689.1 NM_003689 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) AKR7A2 8574 NM_003689 0005975 // carbohydrate metabolic process // traceable author statement /// 0006081 // cellular aldehyde metabolic process // traceable author statement /// 0044597 // daunorubicin metabolic process // inferred from mutant phenotype /// 0044598 // doxorubicin metabolic process // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004032 // alditol:NADP+ 1-oxidoreductase activity // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019119 // phenanthrene-9,10-epoxide hydrolase activity // inferred from direct assay 26.60 116.72 2.17 0.06 0.10 -4.54
213887_s_at 213887_s_at AI554759 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI554759 /FEA=EST /DB_XREF=gi:4487122 /DB_XREF=est:tn30e02.x1 /CLONE=IMAGE:2169146 /UG=Hs.24301 polymerase (RNA) II (DNA directed) polypeptide E (25kD) AI554759 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa POLR2E 5434 NM_002695 /// XM_005259579 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006385 // transcription elongation from RNA polymerase III promoter // traceable author statement /// 0006386 // termination of RNA polymerase III transcription // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005666 // DNA-directed RNA polymerase III complex // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // not recorded /// 0005829 // cytosol // traceable author statement 0001054 // RNA polymerase I activity // not recorded /// 0001055 // RNA polymerase II activity // not recorded /// 0001056 // RNA polymerase III activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -75.58 330.51 -2.17 0.06 0.10 -4.54
40016_g_at 40016_g_at AB002301 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB002301:Human mRNA for KIAA0303 gene, partial cds /cds=(0,6415) /gb=AB002301 /gi=2224546 /ug=Hs.54985 /len=6629 AB002301 microtubule associated serine/threonine kinase family member 4 MAST4 375449 NM_001164664 /// NM_001290226 /// NM_001290227 /// NM_001290228 /// NM_015183 /// NM_198828 /// XM_005248498 /// XM_006714602 /// XM_006714603 /// XM_006714604 /// XM_006714605 /// XM_006714606 /// XM_006714607 /// XM_006714608 /// XM_006714609 /// XM_006714610 /// XM_006714611 /// XM_006714612 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -56.35 358.57 -2.17 0.06 0.10 -4.54
201293_x_at 201293_x_at NM_021130 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021130.1 /DEF=Homo sapiens peptidylprolyl isomerase A (cyclophilin A) (PPIA), mRNA. /FEA=mRNA /GEN=PPIA /PROD=peptidylprolyl isomerase A (cyclophilin A) /DB_XREF=gi:10863926 /UG=Hs.182937 peptidylprolyl isomerase A (cyclophilin A) /FL=gb:NM_021130.1 gb:BC000689.1 gb:BC005320.1 NM_021130 peptidyl-prolyl cis-trans isomerase A-like /// peptidylprolyl isomerase A (cyclophilin A) LOC101060363 /// PPIA 5478 /// 101060363 NM_021130 /// NM_203430 /// NM_203431 /// XM_003960117 /// XM_005246048 /// XM_005249791 /// XM_005275876 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0006278 // RNA-dependent DNA replication // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019061 // uncoating of virus // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019076 // viral release from host cell // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030260 // entry into host cell // traceable author statement /// 0034389 // lipid particle organization // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // traceable author statement /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0075713 // establishment of integrated proviral latency // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046790 // virion binding // non-traceable author statement /// 0051082 // unfolded protein binding // traceable author statement -1102.32 5036.44 -2.17 0.06 0.10 -4.54
200781_s_at 200781_s_at NM_001019 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001019.1 /DEF=Homo sapiens ribosomal protein S15a (RPS15A), mRNA. /FEA=mRNA /GEN=RPS15A /PROD=ribosomal protein S15a /DB_XREF=gi:4506688 /UG=Hs.2953 ribosomal protein S15a /FL=gb:BC001697.1 gb:NM_001019.1 NM_001019 ribosomal protein S15a RPS15A 6210 NM_001019 /// NM_001030009 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009615 // response to virus // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045787 // positive regulation of cell cycle // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -537.27 3018.91 -2.17 0.07 0.11 -4.54
201101_s_at 201101_s_at BE963370 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE963370 /FEA=EST /DB_XREF=gi:11766788 /DB_XREF=est:601657132R1 /CLONE=IMAGE:3866335 /UG=Hs.80338 KIAA0164 gene product /FL=gb:D79986.1 gb:NM_014739.1 BE963370 BCL2-associated transcription factor 1 BCLAF1 9774 NM_001077440 /// NM_001077441 /// NM_014739 /// XM_005267236 /// XM_005267237 /// XM_005267238 /// XM_005267239 /// XR_245558 /// XR_245559 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043620 // regulation of DNA-templated transcription in response to stress // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // traceable author statement /// 2000144 // positive regulation of DNA-templated transcription, initiation // inferred from mutant phenotype /// 2001022 // positive regulation of response to DNA damage stimulus // inferred from mutant phenotype /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 67.43 183.24 2.17 0.07 0.11 -4.54
203107_x_at 203107_x_at NM_002952 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002952.1 /DEF=Homo sapiens ribosomal protein S2 (RPS2), mRNA. /FEA=mRNA /GEN=RPS2 /PROD=ribosomal protein S2 /DB_XREF=gi:4506718 /UG=Hs.182426 ribosomal protein S2 /FL=gb:BC001795.1 gb:NM_002952.1 NM_002952 ribosomal protein S2 /// small nucleolar RNA, H/ACA box 64 RPS2 /// SNORA64 6187 /// 26784 NM_002952 /// NR_002326 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051347 // positive regulation of transferase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -1570.82 5173.36 -2.16 0.07 0.11 -4.54
201485_s_at 201485_s_at BC004892 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004892.1 /DEF=Homo sapiens, reticulocalbin 2, EF-hand calcium binding domain, clone MGC:1650, mRNA, complete cds. /FEA=mRNA /PROD=reticulocalbin 2, EF-hand calcium bindingdomain /DB_XREF=gi:13436151 /UG=Hs.79088 reticulocalbin 2, EF-hand calcium binding domain /FL=gb:BC004892.1 gb:NM_002902.1 BC004892 reticulocalbin 2, EF-hand calcium binding domain RCN2 5955 NM_001271837 /// NM_002902 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 33.77 258.44 2.16 0.07 0.11 -4.54
211986_at 211986_at BG287862 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG287862 /FEA=EST /DB_XREF=gi:13042118 /DB_XREF=est:602387619F1 /CLONE=IMAGE:4516588 /UG=Hs.301417 AHNAK nucleoprotein (desmoyokin) BG287862 AHNAK nucleoprotein AHNAK 79026 NM_001620 /// NM_024060 /// XM_005274240 /// XM_005274241 /// XM_005274242 /// XM_005274243 /// XM_005274244 /// XM_005274245 /// XM_005274246 /// XM_006718686 /// XM_006718687 /// XM_006718688 0007399 // nervous system development // non-traceable author statement /// 0043484 // regulation of RNA splicing // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // inferred from sequence or structural similarity /// 1901385 // regulation of voltage-gated calcium channel activity // inferred from mutant phenotype 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030315 // T-tubule // non-traceable author statement /// 0031982 // vesicle // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042383 // sarcolemma // non-traceable author statement /// 0043034 // costamere // inferred from sequence or structural similarity /// 0044291 // cell-cell contact zone // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044548 // S100 protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0097493 // structural molecule activity conferring elasticity // inferred from sequence or structural similarity 139.10 512.02 2.16 0.07 0.11 -4.54
212696_s_at 212696_s_at BF968633 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF968633 /FEA=EST /DB_XREF=gi:12335848 /DB_XREF=est:602271068F1 /CLONE=IMAGE:4359209 /UG=Hs.66394 ring finger protein 4 BF968633 ring finger protein 4 RNF4 6047 NM_001185009 /// NM_001185010 /// NM_002938 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046685 // response to arsenic-containing substance // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from sequence or structural similarity /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity /// 0085020 // protein K6-linked ubiquitination // inferred from sequence or structural similarity /// 0090169 // regulation of spindle assembly // inferred from mutant phenotype /// 0090234 // regulation of kinetochore assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0031491 // nucleosome binding // inferred from sequence or structural similarity /// 0032184 // SUMO polymer binding // inferred from sequence or structural similarity /// 0033142 // progesterone receptor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // non-traceable author statement -60.33 319.36 -2.16 0.07 0.11 -4.54
218211_s_at 218211_s_at NM_024101 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024101.1 /DEF=Homo sapiens hypothetical protein MGC2771 (MGC2771), mRNA. /FEA=mRNA /GEN=MGC2771 /PROD=hypothetical protein MGC2771 /DB_XREF=gi:13129107 /UG=Hs.321130 hypothetical protein MGC2771 /FL=gb:BC001653.1 gb:NM_024101.1 NM_024101 melanophilin MLPH 79083 NM_001042467 /// NM_001281473 /// NM_001281474 /// NM_024101 /// NR_104019 /// XM_006712737 /// XM_006712738 /// XM_006712739 /// XM_006712740 /// XM_006712741 /// XM_006712742 0006605 // protein targeting // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0032400 // melanosome localization // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0035371 // microtubule plus-end // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0031489 // myosin V binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from electronic annotation -34.55 92.70 -2.16 0.07 0.11 -4.54
219506_at 219506_at NM_024579 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024579.1 /DEF=Homo sapiens hypothetical protein FLJ23221 (FLJ23221), mRNA. /FEA=mRNA /GEN=FLJ23221 /PROD=hypothetical protein FLJ23221 /DB_XREF=gi:13375757 /UG=Hs.18397 hypothetical protein FLJ23221 /FL=gb:NM_024579.1 NM_024579 chromosome 1 open reading frame 54 C1orf54 79630 NM_024579 /// XM_005245488 /// XM_006711538 /// XM_006711539 /// XM_006711540 0005576 // extracellular region // inferred from electronic annotation 39.60 247.40 2.15 0.07 0.11 -4.54
209433_s_at 209433_s_at AI457120 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI457120 /FEA=EST /DB_XREF=gi:4309989 /DB_XREF=est:tl72b10.x1 /CLONE=IMAGE:2152603 /UG=Hs.311 phosphoribosyl pyrophosphate amidotransferase /FL=gb:U00238.1 AI457120 phosphoribosyl pyrophosphate amidotransferase PPAT 5471 NM_002703 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // traceable author statement /// 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006543 // glutamine catabolic process // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009113 // purine nucleobase biosynthetic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0019693 // ribose phosphate metabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004044 // amidophosphoribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 28.80 110.72 2.15 0.07 0.11 -4.54
205315_s_at 205315_s_at NM_006750 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006750.1 /DEF=Homo sapiens syntrophin, beta 2 (dystrophin-associated protein A1, 59kD, basic component 2) (SNTB2), mRNA. /FEA=mRNA /GEN=SNTB2 /PROD=syntrophin, beta 2 (dystrophin-associatedprotein A1, 59kD, basic component 2) /DB_XREF=gi:5803176 /UG=Hs.172278 syntrophin, beta 2 (dystrophin-associated protein A1, 59kD, basic component 2) /FL=gb:U40572.1 gb:NM_006750.1 NM_006750 syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) SNTB2 6645 NM_006750 /// NM_130845 /// XM_005256120 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // traceable author statement /// 0016020 // membrane // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 42.80 256.95 2.15 0.07 0.11 -4.54
213421_x_at 213421_x_at AW007273 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW007273 /FEA=EST /DB_XREF=gi:5856051 /DB_XREF=est:wt54d10.x1 /CLONE=IMAGE:2511283 /UG=Hs.58247 protease, serine, 4 (trypsin 4, brain) AW007273 protease, serine, 3 PRSS3 5646 NM_001197097 /// NM_001197098 /// NM_002771 /// NM_007343 /// XM_005251519 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // non-traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0007586 // digestion // traceable author statement /// 0009235 // cobalamin metabolic process // traceable author statement /// 0031638 // zymogen activation // inferred from direct assay /// 0043542 // endothelial cell migration // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -34.15 129.05 -2.15 0.07 0.11 -4.54
200918_s_at 200918_s_at NM_003139 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003139.1 /DEF=Homo sapiens signal recognition particle receptor (docking protein) (SRPR), mRNA. /FEA=mRNA /GEN=SRPR /PROD=signal recognition particle receptor (dockingprotein) /DB_XREF=gi:4507222 /UG=Hs.75730 signal recognition particle receptor (docking protein) /FL=gb:BC001162.1 gb:NM_003139.1 NM_003139 signal recognition particle receptor (docking protein) SRPR 6734 NM_001177842 /// NM_003139 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // traceable author statement /// 0005785 // signal recognition particle receptor complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005047 // signal recognition particle binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 33.53 405.56 2.15 0.07 0.11 -4.54
200657_at 200657_at NM_001152 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001152.1 /DEF=Homo sapiens solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 (SLC25A5), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=SLC25A5 /PROD=solute carrier family 25 (mitochondrial carrier;adenine nucleotide translocator), member 5 /DB_XREF=gi:4502098 /UG=Hs.79172 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 /FL=gb:J02683.1 gb:NM_001152.1 NM_001152 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 SLC25A5 292 NM_001152 0006112 // energy reserve metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0015853 // adenine transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation /// 1901029 // negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071817 // MMXD complex // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015207 // adenine transmembrane transporter activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -352.38 1752.21 -2.15 0.07 0.11 -4.54
217691_x_at 217691_x_at AA853175 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA853175 /FEA=EST /DB_XREF=gi:2939914 /DB_XREF=est:NHTBCae03g02r1 /CLONE=NHTBCae03g02 /UG=Hs.333049 Homo sapiens similar to solute carrier family 16 (monocarboxylic acid transporters), member 3 (H. sapiens) (LOC65816), mRNA AA853175 microRNA 6787 /// solute carrier family 16 (monocarboxylate transporter), member 3 MIR6787 /// SLC16A3 9123 /// 102465472 NM_001042422 /// NM_001042423 /// NM_001206950 /// NM_001206951 /// NM_001206952 /// NM_004207 /// NR_106845 0006090 // pyruvate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015718 // monocarboxylic acid transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0008028 // monocarboxylic acid transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -47.00 133.28 -2.15 0.07 0.11 -4.54
214693_x_at 214693_x_at BE732345 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE732345 /FEA=EST /DB_XREF=gi:10146337 /DB_XREF=est:601566954F1 /CLONE=IMAGE:3841692 /UG=Hs.41569 phosphatidic acid phosphatase type 2A BE732345 neuroblastoma breakpoint family, member 10 /// neuroblastoma breakpoint family, member 14 /// neuroblastoma breakpoint family, member 26 /// neuroblastoma breakpoint family, member 9 NBPF10 /// NBPF14 /// NBPF26 /// NBPF9 25832 /// 400818 /// 100132406 /// 101060684 NM_001037675 /// NM_001039703 /// NM_001277444 /// NM_015383 /// XM_003960230 /// XM_005276139 /// XM_005276140 /// XM_005277503 /// XM_005277504 /// XM_005277505 /// XM_006711091 /// XM_006711092 /// XM_006711093 /// XM_006711094 /// XM_006711095 /// XM_006711096 /// XM_006711265 /// XM_006711317 /// XM_006726340 /// XM_006726341 /// XM_006726342 /// XM_006726343 /// XM_006726344 /// XM_006726345 0005737 // cytoplasm // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay -84.95 202.80 -2.15 0.07 0.11 -4.54
208956_x_at 208956_x_at U62891 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U62891.1 /DEF=Human deoxyuridine triphosphatase (DUT) mRNA, complete cds. /FEA=mRNA /GEN=DUT /PROD=deoxyuridine triphosphatase /DB_XREF=gi:1421817 /UG=Hs.82113 dUTP pyrophosphatase /FL=gb:AB049113.1 gb:U31930.1 gb:U62891.1 gb:M89913.1 gb:NM_001948.1 U62891 deoxyuridine triphosphatase DUT 1854 NM_001025248 /// NM_001025249 /// NM_001948 /// XM_005254211 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006226 // dUMP biosynthetic process // inferred from electronic annotation /// 0006260 // DNA replication // traceable author statement /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046080 // dUTP metabolic process // inferred from electronic annotation /// 0046134 // pyrimidine nucleoside biosynthetic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004170 // dUTP diphosphatase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 31.90 463.25 2.15 0.07 0.11 -4.54
214352_s_at 214352_s_at BF673699 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF673699 /FEA=EST /DB_XREF=gi:11947594 /DB_XREF=est:602136427F1 /CLONE=IMAGE:4272774 /UG=Hs.184050 v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog BF673699 Kirsten rat sarcoma viral oncogene homolog KRAS 3845 NM_004985 /// NM_033360 /// XM_006719069 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007569 // cell aging // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008542 // visual learning // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0035022 // positive regulation of Rac protein signal transduction // inferred from electronic annotation /// 0035176 // social behavior // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051385 // response to mineralocorticoid // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019002 // GMP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0030275 // LRR domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 65.33 207.71 2.15 0.07 0.11 -4.54
202352_s_at 202352_s_at AI446530 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI446530 /FEA=EST /DB_XREF=gi:4295855 /DB_XREF=est:tj05b01.x1 /CLONE=IMAGE:2140585 /UG=Hs.4295 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 /FL=gb:AB003103.1 gb:NM_002816.1 AI446530 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 PSMD12 5718 NM_002816 /// NM_174871 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 59.87 295.66 2.15 0.07 0.11 -4.54
212008_at 212008_at N29889 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N29889 /FEA=EST /DB_XREF=gi:1148409 /DB_XREF=est:yy11e11.s1 /CLONE=IMAGE:270956 /UG=Hs.77495 UBX domain-containing 1 N29889 UBX domain protein 4 UBXN4 23190 NM_014607 /// XM_006712370 0006986 // response to unfolded protein // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -37.65 156.07 -2.15 0.07 0.11 -4.54
218309_at 218309_at NM_018584 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018584.1 /DEF=Homo sapiens hypothetical protein PRO1489 (PRO1489), mRNA. /FEA=mRNA /GEN=PRO1489 /PROD=hypothetical protein PRO1489 /DB_XREF=gi:8924051 /UG=Hs.107767 hypothetical protein PRO1489 /FL=gb:AF116637.1 gb:NM_018584.1 NM_018584 calcium/calmodulin-dependent protein kinase II inhibitor 1 CAMK2N1 55450 NM_018584 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0008427 // calcium-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation 73.72 306.99 2.15 0.07 0.11 -4.54
212931_at 212931_at AB006630 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB006630.1 /DEF=Homo sapiens mRNA for KIAA0292 gene, partial cds. /FEA=mRNA /GEN=KIAA0292 /DB_XREF=gi:2564331 /UG=Hs.201668 transcription factor 20 (AR1) AB006630 transcription factor 20 (AR1) TCF20 6942 NM_005650 /// NM_181492 /// XM_005261722 /// XM_005261723 /// XM_005261724 /// XM_005276955 /// XM_005276956 /// XM_005276957 /// XM_006724313 /// XM_006724314 /// XM_006725781 /// XM_006725782 /// XM_006725783 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -27.07 83.94 -2.14 0.07 0.11 -4.54
212107_s_at 212107_s_at BE561014 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE561014 /FEA=EST /DB_XREF=gi:9804734 /DB_XREF=est:601344618F1 /CLONE=IMAGE:3677500 /UG=Hs.74578 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 9 (RNA helicase A, nuclear DNA helicase II; leukophysin) BE561014 DEAH (Asp-Glu-Ala-His) box helicase 9 DHX9 1660 NM_001357 /// NM_030588 /// NR_033302 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032508 // DNA duplex unwinding // traceable author statement /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // traceable author statement /// 0004003 // ATP-dependent DNA helicase activity // traceable author statement /// 0004004 // ATP-dependent RNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -31.17 100.81 -2.14 0.07 0.11 -4.54
205020_s_at 205020_s_at NM_005738 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005738.1 /DEF=Homo sapiens ADP-ribosylation factor-like 4 (ARL4), mRNA. /FEA=mRNA /GEN=ARL4 /PROD=ADP-ribosylation factor-like 4 /DB_XREF=gi:5031602 /UG=Hs.201672 ADP-ribosylation factor-like 4 /FL=gb:U73960.1 gb:NM_005738.1 NM_005738 ADP-ribosylation factor-like 4A ARL4A 10124 NM_001037164 /// NM_001195396 /// NM_005738 /// NM_212460 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay -50.37 99.19 -2.14 0.07 0.11 -4.54
218230_at 218230_at AL044651 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL044651 /FEA=EST /DB_XREF=gi:5432866 /DB_XREF=est:DKFZp434P082_s1 /CLONE=DKFZp434P082 /UG=Hs.301064 arfaptin 1 /FL=gb:U52521.1 gb:NM_014447.1 AL044651 ADP-ribosylation factor interacting protein 1 ARFIP1 27236 NM_001025593 /// NM_001025595 /// NM_001287431 /// NM_001287432 /// NM_001287433 /// NM_014447 0006886 // intracellular protein transport // inferred from direct assay /// 0050708 // regulation of protein secretion // inferred from direct assay 0000139 // Golgi membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0019904 // protein domain specific binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 41.05 110.03 2.14 0.07 0.11 -4.54
206303_s_at 206303_s_at AF191653 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF191653.1 /DEF=Homo sapiens diphosphoinositol polyphosphate phosphohydrolase type 2 beta (NUDT4) mRNA, complete cds. /FEA=mRNA /GEN=NUDT4 /PROD=diphosphoinositol polyphosphate phosphohydrolasetype 2 beta /DB_XREF=gi:7739471 /UG=Hs.92381 nudix (nucleoside diphosphate linked moiety X)-type motif 4 /FL=gb:NM_019094.1 gb:AF191649.1 gb:AF191650.1 gb:AF191653.1 AF191653 nudix (nucleoside diphosphate linked moiety X)-type motif 4 /// nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 /// nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 2 NUDT4 /// NUDT4P1 /// NUDT4P2 11163 /// 170688 /// 440672 NM_019094 /// NM_199040 /// NR_002212 /// NR_104005 /// XM_005268595 0008152 // metabolic process // inferred from electronic annotation /// 0009187 // cyclic nucleotide metabolic process // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement /// 0019935 // cyclic-nucleotide-mediated signaling // traceable author statement /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046831 // regulation of RNA export from nucleus // traceable author statement /// 0046907 // intracellular transport // traceable author statement 0005622 // intracellular // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030515 // snoRNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050072 // m7G(5')pppN diphosphatase activity // inferred from sequence or structural similarity /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // traceable author statement /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation 135.88 452.49 2.14 0.07 0.11 -4.54
221492_s_at 221492_s_at AF202092 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF202092.1 /DEF=Homo sapiens PC3-96 mRNA, complete cds. /FEA=mRNA /PROD=PC3-96 /DB_XREF=gi:11493699 /UG=Hs.26367 PC3-96 protein /FL=gb:AF202092.1 AF202092 autophagy related 3 ATG3 64422 NM_001278712 /// NM_022488 0000045 // autophagic vacuole assembly // not recorded /// 0000045 // autophagic vacuole assembly // inferred from sequence or structural similarity /// 0000422 // mitochondrion degradation // /// 0006464 // cellular protein modification process // inferred from direct assay /// 0006501 // C-terminal protein lipidation // not recorded /// 0006612 // protein targeting to membrane // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0043653 // mitochondrial fragmentation involved in apoptotic process // inferred from sequence or structural similarity /// 0044804 // nucleophagy // /// 1902017 // regulation of cilium assembly // inferred from sequence or structural similarity 0000153 // cytoplasmic ubiquitin ligase complex // inferred from physical interaction /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0019776 // Atg8 ligase activity // not recorded /// 0019776 // Atg8 ligase activity // inferred from sequence or structural similarity /// 0019777 // Atg12 ligase activity // inferred from sequence or structural similarity /// 0019787 // small conjugating protein ligase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction 57.95 232.97 2.13 0.07 0.11 -4.54
218353_at 218353_at NM_025226 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025226.1 /DEF=Homo sapiens MSTP032 protein (MSTP032), mRNA. /FEA=mRNA /GEN=MSTP032 /PROD=MSTP032 protein /DB_XREF=gi:13376831 /UG=Hs.274368 MSTP032 protein /FL=gb:AF113212.1 gb:NM_025226.1 NM_025226 regulator of G-protein signaling 5 RGS5 8490 NM_001195303 /// NM_001254748 /// NM_001254749 /// NM_003617 /// NM_025226 /// NR_045630 0007165 // signal transduction // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // not recorded /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // not recorded 88.75 919.85 2.13 0.07 0.11 -4.54
201560_at 201560_at NM_013943 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013943.1 /DEF=Homo sapiens chloride intracellular channel 4 (CLIC4), mRNA. /FEA=mRNA /GEN=CLIC4 /PROD=chloride intracellular channel 4 /DB_XREF=gi:7330334 /UG=Hs.25035 chloride intracellular channel 4 /FL=gb:AF109196.1 gb:AF097330.1 gb:AL117424.1 gb:NM_013943.1 NM_013943 chloride intracellular channel 4 CLIC4 25932 NM_013943 0001525 // angiogenesis // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // non-traceable author statement /// 0007035 // vacuolar acidification // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0030154 // cell differentiation // traceable author statement /// 0030216 // keratinocyte differentiation // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0034765 // regulation of ion transmembrane transport // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // non-traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // non-traceable author statement /// 0061299 // retina vasculature morphogenesis in camera-type eye // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from mutant phenotype /// 1902476 // chloride transmembrane transport // inferred from electronic annotation /// 1902476 // chloride transmembrane transport // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0005911 // cell-cell junction // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0015629 // actin cytoskeleton // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 94.82 917.11 2.13 0.07 0.11 -4.54
214214_s_at 214214_s_at AU151801 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU151801 /FEA=EST /DB_XREF=gi:11013322 /DB_XREF=est:AU151801 /CLONE=NT2RP2006128 /UG=Hs.78614 complement component 1, q subcomponent binding protein AU151801 complement component 1, q subcomponent binding protein C1QBP 708 NM_001212 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0007597 // blood coagulation, intrinsic pathway // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030449 // regulation of complement activation // inferred from direct assay /// 0032689 // negative regulation of interferon-gamma production // inferred from direct assay /// 0032695 // negative regulation of interleukin-12 production // inferred from direct assay /// 0039534 // negative regulation of MDA-5 signaling pathway // inferred from direct assay /// 0039536 // negative regulation of RIG-I signaling pathway // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042256 // mature ribosome assembly // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0050687 // negative regulation of defense response to virus // inferred from mutant phenotype /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0070131 // positive regulation of mitochondrial translation // inferred from sequence or structural similarity /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from direct assay /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from mutant phenotype /// 1901165 // positive regulation of trophoblast cell migration // inferred from mutant phenotype /// 2000510 // positive regulation of dendritic cell chemotaxis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0001849 // complement component C1q binding // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005540 // hyaluronic acid binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from direct assay /// 0030984 // kininogen binding // inferred from direct assay /// 0031690 // adrenergic receptor binding // inferred from sequence or structural similarity /// 0097177 // mitochondrial ribosome binding // inferred from sequence or structural similarity 60.90 314.90 2.13 0.07 0.11 -4.54
201992_s_at 201992_s_at NM_004521 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004521.1 /DEF=Homo sapiens kinesin family member 5B (KIF5B), mRNA. /FEA=mRNA /GEN=KIF5B /PROD=kinesin family member 5B /DB_XREF=gi:4758647 /UG=Hs.149436 kinesin family member 5B /FL=gb:NM_004521.1 NM_004521 kinesin family member 5B KIF5B 3799 NM_004521 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007018 // microtubule-based movement // traceable author statement /// 0007028 // cytoplasm organization // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0035617 // stress granule disassembly // inferred from sequence or structural similarity /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0047496 // vesicle transport along microtubule // inferred from sequence or structural similarity /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043227 // membrane-bounded organelle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -80.08 246.71 -2.12 0.07 0.11 -4.54
210958_s_at 210958_s_at BC003646 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003646.1 /DEF=Homo sapiens, clone MGC:4693, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:4693) /DB_XREF=gi:13177744 /UG=Hs.54985 KIAA0303 protein /FL=gb:BC003646.1 BC003646 microtubule associated serine/threonine kinase family member 4 MAST4 375449 NM_001164664 /// NM_001290226 /// NM_001290227 /// NM_001290228 /// NM_015183 /// NM_198828 /// XM_005248498 /// XM_006714602 /// XM_006714603 /// XM_006714604 /// XM_006714605 /// XM_006714606 /// XM_006714607 /// XM_006714608 /// XM_006714609 /// XM_006714610 /// XM_006714611 /// XM_006714612 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -37.22 182.01 -2.12 0.07 0.11 -4.54
201300_s_at 201300_s_at NM_000311 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000311.1 /DEF=Homo sapiens prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia) (PRNP), mRNA. /FEA=mRNA /GEN=PRNP /PROD=prion protein /DB_XREF=gi:4506112 /UG=Hs.74621 prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia) /FL=gb:AY008282.1 gb:M13899.1 gb:NM_000311.1 NM_000311 prion protein PRNP 5621 NM_000311 /// NM_001080121 /// NM_001080122 /// NM_001080123 /// NM_001271561 /// NM_183079 0001933 // negative regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0006878 // cellular copper ion homeostasis // non-traceable author statement /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007611 // learning or memory // inferred from electronic annotation /// 0008152 // metabolic process // traceable author statement /// 0032689 // negative regulation of interferon-gamma production // inferred from sequence or structural similarity /// 0032700 // negative regulation of interleukin-17 production // inferred from sequence or structural similarity /// 0032703 // negative regulation of interleukin-2 production // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0046007 // negative regulation of activated T cell proliferation // inferred from sequence or structural similarity /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0070885 // negative regulation of calcineurin-NFAT signaling cascade // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0015631 // tubulin binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043008 // ATP-dependent protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation 85.20 406.23 2.12 0.07 0.11 -4.54
212895_s_at 212895_s_at AL527773 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL527773 /FEA=EST /DB_XREF=gi:12791266 /DB_XREF=est:AL527773 /CLONE=CS0DC026YF10 (3 prime) /UG=Hs.118021 active BCR-related gene AL527773 active BCR-related ABR 29 NM_001092 /// NM_001159746 /// NM_001256847 /// NM_001282149 /// NM_021962 /// XM_006721506 /// XM_006721507 /// XM_006721508 /// XM_006721509 /// XM_006721510 /// XM_006721511 /// XM_006721512 /// XM_006725292 /// XM_006725293 /// XM_006725294 /// XM_006725295 /// XM_006725296 /// XM_006725297 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032855 // positive regulation of Rac GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043314 // negative regulation of neutrophil degranulation // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0030675 // Rac GTPase activator activity // inferred from electronic annotation -33.68 169.34 -2.12 0.07 0.11 -4.54
213044_at 213044_at N22548 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N22548 /FEA=EST /DB_XREF=gi:1128682 /DB_XREF=est:yw30c06.s1 /CLONE=IMAGE:253738 /UG=Hs.17820 Rho-associated, coiled-coil containing protein kinase 1 N22548 Rho-associated, coiled-coil containing protein kinase 1 ROCK1 6093 NM_005406 0003383 // apical constriction // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006939 // smooth muscle contraction // traceable author statement /// 0007159 // leukocyte cell-cell adhesion // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from mutant phenotype /// 0022614 // membrane to membrane docking // inferred from direct assay /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // traceable author statement /// 0032060 // bleb assembly // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // traceable author statement /// 0032970 // regulation of actin filament-based process // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045616 // regulation of keratinocyte differentiation // inferred from mutant phenotype /// 0050900 // leukocyte migration // inferred from direct assay /// 0050901 // leukocyte tethering or rolling // inferred from direct assay /// 0051451 // myoblast migration // inferred from sequence or structural similarity /// 0051492 // regulation of stress fiber assembly // traceable author statement /// 0051893 // regulation of focal adhesion assembly // traceable author statement /// 0051894 // positive regulation of focal adhesion assembly // inferred from sequence or structural similarity /// 2000114 // regulation of establishment of cell polarity // traceable author statement /// 2000145 // regulation of cell motility // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0032059 // bleb // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -57.78 494.34 -2.12 0.07 0.11 -4.54
202083_s_at 202083_s_at AI017770 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI017770 /FEA=EST /DB_XREF=gi:3232106 /DB_XREF=est:ov32b12.x1 /CLONE=IMAGE:1639007 /UG=Hs.75232 SEC14 (S. cerevisiae)-like 1 /FL=gb:D67029.1 gb:NM_003003.1 AI017770 SEC14-like 1 (S. cerevisiae) SEC14L1 6397 NM_001039573 /// NM_001143998 /// NM_001143999 /// NM_001144001 /// NM_001204408 /// NM_001204410 /// NM_003003 0006810 // transport // inferred from electronic annotation 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation -47.75 179.30 -2.12 0.07 0.11 -4.54
201809_s_at 201809_s_at NM_000118 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000118.1 /DEF=Homo sapiens endoglin (Osler-Rendu-Weber syndrome 1) (ENG), mRNA. /FEA=mRNA /GEN=ENG /PROD=endoglin precursor /DB_XREF=gi:4557554 /UG=Hs.76753 endoglin (Osler-Rendu-Weber syndrome 1) /FL=gb:NM_000118.1 NM_000118 endoglin ENG 2022 NM_000118 /// NM_001114753 /// NM_001278138 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001300 // chronological cell aging // inferred from electronic annotation /// 0001300 // chronological cell aging // inferred from expression pattern /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001947 // heart looping // inferred from sequence or structural similarity /// 0003084 // positive regulation of systemic arterial blood pressure // inferred from mutant phenotype /// 0003273 // cell migration involved in endocardial cushion formation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007507 // heart development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0016477 // cell migration // inferred from mutant phenotype /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0022009 // central nervous system vasculogenesis // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // inferred from mutant phenotype /// 0030155 // regulation of cell adhesion // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0030509 // BMP signaling pathway // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030513 // positive regulation of BMP signaling pathway // inferred from direct assay /// 0031953 // negative regulation of protein autophosphorylation // inferred from direct assay /// 0031960 // response to corticosteroid // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0036273 // response to statin // inferred from electronic annotation /// 0042060 // wound healing // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042325 // regulation of phosphorylation // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048745 // smooth muscle tissue development // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0048845 // venous blood vessel morphogenesis // inferred from sequence or structural similarity /// 0048870 // cell motility // inferred from mutant phenotype /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from mutant phenotype /// 0060326 // cell chemotaxis // inferred from mutant phenotype /// 0060348 // bone development // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0070278 // extracellular matrix constituent secretion // inferred from electronic annotation /// 0070483 // detection of hypoxia // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071559 // response to transforming growth factor beta // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070022 // transforming growth factor beta receptor homodimeric complex // inferred by curator /// 0072563 // endothelial microparticle // inferred from electronic annotation 0004888 // transmembrane signaling receptor activity // non-traceable author statement /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from direct assay /// 0005072 // transforming growth factor beta receptor, cytoplasmic mediator activity // inferred from direct assay /// 0005114 // type II transforming growth factor beta receptor binding // inferred from physical interaction /// 0005114 // type II transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005534 // galactose binding // inferred from direct assay /// 0005539 // glycosaminoglycan binding // inferred from direct assay /// 0005539 // glycosaminoglycan binding // inferred from sequence or structural similarity /// 0034713 // type I transforming growth factor beta receptor binding // inferred from physical interaction /// 0034713 // type I transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0048185 // activin binding // traceable author statement /// 0050431 // transforming growth factor beta binding // inferred from physical interaction -198.17 1126.36 -2.12 0.07 0.11 -4.54
204610_s_at 204610_s_at NM_006848 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006848.1 /DEF=Homo sapiens hepatitis delta antigen-interacting protein A (DIPA), mRNA. /FEA=mRNA /GEN=DIPA /PROD=hepatitis delta antigen-interacting protein A /DB_XREF=gi:5803004 /UG=Hs.66713 hepatitis delta antigen-interacting protein A /FL=gb:U63825.1 gb:NM_006848.1 NM_006848 coiled-coil domain containing 85B CCDC85B 11007 NM_006848 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 53.88 173.46 2.12 0.07 0.11 -4.54
204215_at 204215_at NM_024315 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024315.1 /DEF=Homo sapiens hypothetical protein MGC4175 (MGC4175), mRNA. /FEA=mRNA /GEN=MGC4175 /PROD=hypothetical protein MGC4175 /DB_XREF=gi:13236556 /UG=Hs.322404 hypothetical protein MGC4175 /FL=gb:BC002837.1 gb:NM_024315.1 NM_024315 transmembrane protein 243, mitochondrial TMEM243 79161 NM_024315 /// XM_005250585 /// XM_005250586 /// XM_005250587 /// XM_005250588 /// XM_005250589 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 40.37 115.36 2.12 0.07 0.11 -4.54
207783_x_at 207783_x_at NM_017627 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017627.1 /DEF=Homo sapiens hypothetical protein FLJ20030 (FLJ20030), mRNA. /FEA=mRNA /GEN=FLJ20030 /PROD=hypothetical protein FLJ20030 /DB_XREF=gi:8923031 /UG=Hs.326456 hypothetical protein FLJ20030 /FL=gb:NM_017627.1 NM_017627 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase HUWE1 10075 NM_031407 /// XM_005261965 /// XM_005261966 /// XM_005261967 /// XM_005261968 /// XM_005261969 /// XM_005261971 /// XM_005261972 /// XM_006724574 0000209 // protein polyubiquitination // inferred from direct assay /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from mutant phenotype /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -1014.95 5022.43 -2.12 0.07 0.11 -4.54
202722_s_at 202722_s_at NM_002056 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002056.1 /DEF=Homo sapiens glutamine-fructose-6-phosphate transaminase 1 (GFPT1), mRNA. /FEA=mRNA /GEN=GFPT1 /PROD=glucosamine-fructose-6-phosphateaminotransferase /DB_XREF=gi:4503980 /UG=Hs.1674 glutamine-fructose-6-phosphate transaminase 1 /FL=gb:M90516.1 gb:NM_002056.1 NM_002056 glutamine--fructose-6-phosphate transaminase 1 GFPT1 2673 NM_001244710 /// NM_002056 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006002 // fructose 6-phosphate metabolic process // inferred from electronic annotation /// 0006042 // glucosamine biosynthetic process // inferred from electronic annotation /// 0006047 // UDP-N-acetylglucosamine metabolic process // inferred from electronic annotation /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // inferred from electronic annotation /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009744 // response to sucrose // inferred from electronic annotation /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032868 // response to insulin // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004360 // glutamine-fructose-6-phosphate transaminase (isomerizing) activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 39.95 229.12 2.12 0.07 0.11 -4.54
200026_at 200026_at NM_000995 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000995.1 /DEF=Homo sapiens ribosomal protein L34 (RPL34), mRNA. /FEA=mRNA /GEN=RPL34 /PROD=ribosomal protein L34 /DB_XREF=gi:4506636 /UG=Hs.250895 ribosomal protein L34 /FL=gb:L38941.1 gb:BC001773.1 gb:NM_000995.1 NM_000995 ribosomal protein L34 RPL34 6164 NM_000995 /// NM_033625 /// XM_005263172 /// XM_006714287 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement -475.95 2088.95 -2.12 0.07 0.11 -4.54
217703_x_at 217703_x_at AA401963 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA401963 /FEA=EST /DB_XREF=gi:2055965 /DB_XREF=est:zu53c08.s1 /CLONE=IMAGE:741710 /UG=Hs.194107 ESTs, Moderately similar to ALU7_HUMAN ALU SUBFAMILY SQ SEQUENCE CONTAMINATION WARNING ENTRY H.sapiens AA401963 43.10 109.28 2.12 0.07 0.11 -4.54
208785_s_at 208785_s_at BE893893 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE893893 /FEA=EST /DB_XREF=gi:10355716 /DB_XREF=est:601436260F1 /CLONE=IMAGE:3921446 /UG=Hs.121849 microtubule-associated proteins 1A1B light chain 3 /FL=gb:AF303888.1 gb:NM_022818.2 gb:AF183417.1 BE893893 microtubule-associated protein 1 light chain 3 beta MAP1LC3B 81631 NM_022818 /// XM_005256184 0000045 // autophagic vacuole assembly // not recorded /// 0000422 // mitochondrion degradation // not recorded /// 0006914 // autophagy // inferred from electronic annotation /// 0006995 // cellular response to nitrogen starvation // not recorded /// 0032258 // CVT pathway // not recorded /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0044805 // late nucleophagy // not recorded /// 0071211 // protein targeting to vacuole involved in autophagy // not recorded 0000407 // pre-autophagosomal structure // not recorded /// 0000421 // autophagic vacuole membrane // not recorded /// 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005930 // axoneme // inferred from sequence or structural similarity /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // not recorded /// 0008429 // phosphatidylethanolamine binding // not recorded /// 0050811 // GABA receptor binding // not recorded -101.68 489.56 -2.11 0.07 0.11 -4.54
209464_at 209464_at AB011446 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB011446.1 /DEF=Homo sapiens mRNA for Aik2, complete cds. /FEA=mRNA /GEN=aik2 /PROD=Aik2 /DB_XREF=gi:5688865 /UG=Hs.180655 serinethreonine kinase 12 /FL=gb:BC000442.1 gb:AF004022.1 gb:AF008552.1 gb:AB011450.1 gb:AF015254.1 gb:NM_004217.1 gb:AB011446.1 AB011446 aurora kinase B AURKB 9212 NM_001256834 /// NM_001284526 /// NM_004217 /// XM_005256854 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0000910 // cytokinesis // inferred from electronic annotation /// 0002903 // negative regulation of B cell apoptotic process // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008608 // attachment of spindle microtubules to kinetochore // traceable author statement /// 0009838 // abscission // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016570 // histone modification // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031565 // cytokinesis checkpoint // inferred from sequence or structural similarity /// 0031577 // spindle checkpoint // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032466 // negative regulation of cytokinesis // inferred from sequence or structural similarity /// 0032467 // positive regulation of cytokinesis // inferred from mutant phenotype /// 0032467 // positive regulation of cytokinesis // traceable author statement /// 0034501 // protein localization to kinetochore // inferred from mutant phenotype /// 0034644 // cellular response to UV // inferred from direct assay /// 0036089 // cleavage furrow formation // inferred from direct assay /// 0043146 // spindle stabilization // inferred from mutant phenotype /// 0043988 // histone H3-S28 phosphorylation // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // traceable author statement /// 0051256 // spindle midzone assembly involved in mitosis // inferred from mutant phenotype /// 0051256 // spindle midzone assembly involved in mitosis // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051983 // regulation of chromosome segregation // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000779 // condensed chromosome, centromeric region // inferred from direct assay /// 0000780 // condensed nuclear chromosome, centromeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0010369 // chromocenter // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0030496 // midbody // traceable author statement /// 0032133 // chromosome passenger complex // inferred from physical interaction /// 0032133 // chromosome passenger complex // traceable author statement /// 0045171 // intercellular bridge // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004712 // protein serine/threonine/tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0035174 // histone serine kinase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 27.43 55.69 2.11 0.07 0.11 -4.54
213016_at 213016_at AA573805 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA573805 /FEA=EST /DB_XREF=gi:2348320 /DB_XREF=est:nk07g11.s1 /CLONE=IMAGE:1012868 /UG=Hs.152939 Homo sapiens clone 24630 mRNA sequence AA573805 bobby sox homolog (Drosophila) BBX 56987 NM_001142568 /// NM_001276286 /// NM_020235 /// XM_005247642 /// XM_005247643 /// XM_005247644 /// XM_005247645 /// XM_005247646 /// XM_006713706 /// XM_006713707 /// XM_006713708 /// XM_006713709 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0060348 // bone development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation 52.45 146.68 2.11 0.07 0.11 -4.54
221726_at 221726_at BE250348 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE250348 /FEA=EST /DB_XREF=gi:9120458 /DB_XREF=est:600943342T1 /CLONE=IMAGE:2959811 /UG=Hs.326249 Homo sapiens mRNA; cDNA DKFZp586E0524 (from clone DKFZp586E0524) BE250348 ribosomal protein L22 RPL22 6146 NM_000983 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0046632 // alpha-beta T cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -64.72 667.09 -2.11 0.07 0.11 -4.54
218271_s_at 218271_s_at NM_018622 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018622.1 /DEF=Homo sapiens presenilins associated rhomboid-like protein (PRO2207), mRNA. /FEA=mRNA /GEN=PRO2207 /PROD=presenilins associated rhomboid-like protein /DB_XREF=gi:8924133 /UG=Hs.13094 presenilins associated rhomboid-like protein /FL=gb:AF197937.1 gb:AF116692.1 gb:NM_018622.1 NM_018622 presenilin associated, rhomboid-like PARL 55486 NM_001037639 /// NM_001037640 /// NM_018622 /// XM_005247582 /// XM_005247583 /// XM_005247584 /// XM_005247585 /// XM_005247586 /// XM_005247587 0006508 // proteolysis // inferred from electronic annotation /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from electronic annotation /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -36.10 215.62 -2.11 0.07 0.11 -4.54
219132_at 219132_at NM_021255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021255.1 /DEF=Homo sapiens pellino (Drosophila) homolog 2 (PELI2), mRNA. /FEA=mRNA /GEN=PELI2 /PROD=pellino (Drosophila) homolog 2 /DB_XREF=gi:10864062 /UG=Hs.44038 pellino (Drosophila) homolog 2 /FL=gb:AF302502.1 gb:NM_021255.1 NM_021255 pellino E3 ubiquitin protein ligase family member 2 PELI2 57161 NM_021255 /// XM_005267890 /// XM_006720211 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0008063 // Toll signaling pathway // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0043410 // positive regulation of MAPK cascade // inferred from direct assay /// 0045087 // innate immune response // traceable author statement 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation -28.55 40.80 -2.11 0.07 0.11 -4.54
200048_s_at 200048_s_at NM_006694 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006694.1 /DEF=Homo sapiens jumping translocation breakpoint (JTB), mRNA. /FEA=mRNA /GEN=JTB /PROD=jumping translocation breakpoint /DB_XREF=gi:5729888 /UG=Hs.6396 jumping translocation breakpoint /FL=gb:BC000499.1 gb:BC001363.1 gb:BC000996.2 gb:BC001667.1 gb:AB016488.1 gb:AF131797.1 gb:NM_006694.1 gb:AF115850.2 NM_006694 jumping translocation breakpoint JTB 10899 NM_006694 0000910 // cytokinesis // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay 0019901 // protein kinase binding // inferred from direct assay 111.07 636.69 2.10 0.07 0.11 -4.54
207243_s_at 207243_s_at NM_001743 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001743.1 /DEF=Homo sapiens calmodulin 2 (phosphorylase kinase, delta) (CALM2), mRNA. /FEA=mRNA /GEN=CALM2 /PROD=calmodulin 2 (phosphorylase kinase, delta) /DB_XREF=gi:4502548 /UG=Hs.182278 calmodulin 2 (phosphorylase kinase, delta) /FL=gb:M19311.1 gb:NM_001743.1 NM_001743 calmodulin 1 (phosphorylase kinase, delta) /// calmodulin 2 (phosphorylase kinase, delta) /// calmodulin 3 (phosphorylase kinase, delta) CALM1 /// CALM2 /// CALM3 801 /// 805 /// 808 NM_001166106 /// NM_001743 /// NM_005184 /// NM_006888 /// XM_006720258 0001975 // response to amphetamine // inferred from electronic annotation /// 0002027 // regulation of heart rate // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0005513 // detection of calcium ion // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030801 // positive regulation of cyclic nucleotide metabolic process // inferred from direct assay /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from electronic annotation /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred by curator 0000922 // spindle pole // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0030017 // sarcomere // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0031432 // titin binding // inferred from physical interaction /// 0031800 // type 3 metabotropic glutamate receptor binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0031997 // N-terminal myristoylation domain binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0072542 // protein phosphatase activator activity // inferred from direct assay 244.88 2461.06 2.10 0.07 0.11 -4.54
52169_at 52169_at AI302185 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI302185:qn58d02.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-1902435 /clone_end=3' /gb=AI302185 /gi=3961531 /ug=Hs.4789 /len=522 AI302185 STE20-related kinase adaptor alpha STRADA 92335 NM_001003786 /// NM_001003787 /// NM_001003788 /// NM_001165969 /// NM_001165970 /// NM_153335 /// XM_005257797 /// XM_005257798 /// XM_005257799 /// XM_005257800 /// XM_005257801 /// XM_005257803 /// XR_243687 /// XR_243688 0006468 // protein phosphorylation // inferred from direct assay /// 0006611 // protein export from nucleus // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0032147 // activation of protein kinase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0030295 // protein kinase activator activity // inferred from direct assay 34.92 207.89 2.10 0.07 0.11 -4.54
213134_x_at 213134_x_at AI765445 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI765445 /FEA=EST /DB_XREF=gi:5231954 /DB_XREF=est:wi80b08.x1 /CLONE=IMAGE:2399607 /UG=Hs.77311 BTG family, member 3 AI765445 BTG family, member 3 BTG3 10950 NM_001130914 /// NM_006806 /// XM_006723963 0008285 // negative regulation of cell proliferation // traceable author statement /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -41.40 299.93 -2.10 0.07 0.11 -4.54
218107_at 218107_at NM_025160 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025160.1 /DEF=Homo sapiens hypothetical protein FLJ21016 (FLJ21016), mRNA. /FEA=mRNA /GEN=FLJ21016 /PROD=hypothetical protein FLJ21016 /DB_XREF=gi:13376760 /UG=Hs.289069 hypothetical protein FLJ21016 /FL=gb:NM_025160.1 NM_025160 WD repeat domain 26 WDR26 80232 NM_001115113 /// NM_025160 /// XM_005273273 /// XM_006711817 /// XR_247043 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 51.27 357.99 2.10 0.07 0.11 -4.54
206044_s_at 206044_s_at NM_004333 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004333.1 /DEF=Homo sapiens v-raf murine sarcoma viral oncogene homolog B1 (BRAF), mRNA. /FEA=mRNA /GEN=BRAF /PROD=v-raf murine sarcoma viral oncogene homolog B1 /DB_XREF=gi:4757867 /UG=Hs.622 v-raf murine sarcoma viral oncogene homolog B1 /FL=gb:M95712.1 gb:NM_004333.1 NM_004333 B-Raf proto-oncogene, serine/threonine kinase /// KIAA1549 BRAF /// KIAA1549 673 /// 57670 NM_001164665 /// NM_004333 /// NM_020910 /// XM_005250045 /// XM_005250046 /// XM_006716071 /// XM_006716072 /// XR_242190 0000165 // MAPK cascade // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009887 // organ morphogenesis // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070849 // response to epidermal growth factor // inferred from direct assay /// 0071277 // cellular response to calcium ion // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016442 // RISC complex // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0031267 // small GTPase binding // inferred from physical interaction /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -25.95 58.03 -2.10 0.07 0.11 -4.54
208673_s_at 208673_s_at AF107405 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF107405.1 /DEF=Homo sapiens pre-mRNA splicing factor (SFRS3) mRNA, complete cds. /FEA=mRNA /GEN=SFRS3 /PROD=pre-mRNA splicing factor /DB_XREF=gi:5531903 /UG=Hs.167460 splicing factor, arginineserine-rich 3 /FL=gb:BC000914.1 gb:AF107405.1 AF107405 serine/arginine-rich splicing factor 3 SRSF3 6428 NM_003017 /// NR_036610 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 72.18 200.49 2.10 0.07 0.12 -4.54
212537_x_at 212537_x_at BE733979 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE733979 /FEA=EST /DB_XREF=gi:10147971 /DB_XREF=est:601571007F1 /CLONE=IMAGE:3925800 /UG=Hs.82202 ribosomal protein L17 BE733979 chromosome 18 open reading frame 32 /// ribosomal protein L17 /// RPL17-C18orf32 readthrough /// small nucleolar RNA, C/D box 58A /// small nucleolar RNA, C/D box 58B /// small nucleolar RNA, C/D box 58C C18orf32 /// RPL17 /// RPL17-C18orf32 /// SNORD58A /// SNORD58B /// SNORD58C 6139 /// 26790 /// 26791 /// 497661 /// 100124516 /// 100526842 NM_000985 /// NM_001035005 /// NM_001035006 /// NM_001199340 /// NM_001199341 /// NM_001199342 /// NM_001199343 /// NM_001199344 /// NM_001199345 /// NM_001199346 /// NM_001199355 /// NM_001199356 /// NR_002571 /// NR_002572 /// NR_003701 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007165 // signal transduction // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0044822 // poly(A) RNA binding // inferred from direct assay -532.48 2914.81 -2.10 0.07 0.12 -4.54
201768_s_at 201768_s_at BC004467 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004467.1 /DEF=Homo sapiens, KIAA0171 gene product, clone MGC:10257, mRNA, complete cds. /FEA=mRNA /PROD=KIAA0171 gene product /DB_XREF=gi:13325306 /UG=Hs.155623 KIAA0171 gene product /FL=gb:D79993.1 gb:BC004467.1 gb:NM_014666.1 BC004467 clathrin interactor 1 CLINT1 9685 NM_001195555 /// NM_001195556 /// NM_014666 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from physical interaction -35.77 187.96 -2.10 0.07 0.12 -4.54
201016_at 201016_at BE542684 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE542684 /FEA=EST /DB_XREF=gi:9771329 /DB_XREF=est:601067180F1 /CLONE=IMAGE:3453571 /UG=Hs.4310 eukaryotic translation initiation factor 1A /FL=gb:BC000793.1 gb:L18960.1 gb:NM_001412.1 BE542684 eukaryotic translation initiation factor 1A, X-linked EIF1AX 1964 NM_001412 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 56.35 212.25 2.09 0.07 0.12 -4.54
220964_s_at 220964_s_at NM_030981 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030981.1 /DEF=Homo sapiens small GTP-binding protein (RAB1B), mRNA. /FEA=mRNA /GEN=RAB1B /PROD=small GTP-binding protein /DB_XREF=gi:13569961 /FL=gb:NM_030981.1 NM_030981 RAB1B, member RAS oncogene family RAB1B 81876 NM_030981 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay 79.37 294.99 2.09 0.07 0.12 -4.54
201723_s_at 201723_s_at U41514 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U41514.1 /DEF=Human UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase mRNA, complete cds. /FEA=mRNA /PROD=UDP-GalNAc:polypeptideN-acetylgalactosaminyltransferase /DB_XREF=gi:1136284 /UG=Hs.80120 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) /FL=gb:U41514.1 gb:NM_020474.2 U41514 polypeptide N-acetylgalactosaminyltransferase 1 GALNT1 2589 NM_020474 /// XM_005258239 0006486 // protein glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0016266 // O-glycan processing // traceable author statement /// 0018242 // protein O-linked glycosylation via serine // inferred from direct assay /// 0018243 // protein O-linked glycosylation via threonine // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 58.08 841.29 2.09 0.07 0.12 -4.54
206158_s_at 206158_s_at NM_003418 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003418.1 /DEF=Homo sapiens zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) (ZNF9), mRNA. /FEA=mRNA /GEN=ZNF9 /PROD=zinc finger protein 9 (a cellular retroviralnucleic acid binding protein) /DB_XREF=gi:4827070 /UG=Hs.2110 zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) /FL=gb:NM_003418.1 gb:M28372.1 NM_003418 CCHC-type zinc finger, nucleic acid binding protein CNBP 7555 NM_001127192 /// NM_001127193 /// NM_001127194 /// NM_001127195 /// NM_001127196 /// NM_003418 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -138.10 632.20 -2.09 0.07 0.12 -4.54
221230_s_at 221230_s_at NM_016374 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016374.2 /DEF=Homo sapiens RBP1-like protein (BCAA), mRNA. /FEA=mRNA /GEN=BCAA /PROD=RBP1-like protein /DB_XREF=gi:13518237 /FL=gb:NM_016374.2 NM_016374 AT rich interactive domain 4B (RBP1-like) ARID4B 51742 NM_001206794 /// NM_016374 /// NM_031371 /// XM_005273160 /// XM_006711781 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0034773 // histone H4-K20 trimethylation // inferred from electronic annotation /// 0036124 // histone H3-K9 trimethylation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -37.80 154.10 -2.09 0.07 0.12 -4.54
221829_s_at 221829_s_at AI307759 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI307759 /FEA=EST /DB_XREF=gi:4002363 /DB_XREF=est:tb24g08.x1 /CLONE=IMAGE:2055326 /UG=Hs.168075 karyopherin (importin) beta 2 AI307759 transportin 1 TNPO1 3842 NM_002270 /// NM_153188 /// XM_005248500 /// XM_005248501 0000060 // protein import into nucleus, translocation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -551.27 1686.51 -2.09 0.07 0.12 -4.54
217398_x_at 217398_x_at AK026525 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026525.1 /DEF=Homo sapiens cDNA: FLJ22872 fis, clone KAT02551, highly similar to HUMGAPDH Human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA. /FEA=mRNA /DB_XREF=gi:10439402 /UG=Hs.169476 glyceraldehyde-3-phosphate dehydrogenase AK026525 glyceraldehyde-3-phosphate dehydrogenase GAPDH 2597 NM_001256799 /// NM_001289745 /// NM_001289746 /// NM_002046 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0035606 // peptidyl-cysteine S-trans-nitrosylation // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0051402 // neuron apoptotic process // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0004365 // glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity // inferred from sequence or structural similarity /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035605 // peptidyl-cysteine S-nitrosylase activity // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from physical interaction /// 0050661 // NADP binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation -1228.30 4702.48 -2.09 0.07 0.12 -4.54
212582_at 212582_at AL049923 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049923.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564E2282 (from clone DKFZp564E2282). /FEA=mRNA /DB_XREF=gi:4884169 /UG=Hs.109694 KIAA1451 protein AL049923 oxysterol binding protein-like 8 OSBPL8 114882 NM_001003712 /// NM_020841 /// XM_005268621 /// XM_005268622 /// XM_005268623 /// XM_006719222 /// XM_006719223 /// XM_006719224 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0010891 // negative regulation of sequestering of triglyceride // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from direct assay /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0090204 // protein localization to nuclear pore // inferred from electronic annotation 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from direct assay -45.15 298.12 -2.09 0.07 0.12 -4.54
217871_s_at 217871_s_at NM_002415 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002415.1 /DEF=Homo sapiens macrophage migration inhibitory factor (glycosylation-inhibiting factor) (MIF), mRNA. /FEA=mRNA /GEN=MIF /PROD=macrophage migration inhibitory factor(glycosylation-inhibiting factor) /DB_XREF=gi:4505184 /UG=Hs.73798 macrophage migration inhibitory factor (glycosylation-inhibiting factor) /FL=gb:BC000447.1 gb:M25639.1 gb:L10612.1 gb:NM_002415.1 NM_002415 macrophage migration inhibitory factor (glycosylation-inhibiting factor) MIF 4282 NM_002415 0001516 // prostaglandin biosynthetic process // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002906 // negative regulation of mature B cell apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from direct assay /// 0007569 // cell aging // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010739 // positive regulation of protein kinase A signaling // inferred from direct assay /// 0019752 // carboxylic acid metabolic process // inferred from direct assay /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from direct assay /// 0031666 // positive regulation of lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032269 // negative regulation of cellular protein metabolic process // inferred from electronic annotation /// 0033033 // negative regulation of myeloid cell apoptotic process // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0043030 // regulation of macrophage activation // non-traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0045087 // innate immune response // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0050715 // positive regulation of cytokine secretion // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from direct assay /// 0061078 // positive regulation of prostaglandin secretion involved in immune response // inferred from electronic annotation /// 0061081 // positive regulation of myeloid leukocyte cytokine production involved in immune response // inferred from electronic annotation /// 0070207 // protein homotrimerization // inferred from physical interaction /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0071157 // negative regulation of cell cycle arrest // inferred from direct assay /// 0090238 // positive regulation of arachidonic acid secretion // inferred from electronic annotation /// 0090344 // negative regulation of cell aging // inferred from direct assay /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay /// 2000343 // positive regulation of chemokine (C-X-C motif) ligand 2 production // inferred from electronic annotation 0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004167 // dopachrome isomerase activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005125 // cytokine activity // inferred from direct assay /// 0005126 // cytokine receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // inferred from direct assay /// 0050178 // phenylpyruvate tautomerase activity // inferred from direct assay -213.30 1459.00 -2.09 0.07 0.12 -4.54
201553_s_at 201553_s_at NM_005561 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005561.2 /DEF=Homo sapiens lysosomal-associated membrane protein 1 (LAMP1), mRNA. /FEA=mRNA /GEN=LAMP1 /PROD=lysosomal-associated membrane protein 1 /DB_XREF=gi:7669500 /UG=Hs.150101 lysosomal-associated membrane protein 1 /FL=gb:J04182.1 gb:J03263.1 gb:NM_005561.2 NM_005561 lysosomal-associated membrane protein 1 LAMP1 3916 NM_005561 0006914 // autophagy // inferred from electronic annotation /// 0008626 // granzyme-mediated apoptotic signaling pathway // inferred from mutant phenotype /// 0043323 // positive regulation of natural killer cell degranulation // inferred from mutant phenotype /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0048102 // autophagic cell death // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0072594 // establishment of protein localization to organelle // inferred from mutant phenotype /// 0090160 // Golgi to lysosome transport // inferred from mutant phenotype /// 1902513 // regulation of organelle transport along microtubule // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005773 // vacuole // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044194 // cytolytic granule // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097208 // alveolar lamellar body // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction -358.60 1935.35 -2.09 0.07 0.12 -4.54
211796_s_at 211796_s_at AF043179 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF043179.1 /DEF=Homo sapiens T cell receptor beta chain (TCRBV13S1-TCRBJ2S1) mRNA, complete cds. /FEA=CDS /GEN=TCRBV13S1-TCRBJ2S1 /PROD=T cell receptor beta chain /DB_XREF=gi:3002924 /UG=Hs.303157 T cell receptor beta locus /FL=gb:AF043179.1 AF043179 T cell receptor beta constant 1 TRBC1 28639 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002230 // positive regulation of defense response to virus by host // inferred from direct assay /// 0002230 // positive regulation of defense response to virus by host // inferred from sequence or structural similarity /// 0002230 // positive regulation of defense response to virus by host // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from direct assay /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from sequence or structural similarity /// 0002827 // positive regulation of T-helper 1 type immune response // non-traceable author statement /// 0002827 // positive regulation of T-helper 1 type immune response // traceable author statement /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // non-traceable author statement /// 0010535 // positive regulation of activation of JAK2 kinase activity // inferred from direct assay /// 0031295 // T cell costimulation // traceable author statement /// 0032693 // negative regulation of interleukin-10 production // inferred from mutant phenotype /// 0032725 // positive regulation of granulocyte macrophage colony-stimulating factor production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // traceable author statement /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0032733 // positive regulation of interleukin-10 production // traceable author statement /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0032740 // positive regulation of interleukin-17 production // inferred from direct assay /// 0032760 // positive regulation of tumor necrosis factor production // inferred from mutant phenotype /// 0032816 // positive regulation of natural killer cell activation // inferred by curator /// 0032819 // positive regulation of natural killer cell proliferation // inferred from direct assay /// 0034105 // positive regulation of tissue remodeling // inferred by curator /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042104 // positive regulation of activated T cell proliferation // inferred from direct assay /// 0042346 // positive regulation of NF-kappaB import into nucleus // traceable author statement /// 0042510 // regulation of tyrosine phosphorylation of Stat1 protein // inferred from direct assay /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from direct assay /// 0042520 // positive regulation of tyrosine phosphorylation of Stat4 protein // inferred from direct assay /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from direct assay /// 0043382 // positive regulation of memory T cell differentiation // inferred from sequence or structural similarity /// 0043382 // positive regulation of memory T cell differentiation // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred by curator /// 0050776 // regulation of immune response // traceable author statement /// 0050829 // defense response to Gram-negative bacterium // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051135 // positive regulation of NK T cell activation // inferred by curator /// 0051135 // positive regulation of NK T cell activation // inferred from direct assay /// 0051142 // positive regulation of NK T cell proliferation // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from electronic annotation /// 2000318 // positive regulation of T-helper 17 type immune response // inferred from sequence or structural similarity /// 2000318 // positive regulation of T-helper 17 type immune response // inferred from electronic annotation /// 2000330 // positive regulation of T-helper 17 cell lineage commitment // inferred from sequence or structural similarity /// 2000330 // positive regulation of T-helper 17 cell lineage commitment // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070743 // interleukin-23 complex // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042287 // MHC protein binding // non-traceable author statement /// 0042605 // peptide antigen binding // non-traceable author statement /// 0045519 // interleukin-23 receptor binding // inferred from direct assay /// 0045519 // interleukin-23 receptor binding // inferred from electronic annotation 52.80 111.00 2.08 0.07 0.12 -4.54
210973_s_at 210973_s_at M63889 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M63889.1 /DEF=Human heparin-binding growth factor receptor (HBGF-R-alpha-a3) mRNA, complete cds. /FEA=mRNA /GEN=HBGF-R /PROD=heparin-binding growth factor receptor /DB_XREF=gi:183882 /UG=Hs.748 fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) /FL=gb:M63889.1 M63889 fibroblast growth factor receptor 1 FGFR1 2260 NM_001174063 /// NM_001174064 /// NM_001174065 /// NM_001174066 /// NM_001174067 /// NM_015850 /// NM_023105 /// NM_023106 /// NM_023107 /// NM_023108 /// NM_023109 /// NM_023110 /// NM_023111 /// NM_032191 /// XM_006716303 /// XM_006716304 /// XM_006716305 /// XM_006716306 /// XM_006716307 /// XM_006716308 /// XM_006716309 /// XM_006716310 /// XM_006716311 /// XM_006716312 /// XM_006716313 /// XM_006716314 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000165 // MAPK cascade // traceable author statement /// 0001501 // skeletal system development // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001759 // organ induction // inferred from electronic annotation /// 0001764 // neuron migration // traceable author statement /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from genetic interaction /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from physical interaction /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010518 // positive regulation of phospholipase activity // traceable author statement /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010863 // positive regulation of phospholipase C activity // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // traceable author statement /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0021769 // orbitofrontal cortex development // inferred from electronic annotation /// 0021847 // ventricular zone neuroblast division // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0035607 // fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042473 // outer ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0043009 // chordate embryonic development // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045595 // regulation of cell differentiation // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048339 // paraxial mesoderm development // inferred from electronic annotation /// 0048378 // regulation of lateral mesodermal cell fate specification // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048699 // generation of neurons // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // traceable author statement /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060117 // auditory receptor cell development // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005576 // extracellular region // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor-activated receptor activity // inferred from direct assay /// 0005007 // fibroblast growth factor-activated receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 40.07 116.66 2.08 0.07 0.12 -4.54
213453_x_at 213453_x_at BF689355 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF689355 /FEA=EST /DB_XREF=gi:11974763 /DB_XREF=est:602184994T1 /CLONE=IMAGE:4299431 /UG=Hs.169476 glyceraldehyde-3-phosphate dehydrogenase BF689355 glyceraldehyde-3-phosphate dehydrogenase GAPDH 2597 NM_001256799 /// NM_001289745 /// NM_001289746 /// NM_002046 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0035606 // peptidyl-cysteine S-trans-nitrosylation // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0051402 // neuron apoptotic process // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0004365 // glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity // inferred from sequence or structural similarity /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035605 // peptidyl-cysteine S-nitrosylase activity // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from physical interaction /// 0050661 // NADP binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation -1183.60 4204.30 -2.08 0.07 0.12 -4.54
201019_s_at 201019_s_at NM_001412 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001412.1 /DEF=Homo sapiens eukaryotic translation initiation factor 1A (EIF1A), mRNA. /FEA=mRNA /GEN=EIF1A /PROD=eukaryotic translation initiation factor 1A /DB_XREF=gi:4503498 /UG=Hs.4310 eukaryotic translation initiation factor 1A /FL=gb:BC000793.1 gb:L18960.1 gb:NM_001412.1 NM_001412 eukaryotic translation initiation factor 1A, X-linked EIF1AX 1964 NM_001412 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 127.68 458.71 2.08 0.07 0.12 -4.54
200667_at 200667_at BF448062 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF448062 /FEA=EST /DB_XREF=gi:11513123 /DB_XREF=est:7q97h09.x1 /CLONE=IMAGE:3706600 /UG=Hs.118797 ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC45) /FL=gb:U39318.1 gb:BC003395.1 gb:NM_003340.1 BF448062 ubiquitin-conjugating enzyme E2D 3 UBE2D3 7323 NM_003340 /// NM_181886 /// NM_181887 /// NM_181888 /// NM_181889 /// NM_181890 /// NM_181891 /// NM_181892 /// NM_181893 /// XM_005263200 /// XM_005263205 /// XM_006714297 /// XM_006714298 /// XM_006714299 /// XM_006714300 /// XM_006714301 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000209 // protein polyubiquitination // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0030509 // BMP signaling pathway // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -48.57 399.24 -2.08 0.07 0.12 -4.54
203648_at 203648_at NM_014760 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014760.1 /DEF=Homo sapiens KIAA0218 gene product (KIAA0218), mRNA. /FEA=mRNA /GEN=KIAA0218 /PROD=KIAA0218 gene product /DB_XREF=gi:7662007 /UG=Hs.75863 KIAA0218 gene product /FL=gb:D86972.1 gb:NM_014760.1 NM_014760 TatD DNase domain containing 2 TATDN2 9797 NM_014760 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0006308 // DNA catabolic process // not recorded /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0043229 // intracellular organelle // not recorded 0004518 // nuclease activity // inferred from electronic annotation /// 0004536 // deoxyribonuclease activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016888 // endodeoxyribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 29.62 118.79 2.08 0.07 0.12 -4.54
208625_s_at 208625_s_at AF104913 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF104913.1 /DEF=Homo sapiens eukaryotic protein synthesis initiation factor mRNA, complete cds. /FEA=mRNA /PROD=eukaryotic protein synthesis initiation factor /DB_XREF=gi:3941723 /UG=Hs.211568 eukaryotic translation initiation factor 4 gamma, 1 /FL=gb:AF104913.1 AF104913 eukaryotic translation initiation factor 4 gamma, 1 EIF4G1 1981 NM_001194946 /// NM_001194947 /// NM_001291157 /// NM_004953 /// NM_182917 /// NM_198241 /// NM_198242 /// NM_198244 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from mutant phenotype /// 0006446 // regulation of translational initiation // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 97.50 414.65 2.08 0.07 0.12 -4.54
209786_at 209786_at BC001282 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001282.1 /DEF=Homo sapiens, high-mobility group (nonhistone chromosomal) protein 17-like 3, clone MGC:5145, mRNA, complete cds. /FEA=mRNA /PROD=high-mobility group (nonhistone chromosomal)protein 17-like 3 /DB_XREF=gi:12654876 /UG=Hs.236774 high-mobility group (nonhistone chromosomal) protein 17-like 3 /FL=gb:BC001282.1 BC001282 high mobility group nucleosomal binding domain 4 HMGN4 10473 NM_006353 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from electronic annotation 32.35 201.35 2.07 0.07 0.12 -4.54
203187_at 203187_at NM_001380 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001380.1 /DEF=Homo sapiens dedicator of cyto-kinesis 1 (DOCK1), mRNA. /FEA=mRNA /GEN=DOCK1 /PROD=dedicator of cyto-kinesis 1 /DB_XREF=gi:4503354 /UG=Hs.82295 dedicator of cyto-kinesis 1 /FL=gb:D50857.1 gb:NM_001380.1 NM_001380 dedicator of cytokinesis 1 DOCK1 1793 NM_001290223 /// NM_001380 /// XM_006717681 /// XM_006717682 /// XM_006717683 0006909 // phagocytosis // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007229 // integrin-mediated signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016477 // cell migration // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation -40.50 201.72 -2.07 0.08 0.12 -4.54
217766_s_at 217766_s_at NM_014313 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014313.1 /DEF=Homo sapiens small membrane protein 1 (SMP1), mRNA. /FEA=mRNA /GEN=SMP1 /PROD=small membrane protein 1 /DB_XREF=gi:7657594 /UG=Hs.107979 small membrane protein 1 /FL=gb:AL136627.1 gb:AF081282.1 gb:NM_014313.1 NM_014313 transmembrane protein 50A TMEM50A 23585 NM_014313 /// XM_005245817 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 34.80 237.10 2.07 0.08 0.12 -4.54
208896_at 208896_at X98743 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X98743.1 /DEF=H.sapiens mRNA for RNA helicase (Myc-regulated dead box protein). /FEA=mRNA /PROD=RNA helicase /DB_XREF=gi:1498228 /UG=Hs.100555 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 18 (Myc-regulated) /FL=gb:BC001238.1 gb:BC003360.1 X98743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 DDX18 8886 NM_006773 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 29.20 108.78 2.07 0.08 0.12 -4.54
204604_at 204604_at NM_012395 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012395.1 /DEF=Homo sapiens PFTAIRE protein kinase 1 (PFTK1), mRNA. /FEA=mRNA /GEN=PFTK1 /PROD=PFTAIRE protein kinase 1 /DB_XREF=gi:6912583 /UG=Hs.57856 PFTAIRE protein kinase 1 /FL=gb:AB020641.1 gb:NM_012395.1 NM_012395 cyclin-dependent kinase 14 CDK14 5218 NM_001287135 /// NM_001287136 /// NM_001287137 /// NM_012395 /// XM_005250435 /// XM_005250436 /// XM_005250438 /// XM_005250439 /// XM_006716026 0000086 // G2/M transition of mitotic cell cycle // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0060828 // regulation of canonical Wnt signaling pathway // inferred from direct assay 0000308 // cytoplasmic cyclin-dependent protein kinase holoenzyme complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from physical interaction 38.67 162.64 2.07 0.08 0.12 -4.54
220155_s_at 220155_s_at NM_023924 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023924.1 /DEF=Homo sapiens hypothetical protein FLJ13441 (FLJ13441), mRNA. /FEA=mRNA /GEN=FLJ13441 /PROD=hypothetical protein FLJ13441 /DB_XREF=gi:12965190 /UG=Hs.232146 hypothetical protein FLJ13441 /FL=gb:NM_023924.1 NM_023924 bromodomain containing 9 BRD9 65980 NM_001009877 /// NM_023924 /// NR_027633 /// XM_006714492 /// XM_006714493 /// XM_006714494 /// XR_427662 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0003676 // nucleic acid binding // non-traceable author statement /// 0070577 // lysine-acetylated histone binding // inferred from direct assay 25.63 156.24 2.07 0.08 0.12 -4.54
202433_at 202433_at NM_005827 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005827.1 /DEF=Homo sapiens UDP-galactose transporter related (UGTREL1), mRNA. /FEA=mRNA /GEN=UGTREL1 /PROD=UDP-galactose transporter related /DB_XREF=gi:5032212 /UG=Hs.154073 UDP-galactose transporter related /FL=gb:D87989.1 gb:NM_005827.1 NM_005827 solute carrier family 35, member B1 SLC35B1 10237 NM_001278784 /// NM_005827 /// XM_005256929 /// XM_006721632 0006810 // transport // traceable author statement /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0072334 // UDP-galactose transmembrane transport // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // traceable author statement 0005459 // UDP-galactose transmembrane transporter activity // traceable author statement 50.97 379.66 2.07 0.08 0.12 -4.54
208308_s_at 208308_s_at NM_000175 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000175.1 /DEF=Homo sapiens glucose phosphate isomerase (GPI), mRNA. /FEA=mRNA /GEN=GPI /PROD=glucose phosphate isomerase /DB_XREF=gi:4504086 /UG=Hs.180532 glucose phosphate isomerase /FL=gb:BC004982.1 gb:K03515.1 gb:NM_000175.1 NM_000175 glucose-6-phosphate isomerase GPI 2821 NM_000175 /// NM_001184722 /// NM_001289789 /// NM_001289790 /// XM_005258763 /// XM_005258764 /// XM_006723148 0001525 // angiogenesis // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0006959 // humoral immune response // traceable author statement /// 0007599 // hemostasis // traceable author statement /// 0007611 // learning or memory // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046185 // aldehyde catabolic process // inferred from electronic annotation /// 0051156 // glucose 6-phosphate metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004347 // glucose-6-phosphate isomerase activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from electronic annotation -145.27 503.39 -2.07 0.08 0.12 -4.54
218866_s_at 218866_s_at NM_016310 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016310.1 /DEF=Homo sapiens polymerase (RNA) III (DNA directed) polypeptide K (12.3 kDa) (POLR3K), mRNA. /FEA=mRNA /GEN=POLR3K /PROD=polymerase (RNA) III (DNA directed) polypeptideK (12.3 kDa) /DB_XREF=gi:7706498 /UG=Hs.110857 polymerase (RNA) III (DNA directed) polypeptide K (12.3 kDa) /FL=gb:AF060223.1 gb:AF051316.1 gb:NM_016310.1 NM_016310 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa POLR3K 51728 NM_016310 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006385 // transcription elongation from RNA polymerase III promoter // traceable author statement /// 0006386 // termination of RNA polymerase III transcription // not recorded /// 0006386 // termination of RNA polymerase III transcription // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005666 // DNA-directed RNA polymerase III complex // not recorded /// 0005829 // cytosol // traceable author statement 0001056 // RNA polymerase III activity // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 28.80 86.95 2.07 0.08 0.12 -4.54
211684_s_at 211684_s_at AF250307 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF250307.1 /DEF=Homo sapiens cytoplasmic dynein intermediate chain 2C mRNA, complete cds. /FEA=mRNA /PROD=cytoplasmic dynein intermediate chain 2C /DB_XREF=gi:13649464 /FL=gb:AF250307.1 AF250307 dynein, cytoplasmic 1, intermediate chain 2 DYNC1I2 1781 NM_001271785 /// NM_001271786 /// NM_001271787 /// NM_001271788 /// NM_001271789 /// NM_001271790 /// NM_001378 /// XM_005246363 /// XM_005246364 /// XM_005246365 /// XM_005246366 /// XM_005246367 /// XM_005246369 /// XM_006712347 /// XM_006712348 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement 0005737 // cytoplasm // non-traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0030286 // dynein complex // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 128.48 717.14 2.06 0.08 0.12 -4.54
201914_s_at 201914_s_at AK001465 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001465.1 /DEF=Homo sapiens cDNA FLJ10603 fis, clone NT2RP2005012, highly similar to Homo sapiens mRNA for SEC63 protein. /FEA=mRNA /DB_XREF=gi:7022740 /UG=Hs.31575 SEC63, endoplasmic reticulum translocon component (S. cerevisiae) like /FL=gb:AF100141.1 gb:NM_007214.1 AK001465 SEC63 homolog (S. cerevisiae) SEC63 11231 NM_007214 /// NM_018529 0001889 // liver development // inferred from electronic annotation /// 0006612 // protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from mutant phenotype /// 0006620 // posttranslational protein targeting to membrane // inferred from mutant phenotype /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0031204 // posttranslational protein targeting to membrane, translocation // inferred from electronic annotation /// 0072001 // renal system development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -32.08 146.99 -2.05 0.08 0.12 -4.54
203232_s_at 203232_s_at NM_000332 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000332.1 /DEF=Homo sapiens spinocerebellar ataxia 1 (olivopontocerebellar ataxia 1, autosomal dominant, ataxin 1) (SCA1), mRNA. /FEA=mRNA /GEN=SCA1 /PROD=ataxin 1 /DB_XREF=gi:4506792 /UG=Hs.74520 spinocerebellar ataxia 1 (olivopontocerebellar ataxia 1, autosomal dominant, ataxin 1) /FL=gb:NM_000332.1 NM_000332 ataxin 1 ATXN1 6310 NM_000332 /// NM_001128164 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051168 // nuclear export // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0042272 // nuclear RNA export factor complex // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0034046 // poly(G) binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043621 // protein self-association // inferred from direct assay 32.27 72.11 2.05 0.08 0.12 -4.54
212697_at 212697_at AL515874 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL515874 /FEA=EST /DB_XREF=gi:12779367 /DB_XREF=est:AL515874 /CLONE=CS0DA001YF06 (3 prime) /UG=Hs.83086 Homo sapiens GT212 mRNA AL515874 family with sequence similarity 134, member C FAM134C 162427 NM_178126 /// NR_026697 /// XM_006721729 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -32.10 233.03 -2.05 0.08 0.12 -4.54
217347_at 217347_at Z82202 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z82202 /DEF=Human DNA sequence from clone RP1-34P24 on chromosome 22 Contains a pseudogene similar to ribosomal protein L35, ESTs, STSs and GSSs /FEA=CDS /DB_XREF=gi:4107193 /UG=Hs.247778 Human DNA sequence from clone RP1-34P24 on chromosome 22 Contains a pseudogene similar to ribosomal protein L35, ESTs, STSs and GSSs Z82202 ribosomal protein L35 pseudogene 8 /// RPL35P8 /// RPL35P8 -32.65 98.05 -2.05 0.08 0.12 -4.54
215464_s_at 215464_s_at AK001327 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001327.1 /DEF=Homo sapiens cDNA FLJ10465 fis, clone NT2RP1001616. /FEA=mRNA /DB_XREF=gi:7022515 /UG=Hs.12956 Tax interaction protein 1 AK001327 purinergic receptor P2X, ligand-gated ion channel, 5 /// P2RX5-TAX1BP3 readthrough (NMD candidate) /// Tax1 (human T-cell leukemia virus type I) binding protein 3 P2RX5 /// P2RX5-TAX1BP3 /// TAX1BP3 5026 /// 30851 /// 100533970 NM_001204519 /// NM_001204520 /// NM_001204698 /// NM_002561 /// NM_014604 /// NM_175080 /// NM_175081 /// NR_037928 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from direct assay /// 0007399 // nervous system development // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // non-traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0032864 // activation of Cdc42 GTPase activity // inferred from direct assay /// 0034220 // ion transmembrane transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0035590 // purinergic nucleotide receptor signaling pathway // inferred from electronic annotation /// 0035590 // purinergic nucleotide receptor signaling pathway // non-traceable author statement /// 0050850 // positive regulation of calcium-mediated signaling // non-traceable author statement /// 2000009 // negative regulation of protein localization to cell surface // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005639 // integral component of nuclear inner membrane // not recorded /// 0005737 // cytoplasm // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001614 // purinergic nucleotide receptor activity // non-traceable author statement /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0004931 // extracellular ATP-gated cation channel activity // non-traceable author statement /// 0005216 // ion channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // non-traceable author statement /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction 58.42 424.11 2.05 0.08 0.12 -4.54
212792_at 212792_at AB020684 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB020684.1 /DEF=Homo sapiens mRNA for KIAA0877 protein, partial cds. /FEA=mRNA /GEN=KIAA0877 /PROD=KIAA0877 protein /DB_XREF=gi:4240242 /UG=Hs.11217 KIAA0877 protein AB020684 dpy-19-like 1 (C. elegans) DPY19L1 23333 NM_015283 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 30.27 148.29 2.05 0.08 0.12 -4.54
212149_at 212149_at AW470003 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW470003 /FEA=EST /DB_XREF=gi:7040109 /DB_XREF=est:xr27f05.x1 /CLONE=IMAGE:2761377 /UG=Hs.84087 KIAA0143 protein AW470003 EFR3 homolog A (S. cerevisiae) EFR3A 23167 NM_015137 /// XM_005250849 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation 128.18 464.01 2.05 0.08 0.12 -4.54
208595_s_at 208595_s_at NM_015845 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015845.1 /DEF=Homo sapiens methyl-CpG binding domain protein 1 (MBD1), transcript variant 2, mRNA. /FEA=CDS /GEN=MBD1 /PROD=methyl-CpG binding domain protein 1, isoform 2 /DB_XREF=gi:7710136 /UG=Hs.6211 methyl-CpG binding domain protein 1 /FL=gb:AF078831.1 gb:NM_015845.1 NM_015845 methyl-CpG binding domain protein 1 MBD1 4152 NM_001204136 /// NM_001204137 /// NM_001204138 /// NM_001204139 /// NM_001204140 /// NM_001204141 /// NM_001204142 /// NM_001204143 /// NM_001204151 /// NM_002384 /// NM_015844 /// NM_015845 /// NM_015846 /// NM_015847 /// XM_005258262 /// XM_005258264 /// XM_005258265 /// XM_005258268 /// XM_005258271 /// XM_005258272 /// XM_005258274 /// XM_006722452 /// XM_006722453 /// XM_006722454 /// XM_006722455 /// XM_006722456 /// XM_006722457 /// XM_006722458 /// XM_006722459 /// XM_006722460 /// XM_006722461 /// XM_006722462 /// XM_006722463 /// XM_006722464 /// XM_006722465 /// XM_006722466 /// XM_006722467 /// XM_006722468 /// XM_006722469 /// XM_006722470 /// XM_006722471 /// XM_006722472 /// XM_006722473 /// XM_006722474 /// XM_006722475 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0000785 // chromatin // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008327 // methyl-CpG binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 26.75 35.15 2.05 0.08 0.12 -4.54
201673_s_at 201673_s_at NM_002103 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002103.1 /DEF=Homo sapiens glycogen synthase 1 (muscle) (GYS1), mRNA. /FEA=mRNA /GEN=GYS1 /PROD=glycogen synthase 1 (muscle) /DB_XREF=gi:4504232 /UG=Hs.772 glycogen synthase 1 (muscle) /FL=gb:U32573.1 gb:BC002617.1 gb:J04501.1 gb:NM_002103.1 NM_002103 glycogen synthase 1 (muscle) GYS1 2997 NM_001161587 /// NM_002103 /// NR_027763 0005975 // carbohydrate metabolic process // traceable author statement /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from direct assay /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016234 // inclusion body // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004373 // glycogen (starch) synthase activity // not recorded /// 0004373 // glycogen (starch) synthase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005536 // glucose binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0061547 // glycogen synthase activity, transferring glucose-1-phosphate // not recorded -39.10 264.50 -2.04 0.08 0.12 -4.54
209357_at 209357_at AF109161 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF109161.1 /DEF=Homo sapiens p35srj (MRG1) mRNA, complete cds. /FEA=mRNA /GEN=MRG1 /PROD=p35srj /DB_XREF=gi:4193945 /UG=Hs.82071 Cbpp300-interacting transactivator, with GluAsp-rich carboxy-terminal domain, 2 /FL=gb:BC004377.1 gb:AF109161.1 AF109161 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 CITED2 10370 NM_001168388 /// NM_001168389 /// NM_006079 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001841 // neural tube formation // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001889 // liver development // inferred from sequence or structural similarity /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001944 // vasculature development // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0002089 // lens morphogenesis in camera-type eye // inferred from electronic annotation /// 0002244 // hematopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002521 // leukocyte differentiation // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003156 // regulation of organ formation // inferred from sequence or structural similarity /// 0003197 // endocardial cushion development // inferred from electronic annotation /// 0003281 // ventricular septum development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from sequence or structural similarity /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from mutant phenotype /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007530 // sex determination // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0008584 // male gonad development // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0021602 // cranial nerve morphogenesis // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0030851 // granulocyte differentiation // inferred from electronic annotation /// 0034405 // response to fluid shear stress // inferred from mutant phenotype /// 0035360 // positive regulation of peroxisome proliferator activated receptor signaling pathway // inferred from direct assay /// 0035802 // adrenal cortex formation // inferred from sequence or structural similarity /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043627 // response to estrogen // inferred from direct assay /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0046697 // decidualization // inferred from electronic annotation /// 0048536 // spleen development // inferred from sequence or structural similarity /// 0048538 // thymus development // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048821 // erythrocyte development // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060411 // cardiac septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060971 // embryonic heart tube left/right pattern formation // inferred from sequence or structural similarity /// 0061156 // pulmonary artery morphogenesis // inferred from electronic annotation /// 0061308 // cardiac neural crest cell development involved in heart development // inferred from electronic annotation /// 0061371 // determination of heart left/right asymmetry // inferred from electronic annotation /// 0061428 // negative regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from direct assay /// 0070986 // left/right axis specification // inferred from sequence or structural similarity /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 1900164 // nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry // inferred from sequence or structural similarity /// 2000020 // positive regulation of male gonad development // inferred from sequence or structural similarity /// 2001141 // regulation of RNA biosynthetic process // inferred from direct assay 0000790 // nuclear chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from mutant phenotype 0001102 // RNA polymerase II activating transcription factor binding // inferred from electronic annotation /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from electronic annotation /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0050693 // LBD domain binding // inferred from physical interaction -38.85 153.03 -2.04 0.08 0.12 -4.54
221220_s_at 221220_s_at NM_017988 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017988.1 /DEF=Homo sapiens hypothetical protein FLJ10074 (FLJ10074), mRNA. /FEA=mRNA /GEN=FLJ10074 /PROD=hypothetical protein FLJ10074 /DB_XREF=gi:8922217 /UG=Hs.71573 hypothetical protein FLJ10074 /FL=gb:NM_017988.1 NM_017988 SCY1-like 2 (S. cerevisiae) SCYL2 55681 NM_017988 /// XM_005269018 /// XM_006719497 0002092 // positive regulation of receptor internalization // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from direct assay /// 2000286 // receptor internalization involved in canonical Wnt signaling pathway // inferred from direct assay /// 2000370 // positive regulation of clathrin-mediated endocytosis // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -40.47 98.76 -2.04 0.08 0.12 -4.54
203843_at 203843_at AA906056 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA906056 /FEA=EST /DB_XREF=gi:3041179 /DB_XREF=est:oj90d06.s1 /CLONE=IMAGE:1505579 /UG=Hs.173965 ribosomal protein S6 kinase, 90kD, polypeptide 3 /FL=gb:U08316.1 gb:NM_004586.1 AA906056 ribosomal protein S6 kinase, 90kDa, polypeptide 3 RPS6KA3 6197 NM_004586 /// XM_005274573 /// XM_005274575 /// XM_005274576 /// XM_005274577 /// XM_006724505 /// XM_006724506 /// XM_006724507 0001501 // skeletal system development // traceable author statement /// 0002224 // toll-like receptor signaling pathway // inferred from sequence or structural similarity /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007417 // central nervous system development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from sequence or structural similarity /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043555 // regulation of translation in response to stress // traceable author statement /// 0043620 // regulation of DNA-templated transcription in response to stress // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045597 // positive regulation of cell differentiation // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -37.15 239.53 -2.04 0.08 0.12 -4.54
203007_x_at 203007_x_at AF077198 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF077198.1 /DEF=Homo sapiens lysophospholipase mRNA, complete cds. /FEA=mRNA /PROD=lysophospholipase /DB_XREF=gi:4679009 /UG=Hs.12540 lysophospholipase I /FL=gb:AF081281.1 gb:AF077198.1 gb:NM_006330.1 gb:AF291053.1 AF077198 lysophospholipase I LYPLA1 10434 NM_001279356 /// NM_001279357 /// NM_001279358 /// NM_001279359 /// NM_001279360 /// NM_006330 /// XM_005251127 /// XM_006716417 /// XR_428339 0002084 // protein depalmitoylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042997 // negative regulation of Golgi to plasma membrane protein transport // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004622 // lysophospholipase activity // traceable author statement /// 0008474 // palmitoyl-(protein) hydrolase activity // inferred from mutant phenotype /// 0008474 // palmitoyl-(protein) hydrolase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation 98.95 352.50 2.04 0.08 0.12 -4.54
212606_at 212606_at AL536319 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL536319 /FEA=EST /DB_XREF=gi:12799812 /DB_XREF=est:AL536319 /CLONE=CS0DF015YG13 (3 prime) /UG=Hs.198135 KIAA0993 protein AL536319 WD repeat and FYVE domain containing 3 WDFY3 23001 NM_014991 /// NM_178583 /// NM_178585 /// XM_005262858 /// XM_006714151 /// XM_006714152 0008152 // metabolic process // inferred from electronic annotation /// 0016239 // positive regulation of macroautophagy // inferred from mutant phenotype /// 0035973 // aggrephagy // inferred from mutant phenotype 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005776 // autophagic vacuole // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016234 // inclusion body // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0019898 // extrinsic component of membrane // inferred from direct assay /// 0034274 // Atg12-Atg5-Atg16 complex // inferred from direct assay 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005545 // 1-phosphatidylinositol binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 58.15 166.00 2.04 0.08 0.12 -4.54
218910_at 218910_at NM_018075 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018075.1 /DEF=Homo sapiens hypothetical protein FLJ10375 (FLJ10375), mRNA. /FEA=mRNA /GEN=FLJ10375 /PROD=hypothetical protein FLJ10375 /DB_XREF=gi:8922383 /UG=Hs.319088 hypothetical protein FLJ10375 /FL=gb:NM_018075.1 NM_018075 anoctamin 10 ANO10 55129 NM_001204831 /// NM_001204832 /// NM_001204833 /// NM_001204834 /// NM_018075 /// XM_005265265 0006812 // cation transport // inferred from direct assay /// 0006821 // chloride transport // inferred from direct assay /// 0008219 // cell death // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 1902476 // chloride transmembrane transport // inferred from direct assay 0005622 // intracellular // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005227 // calcium activated cation channel activity // inferred from direct assay /// 0005229 // intracellular calcium activated chloride channel activity // inferred from direct assay 38.97 100.96 2.04 0.08 0.12 -4.54
211542_x_at 211542_x_at BC004334 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004334.1 /DEF=Homo sapiens, ribosomal protein S10, clone MGC:10943, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein S10 /DB_XREF=gi:13279259 /UG=Hs.76230 ribosomal protein S10 /FL=gb:BC004334.1 BC004334 ribosomal protein S10 RPS10 6204 NM_001014 /// NM_001203245 /// NM_001204091 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015961 // diadenosine polyphosphate catabolic process // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from electronic annotation /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation -1000.70 5440.25 -2.04 0.08 0.12 -4.54
211968_s_at 211968_s_at AI962933 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI962933 /FEA=EST /DB_XREF=gi:5755646 /DB_XREF=est:wt25a07.x1 /CLONE=IMAGE:2508468 /UG=Hs.289088 heat shock 90kD protein 1, alpha /FL=gb:NM_005348.1 AI962933 heat shock protein 90kDa alpha (cytosolic), class A member 1 HSP90AA1 3320 NM_001017963 /// NM_005348 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001764 // neuron migration // inferred from electronic annotation /// 0003009 // skeletal muscle contraction // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006457 // protein folding // inferred from electronic annotation /// 0006839 // mitochondrial transport // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009408 // response to heat // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0010592 // positive regulation of lamellipodium assembly // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042026 // protein refolding // traceable author statement /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045040 // protein import into mitochondrial outer membrane // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051131 // chaperone-mediated protein complex assembly // inferred from direct assay /// 0060452 // positive regulation of cardiac muscle contraction // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // traceable author statement /// 0002134 // UTP binding // inferred from electronic annotation /// 0002135 // CTP binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017098 // sulfonylurea receptor binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0030235 // nitric-oxide synthase regulator activity // inferred from direct assay /// 0030911 // TPR domain binding // inferred from direct assay /// 0030911 // TPR domain binding // traceable author statement /// 0032564 // dATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0044325 // ion channel binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 205.72 1257.54 2.04 0.08 0.12 -4.54
221739_at 221739_at AL524093 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL524093 /FEA=EST /DB_XREF=gi:12787586 /DB_XREF=est:AL524093 /CLONE=CS0DC002YI04 (5 prime) /UG=Hs.10927 hypothetical protein EUROIMAGE1875335 AL524093 chromosome 19 open reading frame 10 C19orf10 56005 NM_019107 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay -119.90 604.62 -2.03 0.08 0.12 -4.54
202276_at 202276_at NM_006304 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006304.1 /DEF=Homo sapiens Deleted in split-handsplit-foot 1 region (DSS1), mRNA. /FEA=mRNA /GEN=DSS1 /PROD=deleted in split-handsplit-foot 1 region /DB_XREF=gi:5453639 /UG=Hs.85215 Deleted in split-handsplit-foot 1 region /FL=gb:U41515.1 gb:NM_006304.1 NM_006304 split hand/foot malformation (ectrodactyly) type 1 SHFM1 7979 NM_006304 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006508 // proteolysis // inferred from direct assay 0000502 // proteasome complex // inferred from direct assay /// 0032039 // integrator complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from direct assay 103.45 493.45 2.03 0.08 0.12 -4.54
200775_s_at 200775_s_at BC000355 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000355.1 /DEF=Homo sapiens, heterogeneous nuclear ribonucleoprotein K, clone MGC:8660, mRNA, complete cds. /FEA=mRNA /PROD=heterogeneous nuclear ribonucleoprotein K /DB_XREF=gi:12653174 /UG=Hs.129548 heterogeneous nuclear ribonucleoprotein K /FL=gb:BC000355.1 gb:NM_002140.1 BC000355 heterogeneous nuclear ribonucleoprotein K HNRNPK 3190 NM_002140 /// NM_031262 /// NM_031263 /// XM_005251960 /// XM_005251961 /// XM_005251963 /// XM_005251964 /// XM_005251965 /// XM_005251966 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010988 // regulation of low-density lipoprotein particle clearance // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045716 // positive regulation of low-density lipoprotein particle receptor biosynthetic process // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0072369 // regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0002102 // podosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from mutant phenotype /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from mutant phenotype /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -189.53 1502.74 -2.03 0.08 0.13 -4.54
212194_s_at 212194_s_at AI418892 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI418892 /FEA=EST /DB_XREF=gi:4264823 /DB_XREF=est:tf43c01.x1 /CLONE=IMAGE:2098944 /UG=Hs.79305 KIAA0255 gene product AI418892 transmembrane 9 superfamily protein member 4 TM9SF4 9777 NM_014742 /// XM_005260622 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -26.50 132.55 -2.03 0.08 0.13 -4.54
218075_at 218075_at NM_015665 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015665.1 /DEF=Homo sapiens aladin (AAAS), mRNA. /FEA=mRNA /GEN=AAAS /PROD=aladin /DB_XREF=gi:12962936 /UG=Hs.125262 aladin /FL=gb:BC000659.1 gb:NM_015665.1 gb:AF226048.1 NM_015665 achalasia, adrenocortical insufficiency, alacrimia AAAS 8086 NM_001173466 /// NM_015665 /// XM_006719617 /// XM_006719618 /// XM_006719619 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007612 // learning // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0009566 // fertilization // inferred from electronic annotation /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046822 // regulation of nucleocytoplasmic transport // non-traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 27.48 60.79 2.03 0.08 0.13 -4.54
209451_at 209451_at U59863 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U59863.1 /DEF=Human TRAF-interacting protein I-TRAF mRNA, complete cds. /FEA=mRNA /PROD=I-TRAF /DB_XREF=gi:1518017 /UG=Hs.146847 TRAF family member-associated NFKB activator /FL=gb:U59863.1 U59863 TRAF family member-associated NFKB activator TANK 10010 NM_001199135 /// NM_004180 /// NM_133484 /// XM_005246206 /// XM_005246207 /// XM_005246208 /// XM_005246210 /// XM_005246211 0007165 // signal transduction // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 69.20 173.57 2.03 0.08 0.13 -4.54
221884_at 221884_at BE466525 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE466525 /FEA=EST /DB_XREF=gi:9512223 /DB_XREF=est:hx94b10.x1 /CLONE=IMAGE:3195451 /UG=Hs.234773 Homo sapiens cDNA: FLJ22281 fis, clone HRC03849, highly similar to S69002 human mRNA for AML1-EVI-1 BE466525 MDS1 and EVI1 complex locus MECOM 2122 NM_001105077 /// NM_001105078 /// NM_001163999 /// NM_001164000 /// NM_001205194 /// NM_004991 /// NM_005241 /// XM_005247213 /// XM_005247214 /// XM_005247215 /// XM_005247216 /// XM_005247219 /// XM_005247220 /// XM_005247221 /// XM_005247223 /// XM_005247224 /// XM_005247225 /// XM_005247226 /// XM_006713536 /// XM_006713537 0001501 // skeletal system development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001780 // neutrophil homeostasis // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0002318 // myeloid progenitor cell differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0009605 // response to external stimulus // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from direct assay /// 0030097 // hemopoiesis // traceable author statement /// 0030099 // myeloid cell differentiation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030853 // negative regulation of granulocyte differentiation // inferred from mutant phenotype /// 0030854 // positive regulation of granulocyte differentiation // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043069 // negative regulation of programmed cell death // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from mutant phenotype /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048935 // peripheral nervous system neuron development // traceable author statement /// 0051726 // regulation of cell cycle // inferred from direct assay /// 0060039 // pericardium development // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0071336 // regulation of hair follicle cell proliferation // inferred from electronic annotation /// 0071425 // hematopoietic stem cell proliferation // inferred from sequence or structural similarity /// 0072001 // renal system development // inferred from electronic annotation /// 2000872 // positive regulation of progesterone secretion // inferred from electronic annotation 0000118 // histone deacetylase complex // inferred from direct assay /// 0005604 // basement membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000975 // regulatory region DNA binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0070491 // repressing transcription factor binding // inferred from electronic annotation 36.05 201.15 2.03 0.08 0.13 -4.54
210470_x_at 210470_x_at BC003129 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003129.1 /DEF=Homo sapiens, non-POU-domain-containing, octamer-binding, clone MGC:3380, mRNA, complete cds. /FEA=mRNA /PROD=non-POU-domain-containing, octamer-binding /DB_XREF=gi:13111916 /UG=Hs.172207 non-POU-domain-containing, octamer-binding /FL=gb:BC003129.1 BC003129 non-POU domain containing, octamer-binding NONO 4841 NM_001145408 /// NM_001145409 /// NM_001145410 /// NM_007363 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0042382 // paraspeckles // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -145.88 703.56 -2.03 0.08 0.13 -4.54
210933_s_at 210933_s_at BC004908 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004908.1 /DEF=Homo sapiens, clone MGC:4655, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:4655) /DB_XREF=gi:13436196 /UG=Hs.326737 Homo sapiens, clone MGC:4655, mRNA, complete cds /FL=gb:BC004908.1 BC004908 fascin actin-bundling protein 1 FSCN1 6624 NM_003088 0008283 // cell proliferation // traceable author statement /// 0016477 // cell migration // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0048870 // cell motility // inferred from direct assay /// 0051017 // actin filament bundle assembly // inferred from direct assay 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071437 // invadopodium // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from direct assay /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from direct assay 78.10 313.25 2.03 0.08 0.13 -4.54
202597_at 202597_at AU144284 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU144284 /FEA=EST /DB_XREF=gi:11005805 /DB_XREF=est:AU144284 /CLONE=HEMBA1001439 /UG=Hs.11801 interferon regulatory factor 6 /FL=gb:AF027292.1 gb:NM_006147.1 AU144284 interferon regulatory factor 6 IRF6 3664 NM_001206696 /// NM_006147 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048468 // cell development // inferred from electronic annotation /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060644 // mammary gland epithelial cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000975 // regulatory region DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction 36.82 148.06 2.03 0.08 0.13 -4.54
211719_x_at 211719_x_at BC005858 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005858.1 /DEF=Homo sapiens, clone MGC:3255, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:3255) /DB_XREF=gi:13543399 /FL=gb:BC005858.1 BC005858 fibronectin 1 FN1 2335 NM_002026 /// NM_054034 /// NM_212474 /// NM_212475 /// NM_212476 /// NM_212478 /// NM_212482 /// XM_005246397 /// XM_005246398 /// XM_005246399 /// XM_005246400 /// XM_005246401 /// XM_005246402 /// XM_005246403 /// XM_005246404 /// XM_005246405 /// XM_005246406 /// XM_005246407 /// XM_005246408 /// XM_005246409 /// XM_005246410 /// XM_005246411 /// XM_005246412 /// XM_005246413 /// XM_005246414 /// XM_005246415 /// XM_005246416 /// XM_005246417 0001525 // angiogenesis // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007161 // calcium-independent cell-matrix adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009611 // response to wounding // non-traceable author statement /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0016477 // cell migration // non-traceable author statement /// 0018149 // peptide cross-linking // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0042060 // wound healing // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from direct assay /// 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0008201 // heparin binding // non-traceable author statement /// 0016504 // peptidase activator activity // inferred from electronic annotation -466.10 3238.70 -2.03 0.08 0.13 -4.54
203490_at 203490_at NM_001421 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001421.1 /DEF=Homo sapiens E74-like factor 4 (ets domain transcription factor) (ELF4), mRNA. /FEA=mRNA /GEN=ELF4 /PROD=E74-like factor 4 (ets domain transcriptionfactor) /DB_XREF=gi:4503554 /UG=Hs.151139 E74-like factor 4 (ets domain transcription factor) /FL=gb:U32645.1 gb:AF000670.1 gb:NM_001421.1 NM_001421 E74-like factor 4 (ets domain transcription factor) ELF4 2000 NM_001127197 /// NM_001421 /// XM_005262389 0001787 // natural killer cell proliferation // inferred from sequence or structural similarity /// 0001866 // NK T cell proliferation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 27.58 56.69 2.03 0.08 0.13 -4.54
208675_s_at 208675_s_at D29643 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D29643.1 /DEF=Human mRNA for KIAA0115 gene, complete cds. /FEA=mRNA /GEN=KIAA0115 /DB_XREF=gi:473936 /UG=Hs.34789 dolichyl-diphosphooligosaccharide-protein glycosyltransferase /FL=gb:BC002594.1 gb:D29643.1 gb:NM_005216.1 D29643 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) DDOST 1650 NM_005216 0006412 // translation // traceable author statement /// 0006486 // protein glycosylation // inferred from sequence or structural similarity /// 0006487 // protein N-linked glycosylation // inferred from direct assay /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // inferred by curator /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0034097 // response to cytokine // inferred from direct assay /// 0042110 // T cell activation // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0008250 // oligosaccharyltransferase complex // inferred from sequence or structural similarity /// 0008250 // oligosaccharyltransferase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004576 // oligosaccharyl transferase activity // inferred from sequence or structural similarity /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred by curator /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -375.75 1198.45 -2.03 0.08 0.13 -4.54
90610_at 90610_at AI654857 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI654857:wb65b10.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2310523 /clone_end=3' /gb=AI654857 /gi=4738836 /ug=Hs.160115 /len=621 AI654857 leucine-rich repeats and calponin homology (CH) domain containing 4 LRCH4 4034 NM_001289934 /// NM_002319 /// XM_005250346 /// XM_005250347 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 40.85 62.95 2.03 0.08 0.13 -4.55
200956_s_at 200956_s_at BE795648 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE795648 /FEA=EST /DB_XREF=gi:10216846 /DB_XREF=est:601590631F1 /CLONE=IMAGE:3945006 /UG=Hs.79162 structure specific recognition protein 1 /FL=gb:BC005116.1 gb:M86737.1 gb:NM_003146.1 BE795648 structure specific recognition protein 1 SSRP1 6749 NM_003146 /// XM_005274194 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -43.43 230.09 -2.02 0.08 0.13 -4.55
201403_s_at 201403_s_at NM_004528 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004528.1 /DEF=Homo sapiens microsomal glutathione S-transferase 3 (MGST3), mRNA. /FEA=mRNA /GEN=MGST3 /PROD=microsomal glutathione S-transferase 3 /DB_XREF=gi:4758713 /UG=Hs.111811 microsomal glutathione S-transferase 3 /FL=gb:BC000505.1 gb:BC003034.1 gb:AF026977.1 gb:NM_004528.1 NM_004528 microsomal glutathione S-transferase 3 MGST3 4259 NM_004528 /// XM_005245174 0006629 // lipid metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // not recorded /// 0055114 // oxidation-reduction process // traceable author statement /// 1901687 // glutathione derivative biosynthetic process // traceable author statement 0005635 // nuclear envelope // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004364 // glutathione transferase activity // not recorded /// 0004601 // peroxidase activity // traceable author statement /// 0004602 // glutathione peroxidase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation -40.10 674.67 -2.02 0.08 0.13 -4.55
201091_s_at 201091_s_at BE748755 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE748755 /FEA=EST /DB_XREF=gi:10162747 /DB_XREF=est:601571933T1 /CLONE=IMAGE:3838737 /UG=Hs.278554 heterochromatin-like protein 1 /FL=gb:AF136630.1 gb:NM_016587.1 BE748755 chromobox homolog 3 CBX3 11335 NM_007276 /// NM_016587 /// XM_005249611 /// XM_005249612 0006338 // chromatin remodeling // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0048511 // rhythmic process // inferred from electronic annotation 0000779 // condensed chromosome, centromeric region // inferred from sequence or structural similarity /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005637 // nuclear inner membrane // non-traceable author statement /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from direct assay /// 0005819 // spindle // inferred from direct assay /// 0031618 // nuclear centromeric heterochromatin // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 1990226 // histone methyltransferase binding // inferred from physical interaction 59.00 258.55 2.02 0.08 0.13 -4.55
209228_x_at 209228_x_at U42349 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U42349.1 /DEF=Human N33 mRNA, complete cds. /FEA=mRNA /GEN=N33 /DB_XREF=gi:1353672 /UG=Hs.71119 Putative prostate cancer tumor suppressor /FL=gb:U42349.1 gb:NM_006765.1 U42349 tumor suppressor candidate 3 TUSC3 7991 NM_006765 /// NM_178234 /// XM_005273646 /// XM_005273647 /// XM_005273648 0006487 // protein N-linked glycosylation // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015693 // magnesium ion transport // inferred from genetic interaction /// 0015693 // magnesium ion transport // inferred from mutant phenotype /// 0018279 // protein N-linked glycosylation via asparagine // inferred from sequence or structural similarity /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0050890 // cognition // inferred from mutant phenotype 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0008250 // oligosaccharyltransferase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from sequence or structural similarity /// 0015095 // magnesium ion transmembrane transporter activity // inferred from mutant phenotype 30.98 128.54 2.02 0.08 0.13 -4.55
203133_at 203133_at NM_006808 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006808.1 /DEF=Homo sapiens protein translocation complex beta (SEC61B), mRNA. /FEA=mRNA /GEN=SEC61B /PROD=protein translocation complex beta /DB_XREF=gi:5803164 /UG=Hs.77028 protein translocation complex beta /FL=gb:BC001734.1 gb:L25085.1 gb:NM_006808.1 NM_006808 Sec61 beta subunit SEC61B 10952 NM_006808 0000060 // protein import into nucleus, translocation // inferred from mutant phenotype /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006412 // translation // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0030970 // retrograde protein transport, ER to cytosol // inferred from mutant phenotype /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // non-traceable author statement /// 0031205 // endoplasmic reticulum Sec complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048408 // epidermal growth factor binding // inferred from physical interaction 173.38 763.91 2.02 0.08 0.13 -4.55
200984_s_at 200984_s_at X16447 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X16447.1 /DEF=Human mRNA for CD59, an LY-6-like protein regulating complement membrane attack. /FEA=mRNA /PROD=precursor polypeptide (AA -25 to 103) /DB_XREF=gi:29805 /UG=Hs.119663 CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344) /FL=gb:NM_000611.1 gb:M34671.1 X16447 CD59 molecule, complement regulatory protein CD59 966 NM_000611 /// NM_001127223 /// NM_001127225 /// NM_001127226 /// NM_001127227 /// NM_203329 /// NM_203330 /// NM_203331 0001775 // cell activation // not recorded /// 0001971 // negative regulation of activation of membrane attack complex // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030449 // regulation of complement activation // traceable author statement /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0031362 // anchored component of external side of plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043218 // compact myelin // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001848 // complement binding // not recorded /// 0005515 // protein binding // inferred from physical interaction 146.73 1576.84 2.02 0.08 0.13 -4.55
200610_s_at 200610_s_at NM_005381 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005381.1 /DEF=Homo sapiens nucleolin (NCL), mRNA. /FEA=mRNA /GEN=NCL /PROD=nucleolin /DB_XREF=gi:4885510 /UG=Hs.79110 nucleolin /FL=gb:NM_005381.1 NM_005381 nucleolin NCL 4691 NM_005381 0001525 // angiogenesis // inferred from direct assay /// 1901838 // positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0042162 // telomeric DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 220.60 1270.12 2.01 0.08 0.13 -4.55
217849_s_at 217849_s_at NM_006035 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006035.1 /DEF=Homo sapiens CDC42-binding protein kinase beta (DMPK-like) (CDC42BPB), mRNA. /FEA=mRNA /GEN=CDC42BPB /PROD=CDC42-binding protein kinase beta (DMPK-like) /DB_XREF=gi:5174412 /UG=Hs.12908 CDC42-binding protein kinase beta (DMPK-like) /FL=gb:AF128625.1 gb:NM_006035.1 NM_006035 CDC42 binding protein kinase beta (DMPK-like) CDC42BPB 9578 NM_006035 /// XM_005268227 /// XM_005268228 /// XM_005268229 /// XM_005268230 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0007010 // cytoskeleton organization // traceable author statement /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007588 // excretion // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0009235 // cobalamin metabolic process // traceable author statement /// 0015889 // cobalamin transport // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0031032 // actomyosin structure organization // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0043001 // Golgi to plasma membrane protein transport // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0042641 // actomyosin // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 58.90 140.95 2.01 0.08 0.13 -4.55
208904_s_at 208904_s_at BC000354 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000354.1 /DEF=Homo sapiens, ribosomal protein S28, clone MGC:8658, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein S28 /DB_XREF=gi:12653172 /UG=Hs.153177 ribosomal protein S28 /FL=gb:BC000354.1 BC000354 ribosomal protein S28 RPS28 6234 NM_001031 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042274 // ribosomal small subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -374.18 3334.11 -2.01 0.08 0.13 -4.55
211938_at 211938_at BF247371 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF247371 /FEA=EST /DB_XREF=gi:11162727 /DB_XREF=est:601858130F1 /CLONE=IMAGE:4068630 /UG=Hs.283330 hypothetical protein PRO1843 BF247371 eukaryotic translation initiation factor 4B EIF4B 1975 NM_001417 /// NM_018507 /// XM_005268709 /// XM_006719274 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016281 // eukaryotic translation initiation factor 4F complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -151.80 613.77 -2.01 0.08 0.13 -4.55
37012_at 37012_at U03271 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U03271:Human F-actin capping protein beta subunit mRNA, complete cds /cds=(0,818) /gb=U03271 /gi=595256 /ug=Hs.76368 /len=1077 U03271 capping protein (actin filament) muscle Z-line, beta CAPZB 832 NM_001206540 /// NM_001206541 /// NM_001282162 /// NM_004930 /// XM_006710938 0006928 // cellular component movement // traceable author statement /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0048747 // muscle fiber development // inferred from electronic annotation /// 0051016 // barbed-end actin filament capping // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation /// 0090036 // regulation of protein kinase C signaling // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071203 // WASH complex // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation -72.05 715.60 -2.01 0.08 0.13 -4.55
210695_s_at 210695_s_at U13395 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U13395.1 /DEF=Human oxidoreductase (HHCMA56) mRNA, complete cds. /FEA=mRNA /GEN=HHCMA56 /PROD=oxidoreductase /DB_XREF=gi:538131 /UG=Hs.279790 putative oxidoreductase /FL=gb:U13395.1 U13395 WW domain containing oxidoreductase WWOX 51741 NM_001291997 /// NM_016373 /// NM_018560 /// NM_130788 /// NM_130790 /// NM_130791 /// NM_130792 /// NM_130844 /// NR_120435 /// NR_120436 /// XM_006721195 /// XR_243411 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048705 // skeletal system morphogenesis // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // traceable author statement /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from electronic annotation /// 0097191 // extrinsic apoptotic signaling pathway // inferred from electronic annotation /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from sequence or structural similarity /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // non-traceable author statement /// 0016491 // oxidoreductase activity // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0046983 // protein dimerization activity // traceable author statement /// 0048037 // cofactor binding // traceable author statement /// 0050662 // coenzyme binding // traceable author statement -31.78 136.74 -2.01 0.08 0.13 -4.55
211961_s_at 211961_s_at AK000826 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000826.1 /DEF=Homo sapiens cDNA FLJ20819 fis, clone ADSE00511. /FEA=mRNA /DB_XREF=gi:7021139 /UG=Hs.237955 hypothetical protein PRO2706 AK000826 RAB7A, member RAS oncogene family RAB7A 7879 NM_004637 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0006622 // protein targeting to lysosome // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007174 // epidermal growth factor catabolic process // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // inferred from mutant phenotype /// 0015031 // protein transport // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0045022 // early endosome to late endosome transport // inferred from mutant phenotype /// 0045453 // bone resorption // inferred from electronic annotation /// 0090382 // phagosome maturation // traceable author statement /// 0090383 // phagosome acidification // inferred from mutant phenotype /// 0090385 // phagosome-lysosome fusion // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // traceable author statement /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097208 // alveolar lamellar body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay /// 0048365 // Rac GTPase binding // inferred from electronic annotation 27.28 314.24 2.01 0.08 0.13 -4.55
203394_s_at 203394_s_at BE973687 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE973687 /FEA=EST /DB_XREF=gi:10587023 /DB_XREF=est:601680868F1 /CLONE=IMAGE:3951041 /UG=Hs.250666 hairy (Drosophila)-homolog /FL=gb:AF264785.1 gb:NM_005524.2 BE973687 hes family bHLH transcription factor 1 HES1 3280 NM_005524 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003143 // embryonic heart tube morphogenesis // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003266 // regulation of secondary heart field cardioblast proliferation // inferred from sequence or structural similarity /// 0003281 // ventricular septum development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // traceable author statement /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007262 // STAT protein import into nucleus // inferred from sequence or structural similarity /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0016477 // cell migration // inferred from electronic annotation /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021555 // midbrain-hindbrain boundary morphogenesis // inferred from electronic annotation /// 0021557 // oculomotor nerve development // inferred from electronic annotation /// 0021558 // trochlear nerve development // inferred from electronic annotation /// 0021575 // hindbrain morphogenesis // inferred from electronic annotation /// 0021861 // forebrain radial glial cell differentiation // inferred from sequence or structural similarity /// 0021915 // neural tube development // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0031016 // pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // traceable author statement /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035909 // aorta morphogenesis // inferred from electronic annotation /// 0035910 // ascending aorta morphogenesis // inferred from sequence or structural similarity /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from sequence or structural similarity /// 0042668 // auditory receptor cell fate determination // inferred from electronic annotation /// 0043388 // positive regulation of DNA binding // inferred from sequence or structural similarity /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045598 // regulation of fat cell differentiation // inferred from electronic annotation /// 0045608 // negative regulation of auditory receptor cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045977 // positive regulation of mitotic cell cycle, embryonic // inferred from sequence or structural similarity /// 0046331 // lateral inhibition // inferred from electronic annotation /// 0046427 // positive regulation of JAK-STAT cascade // inferred from sequence or structural similarity /// 0048469 // cell maturation // inferred from electronic annotation /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048538 // thymus development // inferred from sequence or structural similarity /// 0048667 // cell morphogenesis involved in neuron differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from sequence or structural similarity /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // inferred from sequence or structural similarity /// 0060164 // regulation of timing of neuron differentiation // inferred from electronic annotation /// 0060253 // negative regulation of glial cell proliferation // inferred from sequence or structural similarity /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060675 // ureteric bud morphogenesis // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0061009 // common bile duct development // inferred from electronic annotation /// 0061106 // negative regulation of stomach neuroendocrine cell differentiation // inferred from electronic annotation /// 0061309 // cardiac neural crest cell development involved in outflow tract morphogenesis // inferred from sequence or structural similarity /// 0061626 // pharyngeal arch artery morphogenesis // inferred from sequence or structural similarity /// 0072012 // glomerulus vasculature development // inferred from electronic annotation /// 0072049 // comma-shaped body morphogenesis // inferred from electronic annotation /// 0072050 // S-shaped body morphogenesis // inferred from electronic annotation /// 0072141 // renal interstitial cell development // inferred from electronic annotation /// 0072282 // metanephric nephron tubule morphogenesis // inferred from electronic annotation /// 0090102 // cochlea development // inferred from electronic annotation /// 0097084 // vascular smooth muscle cell development // inferred from sequence or structural similarity /// 0097150 // neuronal stem cell maintenance // inferred from expression pattern /// 2000227 // negative regulation of pancreatic A cell differentiation // inferred from electronic annotation /// 2000737 // negative regulation of stem cell differentiation // inferred from mutant phenotype /// 2000974 // negative regulation of pro-B cell differentiation // inferred from mutant phenotype /// 2000978 // negative regulation of forebrain neuron differentiation // inferred from sequence or structural similarity /// 2000981 // negative regulation of inner ear receptor cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from sequence or structural similarity /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // non-traceable author statement /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0071820 // N-box binding // inferred from sequence or structural similarity -85.30 228.55 -2.01 0.08 0.13 -4.55
204967_at 204967_at NM_001649 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001649.1 /DEF=Homo sapiens apical protein, Xenopus laevis-like (APXL), mRNA. /FEA=mRNA /GEN=APXL /PROD=apical protein, Xenopus laevis-like /DB_XREF=gi:4502174 /UG=Hs.2391 apical protein, Xenopus laevis-like /FL=gb:NM_001649.1 NM_001649 shroom family member 2 SHROOM2 357 NM_001649 /// XM_005274500 0000902 // cell morphogenesis // inferred from direct assay /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0002089 // lens morphogenesis in camera-type eye // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // inferred from sequence or structural similarity /// 0008057 // eye pigment granule organization // inferred from sequence or structural similarity /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0030835 // negative regulation of actin filament depolymerization // inferred from electronic annotation /// 0032401 // establishment of melanosome localization // inferred from sequence or structural similarity /// 0032438 // melanosome organization // inferred from sequence or structural similarity /// 0035725 // sodium ion transmembrane transport // traceable author statement /// 0043010 // camera-type eye development // inferred from sequence or structural similarity /// 0043482 // cellular pigment accumulation // inferred from sequence or structural similarity /// 0043583 // ear development // inferred from sequence or structural similarity /// 0045176 // apical protein localization // inferred from sequence or structural similarity /// 0045217 // cell-cell junction maintenance // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from sequence or structural similarity /// 0051017 // actin filament bundle assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0030864 // cortical actin cytoskeleton // inferred from sequence or structural similarity /// 0031941 // filamentous actin // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043296 // apical junction complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from sequence or structural similarity /// 0015280 // ligand-gated sodium channel activity // traceable author statement /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from sequence or structural similarity -24.40 97.20 -2.01 0.08 0.13 -4.55
36907_at 36907_at M88468 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. M88468:Homo sapiens mevalonate kinase mRNA, complete cds /cds=(91,1281) /gb=M88468 /gi=307197 /ug=Hs.75138 /len=1967 M88468 mevalonate kinase MVK 4598 NM_000431 /// NM_001114185 /// XM_005253883 /// XM_005253884 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from direct assay /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019287 // isopentenyl diphosphate biosynthetic process, mevalonate pathway // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004496 // mevalonate kinase activity // inferred from direct assay /// 0004496 // mevalonate kinase activity // inferred from mutant phenotype /// 0004496 // mevalonate kinase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 40.68 213.54 2.01 0.08 0.13 -4.55
202954_at 202954_at NM_007019 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007019.1 /DEF=Homo sapiens ubiquitin carrier protein E2-C (UBCH10), mRNA. /FEA=mRNA /GEN=UBCH10 /PROD=ubiquitin carrier protein E2-C /DB_XREF=gi:5902145 /UG=Hs.93002 ubiquitin carrier protein E2-C /FL=gb:U73379.1 gb:NM_007019.1 NM_007019 ubiquitin-conjugating enzyme E2C UBE2C 11065 NM_001281741 /// NM_001281742 /// NM_007019 /// NM_181799 /// NM_181800 /// NM_181801 /// NM_181802 /// NM_181803 /// NR_104036 /// NR_104037 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0007049 // cell cycle // non-traceable author statement /// 0007051 // spindle organization // non-traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0008054 // cyclin catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010458 // exit from mitosis // inferred from mutant phenotype /// 0010994 // free ubiquitin chain polymerization // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031536 // positive regulation of exit from mitosis // inferred from mutant phenotype /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051488 // activation of anaphase-promoting complex activity // traceable author statement /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -36.53 269.04 -2.01 0.08 0.13 -4.55
201413_at 201413_at NM_000414 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000414.1 /DEF=Homo sapiens hydroxysteroid (17-beta) dehydrogenase 4 (HSD17B4), mRNA. /FEA=mRNA /GEN=HSD17B4 /PROD=hydroxysteroid (17-beta) dehydrogenase 4 /DB_XREF=gi:4504504 /UG=Hs.75441 hydroxysteroid (17-beta) dehydrogenase 4 /FL=gb:BC003098.1 gb:NM_000414.1 NM_000414 hydroxysteroid (17-beta) dehydrogenase 4 HSD17B4 3295 NM_000414 /// NM_001199291 /// NM_001199292 /// NM_001292027 /// NM_001292028 0000038 // very long-chain fatty acid metabolic process // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0006699 // bile acid biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from direct assay /// 0008206 // bile acid metabolic process // traceable author statement /// 0008209 // androgen metabolic process // inferred from direct assay /// 0008210 // estrogen metabolic process // inferred from direct assay /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // traceable author statement /// 0033559 // unsaturated fatty acid metabolic process // traceable author statement /// 0036109 // alpha-linolenic acid metabolic process // traceable author statement /// 0036111 // very long-chain fatty-acyl-CoA metabolic process // inferred from direct assay /// 0036112 // medium-chain fatty-acyl-CoA metabolic process // inferred from direct assay /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from mutant phenotype /// 0060009 // Sertoli cell development // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // non-traceable author statement /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from mutant phenotype /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // traceable author statement /// 0005102 // receptor binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016508 // long-chain-enoyl-CoA hydratase activity // inferred from direct assay /// 0016508 // long-chain-enoyl-CoA hydratase activity // traceable author statement /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation /// 0033989 // 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity // traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044594 // 17-beta-hydroxysteroid dehydrogenase (NAD+) activity // inferred from direct assay 30.50 120.45 2.01 0.08 0.13 -4.55
208270_s_at 208270_s_at NM_020216 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020216.2 /DEF=Homo sapiens arginyl aminopeptidase (aminopeptidase B) (RNPEP), mRNA. /FEA=mRNA /GEN=RNPEP /PROD=arginyl aminopeptidase (aminopeptidase B) /DB_XREF=gi:13443030 /UG=Hs.283667 arginyl aminopeptidase (aminopeptidase B) /FL=gb:NM_020216.2 NM_020216 arginyl aminopeptidase (aminopeptidase B) RNPEP 6051 NM_020216 /// XM_005245418 /// XM_005245419 /// XM_005245420 /// XM_005245421 0000209 // protein polyubiquitination // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0006282 // regulation of DNA repair // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006508 // proteolysis // inferred by curator /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0030154 // cell differentiation // non-traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0031371 // ubiquitin conjugating enzyme complex // inferred from direct assay /// 0035370 // UBC13-UEV1A complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase activity // non-traceable author statement /// 0004301 // epoxide hydrolase activity // non-traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // non-traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -46.55 313.62 -2.01 0.08 0.13 -4.55
218622_at 218622_at NM_024057 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024057.1 /DEF=Homo sapiens hypothetical protein MGC5585 (MGC5585), mRNA. /FEA=mRNA /GEN=MGC5585 /PROD=hypothetical protein MGC5585 /DB_XREF=gi:13129027 /UG=Hs.5152 hypothetical protein MGC5585 /FL=gb:BC000861.1 gb:NM_024057.1 NM_024057 nucleoporin 37kDa NUP37 79023 NM_024057 /// XM_005269144 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031080 // nuclear pore outer ring // inferred from direct assay /// 0031080 // nuclear pore outer ring // non-traceable author statement 0005515 // protein binding // inferred from physical interaction 23.35 151.38 2.00 0.08 0.13 -4.55
215438_x_at 215438_x_at BE906054 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE906054 /FEA=EST /DB_XREF=gi:10399395 /DB_XREF=est:601497073F1 /CLONE=IMAGE:3899034 /UG=Hs.2707 G1 to S phase transition 1 BE906054 G1 to S phase transition 1 GSPT1 2935 NM_001130006 /// NM_001130007 /// NM_002094 /// XM_005255274 /// XM_005255275 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006415 // translational termination // inferred from mutant phenotype /// 0006479 // protein methylation // inferred from direct assay 0005622 // intracellular // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003747 // translation release factor activity // inferred from mutant phenotype /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -64.73 393.46 -2.00 0.08 0.13 -4.55
201383_s_at 201383_s_at AL044170 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL044170 /FEA=EST /DB_XREF=gi:5935951 /DB_XREF=est:DKFZp434P2128_s1 /CLONE=DKFZp434P2128 /UG=Hs.277721 membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125) /FL=gb:D30756.1 gb:NM_005899.1 AL044170 neighbor of BRCA1 gene 1 NBR1 4077 NM_001291571 /// NM_001291572 /// NM_005899 /// NM_031858 /// NM_031862 /// XM_006721903 0016236 // macroautophagy // inferred from direct assay /// 0030500 // regulation of bone mineralization // inferred from sequence or structural similarity /// 0032872 // regulation of stress-activated MAPK cascade // inferred from sequence or structural similarity /// 0045668 // negative regulation of osteoblast differentiation // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // inferred from direct assay 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005776 // autophagic vacuole // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from sequence or structural similarity -44.10 108.65 -2.00 0.08 0.13 -4.55
213720_s_at 213720_s_at AI831675 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI831675 /FEA=EST /DB_XREF=gi:5452346 /DB_XREF=est:wj50g03.x1 /CLONE=IMAGE:2406292 /UG=Hs.78202 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 AI831675 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 SMARCA4 6597 NM_001128844 /// NM_001128845 /// NM_001128846 /// NM_001128847 /// NM_001128848 /// NM_001128849 /// NM_003072 /// XM_005260028 /// XM_005260030 /// XM_005260031 /// XM_005260032 /// XM_005260033 /// XM_005260034 /// XM_005260035 /// XM_006722845 /// XM_006722846 /// XM_006722847 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003407 // neural retina development // inferred from expression pattern /// 0006200 // ATP catabolic process // inferred from genetic interaction /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred by curator /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007070 // negative regulation of transcription from RNA polymerase II promoter during mitosis // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035887 // aortic smooth muscle cell differentiation // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0002039 // p53 binding // inferred from physical interaction /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from genetic interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042393 // histone binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay 63.65 248.60 2.00 0.08 0.13 -4.55
218216_x_at 218216_x_at NM_016638 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016638.1 /DEF=Homo sapiens SRp25 nuclear protein (LOC51329), mRNA. /FEA=mRNA /GEN=LOC51329 /PROD=SRp25 nuclear protein /DB_XREF=gi:7706183 /UG=Hs.103561 SRp25 nuclear protein /FL=gb:BC001958.1 gb:AB035384.1 gb:NM_016638.1 NM_016638 ADP-ribosylation factor-like 6 interacting protein 4 ARL6IP4 51329 NM_001002251 /// NM_001002252 /// NM_001278378 /// NM_001278379 /// NM_001278380 /// NM_016638 /// NM_018694 /// NR_103512 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 57.27 226.34 2.00 0.08 0.13 -4.55
208328_s_at 208328_s_at NM_005587 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005587.1 /DEF=Homo sapiens MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A) (MEF2A), mRNA. /FEA=mRNA /GEN=MEF2A /PROD=MADS box transcription enhancer factor 2,polypeptide A (myocyte enhancer factor 2A) /DB_XREF=gi:5031906 /UG=Hs.182280 MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A) /FL=gb:NM_005587.1 NM_005587 myocyte enhancer factor 2A MEF2A 4205 NM_001130926 /// NM_001130927 /// NM_001130928 /// NM_001171894 /// NM_005587 /// XM_005254914 /// XM_005254915 /// XM_005254916 /// XM_006720509 /// XM_006720510 /// XM_006720511 /// XM_006720512 /// XM_006720513 /// XM_006720514 /// XM_006720515 /// XM_006720516 /// XM_006720517 /// XM_006720518 /// XM_006720519 /// XM_006720520 /// XM_006720521 0000002 // mitochondrial genome maintenance // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000165 // MAPK cascade // inferred from direct assay /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002467 // germinal center formation // inferred from electronic annotation /// 0002634 // regulation of germinal center formation // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0003138 // primary heart field specification // inferred from electronic annotation /// 0003139 // secondary heart field specification // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003185 // sinoatrial valve morphogenesis // inferred from electronic annotation /// 0003211 // cardiac ventricle formation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006959 // humoral immune response // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0007517 // muscle organ development // non-traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007521 // muscle cell fate determination // inferred from electronic annotation /// 0007611 // learning or memory // inferred from electronic annotation /// 0010613 // positive regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010694 // positive regulation of alkaline phosphatase activity // inferred from electronic annotation /// 0014033 // neural crest cell differentiation // inferred from electronic annotation /// 0014898 // cardiac muscle hypertrophy in response to stress // inferred from electronic annotation /// 0021542 // dentate gyrus development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030220 // platelet formation // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035051 // cardiocyte differentiation // inferred from electronic annotation /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0035984 // cellular response to trichostatin A // inferred from electronic annotation /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042100 // B cell proliferation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045652 // regulation of megakaryocyte differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048311 // mitochondrion distribution // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from sequence or structural similarity /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0055005 // ventricular cardiac myofibril assembly // inferred from sequence or structural similarity /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060025 // regulation of synaptic activity // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060297 // regulation of sarcomere organization // inferred from electronic annotation /// 0060536 // cartilage morphogenesis // inferred from electronic annotation /// 0061333 // renal tubule morphogenesis // inferred from electronic annotation /// 0061337 // cardiac conduction // inferred from sequence or structural similarity /// 0070375 // ERK5 cascade // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from direct assay /// 0071300 // cellular response to retinoic acid // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071498 // cellular response to fluid shear stress // inferred from electronic annotation /// 0071864 // positive regulation of cell proliferation in bone marrow // inferred from electronic annotation /// 0072102 // glomerulus morphogenesis // inferred from electronic annotation /// 0072160 // nephron tubule epithelial cell differentiation // inferred from electronic annotation /// 0090073 // positive regulation of protein homodimerization activity // inferred from electronic annotation /// 2000111 // positive regulation of macrophage apoptotic process // inferred from electronic annotation /// 2000727 // positive regulation of cardiac muscle cell differentiation // inferred from electronic annotation /// 2000987 // positive regulation of behavioral fear response // inferred from electronic annotation /// 2001013 // epithelial cell proliferation involved in renal tubule morphogenesis // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030017 // sarcomere // inferred from electronic annotation 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from direct assay /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0000987 // core promoter proximal region sequence-specific DNA binding // inferred from electronic annotation /// 0001046 // core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0033613 // activating transcription factor binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0071837 // HMG box domain binding // inferred from electronic annotation -24.82 45.76 -2.00 0.08 0.13 -4.55
200869_at 200869_at NM_000980 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000980.1 /DEF=Homo sapiens ribosomal protein L18a (RPL18A), mRNA. /FEA=mRNA /GEN=RPL18A /PROD=ribosomal protein L18a /DB_XREF=gi:11415025 /UG=Hs.163593 ribosomal protein L18a /FL=gb:NM_000980.1 gb:L05093.1 NM_000980 ribosomal protein L18a /// small nucleolar RNA, H/ACA box 68 RPL18A /// SNORA68 6142 /// 26780 NM_000980 /// NR_000012 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -541.80 2881.68 -2.00 0.08 0.13 -4.55
217812_at 217812_at NM_016258 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016258.1 /DEF=Homo sapiens high-glucose-regulated protein 8 (HGRG8), mRNA. /FEA=mRNA /GEN=HGRG8 /PROD=high-glucose-regulated protein 8 /DB_XREF=gi:7705410 /UG=Hs.20993 high-glucose-regulated protein 8 /FL=gb:BC002559.1 gb:AF155095.1 gb:AF192968.1 gb:NM_016258.1 NM_016258 YTH domain family, member 2 YTHDF2 51441 NM_001172828 /// NM_001173128 /// NM_016258 0006959 // humoral immune response // traceable author statement /// 0043488 // regulation of mRNA stability // inferred from mutant phenotype 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 1990247 // N6-methyladenosine-containing RNA binding // inferred from direct assay 100.25 407.97 2.00 0.08 0.13 -4.55
201790_s_at 201790_s_at AW150953 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW150953 /FEA=EST /DB_XREF=gi:6198851 /DB_XREF=est:xg42f09.x1 /CLONE=IMAGE:2630249 /UG=Hs.11806 7-dehydrocholesterol reductase /FL=gb:BC000054.1 gb:AF034544.1 gb:AF067127.1 gb:AF096305.1 gb:NM_001360.1 AW150953 7-dehydrocholesterol reductase DHCR7 1717 NM_001163817 /// NM_001360 0001568 // blood vessel development // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005640 // nuclear outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0047598 // 7-dehydrocholesterol reductase activity // inferred from direct assay 38.25 122.03 2.00 0.08 0.13 -4.55
206989_s_at 206989_s_at NM_004719 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004719.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 2, interacting protein (SFRS2IP), mRNA. /FEA=mRNA /GEN=SFRS2IP /PROD=splicing factor, arginineserine-rich 2,interacting protein /DB_XREF=gi:4759171 /UG=Hs.51957 splicing factor, arginineserine-rich 2, interacting protein /FL=gb:NM_004719.1 NM_004719 SR-related CTD-associated factor 11 SCAF11 9169 NM_004719 /// XM_005269230 /// XM_006719692 0000245 // spliceosomal complex assembly // inferred from direct assay /// 0000375 // RNA splicing, via transesterification reactions // inferred from direct assay /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 38.68 178.16 2.00 0.08 0.13 -4.55
213407_at 213407_at AB023148 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB023148.1 /DEF=Homo sapiens mRNA for KIAA0931 protein, partial cds. /FEA=mRNA /GEN=KIAA0931 /PROD=KIAA0931 protein /DB_XREF=gi:4589505 /UG=Hs.173373 KIAA0931 protein AB023148 PH domain and leucine rich repeat protein phosphatase 2 PHLPP2 23035 NM_001289003 /// NM_015020 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042622 // photoreceptor outer segment membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 29.43 103.69 2.00 0.08 0.13 -4.55
201498_at 201498_at AI160440 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI160440 /FEA=EST /DB_XREF=gi:3693820 /DB_XREF=est:qc08f12.x1 /CLONE=IMAGE:1709039 /UG=Hs.78683 ubiquitin specific protease 7 (herpes virus-associated) /FL=gb:NM_003470.1 AI160440 ubiquitin specific peptidase 7 (herpes virus-associated) USP7 7874 NM_001286457 /// NM_001286458 /// NM_003470 0006281 // DNA repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010216 // maintenance of DNA methylation // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation 0002039 // p53 binding // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // inferred from mutant phenotype /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation 29.55 115.05 1.99 0.08 0.13 -4.55
208742_s_at 208742_s_at U78303 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U78303.1 /DEF=Human 2HOR0202 mRNA, complete cds. /FEA=mRNA /PROD=2HOR0202 /DB_XREF=gi:6648546 /UG=Hs.23964 sin3-associated polypeptide, 18kD /FL=gb:NM_005870.2 gb:U96915.1 gb:AF153608.1 gb:U78303.1 U78303 Sin3A-associated protein, 18kDa SAP18 10284 NM_005870 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay 0000118 // histone deacetylase complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0061574 // ASAP complex // inferred from direct assay 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -28.53 517.54 -1.99 0.08 0.13 -4.55
211205_x_at 211205_x_at U78577 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U78577.1 /DEF=Human 68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha mRNA, clone PIP5KIa3, complete cds. /FEA=mRNA /PROD=68 kDa type I phosphatidylinositol-4-phosphate5-kinase alpha /DB_XREF=gi:1743874 /UG=Hs.149255 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha /FL=gb:U78577.1 U78577 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha PIP5K1A 8394 NM_001135636 /// NM_001135637 /// NM_001135638 /// NM_003557 /// XM_005245525 /// XM_005245526 /// XM_005245527 /// XM_005245528 /// XM_005245529 /// XM_005245530 /// XM_005245531 /// XM_005245532 /// XM_006711563 /// XM_006711564 /// XM_006711565 /// XM_006711566 /// XM_006711567 /// XM_006711568 0006644 // phospholipid metabolic process // traceable author statement /// 0006650 // glycerophospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006909 // phagocytosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from direct assay /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // non-traceable author statement /// 0016477 // cell migration // non-traceable author statement /// 0030216 // keratinocyte differentiation // traceable author statement /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0032863 // activation of Rac GTPase activity // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation /// 0046854 // phosphatidylinositol phosphorylation // inferred from direct assay /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0046854 // phosphatidylinositol phosphorylation // traceable author statement /// 0048041 // focal adhesion assembly // inferred from mutant phenotype /// 0060326 // cell chemotaxis // inferred from mutant phenotype /// 0072661 // protein targeting to plasma membrane // inferred from mutant phenotype /// 0097178 // ruffle assembly // inferred from mutant phenotype 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0016607 // nuclear speck // traceable author statement /// 0030027 // lamellipodium // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // inferred from direct assay /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from direct assay -41.60 60.93 -1.99 0.08 0.13 -4.55
208816_x_at 208816_x_at M62898 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M62898.1 /DEF=Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region. /FEA=mRNA /DB_XREF=gi:187147 /UG=Hs.217493 annexin A2 /FL=gb:M62898.1 M62898 annexin A2 pseudogene 2 ANXA2P2 304 NR_003573 0043086 // negative regulation of catalytic activity // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation -158.62 1284.36 -1.99 0.08 0.13 -4.55
40189_at 40189_at M93651 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. M93651:Human set gene, complete cds /cds=(3,836) /gb=M93651 /gi=338038 /ug=Hs.145279 /len=2562 M93651 SET nuclear proto-oncogene /// SET-like protein SET /// SETSIP 6418 /// 646817 NM_001122821 /// NM_001248000 /// NM_001248001 /// NM_001287737 /// NM_003011 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006337 // nucleosome disassembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035067 // negative regulation of histone acetylation // traceable author statement /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0045446 // endothelial cell differentiation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0004864 // protein phosphatase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0042393 // histone binding // traceable author statement 117.60 526.60 1.99 0.08 0.13 -4.55
200053_at 200053_at NM_004890 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004890.1 /DEF=Homo sapiens sperm associated antigen 7 (SPAG7), mRNA. /FEA=mRNA /GEN=SPAG7 /PROD=sperm associated antigen 7 /DB_XREF=gi:4757715 /UG=Hs.90436 sperm associated antigen 7 /FL=gb:AF047437.1 gb:NM_004890.1 NM_004890 sperm associated antigen 7 SPAG7 9552 NM_004890 /// XM_005256865 /// XM_006721600 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation -84.93 291.41 -1.99 0.08 0.13 -4.55
212581_x_at 212581_x_at BE561479 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE561479 /FEA=EST /DB_XREF=gi:9805199 /DB_XREF=est:601346543F1 /CLONE=IMAGE:3679498 /UG=Hs.169476 glyceraldehyde-3-phosphate dehydrogenase BE561479 glyceraldehyde-3-phosphate dehydrogenase GAPDH 2597 NM_001256799 /// NM_001289745 /// NM_001289746 /// NM_002046 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0035606 // peptidyl-cysteine S-trans-nitrosylation // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0051402 // neuron apoptotic process // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097452 // GAIT complex // inferred from direct assay 0004365 // glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity // inferred from sequence or structural similarity /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035605 // peptidyl-cysteine S-nitrosylase activity // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from physical interaction /// 0050661 // NADP binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation -1328.82 4907.89 -1.99 0.08 0.13 -4.55
211750_x_at 211750_x_at BC005946 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005946.1 /DEF=Homo sapiens, clone MGC:14580, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:14580) /DB_XREF=gi:13543588 /FL=gb:BC005946.1 BC005946 tubulin, alpha 1c TUBA1C 84790 NM_032704 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 544.78 3322.56 1.99 0.09 0.13 -4.55
204682_at 204682_at NM_000428 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000428.1 /DEF=Homo sapiens latent transforming growth factor beta binding protein 2 (LTBP2), mRNA. /FEA=mRNA /GEN=LTBP2 /PROD=latent transforming growth factor beta bindingprotein 2 /DB_XREF=gi:4557732 /UG=Hs.83337 latent transforming growth factor beta binding protein 2 /FL=gb:NM_000428.1 NM_000428 latent transforming growth factor beta binding protein 2 LTBP2 4053 NM_000428 0006605 // protein targeting // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0009306 // protein secretion // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation -128.67 1067.39 -1.99 0.09 0.13 -4.55
211378_x_at 211378_x_at BC001224 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001224.1 /DEF=Homo sapiens, clone MGC:982, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:982) /DB_XREF=gi:12654762 /UG=Hs.267690 KIAA1228 protein /FL=gb:BC001224.1 BC001224 peptidyl-prolyl cis-trans isomerase A-like /// peptidylprolyl isomerase A (cyclophilin A) LOC101060363 /// PPIA 5478 /// 101060363 NM_021130 /// NM_203430 /// NM_203431 /// XM_003960117 /// XM_005246048 /// XM_005249791 /// XM_005275876 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0006278 // RNA-dependent DNA replication // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019061 // uncoating of virus // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019076 // viral release from host cell // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030260 // entry into host cell // traceable author statement /// 0034389 // lipid particle organization // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // traceable author statement /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0075713 // establishment of integrated proviral latency // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046790 // virion binding // non-traceable author statement /// 0051082 // unfolded protein binding // traceable author statement -1157.90 4957.18 -1.99 0.09 0.13 -4.55
208655_at 208655_at BG530368 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG530368 /FEA=EST /DB_XREF=gi:13521905 /DB_XREF=est:602559112F1 /CLONE=IMAGE:4697115 /UG=Hs.79933 cyclin I /FL=gb:D50310.1 gb:BC000420.1 gb:BC004975.1 gb:NM_006835.1 gb:AF135162.1 BG530368 cyclin I CCNI 10983 NM_006835 0007283 // spermatogenesis // non-traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation -124.43 920.36 -1.99 0.09 0.13 -4.55
204252_at 204252_at M68520 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M68520.1 /DEF=Human cdc2-related protein kinase mRNA, complete cds. /FEA=mRNA /PROD=cdc2-related protein kinase /DB_XREF=gi:180177 /UG=Hs.19192 cyclin-dependent kinase 2 /FL=gb:BC003065.1 gb:M68520.1 gb:NM_001798.1 M68520 cyclin-dependent kinase 2 CDK2 1017 NM_001290230 /// NM_001798 /// NM_052827 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000085 // mitotic G2 phase // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // non-traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007126 // meiotic nuclear division // traceable author statement /// 0007265 // Ras protein signal transduction // inferred from expression pattern /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016572 // histone phosphorylation // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031571 // mitotic G1 DNA damage checkpoint // traceable author statement /// 0032298 // positive regulation of DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0051298 // centrosome duplication // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060968 // regulation of gene silencing // inferred from direct assay /// 0071732 // cellular response to nitric oxide // traceable author statement 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from direct assay /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000805 // X chromosome // inferred from electronic annotation /// 0000806 // Y chromosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005813 // centrosome // traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015030 // Cajal body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from direct assay /// 0035173 // histone kinase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 34.82 137.11 1.98 0.09 0.13 -4.55
220008_at 220008_at NM_024776 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024776.1 /DEF=Homo sapiens hypothetical protein FLJ21140 (FLJ21140), mRNA. /FEA=mRNA /GEN=FLJ21140 /PROD=hypothetical protein FLJ21140 /DB_XREF=gi:13376128 /UG=Hs.143895 hypothetical protein FLJ21140 /FL=gb:NM_024776.1 NM_024776 pseudopodium-enriched atypical kinase 1 PEAK1 79834 NM_024776 /// XM_005254670 /// XM_005254671 /// XM_005254672 /// XM_005254673 /// XM_005254674 /// XM_005254675 /// XM_006720691 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -29.97 30.79 -1.98 0.09 0.13 -4.55
218331_s_at 218331_s_at NM_017782 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017782.1 /DEF=Homo sapiens hypothetical protein FLJ20360 (FLJ20360), mRNA. /FEA=mRNA /GEN=FLJ20360 /PROD=hypothetical protein FLJ20360 /DB_XREF=gi:8923334 /UG=Hs.26434 hypothetical protein FLJ20360 /FL=gb:BC001759.1 gb:NM_017782.1 NM_017782 family with sequence similarity 208, member B FAM208B 54906 NM_017782 /// XM_005252474 /// XM_005252475 /// XM_005252476 /// XM_005252477 /// XM_005252478 /// XM_005252480 /// XM_005252481 /// XM_005252482 /// XM_005252483 /// XM_006717452 69.65 173.00 1.98 0.09 0.13 -4.55
217803_at 217803_at NM_022130 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022130.1 /DEF=Homo sapiens Golgi protein (GPP34), mRNA. /FEA=mRNA /GEN=GPP34 /PROD=Golgi protein /DB_XREF=gi:11545858 /UG=Hs.18271 Golgi protein /FL=gb:NM_022130.1 NM_022130 golgi phosphoprotein 3 (coat-protein) GOLPH3 64083 NM_022130 0006810 // transport // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0009101 // glycoprotein biosynthetic process // inferred from mutant phenotype /// 0009306 // protein secretion // inferred from mutant phenotype /// 0010467 // gene expression // inferred from mutant phenotype /// 0010821 // regulation of mitochondrion organization // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0030032 // lamellipodium assembly // inferred from mutant phenotype /// 0032008 // positive regulation of TOR signaling // inferred from mutant phenotype /// 0043001 // Golgi to plasma membrane protein transport // inferred from mutant phenotype /// 0045053 // protein retention in Golgi apparatus // inferred from mutant phenotype /// 0048194 // Golgi vesicle budding // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0050901 // leukocyte tethering or rolling // inferred from mutant phenotype /// 0060352 // cell adhesion molecule production // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0031985 // Golgi cisterna // inferred from direct assay /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0070273 // phosphatidylinositol-4-phosphate binding // inferred from direct assay -109.62 447.14 -1.98 0.09 0.13 -4.55
208809_s_at 208809_s_at AL136632 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136632.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564G182 (from clone DKFZp564G182); complete cds. /FEA=mRNA /GEN=DKFZp564G182 /PROD=hypothetical protein /DB_XREF=gi:12052789 /UG=Hs.173685 hypothetical protein FLJ12619 /FL=gb:AL136632.1 AL136632 chromosome 6 open reading frame 62 C6orf62 81688 NM_030939 /// XM_005249433 0005622 // intracellular // inferred from direct assay 51.38 368.84 1.98 0.09 0.13 -4.55
209171_at 209171_at AF219116 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF219116.1 /DEF=Homo sapiens inosine triphosphate pyrophosphatase (ITPA) mRNA, complete cds. /FEA=mRNA /GEN=ITPA /PROD=inosine triphosphate pyrophosphatase /DB_XREF=gi:13398327 /UG=Hs.6817 putative oncogene protein hlc14-06-p /FL=gb:AF063607.1 gb:AF026816.2 gb:NM_025200.1 gb:AF219116.1 AF219116 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) ITPA 3704 NM_001267623 /// NM_033453 /// NM_181493 /// NR_052000 /// NR_052001 /// NR_052002 /// XM_006723564 /// XM_006723565 0006193 // ITP catabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009143 // nucleoside triphosphate catabolic process // inferred from electronic annotation /// 0009204 // deoxyribonucleoside triphosphate catabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051276 // chromosome organization // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035870 // dITP diphosphatase activity // not recorded /// 0036220 // ITP diphosphatase activity // not recorded /// 0036222 // XTP diphosphatase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047429 // nucleoside-triphosphate diphosphatase activity // inferred from electronic annotation -28.68 172.04 -1.98 0.09 0.13 -4.55
218473_s_at 218473_s_at NM_024656 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024656.1 /DEF=Homo sapiens hypothetical protein FLJ22329 (FLJ22329), mRNA. /FEA=mRNA /GEN=FLJ22329 /PROD=hypothetical protein FLJ22329 /DB_XREF=gi:13375904 /UG=Hs.61478 hypothetical protein FLJ22329 /FL=gb:NM_024656.1 NM_024656 collagen beta(1-O)galactosyltransferase 1 COLGALT1 79709 NM_024656 /// XM_005260080 0008152 // metabolic process // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0016020 // membrane // inferred from direct assay 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0050211 // procollagen galactosyltransferase activity // inferred from electronic annotation -158.25 449.05 -1.98 0.09 0.13 -4.55
200949_x_at 200949_x_at NM_001023 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001023.1 /DEF=Homo sapiens ribosomal protein S20 (RPS20), mRNA. /FEA=mRNA /GEN=RPS20 /PROD=ribosomal protein S20 /DB_XREF=gi:4506696 /UG=Hs.8102 ribosomal protein S20 /FL=gb:L06498.1 gb:NM_001023.1 NM_001023 ribosomal protein S20 /// small nucleolar RNA, C/D box 54 RPS20 /// SNORD54 6224 /// 26795 NM_001023 /// NM_001146227 /// NR_002437 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -258.30 2278.75 -1.98 0.09 0.13 -4.55
212050_at 212050_at AK026913 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026913.1 /DEF=Homo sapiens cDNA: FLJ23260 fis, clone COL05804, highly similar to HSU90911 Human clone 23652 mRNA sequence. /FEA=mRNA /DB_XREF=gi:10439884 /UG=Hs.13996 Homo sapiens cDNA: FLJ23260 fis, clone COL05804, highly similar to HSU90911 Human clone 23652 mRNA sequence AK026913 WAS/WASL interacting protein family, member 2 WIPF2 147179 NM_133264 /// XM_005257083 /// XM_005257084 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 24.90 144.07 1.98 0.09 0.13 -4.55
221892_at 221892_at AK024548 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024548.1 /DEF=Homo sapiens cDNA: FLJ20895 fis, clone ADKA03483. /FEA=mRNA /DB_XREF=gi:10436853 /UG=Hs.285737 Homo sapiens cDNA: FLJ20895 fis, clone ADKA03483 AK024548 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) H6PD 9563 NM_001282587 /// NM_004285 /// XM_005263539 /// XM_005263540 /// XM_005263541 /// XM_006711052 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0006739 // NADP metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0097305 // response to alcohol // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017057 // 6-phosphogluconolactonase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0047936 // glucose 1-dehydrogenase [NAD(P)] activity // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation 36.62 49.01 1.98 0.09 0.13 -4.55
200083_at 200083_at AA621731 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA621731 /FEA=EST /DB_XREF=gi:2525670 /DB_XREF=est:af54h05.s1 /CLONE=IMAGE:1035513 /UG=Hs.12064 ubiquitin specific protease 22 AA621731 ubiquitin specific peptidase 22 USP22 23326 NM_015276 /// XM_005256575 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0009790 // embryo development // non-traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from direct assay /// 0016578 // histone deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from direct assay /// 0043967 // histone H4 acetylation // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype 0000124 // SAGA complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0070461 // SAGA-type complex // inferred from direct assay 0003713 // transcription coactivator activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010485 // H4 histone acetyltransferase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from mutant phenotype /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 63.52 462.49 1.98 0.09 0.13 -4.55
201833_at 201833_at NM_001527 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001527.1 /DEF=Homo sapiens histone deacetylase 2 (HDAC2), mRNA. /FEA=mRNA /GEN=HDAC2 /PROD=histone deacetylase 2 /DB_XREF=gi:4557640 /UG=Hs.3352 histone deacetylase 2 /FL=gb:U31814.1 gb:NM_001527.1 NM_001527 histone deacetylase 2 HDAC2 3066 NM_001527 /// NR_033441 /// NR_073443 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006338 // chromatin remodeling // inferred by curator /// 0006344 // maintenance of chromatin silencing // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009913 // epidermal cell differentiation // inferred from sequence or structural similarity /// 0010870 // positive regulation of receptor biosynthetic process // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // inferred from sequence or structural similarity /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // inferred from mutant phenotype /// 0021766 // hippocampus development // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0032967 // positive regulation of collagen biosynthetic process // inferred by curator /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from sequence or structural similarity /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0045347 // negative regulation of MHC class II biosynthetic process // inferred by curator /// 0045786 // negative regulation of cell cycle // traceable author statement /// 0045862 // positive regulation of proteolysis // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred by curator /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred by curator /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0051896 // regulation of protein kinase B signaling // inferred from electronic annotation /// 0055013 // cardiac muscle cell development // inferred from electronic annotation /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060297 // regulation of sarcomere organization // inferred from electronic annotation /// 0060789 // hair follicle placode formation // inferred from sequence or structural similarity /// 0061029 // eyelid development in camera-type eye // inferred from sequence or structural similarity /// 0061198 // fungiform papilla formation // inferred from sequence or structural similarity /// 0070932 // histone H3 deacetylation // inferred from sequence or structural similarity /// 0070933 // histone H4 deacetylation // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from electronic annotation /// 0090311 // regulation of protein deacetylation // inferred from electronic annotation /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005657 // replication fork // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0016580 // Sin3 complex // inferred from direct assay /// 0016581 // NuRD complex // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0035098 // ESC/E(Z) complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001047 // core promoter binding // inferred from electronic annotation /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019213 // deacetylase activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031078 // histone deacetylase activity (H3-K14 specific) // inferred from electronic annotation /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0032041 // NAD-dependent histone deacetylase activity (H3-K14 specific) // inferred from electronic annotation /// 0032129 // histone deacetylase activity (H3-K9 specific) // inferred from electronic annotation /// 0033558 // protein deacetylase activity // inferred from mutant phenotype /// 0034739 // histone deacetylase activity (H4-K16 specific) // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046969 // NAD-dependent histone deacetylase activity (H3-K9 specific) // inferred from electronic annotation /// 0046970 // NAD-dependent histone deacetylase activity (H4-K16 specific) // inferred from electronic annotation /// 0097372 // NAD-dependent histone deacetylase activity (H3-K18 specific) // inferred from electronic annotation 40.65 471.05 1.98 0.09 0.13 -4.55
201573_s_at 201573_s_at M75715 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M75715.1 /DEF=Human TB3-1 mRNA, complete cds. /FEA=mRNA /PROD=TB3-1 /DB_XREF=gi:338686 /UG=Hs.77324 eukaryotic translation termination factor 1 /FL=gb:U90176.1 gb:M75715.1 gb:NM_004730.1 M75715 eukaryotic translation termination factor 1 ETF1 2107 NM_001256302 /// NM_001282185 /// NM_001291974 /// NM_001291975 /// NM_004730 /// XM_005271920 /// XM_005271921 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006449 // regulation of translational termination // traceable author statement /// 0006479 // protein methylation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // traceable author statement /// 0003747 // translation release factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008079 // translation termination factor activity // traceable author statement /// 0016149 // translation release factor activity, codon specific // inferred from electronic annotation /// 0043022 // ribosome binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -36.12 266.39 -1.97 0.09 0.13 -4.55
208732_at 208732_at AI743756 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI743756 /FEA=EST /DB_XREF=gi:5112044 /DB_XREF=est:wg53e08.x1 /CLONE=IMAGE:2368838 /UG=Hs.78305 RAB2, member RAS oncogene family /FL=gb:NM_002865.1 gb:M28213.1 AI743756 RAB2A, member RAS oncogene family RAB2A 5862 NM_001242644 /// NM_002865 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay 34.20 185.50 1.97 0.09 0.13 -4.55
221664_s_at 221664_s_at AF154005 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF154005.1 /DEF=Homo sapiens junction adhesion molecule mRNA, complete cds. /FEA=mRNA /PROD=junction adhesion molecule /DB_XREF=gi:5457118 /UG=Hs.286218 junctional adhesion molecule /FL=gb:AF154005.1 AF154005 F11 receptor F11R 50848 NM_016946 /// NM_144501 /// NM_144502 /// NM_144503 /// NM_144504 0006954 // inflammatory response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0045216 // cell-cell junction organization // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0070830 // tight junction assembly // traceable author statement 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030054 // cell junction // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -68.45 240.20 -1.97 0.09 0.13 -4.55
210664_s_at 210664_s_at AF021834 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF021834.1 /DEF=Homo sapiens tissue factor pathway inhibitor beta (TFPIbeta) mRNA, complete cds. /FEA=mRNA /GEN=TFPIbeta /PROD=tissue factor pathway inhibitor beta /DB_XREF=gi:4103170 /UG=Hs.170279 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) /FL=gb:AF021834.1 AF021834 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) TFPI 7035 NM_001032281 /// NM_006287 /// XM_005246818 /// XM_005246819 /// XM_005246820 /// XM_006712720 0007596 // blood coagulation // traceable author statement /// 0007598 // blood coagulation, extrinsic pathway // traceable author statement /// 0007599 // hemostasis // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -113.57 385.16 -1.97 0.09 0.14 -4.55
200812_at 200812_at NM_006429 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006429.1 /DEF=Homo sapiens chaperonin containing TCP1, subunit 7 (eta) (CCT7), mRNA. /FEA=mRNA /GEN=CCT7 /PROD=chaperonin containing TCP1, subunit 7 (eta) /DB_XREF=gi:5453606 /UG=Hs.108809 chaperonin containing TCP1, subunit 7 (eta) /FL=gb:AF026292.1 gb:NM_006429.1 NM_006429 chaperonin containing TCP1, subunit 7 (eta) CCT7 10574 NM_001009570 /// NM_001166284 /// NM_001166285 /// NM_006429 /// NR_029402 /// NR_029403 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 45.95 384.45 1.97 0.09 0.14 -4.55
210438_x_at 210438_x_at M25077 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M25077.1 /DEF=Human SS-ARo ribonucleoprotein autoantigen 60 kd subunit mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:387656 /UG=Hs.554 Sjogren syndrome antigen A2 (60kD, ribonucleoprotein autoantigen SS-ARo) /FL=gb:M25077.1 M25077 TROVE domain family, member 2 TROVE2 6738 NM_001042369 /// NM_001042370 /// NM_001173524 /// NM_001173525 /// NM_004600 /// NR_033393 /// XM_006711495 /// XM_006711496 /// XM_006711497 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0030030 // cell projection organization // inferred from electronic annotation /// 0060271 // cilium morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 52.38 252.41 1.97 0.09 0.14 -4.55
209075_s_at 209075_s_at AY009128 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AY009128.1 /DEF=Homo sapiens ISCU2 (ISCU) mRNA, complete cds, alternatively spliced. /FEA=mRNA /GEN=ISCU /PROD=ISCU2 /DB_XREF=gi:11545706 /UG=Hs.9908 nitrogen fixation cluster-like /FL=gb:AY009128.1 AY009128 iron-sulfur cluster assembly enzyme ISCU 23479 NM_014301 /// NM_213595 /// XM_005268760 /// XM_005268761 /// XM_006719315 /// XM_006719316 /// XR_429087 0009399 // nitrogen fixation // traceable author statement /// 0016226 // iron-sulfur cluster assembly // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // inferred from direct assay 0005506 // iron ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 36.92 362.84 1.97 0.09 0.14 -4.55
200046_at 200046_at NM_001344 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001344.1 /DEF=Homo sapiens defender against cell death 1 (DAD1), mRNA. /FEA=mRNA /GEN=DAD1 /PROD=defender against cell death 1 /DB_XREF=gi:4503252 /UG=Hs.82890 defender against cell death 1 /FL=gb:NM_001344.1 gb:D15057.1 NM_001344 defender against cell death 1 DAD1 1603 NM_001344 0001824 // blastocyst development // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // inferred by curator /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0008250 // oligosaccharyltransferase complex // inferred from sequence or structural similarity /// 0008250 // oligosaccharyltransferase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004576 // oligosaccharyl transferase activity // inferred from sequence or structural similarity /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred by curator /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 115.12 1001.69 1.96 0.09 0.14 -4.55
212052_s_at 212052_s_at AB014576 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB014576.1 /DEF=Homo sapiens mRNA for KIAA0676 protein, partial cds. /FEA=mRNA /GEN=KIAA0676 /PROD=KIAA0676 protein /DB_XREF=gi:3327165 /UG=Hs.155829 KIAA0676 protein AB014576 TBC1 domain family, member 9B (with GRAM domain) TBC1D9B 23061 NM_015043 /// NM_198868 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation -29.70 200.43 -1.96 0.09 0.14 -4.55
216295_s_at 216295_s_at X81636 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X81636.1 /DEF=H.sapiens clathrin light chain a gene. /FEA=mRNA /DB_XREF=gi:704460 /UG=Hs.285688 H.sapiens clathrin light chain a gene X81636 clathrin, light chain A CLTA 1211 NM_001076677 /// NM_001184760 /// NM_001184761 /// NM_001184762 /// NM_001833 /// NM_007096 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from sequence or structural similarity /// 0030118 // clathrin coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0071439 // clathrin complex // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032050 // clathrin heavy chain binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation 67.10 721.50 1.96 0.09 0.14 -4.55
38269_at 38269_at AL050147 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL050147:Homo sapiens mRNA; cDNA DKFZp586E0820 (from clone DKFZp586E0820) /cds=(0,1630) /gb=AL050147 /gi=4884153 /ug=Hs.91146 /len=1837 AL050147 protein kinase D2 PRKD2 25865 NM_001079880 /// NM_001079881 /// NM_001079882 /// NM_016457 /// XM_005258716 0001525 // angiogenesis // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from genetic interaction /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008219 // cell death // inferred from mutant phenotype /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0032743 // positive regulation of interleukin-2 production // inferred from sequence or structural similarity /// 0032757 // positive regulation of interleukin-8 production // inferred from mutant phenotype /// 0032793 // positive regulation of CREB transcription factor activity // inferred from genetic interaction /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from genetic interaction /// 0035556 // intracellular signal transduction // inferred from genetic interaction /// 0035556 // intracellular signal transduction // inferred from mutant phenotype /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from genetic interaction /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from mutant phenotype /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from genetic interaction /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from genetic interaction /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from mutant phenotype /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from genetic interaction /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // traceable author statement /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // inferred from direct assay /// 0050862 // positive regulation of T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0061154 // endothelial tube morphogenesis // traceable author statement /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 1901727 // positive regulation of histone deacetylase activity // inferred from genetic interaction /// 1902533 // positive regulation of intracellular signal transduction // inferred from mutant phenotype /// 2000573 // positive regulation of DNA biosynthetic process // inferred from sequence or structural similarity /// 2001028 // positive regulation of endothelial cell chemotaxis // inferred from mutant phenotype 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // non-traceable author statement /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -47.28 312.99 -1.96 0.09 0.14 -4.55
202696_at 202696_at NM_005109 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005109.1 /DEF=Homo sapiens oxidative-stress responsive 1 (OSR1), mRNA. /FEA=mRNA /GEN=OSR1 /PROD=oxidative-stress responsive 1 /DB_XREF=gi:4826877 /UG=Hs.95220 oxidative-stress responsive 1 /FL=gb:AB017642.1 gb:NM_005109.1 gb:AB029024.1 NM_005109 oxidative stress responsive 1 OXSR1 9943 NM_005109 /// XM_005265638 0006468 // protein phosphorylation // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0023014 // signal transduction by phosphorylation // not recorded /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -35.65 173.43 -1.96 0.09 0.14 -4.55
221494_x_at 221494_x_at AF085358 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF085358.1 /DEF=Homo sapiens HSPC029 mRNA, complete cds. /FEA=mRNA /PROD=HSPC029 /DB_XREF=gi:5114050 /UG=Hs.283781 muscle specific gene /FL=gb:NM_013234.1 gb:BC001031.1 gb:AF315506.1 gb:AB019392.1 gb:AF077051.1 gb:AF085358.1 AF085358 eukaryotic translation initiation factor 3, subunit K EIF3K 27335 NM_013234 /// XM_006723147 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from electronic annotation -137.63 715.01 -1.95 0.09 0.14 -4.55
220028_at 220028_at NM_001106 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001106.2 /DEF=Homo sapiens activin A receptor, type IIB (ACVR2B), mRNA. /FEA=mRNA /GEN=ACVR2B /PROD=activin A type IIB receptor precursor /DB_XREF=gi:10862697 /UG=Hs.23994 activin A receptor, type IIB /FL=gb:NM_001106.2 NM_001106 activin A receptor, type IIB ACVR2B 93 NM_001106 /// XM_005265583 0001501 // skeletal system development // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0001946 // lymphangiogenesis // inferred from sequence or structural similarity /// 0001974 // blood vessel remodeling // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // traceable author statement /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from mutant phenotype /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // traceable author statement /// 0031016 // pancreas development // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // inferred from electronic annotation /// 0032924 // activin receptor signaling pathway // traceable author statement /// 0032927 // positive regulation of activin receptor signaling pathway // inferred from direct assay /// 0035265 // organ growth // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060836 // lymphatic endothelial cell differentiation // inferred from sequence or structural similarity /// 0060840 // artery development // inferred from sequence or structural similarity /// 0060841 // venous blood vessel development // inferred from sequence or structural similarity /// 0061298 // retina vasculature development in camera-type eye // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from physical interaction 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016362 // activin receptor activity, type II // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017002 // activin-activated receptor activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from physical interaction /// 0034711 // inhibin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from electronic annotation -23.95 78.70 -1.95 0.09 0.14 -4.55
221817_at 221817_at AI684664 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI684664 /FEA=EST /DB_XREF=gi:4895958 /DB_XREF=est:wa73b12.x1 /CLONE=IMAGE:2301791 /UG=Hs.21701 linked to Surfeit genes in Fugu rubripes 2; LSFR2 gene 2 AI684664 dolichyldiphosphatase 1 DOLPP1 57171 NM_001135917 /// NM_020438 /// NR_072983 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // not recorded /// 0006487 // protein N-linked glycosylation // inferred from sequence or structural similarity /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // traceable author statement /// 0006489 // dolichyl diphosphate biosynthetic process // traceable author statement /// 0008610 // lipid biosynthetic process // not recorded /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // not recorded /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from sequence or structural similarity 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047874 // dolichyldiphosphatase activity // not recorded /// 0047874 // dolichyldiphosphatase activity // inferred from sequence or structural similarity 34.88 140.36 1.95 0.09 0.14 -4.55
202513_s_at 202513_s_at NM_006245 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006245.1 /DEF=Homo sapiens protein phosphatase 2, regulatory subunit B (B56), delta isoform (PPP2R5D), mRNA. /FEA=mRNA /GEN=PPP2R5D /PROD=protein phosphatase 2, regulatory subunit B(B56), delta isoform /DB_XREF=gi:5453953 /UG=Hs.118244 protein phosphatase 2, regulatory subunit B (B56), delta isoform /FL=gb:BC001095.1 gb:L76702.1 gb:AB000634.1 gb:NM_006245.1 NM_006245 protein phosphatase 2, regulatory subunit B', delta PPP2R5D 5528 NM_001270476 /// NM_006245 /// NM_180976 /// NM_180977 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006096 // glycolytic process // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0016311 // dephosphorylation // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004722 // protein serine/threonine phosphatase activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 42.10 241.10 1.95 0.09 0.14 -4.55
201152_s_at 201152_s_at N31913 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N31913 /FEA=EST /DB_XREF=gi:1152312 /DB_XREF=est:yy21f10.s1 /CLONE=IMAGE:271915 /UG=Hs.28578 muscleblind (Drosophila)-like /FL=gb:NM_021038.1 gb:AB007888.1 N31913 muscleblind-like splicing regulator 1 MBNL1 4154 NM_021038 /// NM_207292 /// NM_207293 /// NM_207294 /// NM_207295 /// NM_207296 /// NM_207297 /// XM_005247457 /// XM_005247458 /// XM_005247459 /// XM_005247460 /// XM_005247461 /// XM_005247462 /// XM_005247463 /// XM_005247464 /// XM_005247465 /// XM_005247466 /// XM_005247467 /// XM_005247468 /// XM_005247469 /// XM_005247470 /// XM_005247471 /// XM_005247472 /// XM_005247473 /// XM_005247474 /// XM_005247475 /// XM_005247476 /// XM_005247477 /// XM_006713639 /// XM_006713640 /// XM_006713641 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from direct assay /// 0030326 // embryonic limb morphogenesis // inferred from sequence or structural similarity /// 0043484 // regulation of RNA splicing // inferred from direct assay /// 0045445 // myoblast differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 91.60 897.15 1.95 0.09 0.14 -4.55
208517_x_at 208517_x_at NM_001207 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001207.1 /DEF=Homo sapiens basic transcription factor 3 (BTF3), mRNA. /FEA=CDS /GEN=BTF3 /PROD=basic transcription factor 3 /DB_XREF=gi:4502464 /UG=Hs.101025 basic transcription factor 3 /FL=gb:NM_001207.1 NM_001207 basic transcription factor 3 BTF3 689 NM_001037637 /// NM_001207 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -333.05 2149.47 -1.95 0.09 0.14 -4.55
201338_x_at 201338_x_at NM_002097 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002097.1 /DEF=Homo sapiens general transcription factor IIIA (GTF3A), mRNA. /FEA=mRNA /GEN=GTF3A /PROD=general transcription factor IIIA /DB_XREF=gi:4753158 /UG=Hs.75113 general transcription factor IIIA /FL=gb:D32257.1 gb:NM_002097.1 NM_002097 general transcription factor IIIA GTF3A 2971 NM_002097 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0009303 // rRNA transcription // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 58.82 318.91 1.95 0.09 0.14 -4.55
212224_at 212224_at NM_000689 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_000689.1 /DEF=Homo sapiens aldehyde dehydrogenase 1, soluble (ALDH1), mRNA. /FEA=CDS /GEN=ALDH1 /PROD=aldehyde dehydrogenase 1, soluble /DB_XREF=gi:4502030 /UG=Hs.76392 aldehyde dehydrogenase 1 family, member A1 /FL=gb:AF003341.1 gb:NM_000689.1 NM_000689 aldehyde dehydrogenase 1 family, member A1 ALDH1A1 216 NM_000689 0006069 // ethanol oxidation // traceable author statement /// 0006081 // cellular aldehyde metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008218 // bioluminescence // inferred from electronic annotation /// 0032320 // positive regulation of Ras GTPase activity // traceable author statement /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001758 // retinal dehydrogenase activity // inferred from electronic annotation /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004029 // aldehyde dehydrogenase (NAD) activity // not recorded /// 0005099 // Ras GTPase activator activity // traceable author statement /// 0005497 // androgen binding // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation 169.05 494.25 1.95 0.09 0.14 -4.55
200710_at 200710_at NM_000018 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000018.1 /DEF=Homo sapiens acyl-Coenzyme A dehydrogenase, very long chain (ACADVL), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=ACADVL /PROD=acyl-Coenzyme A dehydrogenase, very long chainprecursor /DB_XREF=gi:4557234 /UG=Hs.82208 acyl-Coenzyme A dehydrogenase, very long chain /FL=gb:D43682.1 gb:BC000399.1 gb:NM_000018.1 NM_000018 acyl-CoA dehydrogenase, very long chain ACADVL 37 NM_000018 /// NM_001033859 /// NM_001270447 /// NM_001270448 /// XM_006721516 0001659 // temperature homeostasis // inferred from sequence or structural similarity /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0015980 // energy derivation by oxidation of organic compounds // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from sequence or structural similarity /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from sequence or structural similarity /// 0046322 // negative regulation of fatty acid oxidation // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0090181 // regulation of cholesterol metabolic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0003995 // acyl-CoA dehydrogenase activity // traceable author statement /// 0004466 // long-chain-acyl-CoA dehydrogenase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation -29.02 270.24 -1.95 0.09 0.14 -4.55
200782_at 200782_at NM_001154 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001154.2 /DEF=Homo sapiens annexin A5 (ANXA5), mRNA. /FEA=mRNA /GEN=ANXA5 /PROD=annexin V /DB_XREF=gi:4809273 /UG=Hs.300711 annexin A5 /FL=gb:BC001429.1 gb:BC004993.1 gb:M18366.1 gb:J03745.1 gb:M21731.1 gb:M19384.1 gb:D00172.1 gb:NM_001154.2 NM_001154 annexin A5 ANXA5 308 NM_001154 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007599 // hemostasis // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0050819 // negative regulation of coagulation // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072563 // endothelial microparticle // inferred from electronic annotation 0004859 // phospholipase inhibitor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // traceable author statement /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay -299.30 1723.75 -1.95 0.09 0.14 -4.55
202112_at 202112_at NM_000552 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000552.2 /DEF=Homo sapiens von Willebrand factor (VWF), mRNA. /FEA=mRNA /GEN=VWF /PROD=von Willebrand factor precursor /DB_XREF=gi:9257255 /UG=Hs.110802 von Willebrand factor /FL=gb:NM_000552.2 NM_000552 von Willebrand factor VWF 7450 NM_000552 0001889 // liver development // inferred from electronic annotation /// 0001890 // placenta development // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0007155 // cell adhesion // inferred from direct assay /// 0007596 // blood coagulation // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0007597 // blood coagulation, intrinsic pathway // traceable author statement /// 0007599 // hemostasis // inferred from mutant phenotype /// 0009611 // response to wounding // traceable author statement /// 0030168 // platelet activation // inferred from direct assay /// 0030168 // platelet activation // non-traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0031589 // cell-substrate adhesion // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031091 // platelet alpha granule // non-traceable author statement /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0033093 // Weibel-Palade body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001948 // glycoprotein binding // inferred from direct assay /// 0002020 // protease binding // inferred from direct assay /// 0002020 // protease binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0019865 // immunoglobulin binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from direct assay -378.60 2115.12 -1.95 0.09 0.14 -4.55
215416_s_at 215416_s_at AC004472 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC004472 /DEF=Homo sapiens chromosome 9, P1 clone 11659 /FEA=CDS_5 /DB_XREF=gi:2984582 /UG=Hs.3439 stomatin-like 2 AC004472 stomatin (EPB72)-like 2 STOML2 30968 NM_001287031 /// NM_001287032 /// NM_001287033 /// NM_013442 0006851 // mitochondrial calcium ion transport // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0010876 // lipid localization // inferred from sequence or structural similarity /// 0010918 // positive regulation of mitochondrial membrane potential // inferred from mutant phenotype /// 0032623 // interleukin-2 production // inferred from sequence or structural similarity /// 0034982 // mitochondrial protein processing // inferred from sequence or structural similarity /// 0035710 // CD4-positive, alpha-beta T cell activation // inferred from sequence or structural similarity /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0090297 // positive regulation of mitochondrial DNA replication // inferred from mutant phenotype /// 1900210 // positive regulation of cardiolipin metabolic process // inferred from mutant phenotype /// 1990046 // stress-induced mitochondrial fusion // inferred from sequence or structural similarity 0001772 // immunological synapse // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008180 // COP9 signalosome // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019897 // extrinsic component of plasma membrane // inferred from direct assay /// 0042101 // T cell receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 1901612 // cardiolipin binding // inferred from direct assay -47.10 257.48 -1.94 0.09 0.14 -4.55
221536_s_at 221536_s_at AL136897 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136897.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434E248 (from clone DKFZp434E248); complete cds. /FEA=mRNA /GEN=DKFZp434E248 /PROD=hypothetical protein /DB_XREF=gi:12053290 /UG=Hs.301724 Homo sapiens mRNA; cDNA DKFZp434E248 (from clone DKFZp434E248); complete cds /FL=gb:AL136897.1 AL136897 large 60S subunit nuclear export GTPase 1 LSG1 55341 NM_018385 0006184 // GTP catabolic process // not recorded /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042254 // ribosome biogenesis // not recorded /// 0051168 // nuclear export // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0015030 // Cajal body // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from direct assay /// 0005525 // GTP binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 35.43 158.21 1.94 0.09 0.14 -4.55
211284_s_at 211284_s_at BC000324 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000324.1 /DEF=Homo sapiens, Similar to granulin, clone MGC:8480, mRNA, complete cds. /FEA=mRNA /PROD=Similar to granulin /DB_XREF=gi:12653114 /UG=Hs.180577 granulin /FL=gb:BC000324.1 BC000324 granulin GRN 2896 NM_001012479 /// NM_002087 /// XM_005257253 0001835 // blastocyst hatching // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -51.75 219.28 -1.94 0.09 0.14 -4.55
206015_s_at 206015_s_at NM_014947 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014947.1 /DEF=Homo sapiens KIAA1041 protein (KIAA1041), mRNA. /FEA=mRNA /GEN=KIAA1041 /PROD=KIAA1041 protein /DB_XREF=gi:7662455 /UG=Hs.26023 KIAA1041 protein /FL=gb:AB028964.1 gb:NM_014947.1 NM_014947 forkhead box J3 FOXJ3 22887 NM_001198850 /// NM_001198851 /// NM_001198852 /// NM_014947 /// XM_005270632 /// XM_006710458 /// XM_006710459 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0009790 // embryo development // /// 0009888 // tissue development // not recorded /// 0045893 // positive regulation of transcription, DNA-templated // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008301 // DNA binding, bending // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -50.10 181.78 -1.94 0.09 0.14 -4.55
201639_s_at 201639_s_at NM_013291 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013291.1 /DEF=Homo sapiens cleavage and polyadenylation specific factor 1, 160kD subunit (CPSF1), mRNA. /FEA=mRNA /GEN=CPSF1 /PROD=cleavage and polyadenylation specific factor 1,160kD subunit /DB_XREF=gi:9558724 /UG=Hs.83727 cleavage and polyadenylation specific factor 1, 160kD subunit /FL=gb:U37012.1 gb:AB046744.1 gb:NM_013291.1 NM_013291 cleavage and polyadenylation specific factor 1, 160kDa /// microRNA 1234 /// microRNA 6849 /// microRNA 939 CPSF1 /// MIR1234 /// MIR6849 /// MIR939 29894 /// 100126351 /// 100302196 /// 102466749 NM_013291 /// NR_030635 /// NR_031600 /// NR_106908 /// XM_006716548 /// XM_006716549 /// XM_006716550 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006378 // mRNA polyadenylation // inferred from direct assay /// 0006379 // mRNA cleavage // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 32.25 136.85 1.94 0.09 0.14 -4.55
221861_at 221861_at AL157484 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL157484.1 /DEF=Homo sapiens mRNA; cDNA DKFZp762M127 (from clone DKFZp762M127). /FEA=mRNA /DB_XREF=gi:7018527 /UG=Hs.22483 Homo sapiens mRNA; cDNA DKFZp762M127 (from clone DKFZp762M127) AL157484 arrestin, beta 1 ARRB1 408 NM_004041 /// NM_020251 /// XM_005273997 /// XM_005273998 /// XM_006718552 /// XM_006718553 /// XM_006718554 /// XM_006718555 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0002031 // G-protein coupled receptor internalization // inferred from mutant phenotype /// 0002092 // positive regulation of receptor internalization // inferred from mutant phenotype /// 0006309 // apoptotic DNA fragmentation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007602 // phototransduction // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0030168 // platelet activation // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // inferred from direct assay /// 0032717 // negative regulation of interleukin-8 production // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0034260 // negative regulation of GTPase activity // inferred from electronic annotation /// 0034393 // positive regulation of smooth muscle cell apoptotic process // inferred from electronic annotation /// 0035025 // positive regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035066 // positive regulation of histone acetylation // inferred from mutant phenotype /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0042699 // follicle-stimulating hormone signaling pathway // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043149 // stress fiber assembly // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0043547 // positive regulation of GTPase activity // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0090240 // positive regulation of histone H4 acetylation // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005765 // lysosomal membrane // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031143 // pseudopodium // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004857 // enzyme inhibitor activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from mutant phenotype /// 0005159 // insulin-like growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031691 // alpha-1A adrenergic receptor binding // inferred from electronic annotation /// 0031692 // alpha-1B adrenergic receptor binding // inferred from electronic annotation /// 0031701 // angiotensin receptor binding // inferred from physical interaction /// 0031762 // follicle-stimulating hormone receptor binding // inferred from electronic annotation /// 0031896 // V2 vasopressin receptor binding // inferred from electronic annotation /// 0035612 // AP-2 adaptor complex binding // inferred from electronic annotation /// 0035615 // clathrin adaptor activity // inferred from electronic annotation /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from mutant phenotype /// 0044325 // ion channel binding // inferred from electronic annotation /// 0045309 // protein phosphorylated amino acid binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from electronic annotation -49.45 227.35 -1.93 0.09 0.14 -4.55
204019_s_at 204019_s_at NM_015677 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015677.1 /DEF=Homo sapiens hypothetical protein (DKFZP586F1318), mRNA. /FEA=mRNA /GEN=DKFZP586F1318 /PROD=hypothetical protein /DB_XREF=gi:7661669 /UG=Hs.25213 hypothetical protein /FL=gb:NM_015677.1 NM_015677 SH3 and SYLF domain containing 1 SH3YL1 26751 NM_001159597 /// NM_001282682 /// NM_001282687 /// NM_015677 /// NR_104223 /// NR_104224 /// NR_104225 /// NR_104226 /// NR_104227 0006661 // phosphatidylinositol biosynthetic process // inferred from electronic annotation /// 1900027 // regulation of ruffle assembly // inferred from electronic annotation 0032587 // ruffle membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0019902 // phosphatase binding // inferred from direct assay /// 0035091 // phosphatidylinositol binding // inferred from direct assay 32.33 102.99 1.93 0.09 0.14 -4.55
214317_x_at 214317_x_at BE348997 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE348997 /FEA=EST /DB_XREF=gi:9260850 /DB_XREF=est:ht47e11.x1 /CLONE=IMAGE:3149900 /UG=Hs.180920 ribosomal protein S9 BE348997 ribosomal protein S9 RPS9 6203 NM_001013 /// XM_005259135 /// XM_005259136 /// XM_005277084 /// XM_005277085 /// XM_005277274 /// XM_005277315 /// XM_005277316 /// XM_005278287 /// XM_005278288 /// XM_006725876 /// XM_006725877 /// XM_006725964 /// XM_006725965 /// XM_006726063 /// XM_006726064 /// XM_006726164 /// XM_006726165 /// XM_006726201 /// XM_006726202 /// XR_243946 /// XR_243947 /// XR_254260 /// XR_254311 /// XR_254323 /// XR_254324 /// XR_254517 /// XR_254518 /// XR_430207 /// XR_430911 /// XR_430953 /// XR_430986 /// XR_430987 /// XR_430988 /// XR_431006 /// XR_431007 /// XR_431008 /// XR_431025 /// XR_431026 /// XR_431027 /// XR_431056 /// XR_431057 /// XR_431058 /// XR_431067 /// XR_431068 /// XR_431069 /// XR_431090 /// XR_431099 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045182 // translation regulator activity // inferred from mutant phenotype -173.80 658.73 -1.93 0.09 0.14 -4.55
210987_x_at 210987_x_at M19267 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M19267.1 /DEF=Human tropomyosin mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:339943 /UG=Hs.77899 tropomyosin 1 (alpha) /FL=gb:M19267.1 M19267 tropomyosin 1 (alpha) TPM1 7168 NM_000366 /// NM_001018004 /// NM_001018005 /// NM_001018006 /// NM_001018007 /// NM_001018008 /// NM_001018020 /// XM_005254637 /// XM_005254638 /// XM_005254639 /// XM_005254640 /// XM_005254641 /// XM_005254643 /// XM_005254644 /// XM_005254645 /// XM_005254646 /// XM_005254647 /// XM_005254648 /// XM_005254649 /// XM_005254650 /// XM_005254651 /// XM_005254652 /// XM_005254653 /// XM_006720667 /// XM_006720668 /// XM_006720669 /// XR_429470 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003065 // positive regulation of heart rate by epinephrine // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0006937 // regulation of muscle contraction // traceable author statement /// 0007010 // cytoskeleton organization // traceable author statement /// 0008016 // regulation of heart contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from sequence or structural similarity /// 0030049 // muscle filament sliding // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0031529 // ruffle organization // inferred from sequence or structural similarity /// 0032781 // positive regulation of ATPase activity // inferred from sequence or structural similarity /// 0034614 // cellular response to reactive oxygen species // inferred from expression pattern /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0045214 // sarcomere organization // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from sequence or structural similarity /// 0051496 // positive regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005862 // muscle thin filament tropomyosin // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030017 // sarcomere // traceable author statement /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032059 // bleb // inferred from mutant phenotype /// 0032587 // ruffle membrane // inferred from direct assay 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003779 // actin binding // traceable author statement /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0008092 // cytoskeletal protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // traceable author statement -214.00 1812.97 -1.93 0.09 0.14 -4.55
202520_s_at 202520_s_at NM_000249 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000249.1 /DEF=Homo sapiens mutL (E. coli) homolog 1 (colon cancer, nonpolyposis type 2) (MLH1), mRNA. /FEA=mRNA /GEN=MLH1 /PROD=mutL homolog 1 /DB_XREF=gi:4557756 /UG=Hs.57301 mutL (E. coli) homolog 1 (colon cancer, nonpolyposis type 2) /FL=gb:NM_000249.1 gb:U07343.1 gb:U07418.1 NM_000249 mutL homolog 1 MLH1 4292 NM_000249 /// NM_001167617 /// NM_001167618 /// NM_001167619 /// NM_001258271 /// NM_001258273 /// NM_001258274 /// XM_005265161 /// XM_005265163 /// XM_005265164 /// XM_005265166 /// XR_427268 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // inferred from electronic annotation /// 0000712 // resolution of meiotic recombination intermediates // inferred from electronic annotation /// 0002204 // somatic recombination of immunoglobulin genes involved in immune response // inferred from electronic annotation /// 0006200 // ATP catabolic process // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // inferred from genetic interaction /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007060 // male meiosis chromosome segregation // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007129 // synapsis // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // /// 0007140 // male meiosis // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016447 // somatic recombination of immunoglobulin gene segments // inferred from electronic annotation /// 0043060 // meiotic metaphase I plate congression // inferred from electronic annotation /// 0045132 // meiotic chromosome segregation // inferred from electronic annotation /// 0045190 // isotype switching // inferred from electronic annotation /// 0045950 // negative regulation of mitotic recombination // inferred from electronic annotation /// 0048477 // oogenesis // inferred from electronic annotation /// 0051257 // spindle midzone assembly involved in meiosis // inferred from electronic annotation 0000793 // condensed chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000795 // synaptonemal complex // not recorded /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005712 // chiasma // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0032300 // mismatch repair complex // inferred from electronic annotation /// 0032300 // mismatch repair complex // /// 0032389 // MutLalpha complex // not recorded /// 0032390 // MutLbeta complex // 0003697 // single-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0032137 // guanine/thymine mispair binding // inferred from electronic annotation /// 0032407 // MutSalpha complex binding // inferred from direct assay /// 0043566 // structure-specific DNA binding // inferred from electronic annotation 30.58 267.54 1.93 0.09 0.14 -4.55
214452_at 214452_at NM_005504 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005504.1 /DEF=Homo sapiens branched chain aminotransferase 1, cytosolic (BCAT1), mRNA. /FEA=CDS /GEN=BCAT1 /PROD=branched chain aminotransferase 1, cytosolic /DB_XREF=gi:5031606 /UG=Hs.157205 branched chain aminotransferase 1, cytosolic /FL=gb:U21551.1 gb:NM_005504.1 NM_005504 branched chain amino-acid transaminase 1, cytosolic BCAT1 586 NM_001178091 /// NM_001178092 /// NM_001178093 /// NM_001178094 /// NM_005504 /// XM_005253460 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009081 // branched-chain amino acid metabolic process // inferred from electronic annotation /// 0009082 // branched-chain amino acid biosynthetic process // inferred from electronic annotation /// 0009083 // branched-chain amino acid catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004084 // branched-chain-amino-acid transaminase activity // not recorded /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0052654 // L-leucine transaminase activity // inferred from electronic annotation /// 0052655 // L-valine transaminase activity // inferred from electronic annotation /// 0052656 // L-isoleucine transaminase activity // inferred from electronic annotation -74.68 258.71 -1.93 0.09 0.14 -4.55
200598_s_at 200598_s_at AI582238 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI582238 /FEA=EST /DB_XREF=gi:4568135 /DB_XREF=est:tq65c10.x1 /CLONE=IMAGE:2213682 /UG=Hs.82689 tumor rejection antigen (gp96) 1 /FL=gb:NM_003299.1 AI582238 heat shock protein 90kDa beta (Grp94), member 1 /// microRNA 3652 HSP90B1 /// MIR3652 7184 /// 100500842 NM_003299 /// NR_037425 0001666 // response to hypoxia // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // non-traceable author statement /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031247 // actin rod assembly // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051208 // sequestering of calcium ion // non-traceable author statement /// 0071318 // cellular response to ATP // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from direct assay /// 0046790 // virion binding // inferred from physical interaction /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation -194.53 1035.66 -1.93 0.09 0.14 -4.55
212348_s_at 212348_s_at AB011173 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB011173.1 /DEF=Homo sapiens mRNA for KIAA0601 protein, partial cds. /FEA=mRNA /GEN=KIAA0601 /PROD=KIAA0601 protein /DB_XREF=gi:3043725 /UG=Hs.174174 KIAA0601 protein AB011173 lysine (K)-specific demethylase 1A KDM1A 23028 NM_001009999 /// NM_015013 /// XM_005245786 /// XM_006710472 /// XM_006710473 /// XM_006710474 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006482 // protein demethylation // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010725 // regulation of primitive erythrocyte differentiation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030851 // granulocyte differentiation // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from mutant phenotype /// 0033169 // histone H3-K9 demethylation // inferred from direct assay /// 0034720 // histone H3-K4 demethylation // inferred from direct assay /// 0043392 // negative regulation of DNA binding // inferred by curator /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0045648 // positive regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045654 // positive regulation of megakaryocyte differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046886 // positive regulation of hormone biosynthetic process // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051572 // negative regulation of histone H3-K4 methylation // inferred from electronic annotation /// 0051573 // negative regulation of histone H3-K9 methylation // inferred from electronic annotation /// 0055001 // muscle cell development // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from mutant phenotype /// 2000179 // positive regulation of neural precursor cell proliferation // inferred from electronic annotation /// 2000648 // positive regulation of stem cell proliferation // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0000790 // nuclear chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay 0001085 // RNA polymerase II transcription factor binding // inferred from electronic annotation /// 0002039 // p53 binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from mutant phenotype /// 0032451 // demethylase activity // inferred from mutant phenotype /// 0032452 // histone demethylase activity // inferred from direct assay /// 0032453 // histone demethylase activity (H3-K4 specific) // inferred from direct assay /// 0032454 // histone demethylase activity (H3-K9 specific) // inferred from direct assay /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // inferred from direct assay /// 0043426 // MRF binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from sequence or structural similarity /// 0050660 // flavin adenine dinucleotide binding // inferred from direct assay /// 0050681 // androgen receptor binding // inferred from direct assay 58.75 229.82 1.93 0.09 0.14 -4.55
212357_at 212357_at AI096888 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI096888 /FEA=EST /DB_XREF=gi:3446470 /DB_XREF=est:qb58f08.x1 /CLONE=IMAGE:1704327 /UG=Hs.75400 KIAA0280 protein AI096888 family with sequence similarity 168, member A FAM168A 23201 NM_001286050 /// NM_001286051 /// NM_015159 /// XM_005273852 /// XM_006718482 24.65 31.48 1.92 0.09 0.14 -4.55
208540_x_at 208540_x_at NM_021039 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021039.1 /DEF=Homo sapiens S100 calcium-binding protein A14 (calgizzarin) (S100A14), mRNA. /FEA=CDS /GEN=S100A14 /PROD=S100 calcium-binding protein A14 (calgizzarin) /DB_XREF=gi:10567825 /UG=Hs.247697 S100 calcium-binding protein A14 (calgizzarin) /FL=gb:NM_021039.1 NM_021039 S100 calcium binding protein A11 pseudogene 1 /// S100A11P1 /// S100A11P1 43.15 372.02 1.92 0.09 0.14 -4.55
201659_s_at 201659_s_at NM_001177 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001177.2 /DEF=Homo sapiens ADP-ribosylation factor-like 1 (ARL1), mRNA. /FEA=mRNA /GEN=ARL1 /PROD=ADP-ribosylation factor-like 1 /DB_XREF=gi:4755126 /UG=Hs.242894 ADP-ribosylation factor-like 1 /FL=gb:NM_001177.2 gb:L28997.1 NM_001177 ADP-ribosylation factor-like 1 ARL1 400 NM_001177 /// XM_005268869 0006184 // GTP catabolic process // inferred from direct assay /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from sequence or structural similarity /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0009404 // toxin metabolic process // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0031584 // activation of phospholipase D activity // inferred from direct assay /// 0034067 // protein localization to Golgi apparatus // inferred from mutant phenotype /// 0042147 // retrograde transport, endosome to Golgi // inferred from mutant phenotype /// 0048193 // Golgi vesicle transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0008047 // enzyme activator activity // inferred from direct assay /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 29.78 194.39 1.92 0.09 0.14 -4.55
215127_s_at 215127_s_at AL517946 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL517946 /FEA=EST /DB_XREF=gi:12781439 /DB_XREF=est:AL517946 /CLONE=CS0DA004YB11 (3 prime) /UG=Hs.241567 RNA binding motif, single stranded interacting protein 1 AL517946 RNA binding motif, single stranded interacting protein 1 RBMS1 5937 NM_002897 /// NM_016836 /// NM_016839 /// XM_005246737 /// XM_005246738 /// XM_005246739 /// XM_005246740 /// XM_005246741 /// XM_006712671 /// XM_006712672 /// XM_006712673 /// XM_006712674 /// XM_006712675 0006260 // DNA replication // non-traceable author statement /// 0006396 // RNA processing // traceable author statement 0005634 // nucleus // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // non-traceable author statement /// 0003697 // single-stranded DNA binding // non-traceable author statement /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 78.20 336.82 1.92 0.09 0.14 -4.55
212761_at 212761_at AI949687 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI949687 /FEA=EST /DB_XREF=gi:5741997 /DB_XREF=est:wq13g04.x1 /CLONE=IMAGE:2471190 /UG=Hs.173638 transcription factor 7-like 2 (T-cell specific, HMG-box) AI949687 transcription factor 7-like 2 (T-cell specific, HMG-box) TCF7L2 6934 NM_001146274 /// NM_001146283 /// NM_001146284 /// NM_001146285 /// NM_001146286 /// NM_001198525 /// NM_001198526 /// NM_001198527 /// NM_001198528 /// NM_001198529 /// NM_001198530 /// NM_001198531 /// NM_030756 /// XM_005270071 /// XM_005270073 /// XM_005270074 /// XM_005270075 /// XM_005270076 /// XM_005270077 /// XM_005270078 /// XM_005270079 /// XM_005270080 /// XM_005270082 /// XM_005270083 /// XM_005270084 /// XM_005270085 /// XM_005270086 /// XM_005270088 /// XM_005270089 /// XM_005270091 /// XM_005270092 /// XM_005270093 /// XM_005270094 /// XM_005270095 /// XM_005270096 /// XM_005270097 /// XM_005270098 /// XM_005270099 /// XM_005270100 /// XM_005270101 /// XM_005270102 /// XM_005270103 /// XM_005270104 /// XM_005270105 /// XM_006717955 /// XM_006717956 /// XM_006717957 /// XM_006717958 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001568 // blood vessel development // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007420 // brain development // not recorded /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0009749 // response to glucose // inferred from sequence or structural similarity /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // inferred from mutant phenotype /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030538 // embryonic genitalia morphogenesis // inferred from electronic annotation /// 0031016 // pancreas development // traceable author statement /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0032252 // secretory granule localization // inferred from electronic annotation /// 0032350 // regulation of hormone metabolic process // inferred from direct assay /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035411 // catenin import into nucleus // inferred from electronic annotation /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043570 // maintenance of DNA repeat elements // inferred from mutant phenotype /// 0043588 // skin development // inferred from electronic annotation /// 0044334 // canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition // inferred from mutant phenotype /// 0045444 // fat cell differentiation // inferred from direct assay /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046621 // negative regulation of organ growth // inferred from electronic annotation /// 0046827 // positive regulation of protein export from nucleus // inferred from mutant phenotype /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048619 // embryonic hindgut morphogenesis // inferred from electronic annotation /// 0048625 // myoblast fate commitment // inferred from direct assay /// 0048641 // regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0048660 // regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048699 // generation of neurons // not recorded /// 0048713 // regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0060070 // canonical Wnt signaling pathway // inferred by curator /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0061178 // regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 2000675 // negative regulation of type B pancreatic cell apoptotic process // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from direct assay /// 0070369 // beta-catenin-TCF7L2 complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from direct assay /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0035257 // nuclear hormone receptor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0045295 // gamma-catenin binding // inferred from physical interaction /// 0070016 // armadillo repeat domain binding // inferred from physical interaction -26.28 189.51 -1.92 0.09 0.14 -4.55
212279_at 212279_at BE779865 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE779865 /FEA=EST /DB_XREF=gi:10201075 /DB_XREF=est:601465390F1 /CLONE=IMAGE:3868390 /UG=Hs.199695 hypothetical protein BE779865 transmembrane protein 97 TMEM97 27346 NM_014573 /// XM_005257965 0001558 // regulation of cell growth // non-traceable author statement /// 0042632 // cholesterol homeostasis // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 43.50 182.25 1.92 0.09 0.14 -4.55
217770_at 217770_at NM_015937 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015937.1 /DEF=Homo sapiens CGI-06 protein (LOC51604), mRNA. /FEA=mRNA /GEN=LOC51604 /PROD=CGI-06 protein /DB_XREF=gi:7706257 /UG=Hs.84038 CGI-06 protein /FL=gb:AF132940.1 gb:NM_015937.1 NM_015937 phosphatidylinositol glycan anchor biosynthesis, class T PIGT 51604 NM_001184728 /// NM_001184729 /// NM_001184730 /// NM_015937 /// NR_047691 /// NR_047692 /// NR_047693 /// NR_047694 /// NR_047695 /// XM_005260430 /// XM_005260432 0006501 // C-terminal protein lipidation // traceable author statement /// 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016255 // attachment of GPI anchor to protein // traceable author statement /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051402 // neuron apoptotic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // non-traceable author statement /// 0042765 // GPI-anchor transamidase complex // traceable author statement 0003923 // GPI-anchor transamidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -31.57 169.04 -1.92 0.09 0.14 -4.55
35265_at 35265_at AF044263 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U31501:Human fragile X mental retardation syndrome related protein (FXR2) mRNA, complete cds /cds=(227,2248) /gb=U31501 /gi=1098636 /ug=Hs.52788 /len=2849 AF044263 fragile X mental retardation, autosomal homolog 2 FXR2 9513 NM_004860 /// XR_243572 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 24.82 103.69 1.91 0.10 0.15 -4.55
219664_s_at 219664_s_at NM_020664 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020664.1 /DEF=Homo sapiens 2,4-dienoyl CoA reductase 2, peroxisomal (DECR2), mRNA. /FEA=mRNA /GEN=DECR2 /PROD=peroxisomal 2,4-dienoyl-CoA reductase /DB_XREF=gi:10190703 /UG=Hs.15898 2,4-dienoyl CoA reductase 2, peroxisomal /FL=gb:NM_020664.1 NM_020664 2,4-dienoyl CoA reductase 2, peroxisomal DECR2 26063 NM_020664 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from physical interaction /// 0008670 // 2,4-dienoyl-CoA reductase (NADPH) activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019166 // trans-2-enoyl-CoA reductase (NADPH) activity // inferred from direct assay 39.27 65.19 1.91 0.10 0.15 -4.55
213153_at 213153_at AB028999 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB028999.1 /DEF=Homo sapiens mRNA for KIAA1076 protein, partial cds. /FEA=mRNA /GEN=KIAA1076 /PROD=KIAA1076 protein /DB_XREF=gi:5689488 /UG=Hs.154525 KIAA1076 protein AB028999 SET domain containing 1B SETD1B 23067 NM_015048 /// XM_005253858 /// XM_006719295 /// XM_006719296 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0051568 // histone H3-K4 methylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from direct assay /// 0048188 // Set1C/COMPASS complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from direct assay -56.40 190.30 -1.91 0.10 0.15 -4.55
217393_x_at 217393_x_at AL109622 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL109622 /DEF=Human DNA sequence from clone RP3-526F5 on chromosome Xq26.3-28. Contains the gene for a novel protein similar to UBE2N (ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13)), ESTs, STSs and GSSs /FEA=mRNA /DB_XREF=gi:6002166 /UG=Hs.272352 Human DNA sequence from clone RP3-526F5 on chromosome Xq26.3-28. Contains the gene for a novel protein similar to UBE2N (ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13)), ESTs, STSs and GSSs AL109622 ubiquitin-conjugating enzyme E2N-like UBE2NL 389898 NM_001012989 /// NR_121210 0008152 // metabolic process // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 44.70 209.90 1.91 0.10 0.15 -4.55
200029_at 200029_at NM_000981 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000981.1 /DEF=Homo sapiens ribosomal protein L19 (RPL19), mRNA. /FEA=mRNA /GEN=RPL19 /PROD=ribosomal protein L19 /DB_XREF=gi:4506608 /UG=Hs.252723 ribosomal protein L19 /FL=gb:BC000530.1 gb:NM_000981.1 NM_000981 ribosomal protein L19 RPL19 6143 NM_000981 /// XM_005257564 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -370.88 2799.16 -1.91 0.10 0.15 -4.55
212111_at 212111_at AA628051 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA628051 /FEA=EST /DB_XREF=gi:2540050 /DB_XREF=est:ns67a01.s1 /CLONE=IMAGE:1188648 /UG=Hs.106823 H.sapiens gene from PAC 426I6, similar to syntaxin 7 AA628051 syntaxin 12 STX12 23673 NM_177424 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0033344 // cholesterol efflux // inferred from direct assay /// 0050821 // protein stabilization // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031083 // BLOC-1 complex // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000149 // SNARE binding // not recorded /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction 41.83 117.19 1.91 0.10 0.15 -4.55
212661_x_at 212661_x_at BE731738 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE731738 /FEA=EST /DB_XREF=gi:10145730 /DB_XREF=est:601568154F1 /CLONE=IMAGE:3842844 /UG=Hs.182937 peptidylprolyl isomerase A (cyclophilin A) BE731738 peptidyl-prolyl cis-trans isomerase A-like /// peptidylprolyl isomerase A (cyclophilin A) LOC101060363 /// PPIA 5478 /// 101060363 NM_021130 /// NM_203430 /// NM_203431 /// XM_003960117 /// XM_005246048 /// XM_005249791 /// XM_005275876 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0002576 // platelet degranulation // traceable author statement /// 0006278 // RNA-dependent DNA replication // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019061 // uncoating of virus // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019076 // viral release from host cell // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030260 // entry into host cell // traceable author statement /// 0034389 // lipid particle organization // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // inferred from mutant phenotype /// 0045069 // regulation of viral genome replication // traceable author statement /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0075713 // establishment of integrated proviral latency // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046790 // virion binding // non-traceable author statement /// 0051082 // unfolded protein binding // traceable author statement -956.57 4911.14 -1.91 0.10 0.15 -4.55
202406_s_at 202406_s_at NM_003252 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003252.2 /DEF=Homo sapiens TIA1 cytotoxic granule-associated RNA-binding protein-like 1 (TIAL1), transcript variant 1, mRNA. /FEA=mRNA /GEN=TIAL1 /PROD=TIA1 cytotoxic granule-associated RNA-bindingprotein-like 1, isoform 1 /DB_XREF=gi:13435392 /UG=Hs.182741 TIA1 cytotoxic granule-associated RNA-binding protein-like 1 /FL=gb:NM_003252.2 gb:M96954.1 NM_003252 TIA1 cytotoxic granule-associated RNA binding protein-like 1 TIAL1 7073 NM_001033925 /// NM_003252 /// XM_005270108 /// XM_005270109 /// XM_005270110 /// XM_006717959 /// XR_428715 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006952 // defense response // traceable author statement /// 0007281 // germ cell development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0017145 // stem cell division // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005764 // lysosome // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -39.78 272.96 -1.91 0.10 0.15 -4.55
213727_x_at 213727_x_at AI743654 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI743654 /FEA=EST /DB_XREF=gi:5111942 /DB_XREF=est:wg41d01.x1 /CLONE=IMAGE:2367649 /UG=Hs.154145 hypothetical protein FLJ11585 AI743654 metallophosphoesterase 1 MPPE1 65258 NM_001242904 /// NM_023075 /// NM_138608 /// NR_040241 /// NR_040242 /// NR_040243 /// XM_006722340 /// XM_006722341 /// XM_006722342 /// XM_006722343 /// XM_006722344 /// XM_006722345 /// XM_006722346 /// XM_006722347 /// XM_006722348 /// XM_006722349 0006506 // GPI anchor biosynthetic process // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0070971 // endoplasmic reticulum exit site // inferred from sequence or structural similarity 0008081 // phosphoric diester hydrolase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0034235 // GPI anchor binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 27.70 35.65 1.91 0.10 0.15 -4.55
207334_s_at 207334_s_at NM_003242 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003242.1 /DEF=Homo sapiens transforming growth factor, beta receptor II (70-80kD) (TGFBR2), mRNA. /FEA=mRNA /GEN=TGFBR2 /PROD=transforming growth factor, beta receptor II(70-80kD) /DB_XREF=gi:4507468 /UG=Hs.82028 transforming growth factor, beta receptor II (70-80kD) /FL=gb:M85079.1 gb:NM_003242.1 NM_003242 transforming growth factor, beta receptor II (70/80kDa) TGFBR2 7048 NM_001024847 /// NM_003242 /// XM_006713316 0001568 // blood vessel development // traceable author statement /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002651 // positive regulation of tolerance induction to self antigen // inferred from sequence or structural similarity /// 0002663 // positive regulation of B cell tolerance induction // inferred from sequence or structural similarity /// 0002666 // positive regulation of T cell tolerance induction // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from direct assay /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred by curator /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0023014 // signal transduction by phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // inferred from sequence or structural similarity /// 0032924 // activin receptor signaling pathway // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from direct assay /// 0043011 // myeloid dendritic cell differentiation // inferred from sequence or structural similarity /// 0043415 // positive regulation of skeletal muscle tissue regeneration // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from sequence or structural similarity /// 0051138 // positive regulation of NK T cell differentiation // inferred from sequence or structural similarity /// 0051216 // cartilage development // inferred from electronic annotation /// 0060021 // palate development // inferred from sequence or structural similarity /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060433 // bronchus development // inferred from electronic annotation /// 0060434 // bronchus morphogenesis // inferred from electronic annotation /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060440 // trachea formation // inferred from electronic annotation /// 0060443 // mammary gland morphogenesis // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0070723 // response to cholesterol // inferred from direct assay /// 1990086 // lens fiber cell apoptotic process // inferred from electronic annotation /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0070022 // transforming growth factor beta receptor homodimeric complex // inferred by curator 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta-activated receptor activity // inferred by curator /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from direct assay /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from mutant phenotype /// 0005026 // transforming growth factor beta receptor activity, type II // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017002 // activin-activated receptor activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from direct assay /// 0034713 // type I transforming growth factor beta receptor binding // inferred from physical interaction /// 0034714 // type III transforming growth factor beta receptor binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // inferred from physical interaction -48.08 101.01 -1.91 0.10 0.15 -4.55
213083_at 213083_at AJ005866 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ005866.1 /DEF=Homo sapiens mRNA for putative Sqv-7-like protein, partial. /FEA=mRNA /PROD=Sqv-7-like protein /DB_XREF=gi:4008516 /UG=Hs.90078 nucleotide-sugar transporter similar to C. elegans sqv-7 AJ005866 solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 SLC35D2 11046 NM_001286990 /// NM_007001 /// NR_104627 /// XM_005251673 /// XM_005251674 /// XM_005251675 /// XM_005251676 /// XM_005251678 /// XM_006716939 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 1901264 // carbohydrate derivative transport // non-traceable author statement /// 1901679 // nucleotide transmembrane transport // non-traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // non-traceable author statement 29.70 100.03 1.90 0.10 0.15 -4.55
201887_at 201887_at NM_001560 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001560.1 /DEF=Homo sapiens interleukin 13 receptor, alpha 1 (IL13RA1), mRNA. /FEA=mRNA /GEN=IL13RA1 /PROD=interleukin 13 receptor, alpha 1 /DB_XREF=gi:4504646 /UG=Hs.285115 interleukin 13 receptor, alpha 1 /FL=gb:NM_001560.1 gb:U81379.3 NM_001560 interleukin 13 receptor, alpha 1 IL13RA1 3597 NM_001560 /// XM_005262411 0002639 // positive regulation of immunoglobulin production // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0035772 // interleukin-13-mediated signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005898 // interleukin-13 receptor complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016515 // interleukin-13 receptor activity // inferred from electronic annotation -41.42 303.46 -1.90 0.10 0.15 -4.55
200624_s_at 200624_s_at AA577695 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA577695 /FEA=EST /DB_XREF=gi:2355879 /DB_XREF=est:nn22h02.s1 /CLONE=IMAGE:1084659 /UG=Hs.78825 matrin 3 /FL=gb:NM_018834.1 gb:AB018266.1 AA577695 matrin 3 /// small nucleolar RNA host gene 4 (non-protein coding) MATR3 /// SNHG4 9782 /// 724102 NM_001194954 /// NM_001194955 /// NM_001194956 /// NM_001282278 /// NM_018834 /// NM_199189 /// NR_003141 /// NR_036536 0005634 // nucleus // inferred from direct assay /// 0005637 // nuclear inner membrane // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 83.50 514.77 1.90 0.10 0.15 -4.55
209524_at 209524_at AK001280 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001280.1 /DEF=Homo sapiens cDNA FLJ10418 fis, clone NT2RP1000130, moderately similar to HEPATOMA-DERIVED GROWTH FACTOR. /FEA=mRNA /DB_XREF=gi:7022435 /UG=Hs.127842 CGI-142 /FL=gb:AF151900.1 gb:AB029156.1 gb:NM_016073.1 AK001280 hepatoma-derived growth factor, related protein 3 HDGFRP3 50810 NM_016073 /// XM_006720554 0008283 // cell proliferation // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation -62.85 407.50 -1.90 0.10 0.15 -4.55
211257_x_at 211257_x_at AF273049 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF273049.1 /DEF=Homo sapiens CTCL tumor antigen se33-1 mRNA, complete cds. /FEA=mRNA /PROD=CTCL tumor antigen se33-1 /DB_XREF=gi:11385655 /UG=Hs.169984 nuclear protein /FL=gb:AF273049.1 AF273049 zinc finger protein 638 ZNF638 27332 NM_001014972 /// NM_001252612 /// NM_001252613 /// NM_014497 /// XM_005264261 /// XM_005264262 /// XM_005264263 /// XM_005264264 /// XM_006711989 /// XM_006711990 /// XR_244928 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -67.77 251.66 -1.90 0.10 0.15 -4.55
201731_s_at 201731_s_at NM_003292 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003292.1 /DEF=Homo sapiens translocated promoter region (to activated MET oncogene) (TPR), mRNA. /FEA=mRNA /GEN=TPR /PROD=translocated promoter region (to activated METoncogene) /DB_XREF=gi:4507658 /UG=Hs.169750 translocated promoter region (to activated MET oncogene) /FL=gb:NM_003292.1 NM_003292 translocated promoter region, nuclear basket protein TPR 7175 NM_003292 /// XM_005245471 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000189 // MAPK import into nucleus // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0000738 // DNA catabolic process, exonucleolytic // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006308 // DNA catabolic process // inferred from electronic annotation /// 0006404 // RNA import into nucleus // inferred from direct assay /// 0006405 // RNA export from nucleus // inferred from mutant phenotype /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006606 // protein import into nucleus // inferred from mutant phenotype /// 0006611 // protein export from nucleus // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006999 // nuclear pore organization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007094 // mitotic spindle assembly checkpoint // inferred from mutant phenotype /// 0008645 // hexose transport // traceable author statement /// 0010793 // regulation of mRNA export from nucleus // inferred from mutant phenotype /// 0010827 // regulation of glucose transport // traceable author statement /// 0010965 // regulation of mitotic sister chromatid separation // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031453 // positive regulation of heterochromatin assembly // inferred from mutant phenotype /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0031990 // mRNA export from nucleus in response to heat stress // inferred from direct assay /// 0034605 // cellular response to heat // inferred from direct assay /// 0035457 // cellular response to interferon-alpha // inferred from sequence or structural similarity /// 0042306 // regulation of protein import into nucleus // inferred from mutant phenotype /// 0042307 // positive regulation of protein import into nucleus // inferred from mutant phenotype /// 0043578 // nuclear matrix organization // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0045947 // negative regulation of translational initiation // inferred from mutant phenotype /// 0046825 // regulation of protein export from nucleus // inferred from mutant phenotype /// 0046827 // positive regulation of protein export from nucleus // inferred from sequence or structural similarity /// 0046832 // negative regulation of RNA export from nucleus // inferred from direct assay /// 0046832 // negative regulation of RNA export from nucleus // inferred from mutant phenotype /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051292 // nuclear pore complex assembly // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0070849 // response to epidermal growth factor // inferred from direct assay /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // inferred from mutant phenotype /// 0090316 // positive regulation of intracellular protein transport // inferred from mutant phenotype /// 1901673 // regulation of spindle assembly involved in mitosis // inferred from mutant phenotype 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0009318 // exodeoxyribonuclease VII complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0034399 // nuclear periphery // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from direct assay /// 0044615 // nuclear pore nuclear basket // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay /// 0004828 // serine-tRNA ligase activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from mutant phenotype /// 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008855 // exodeoxyribonuclease VII activity // inferred from electronic annotation /// 0015631 // tubulin binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043495 // protein anchor // inferred from mutant phenotype /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051019 // mitogen-activated protein kinase binding // inferred from direct assay /// 0070840 // dynein complex binding // inferred from direct assay -58.90 412.05 -1.90 0.10 0.15 -4.55
222201_s_at 222201_s_at AB037736 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB037736.1 /DEF=Homo sapiens mRNA for KIAA1315 protein, partial cds. /FEA=mRNA /GEN=KIAA1315 /PROD=KIAA1315 protein /DB_XREF=gi:7243010 /UG=Hs.122843 CASP8 associated protein 2 AB037736 caspase 8 associated protein 2 CASP8AP2 9994 NM_001137667 /// NM_001137668 /// NM_012115 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from sequence or structural similarity /// 0036337 // Fas signaling pathway // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0097190 // apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005123 // death receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from sequence or structural similarity /// 0016505 // peptidase activator activity involved in apoptotic process // inferred from sequence or structural similarity /// 0032184 // SUMO polymer binding // inferred from direct assay 32.70 93.85 1.90 0.10 0.15 -4.55
204117_at 204117_at NM_002726 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002726.1 /DEF=Homo sapiens prolyl endopeptidase (PREP), mRNA. /FEA=mRNA /GEN=PREP /PROD=prolyl endopeptidase /DB_XREF=gi:4506042 /UG=Hs.86978 prolyl endopeptidase /FL=gb:AB028867.1 gb:NM_002726.1 gb:AB020018.1 gb:D21102.1 NM_002726 prolyl endopeptidase PREP 5550 NM_002726 /// XM_005267044 0006508 // proteolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070008 // serine-type exopeptidase activity // inferred from electronic annotation 31.65 127.28 1.90 0.10 0.15 -4.55
202788_at 202788_at NM_004635 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004635.1 /DEF=Homo sapiens mitogen-activated protein kinase-activated protein kinase 3 (MAPKAPK3), mRNA. /FEA=mRNA /GEN=MAPKAPK3 /PROD=mitogen-activated protein kinase-activatedprotein kinase 3 /DB_XREF=gi:4758699 /UG=Hs.227789 mitogen-activated protein kinase-activated protein kinase 3 /FL=gb:U09578.1 gb:U43784.1 gb:BC001662.1 gb:NM_004635.1 NM_004635 mitogen-activated protein kinase-activated protein kinase 3 MAPKAPK3 7867 NM_001243925 /// NM_001243926 /// NM_004635 0000187 // activation of MAPK activity // traceable author statement /// 0002224 // toll-like receptor signaling pathway // inferred from sequence or structural similarity /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from sequence or structural similarity /// 0034097 // response to cytokine // inferred from direct assay /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0044351 // macropinocytosis // inferred from sequence or structural similarity /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004708 // MAP kinase kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 32.12 59.99 1.90 0.10 0.15 -4.55
200008_s_at 200008_s_at D13988 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D13988.1 /DEF=Human rab GDI mRNA, complete cds. /FEA=mRNA /PROD=human rab GDI /DB_XREF=gi:285974 /UG=Hs.56845 GDP dissociation inhibitor 2 /FL=gb:BC005145.1 gb:D13988.1 gb:NM_001494.2 D13988 GDP dissociation inhibitor 2 GDI2 2665 NM_001115156 /// NM_001494 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -122.75 622.70 -1.90 0.10 0.15 -4.55
212720_at 212720_at AI670847 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI670847 /FEA=EST /DB_XREF=gi:4850578 /DB_XREF=est:wa04h10.x1 /CLONE=IMAGE:2297155 /UG=Hs.5324 hypothetical protein AI670847 poly(A) polymerase alpha PAPOLA 10914 NM_001252006 /// NM_001252007 /// NM_001293627 /// NM_001293628 /// NM_001293632 /// NM_032632 /// XM_005267280 /// XM_005267281 /// XM_005267282 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006378 // mRNA polyadenylation // non-traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0043631 // RNA polyadenylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // not recorded /// 0004652 // polynucleotide adenylyltransferase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -37.48 115.76 -1.90 0.10 0.15 -4.55
212270_x_at 212270_x_at BG168283 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG168283 /FEA=EST /DB_XREF=gi:12674986 /DB_XREF=est:602340822F1 /CLONE=IMAGE:4448789 /UG=Hs.82202 ribosomal protein L17 BG168283 chromosome 18 open reading frame 32 /// ribosomal protein L17 /// RPL17-C18orf32 readthrough /// small nucleolar RNA, C/D box 58A /// small nucleolar RNA, C/D box 58B /// small nucleolar RNA, C/D box 58C C18orf32 /// RPL17 /// RPL17-C18orf32 /// SNORD58A /// SNORD58B /// SNORD58C 6139 /// 26790 /// 26791 /// 497661 /// 100124516 /// 100526842 NM_000985 /// NM_001035005 /// NM_001035006 /// NM_001199340 /// NM_001199341 /// NM_001199342 /// NM_001199343 /// NM_001199344 /// NM_001199345 /// NM_001199346 /// NM_001199355 /// NM_001199356 /// NR_002571 /// NR_002572 /// NR_003701 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007165 // signal transduction // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0044822 // poly(A) RNA binding // inferred from direct assay -505.53 2851.24 -1.89 0.10 0.15 -4.55
218198_at 218198_at NM_018180 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018180.1 /DEF=Homo sapiens hypothetical protein FLJ10889 (FLJ10889), mRNA. /FEA=mRNA /GEN=FLJ10889 /PROD=hypothetical protein FLJ10694 /DB_XREF=gi:9506626 /UG=Hs.171835 hypothetical protein FLJ10889 /FL=gb:BC002473.1 gb:NM_018180.1 NM_018180 DEAH (Asp-Glu-Ala-His) box polypeptide 32 DHX32 55760 NM_018180 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -33.25 168.85 -1.89 0.10 0.15 -4.55
211061_s_at 211061_s_at BC006390 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006390.1 /DEF=Homo sapiens, mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, clone MGC:12650, mRNA, complete cds. /FEA=mRNA /PROD=mannosyl (alpha-1,6-)-glycoproteinbeta-1,2-N-acetylglucosaminyltransferase /DB_XREF=gi:13623554 /FL=gb:BC006390.1 BC006390 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase MGAT2 4247 NM_001015883 /// NM_002408 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // traceable author statement /// 0009311 // oligosaccharide metabolic process // traceable author statement /// 0009312 // oligosaccharide biosynthetic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0008455 // alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 42.60 270.82 1.89 0.10 0.15 -4.55
220368_s_at 220368_s_at NM_017936 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017936.1 /DEF=Homo sapiens hypothetical protein FLJ20707 (FLJ20707), mRNA. /FEA=mRNA /GEN=FLJ20707 /PROD=hypothetical protein FLJ20707 /DB_XREF=gi:8923637 /UG=Hs.109441 hypothetical protein FLJ20707 /FL=gb:NM_017936.1 NM_017936 SMEK homolog 1, suppressor of mek1 (Dictyostelium) SMEK1 55671 NM_001284280 /// NM_001284281 /// NM_017936 /// NM_032560 /// XM_005267842 /// XM_006720194 /// XR_245702 /// XR_245703 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0045722 // positive regulation of gluconeogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030289 // protein phosphatase 4 complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -26.92 78.74 -1.89 0.10 0.15 -4.55
216624_s_at 216624_s_at Z69744 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z69744 /DEF=H.sapiens ALL-1 gene exon 1 (and joined coding region) /FEA=CDS /DB_XREF=gi:1490270 /UG=Hs.199160 myeloidlymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog) Z69744 lysine (K)-specific methyltransferase 2A KMT2A 4297 NM_001197104 /// NM_005933 /// NM_024891 /// XM_006718839 /// XM_006718840 0006306 // DNA methylation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0032411 // positive regulation of transporter activity // inferred from mutant phenotype /// 0035162 // embryonic hemopoiesis // traceable author statement /// 0043984 // histone H4-K16 acetylation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051568 // histone H3-K4 methylation // inferred from direct assay /// 0051568 // histone H3-K4 methylation // inferred from mutant phenotype /// 0051569 // regulation of histone H3-K4 methylation // inferred from electronic annotation /// 0080182 // histone H3-K4 trimethylation // inferred from direct assay /// 2001040 // positive regulation of cellular response to drug // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0035097 // histone methyltransferase complex // inferred from direct assay /// 0071339 // MLL1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003680 // AT DNA binding // non-traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from direct assay /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from mutant phenotype /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0045322 // unmethylated CpG binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070577 // lysine-acetylated histone binding // inferred from direct assay -43.90 56.65 -1.89 0.10 0.15 -4.55
202552_s_at 202552_s_at NM_016441 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016441.1 /DEF=Homo sapiens cysteine-rich motor neuron 1 (CRIM1), mRNA. /FEA=mRNA /GEN=CRIM1 /PROD=cysteine-rich motor neuron 1 /DB_XREF=gi:10092638 /UG=Hs.19280 cysteine-rich motor neuron 1 /FL=gb:NM_016441.1 gb:AF167706.1 NM_016441 cysteine rich transmembrane BMP regulator 1 (chordin-like) /// uncharacterized LOC101929500 CRIM1 /// LOC101929500 51232 /// 101929500 NM_016441 /// XM_005264357 /// XM_005264358 /// XR_244983 /// XR_249109 /// XR_251054 /// XR_426983 0001558 // regulation of cell growth // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005010 // insulin-like growth factor-activated receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from direct assay -100.97 624.66 -1.89 0.10 0.15 -4.55
200890_s_at 200890_s_at AW006345 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW006345 /FEA=EST /DB_XREF=gi:5855123 /DB_XREF=est:wt04d05.x1 /CLONE=IMAGE:2506473 /UG=Hs.250773 signal sequence receptor, alpha (translocon-associated protein alpha) /FL=gb:AF156965.1 gb:NM_003144.2 AW006345 signal sequence receptor, alpha SSR1 6745 NM_001292008 /// NM_003144 /// NR_120448 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 37.05 129.57 1.89 0.10 0.15 -4.55
221002_s_at 221002_s_at NM_030927 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030927.1 /DEF=Homo sapiens hypothetical protein MGC11352 (MGC11352), mRNA. /FEA=mRNA /GEN=MGC11352 /PROD=hypothetical protein MGC11352 /DB_XREF=gi:13569888 /FL=gb:NM_030927.1 NM_030927 tetraspanin 14 TSPAN14 81619 NM_001128309 /// NM_030927 /// XM_005270191 /// XM_005270192 /// XM_006717990 /// XM_006717991 /// XM_006717992 0045747 // positive regulation of Notch signaling pathway // inferred from mutant phenotype /// 0051604 // protein maturation // inferred from mutant phenotype /// 0090002 // establishment of protein localization to plasma membrane // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0019899 // enzyme binding // inferred from physical interaction 77.15 367.05 1.89 0.10 0.15 -4.55
203353_s_at 203353_s_at NM_015846 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015846.1 /DEF=Homo sapiens methyl-CpG binding domain protein 1 (MBD1), transcript variant 1, mRNA. /FEA=mRNA /GEN=MBD1 /PROD=methyl-CpG binding domain protein 1, isoform 1 /DB_XREF=gi:7710138 /UG=Hs.6211 methyl-CpG binding domain protein 1 /FL=gb:AF078830.1 gb:NM_015846.1 NM_015846 methyl-CpG binding domain protein 1 MBD1 4152 NM_001204136 /// NM_001204137 /// NM_001204138 /// NM_001204139 /// NM_001204140 /// NM_001204141 /// NM_001204142 /// NM_001204143 /// NM_001204151 /// NM_002384 /// NM_015844 /// NM_015845 /// NM_015846 /// NM_015847 /// XM_005258262 /// XM_005258264 /// XM_005258265 /// XM_005258268 /// XM_005258271 /// XM_005258272 /// XM_005258274 /// XM_006722452 /// XM_006722453 /// XM_006722454 /// XM_006722455 /// XM_006722456 /// XM_006722457 /// XM_006722458 /// XM_006722459 /// XM_006722460 /// XM_006722461 /// XM_006722462 /// XM_006722463 /// XM_006722464 /// XM_006722465 /// XM_006722466 /// XM_006722467 /// XM_006722468 /// XM_006722469 /// XM_006722470 /// XM_006722471 /// XM_006722472 /// XM_006722473 /// XM_006722474 /// XM_006722475 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0000785 // chromatin // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008327 // methyl-CpG binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 32.20 190.90 1.89 0.10 0.15 -4.55
200913_at 200913_at NM_002707 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002707.1 /DEF=Homo sapiens protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform (PPM1G), mRNA. /FEA=mRNA /GEN=PPM1G /PROD=protein phosphatase 1G (formerly 2C),magnesium-dependent, gamma isoform /DB_XREF=gi:4505998 /UG=Hs.17883 protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform /FL=gb:BC000057.1 gb:NM_002707.1 NM_002707 protein phosphatase, Mg2+/Mn2+ dependent, 1G PPM1G 5496 NM_177983 0006470 // protein dephosphorylation // traceable author statement /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0035970 // peptidyl-threonine dephosphorylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -23.30 141.57 -1.89 0.10 0.15 -4.55
210183_x_at 210183_x_at AF112222 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF112222.1 /DEF=Homo sapiens nuclear protein SDK3 mRNA, complete cds. /FEA=mRNA /PROD=nuclear protein SDK3 /DB_XREF=gi:6563229 /UG=Hs.44499 pinin, desmosome associated protein /FL=gb:AF112222.1 AF112222 pinin, desmosome associated protein PNN 5411 NM_002687 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005882 // intermediate filament // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030057 // desmosome // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005198 // structural molecule activity // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -251.63 1302.34 -1.89 0.10 0.15 -4.55
221918_at 221918_at AI742210 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI742210 /FEA=EST /DB_XREF=gi:5110498 /DB_XREF=est:wg39c02.x1 /CLONE=IMAGE:2367458 /UG=Hs.183302 ESTs AI742210 cyclin-dependent kinase 17 CDK17 5128 NM_001170464 /// NM_002595 /// XM_006719444 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 129.00 656.98 1.88 0.10 0.15 -4.55
201805_at 201805_at NM_002733 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002733.1 /DEF=Homo sapiens protein kinase, AMP-activated, gamma 1 non-catalytic subunit (PRKAG1), mRNA. /FEA=mRNA /GEN=PRKAG1 /PROD=protein kinase, AMP-activated, gamma 1non-catalytic subunit /DB_XREF=gi:4506060 /UG=Hs.3136 protein kinase, AMP-activated, gamma 1 non-catalytic subunit /FL=gb:BC000358.1 gb:U42412.1 gb:NM_002733.1 NM_002733 protein kinase, AMP-activated, gamma 1 non-catalytic subunit PRKAG1 5571 NM_001206709 /// NM_001206710 /// NM_002733 /// NM_212461 /// XM_005269019 /// XM_005269020 /// XM_006719499 /// XM_006719500 0006110 // regulation of glycolytic process // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007283 // spermatogenesis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from sequence or structural similarity /// 0004691 // cAMP-dependent protein kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008603 // cAMP-dependent protein kinase regulator activity // traceable author statement /// 0016208 // AMP binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from direct assay /// 0030554 // adenyl nucleotide binding // inferred from electronic annotation /// 0043531 // ADP binding // inferred from sequence or structural similarity -37.90 186.10 -1.88 0.10 0.15 -4.55
215832_x_at 215832_x_at AV722190 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV722190 /FEA=EST /DB_XREF=gi:10824430 /DB_XREF=est:AV722190 /CLONE=HTBAMF09 /UG=Hs.7885 phosphatidylinositol binding clathrin assembly protein AV722190 phosphatidylinositol binding clathrin assembly protein PICALM 8301 NM_001008660 /// NM_001206946 /// NM_001206947 /// NM_007166 /// XM_005274322 /// XM_005274323 /// XM_005274324 /// XM_005274325 /// XM_005274326 /// XM_005274327 /// XM_005274328 /// XM_005274329 /// XM_005274330 /// XM_005274331 /// XM_005274332 /// XM_005274333 /// XM_005274334 /// XM_005274335 /// XM_005274336 /// XM_005274337 /// XM_005274338 /// XM_005274340 /// XM_006718699 /// XM_006718700 /// XM_006718701 /// XM_006718702 0006461 // protein complex assembly // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0016188 // synaptic vesicle maturation // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from mutant phenotype /// 0031623 // receptor internalization // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from direct assay /// 0035459 // cargo loading into vesicle // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048261 // negative regulation of receptor-mediated endocytosis // inferred from direct assay /// 0048268 // clathrin coat assembly // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from mutant phenotype /// 0072583 // clathrin-mediated endocytosis // inferred from mutant phenotype /// 0097459 // iron ion import into cell // inferred from mutant phenotype /// 1901216 // positive regulation of neuron death // inferred from mutant phenotype /// 1902004 // positive regulation of beta-amyloid formation // inferred from mutant phenotype /// 1902959 // regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process // inferred from mutant phenotype /// 1902961 // positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process // inferred from sequence or structural similarity /// 1902963 // negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005905 // coated pit // inferred from direct assay /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // inferred from direct assay /// 0030132 // clathrin coat of coated pit // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from sequence or structural similarity /// 0042734 // presynaptic membrane // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0097418 // neurofibrillary tangle // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // 1-phosphatidylinositol binding // inferred from sequence or structural similarity /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // inferred from physical interaction /// 0030276 // clathrin binding // inferred from sequence or structural similarity /// 0032050 // clathrin heavy chain binding // inferred from direct assay /// 0035615 // clathrin adaptor activity // inferred from mutant phenotype 137.90 326.02 1.88 0.10 0.15 -4.55
218210_at 218210_at NM_024619 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024619.1 /DEF=Homo sapiens hypothetical protein FLJ12171 (FLJ12171), mRNA. /FEA=mRNA /GEN=FLJ12171 /PROD=hypothetical protein FLJ12171 /DB_XREF=gi:13375839 /UG=Hs.31431 hypothetical protein FLJ12171 /FL=gb:AL136631.1 gb:NM_024619.1 NM_024619 fructosamine 3 kinase related protein FN3KRP 79672 NM_024619 /// NR_046408 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 30.77 118.54 1.88 0.10 0.15 -4.55
208875_s_at 208875_s_at BF796470 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF796470 /FEA=EST /DB_XREF=gi:12101524 /DB_XREF=est:602259926F1 /CLONE=IMAGE:4342999 /UG=Hs.284275 Homo sapiens PAK2 mRNA, complete cds /FL=gb:AF092132.1 BF796470 p21 protein (Cdc42/Rac)-activated kinase 2 PAK2 5062 NM_002577 0000278 // mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0031295 // T cell costimulation // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001271 // negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030296 // protein tyrosine kinase activator activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction -59.58 188.54 -1.88 0.10 0.15 -4.55
201086_x_at 201086_x_at NM_003103 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003103.1 /DEF=Homo sapiens SON DNA binding protein (SON), mRNA. /FEA=mRNA /GEN=SON /PROD=SON DNA binding protein /DB_XREF=gi:4507152 /UG=Hs.92909 SON DNA binding protein /FL=gb:NM_003103.1 NM_003103 SON DNA binding protein SON 6651 NM_001291411 /// NM_001291412 /// NM_003103 /// NM_032195 /// NM_138925 /// NM_138927 /// NR_103796 /// NR_103797 /// NR_103798 /// XM_006724043 /// XM_006724044 /// XM_006724045 /// XR_430355 0000226 // microtubule cytoskeleton organization // inferred from mutant phenotype /// 0000910 // cytokinesis // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043484 // regulation of RNA splicing // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0003676 // nucleic acid binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // inferred from electronic annotation 98.98 548.11 1.88 0.10 0.15 -4.55
217738_at 217738_at BF575514 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF575514 /FEA=EST /DB_XREF=gi:11649318 /DB_XREF=est:602133090F1 /CLONE=IMAGE:4288079 /UG=Hs.239138 pre-B-cell colony-enhancing factor /FL=gb:U02020.1 gb:NM_005746.1 BF575514 nicotinamide phosphoribosyltransferase NAMPT 10135 NM_005746 /// NM_182790 /// XM_005250100 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006769 // nicotinamide metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // inferred from direct assay /// 0060612 // adipose tissue development // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0047280 // nicotinamide phosphoribosyltransferase activity // inferred from electronic annotation -33.38 293.11 -1.88 0.10 0.15 -4.55
203736_s_at 203736_s_at NM_003622 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003622.1 /DEF=Homo sapiens PTPRF interacting protein, binding protein 1 (liprin beta 1) (PPFIBP1), mRNA. /FEA=mRNA /GEN=PPFIBP1 /PROD=PTPRF interacting protein, binding protein 1(liprin beta 1) /DB_XREF=gi:4505986 /UG=Hs.133207 PTPRF interacting protein, binding protein 1 (liprin beta 1) /FL=gb:AF034802.1 gb:NM_003622.1 NM_003622 PTPRF interacting protein, binding protein 1 (liprin beta 1) PPFIBP1 8496 NM_001198915 /// NM_001198916 /// NM_003622 /// NM_177444 /// XM_005253505 /// XM_005253506 /// XM_005253507 /// XM_005253508 /// XM_005253509 /// XM_005253510 /// XM_005253511 /// XM_005253514 /// XM_005253515 /// XM_005253516 /// XM_006719159 /// XM_006719160 /// XM_006719161 0007155 // cell adhesion // traceable author statement /// 0015074 // DNA integration // inferred from electronic annotation 0005886 // plasma membrane // non-traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008907 // integrase activity // inferred from electronic annotation -23.60 78.08 -1.87 0.10 0.15 -4.55
202822_at 202822_at BF221852 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF221852 /FEA=EST /DB_XREF=gi:11129029 /DB_XREF=est:7p37f11.x1 /CLONE=IMAGE:3648141 /UG=Hs.180398 LIM domain-containing preferred translocation partner in lipoma /FL=gb:NM_005578.1 BF221852 LIM domain containing preferred translocation partner in lipoma LPP 4026 NM_001167671 /// NM_001167672 /// NM_005578 /// XM_005247444 /// XM_005247445 /// XM_005247446 /// XM_005247447 /// XM_005247448 /// XM_005247450 /// XM_005247451 /// XM_005247453 /// XM_006713637 0007155 // cell adhesion // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 68.55 224.00 1.87 0.10 0.15 -4.55
201336_at 201336_at BC003570 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003570.1 /DEF=Homo sapiens, Similar to vesicle-associated membrane protein 3, clone MGC:2110, mRNA, complete cds. /FEA=mRNA /PROD=Similar to vesicle-associated membrane protein3 /DB_XREF=gi:13097737 /UG=Hs.66708 vesicle-associated membrane protein 3 (cellubrevin) /FL=gb:BC003570.1 gb:NM_004781.2 BC003570 vesicle-associated membrane protein 3 VAMP3 9341 NM_004781 0001921 // positive regulation of receptor recycling // inferred from sequence or structural similarity /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // traceable author statement /// 0006904 // vesicle docking involved in exocytosis // traceable author statement /// 0006906 // vesicle fusion // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay /// 0043001 // Golgi to plasma membrane protein transport // inferred from electronic annotation /// 0061025 // membrane fusion // traceable author statement 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030141 // secretory granule // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043229 // intracellular organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay 0000149 // SNARE binding // not recorded /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from electronic annotation -43.82 798.59 -1.87 0.10 0.15 -4.55
210514_x_at 210514_x_at AF226990 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF226990.2 /DEF=Homo sapiens MHC class I antigen (HLA-G) mRNA, HLA-G1 allele, complete cds. /FEA=mRNA /GEN=HLA-G /PROD=MHC class I antigen /DB_XREF=gi:7245285 /UG=Hs.73885 HLA-G histocompatibility antigen, class I, G /FL=gb:M90683.1 gb:M32800.1 gb:NM_002127.1 gb:AF226990.2 AF226990 major histocompatibility complex, class I, G HLA-G 3135 NM_002127 /// XM_006715080 /// XM_006725041 /// XM_006725700 /// XM_006725909 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002666 // positive regulation of T cell tolerance induction // inferred from mutant phenotype /// 0002767 // immune response-inhibiting cell surface receptor signaling pathway // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0006968 // cellular defense response // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0042130 // negative regulation of T cell proliferation // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045591 // positive regulation of regulatory T cell differentiation // inferred from mutant phenotype /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 2001199 // negative regulation of dendritic cell differentiation // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042803 // protein homodimerization activity // non-traceable author statement -70.57 237.79 -1.87 0.10 0.15 -4.55
202379_s_at 202379_s_at AI361805 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI361805 /FEA=EST /DB_XREF=gi:4113426 /DB_XREF=est:qz24g07.x1 /CLONE=IMAGE:2027868 /UG=Hs.241493 natural killer-tumor recognition sequence /FL=gb:L04288.2 gb:NM_005385.2 AI361805 natural killer cell triggering receptor NKTR 4820 NM_001012651 /// NM_005385 /// XM_005265173 /// XM_005265174 /// XM_005265176 /// XM_005265178 /// XM_006713171 /// XM_006713172 /// XM_006713173 /// XM_006713174 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016018 // cyclosporin A binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 63.62 179.56 1.87 0.10 0.15 -4.55
204785_x_at 204785_x_at NM_000874 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000874.1 /DEF=Homo sapiens interferon (alpha, beta and omega) receptor 2 (IFNAR2), mRNA. /FEA=mRNA /GEN=IFNAR2 /PROD=interferon (alpha, beta and omega) receptor 2 /DB_XREF=gi:4504600 /UG=Hs.86958 interferon (alpha, beta and omega) receptor 2 /FL=gb:NM_000874.1 gb:L41944.1 NM_000874 interferon (alpha, beta and omega) receptor 2 IFNAR2 3455 NM_000874 /// NM_001289125 /// NM_001289126 /// NM_001289128 /// NM_207584 /// NM_207585 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007259 // JAK-STAT cascade // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0035455 // response to interferon-alpha // inferred from direct assay /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060338 // regulation of type I interferon-mediated signaling pathway // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004905 // type I interferon receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019962 // type I interferon binding // inferred from physical interaction -39.70 139.45 -1.87 0.10 0.15 -4.55
200922_at 200922_at NM_006801 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006801.1 /DEF=Homo sapiens KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 (KDELR1), mRNA. /FEA=mRNA /GEN=KDELR1 /PROD=KDEL receptor 1 /DB_XREF=gi:5803047 /UG=Hs.78040 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 /FL=gb:NM_006801.1 NM_006801 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 KDELR1 10945 NM_006801 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation 0005046 // KDEL sequence binding // traceable author statement /// 0046923 // ER retention sequence binding // inferred from electronic annotation 36.05 216.55 1.87 0.10 0.15 -4.55
212687_at 212687_at AL110164 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL110164.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586I0324 (from clone DKFZp586I0324). /FEA=mRNA /DB_XREF=gi:5817069 /UG=Hs.193700 Homo sapiens mRNA; cDNA DKFZp586I0324 (from clone DKFZp586I0324) AL110164 LIM and senescent cell antigen-like domains 1 /// LIM and senescent cell antigen-like domains 3 /// LIM and senescent cell antigen-like domains 3-like LIMS1 /// LIMS3 /// LIMS3L 3987 /// 96626 /// 100288695 NM_001193482 /// NM_001193483 /// NM_001193484 /// NM_001193485 /// NM_001193488 /// NM_001205288 /// NM_004987 /// NM_033514 /// NR_027467 /// NR_038099 /// XM_005263563 /// XM_005263946 /// XM_005263947 /// XM_005263948 /// XM_005263949 /// XM_005263950 /// XM_005263951 /// XM_006712167 /// XM_006712524 /// XR_244813 0007569 // cell aging // traceable author statement /// 0034329 // cell junction assembly // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -169.73 1142.39 -1.87 0.10 0.15 -4.55
218003_s_at 218003_s_at NM_002013 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002013.1 /DEF=Homo sapiens FK506-binding protein 3 (25kD) (FKBP3), mRNA. /FEA=mRNA /GEN=FKBP3 /PROD=FK506-binding protein 3 (25kD) /DB_XREF=gi:4503726 /UG=Hs.306024 FK506-binding protein 3 (25kD) /FL=gb:M96256.1 gb:M90820.1 gb:M90309.1 gb:NM_002013.1 NM_002013 FK506 binding protein 3, 25kDa FKBP3 2287 NM_002013 0000413 // protein peptidyl-prolyl isomerization // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0018208 // peptidyl-proline modification // /// 0061077 // chaperone-mediated protein folding // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005528 // FK506 binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 42.25 249.05 1.87 0.10 0.15 -4.55
213001_at 213001_at AF007150 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF007150.1 /DEF=Homo sapiens clone 23767 and 23782 mRNA sequences. /FEA=mRNA /DB_XREF=gi:2852628 /UG=Hs.8025 Homo sapiens clone 23767 and 23782 mRNA sequences AF007150 angiopoietin-like 2 ANGPTL2 23452 NM_012098 /// XM_006717030 0007275 // multicellular organismal development // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement 25.63 132.74 1.87 0.10 0.15 -4.55
200668_s_at 200668_s_at BC003395 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003395.1 /DEF=Homo sapiens, ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC45), clone MGC:5416, mRNA, complete cds. /FEA=mRNA /PROD=ubiquitin-conjugating enzyme E2D 3 (homologousto yeast UBC45) /DB_XREF=gi:13097281 /UG=Hs.118797 ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC45) /FL=gb:U39318.1 gb:BC003395.1 gb:NM_003340.1 BC003395 ubiquitin-conjugating enzyme E2D 3 UBE2D3 7323 NM_003340 /// NM_181886 /// NM_181887 /// NM_181888 /// NM_181889 /// NM_181890 /// NM_181891 /// NM_181892 /// NM_181893 /// XM_005263200 /// XM_005263205 /// XM_006714297 /// XM_006714298 /// XM_006714299 /// XM_006714300 /// XM_006714301 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000209 // protein polyubiquitination // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0030509 // BMP signaling pathway // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -125.15 987.60 -1.87 0.10 0.15 -4.55
202329_at 202329_at NM_004383 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004383.1 /DEF=Homo sapiens c-src tyrosine kinase (CSK), mRNA. /FEA=mRNA /GEN=CSK /PROD=c-src tyrosine kinase /DB_XREF=gi:4758077 /UG=Hs.77793 c-src tyrosine kinase /FL=gb:NM_004383.1 NM_004383 c-src tyrosine kinase CSK 1445 NM_001127190 /// NM_004383 /// XM_005254165 0002376 // immune system process // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010989 // negative regulation of low-density lipoprotein particle clearance // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0033673 // negative regulation of kinase activity // inferred from electronic annotation /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0042997 // negative regulation of Golgi to plasma membrane protein transport // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0050765 // negative regulation of phagocytosis // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0060368 // regulation of Fc receptor mediated stimulatory signaling pathway // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from physical interaction /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0070064 // proline-rich region binding // inferred from electronic annotation -48.18 256.76 -1.87 0.10 0.15 -4.55
213864_s_at 213864_s_at AI985751 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI985751 /FEA=EST /DB_XREF=gi:5813028 /DB_XREF=est:wr76h07.x1 /CLONE=IMAGE:2493661 /UG=Hs.179662 nucleosome assembly protein 1-like 1 AI985751 nucleosome assembly protein 1-like 1 NAP1L1 4673 NM_004537 /// NM_139207 /// XM_005268895 /// XM_005268896 /// XM_006719422 /// XM_006719423 /// XM_006719424 /// XM_006719425 /// XR_245930 /// XR_245931 /// XR_245932 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -88.77 1358.39 -1.87 0.10 0.15 -4.55
200052_s_at 200052_s_at NM_004515 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004515.1 /DEF=Homo sapiens interleukin enhancer binding factor 2, 45kD (ILF2), mRNA. /FEA=mRNA /GEN=ILF2 /PROD=interleukin enhancer binding factor 2, 45kD /DB_XREF=gi:4758601 /UG=Hs.75117 interleukin enhancer binding factor 2, 45kD /FL=gb:BC000382.1 gb:NM_004515.1 gb:U10323.1 NM_004515 interleukin enhancer binding factor 2 ILF2 3608 NM_001267809 /// NM_004515 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 92.50 527.88 1.87 0.10 0.15 -4.55
209383_at 209383_at BC003637 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003637.1 /DEF=Homo sapiens, Similar to DNA-damage-inducible transcript 3, clone MGC:4154, mRNA, complete cds. /FEA=mRNA /PROD=Similar to DNA-damage-inducible transcript 3 /DB_XREF=gi:13177717 /UG=Hs.279946 methionine-tRNA synthetase /FL=gb:BC003637.1 gb:NM_004083.1 BC003637 DNA-damage-inducible transcript 3 DDIT3 1649 NM_001195053 /// NM_001195054 /// NM_001195055 /// NM_001195056 /// NM_001195057 /// NM_004083 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001955 // blood vessel maturation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // traceable author statement /// 0006983 // ER overload response // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032757 // positive regulation of interleukin-8 production // inferred from mutant phenotype /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0042594 // response to starvation // inferred from electronic annotation /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043620 // regulation of DNA-templated transcription in response to stress // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044324 // regulation of transcription involved in anterior/posterior axis specification // inferred from sequence or structural similarity /// 0045454 // cell redox homeostasis // inferred from direct assay /// 0045662 // negative regulation of myoblast differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from direct assay /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 2000016 // negative regulation of determination of dorsal identity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -70.15 136.60 -1.86 0.10 0.16 -4.55
200882_s_at 200882_s_at NM_002810 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002810.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 (PSMD4), mRNA. /FEA=mRNA /GEN=PSMD4 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 4 /DB_XREF=gi:5292160 /UG=Hs.148495 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 /FL=gb:BC002365.1 gb:U24704.1 gb:NM_002810.1 NM_002810 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 PSMD4 5710 NM_002810 /// NM_153822 /// XM_005245354 /// XM_006711464 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008540 // proteasome regulatory particle, base subcomplex // inferred from electronic annotation /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -72.45 328.43 -1.86 0.10 0.16 -4.55
214687_x_at 214687_x_at AK026577 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026577.1 /DEF=Homo sapiens cDNA: FLJ22924 fis, clone KAT06977, highly similar to HSALDAR Human fibroblast mRNA for aldolase A. /FEA=mRNA /DB_XREF=gi:10439461 /UG=Hs.273415 aldolase A, fructose-bisphosphate AK026577 aldolase A, fructose-bisphosphate ALDOA 226 NM_000034 /// NM_001127617 /// NM_001243175 /// NM_001243177 /// NM_184041 /// NM_184043 /// XM_006721109 0002576 // platelet degranulation // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006000 // fructose metabolic process // inferred from mutant phenotype /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // inferred from mutant phenotype /// 0006096 // glycolytic process // traceable author statement /// 0006754 // ATP biosynthetic process // inferred from mutant phenotype /// 0006941 // striated muscle contraction // inferred from mutant phenotype /// 0007015 // actin filament organization // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008360 // regulation of cell shape // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0046716 // muscle cell cellular homeostasis // inferred from mutant phenotype /// 0051289 // protein homotetramerization // inferred from sequence or structural similarity 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031430 // M band // inferred from electronic annotation /// 0031674 // I band // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004332 // fructose-bisphosphate aldolase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from direct assay /// 0015631 // tubulin binding // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0042802 // identical protein binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070061 // fructose binding // inferred from direct assay -384.40 1507.97 -1.86 0.10 0.16 -4.55
200731_s_at 200731_s_at AW165960 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW165960 /FEA=EST /DB_XREF=gi:6397485 /DB_XREF=est:xf43a12.x1 /CLONE=IMAGE:2620798 /UG=Hs.227777 protein tyrosine phosphatase type IVA, member 1 /FL=gb:U48296.1 gb:NM_003463.1 AW165960 protein tyrosine phosphatase type IVA, member 1 PTP4A1 7803 NM_003463 /// XM_006715563 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // non-traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 33.42 215.49 1.86 0.10 0.16 -4.55
201901_s_at 201901_s_at Z14077 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z14077.1 /DEF=H.sapiens mRNA for YY1NF-E1 protein. /FEA=mRNA /PROD=YY1 NF-E1 /DB_XREF=gi:38010 /UG=Hs.97496 YY1 transcription factor /FL=gb:M77698.1 gb:M76541.1 gb:NM_003403.2 Z14077 YY1 transcription factor YY1 7528 NM_003403 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006403 // RNA localization // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010225 // response to UV-C // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034644 // cellular response to UV // inferred from mutant phenotype /// 0034696 // response to prostaglandin F // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0031011 // Ino80 complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from electronic annotation 0000400 // four-way junction DNA binding // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -49.95 274.95 -1.86 0.10 0.16 -4.55
208633_s_at 208633_s_at W61052 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W61052 /FEA=EST /DB_XREF=gi:1367812 /DB_XREF=est:zd29g11.r1 /CLONE=IMAGE:342116 /UG=Hs.108258 actin binding protein; macrophin (microfilament and actin filament cross-linker protein) /FL=gb:AB029290.1 W61052 microtubule-actin crosslinking factor 1 MACF1 23499 NM_012090 /// NM_033044 /// XM_005270694 /// XM_005270695 /// XM_005270696 /// XM_005270697 /// XM_005270698 /// XM_005270700 /// XM_006710519 /// XM_006710520 /// XM_006710521 /// XM_006710522 /// XM_006710523 /// XM_006710524 /// XM_006710525 /// XM_006710526 /// XM_006710527 /// XM_006710528 /// XM_006710529 /// XM_006710530 /// XM_006710531 /// XM_006710532 /// XM_006710533 /// XM_006710534 /// XM_006710535 /// XM_006710536 /// XM_006710537 /// XM_006710538 /// XM_006710539 /// XM_006710540 0001707 // mesoderm formation // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006620 // posttranslational protein targeting to membrane // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0010632 // regulation of epithelial cell migration // inferred from sequence or structural similarity /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0043001 // Golgi to plasma membrane protein transport // inferred from direct assay /// 0051893 // regulation of focal adhesion assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // non-traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // non-traceable author statement -83.13 249.36 -1.85 0.10 0.16 -4.55
208948_s_at 208948_s_at BC000830 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000830.1 /DEF=Homo sapiens, clone MGC:4921, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:4921) /DB_XREF=gi:12654050 /UG=Hs.6113 staufen (Drosophila, RNA-binding protein) /FL=gb:BC000830.1 gb:AF061938.1 gb:NM_017452.1 BC000830 staufen double-stranded RNA binding protein 1 STAU1 6780 NM_001037328 /// NM_004602 /// NM_017452 /// NM_017453 /// NM_017454 /// XM_005260524 /// XM_005260525 /// XM_005260526 /// XM_005260527 /// XM_005260528 /// XM_005260529 /// XM_006723865 /// XM_006723866 /// XM_006723867 /// XM_006723868 /// XM_006723869 0008298 // intracellular mRNA localization // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044297 // cell body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008157 // protein phosphatase 1 binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -67.15 560.75 -1.85 0.10 0.16 -4.55
221549_at 221549_at AF337808 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF337808.1 /DEF=Homo sapiens glutamate rich WD repeat protein (GRWD) mRNA, complete cds. /FEA=mRNA /GEN=GRWD /PROD=glutamate rich WD repeat protein /DB_XREF=gi:13274610 /UG=Hs.218842 Homo sapiens glutamate rich WD repeat protein (GRWD) mRNA, complete cds /FL=gb:BC002440.1 gb:AF337808.1 AF337808 glutamate-rich WD repeat containing 1 GRWD1 83743 NM_031485 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 27.25 37.23 1.85 0.11 0.16 -4.55
215111_s_at 215111_s_at AK027071 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK027071.1 /DEF=Homo sapiens cDNA: FLJ23418 fis, clone HEP21245, highly similar to HSU35048 Human TSC-22 protein mRNA. /FEA=mRNA /DB_XREF=gi:10440100 /UG=Hs.114360 transforming growth factor beta-stimulated protein TSC-22 AK027071 TSC22 domain family, member 1 TSC22D1 8848 NM_001243797 /// NM_001243798 /// NM_001243799 /// NM_006022 /// NM_183422 /// XM_005266582 /// XM_005266583 /// XM_006719887 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 37.63 240.79 1.84 0.11 0.16 -4.55
243_g_at 243_g_at M64571 Homo sapiens Oct 6, 2014 Exemplar sequence Affymetrix Proprietary Database M64571 /FEATURE=mRNA /DEFINITION=HUMMAP4 Human microtubule-associated protein 4 mRNA, complete cds M64571 microtubule-associated protein 4 MAP4 4134 NM_001134364 /// NM_001134365 /// NM_002375 /// NM_030884 /// NM_030885 /// XM_005265133 /// XM_005265134 /// XM_005265135 /// XM_005265138 /// XM_005265139 /// XM_005265147 /// XM_005265155 /// XM_005265157 /// XM_005265158 /// XM_005265159 /// XM_006713140 /// XM_006713141 /// XM_006713142 /// XM_006713143 /// XM_006713144 /// XM_006713145 /// XM_006713146 /// XM_006713147 /// XM_006713148 /// XM_006713149 /// XM_006713150 /// XM_006713151 /// XM_006713152 /// XM_006713153 /// XM_006713154 /// XM_006713155 /// XM_006713156 /// XM_006713157 /// XM_006713158 /// XM_006713159 /// XM_006713160 /// XM_006713161 /// XM_006713162 /// XM_006713163 0007052 // mitotic spindle organization // inferred from mutant phenotype /// 0051012 // microtubule sliding // inferred from mutant phenotype /// 0051294 // establishment of spindle orientation // inferred from genetic interaction /// 0051294 // establishment of spindle orientation // inferred from mutant phenotype /// 0051301 // cell division // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0015631 // tubulin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 45.45 352.80 1.84 0.11 0.16 -4.55
207721_x_at 207721_x_at NM_005340 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005340.1 /DEF=Homo sapiens histidine triad nucleotide-binding protein (HINT), mRNA. /FEA=mRNA /GEN=HINT /PROD=histidine triad nucleotide-binding protein /DB_XREF=gi:4885412 /UG=Hs.256697 histidine triad nucleotide-binding protein /FL=gb:U51004.1 gb:NM_005340.1 NM_005340 histidine triad nucleotide binding protein 1 HINT1 3094 NM_005340 /// NR_024610 /// NR_024611 /// NR_073488 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009154 // purine ribonucleotide catabolic process // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // traceable author statement /// 0016787 // hydrolase activity // inferred from direct assay -130.00 1456.60 -1.84 0.11 0.16 -4.55
217925_s_at 217925_s_at NM_022758 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022758.1 /DEF=Homo sapiens hypothetical protein FLJ22195 (FLJ22195), mRNA. /FEA=mRNA /GEN=FLJ22195 /PROD=hypothetical protein FLJ22195 /DB_XREF=gi:12232426 /UG=Hs.25999 hypothetical protein FLJ22195 /FL=gb:NM_022758.1 NM_022758 chromosome 6 open reading frame 106 C6orf106 64771 NM_022758 /// NM_024294 /// XM_005249298 0005515 // protein binding // inferred from electronic annotation 23.42 61.74 1.84 0.11 0.16 -4.55
219598_s_at 219598_s_at NM_016104 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016104.1 /DEF=Homo sapiens PTD013 protein (PTD013), mRNA. /FEA=mRNA /GEN=PTD013 /PROD=PTD013 protein /DB_XREF=gi:7706668 /UG=Hs.279857 PTD013 protein /FL=gb:AF092134.1 gb:NM_016104.1 NM_016104 RWD domain containing 1 RWDD1 51389 NM_001007464 /// NM_015952 /// NM_016104 0005515 // protein binding // inferred from physical interaction 38.33 242.91 1.84 0.11 0.16 -4.55
219091_s_at 219091_s_at NM_024756 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024756.1 /DEF=Homo sapiens hypothetical protein FLJ13465 (FLJ13465), mRNA. /FEA=mRNA /GEN=FLJ13465 /PROD=hypothetical protein FLJ13465 /DB_XREF=gi:13376090 /UG=Hs.127216 hypothetical protein FLJ13465 /FL=gb:NM_024756.1 NM_024756 multimerin 2 MMRN2 79812 NM_024756 /// XM_005270153 /// XM_006717970 0001525 // angiogenesis // inferred from electronic annotation /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from direct assay /// 0090051 // negative regulation of cell migration involved in sprouting angiogenesis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 104.28 439.51 1.84 0.11 0.16 -4.55
218008_at 218008_at NM_017994 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017994.1 /DEF=Homo sapiens hypothetical protein FLJ10099 (FLJ10099), mRNA. /FEA=mRNA /GEN=FLJ10099 /PROD=hypothetical protein FLJ10099 /DB_XREF=gi:8922228 /UG=Hs.278619 hypothetical protein FLJ10099 /FL=gb:NM_017994.1 NM_017994 transmembrane protein 248 TMEM248 55069 NM_017994 /// XM_005250482 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -45.20 310.52 -1.84 0.11 0.16 -4.55
209453_at 209453_at M81768 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M81768.1 /DEF=Human NaH antiporter (APNH1) mRNA, complete cds. /FEA=mRNA /GEN=APNH /PROD=NaH antiporter /DB_XREF=gi:178752 /UG=Hs.170222 solute carrier family 9 (sodiumhydrogen exchanger), isoform 1 (antiporter, Na+H+, amiloride sensitive) /FL=gb:M81768.1 gb:AF141350.1 gb:AF141351.1 gb:AF141352.1 gb:AF141353.1 gb:AF141354.1 gb:AF141355.1 gb:AF141356.1 gb:AF141357.1 gb:AF141358.1 gb:AF141359.1 gb:AF146430.1 gb:AF146431.1 gb:AF146432.1 gb:AF146433.1 gb:AF146434.1 gb:AF146435.1 gb:AF146436.1 gb:AF146437.1 gb:AF146438.1 gb:AF146439.1 M81768 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 SLC9A1 6548 NM_003047 /// NR_046474 0001101 // response to acid // inferred from direct assay /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // inferred from direct assay /// 0006885 // regulation of pH // traceable author statement /// 0010447 // response to acidity // inferred from direct assay /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016049 // cell growth // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0035725 // sodium ion transmembrane transport // inferred from direct assay /// 0035725 // sodium ion transmembrane transport // inferred from electronic annotation /// 0035794 // positive regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045760 // positive regulation of action potential // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from sequence or structural similarity /// 0051453 // regulation of intracellular pH // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0070997 // neuron death // inferred from electronic annotation /// 0071436 // sodium ion export // inferred from sequence or structural similarity /// 0071468 // cellular response to acidity // inferred from sequence or structural similarity /// 0071805 // potassium ion transmembrane transport // inferred from direct assay /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0055038 // recycling endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:proton antiporter activity // traceable author statement /// 0015385 // sodium:proton antiporter activity // inferred from direct assay /// 0015385 // sodium:proton antiporter activity // inferred from sequence or structural similarity /// 0015386 // potassium:proton antiporter activity // inferred from direct assay /// 0042803 // protein homodimerization activity // traceable author statement /// 0048306 // calcium-dependent protein binding // inferred from direct assay -48.92 116.74 -1.84 0.11 0.16 -4.55
217807_s_at 217807_s_at NM_015710 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015710.1 /DEF=Homo sapiens glioma tumor suppressor candidate region gene 2 (GLTSCR2), mRNA. /FEA=mRNA /GEN=GLTSCR2 /PROD=glioma tumor suppressor candidate region gene 2 /DB_XREF=gi:7657129 /UG=Hs.2237 glioma tumor suppressor candidate region gene 2 /FL=gb:AF182076.1 gb:NM_015710.1 NM_015710 glioma tumor suppressor candidate region gene 2 /// small nucleolar RNA, C/D box 23 GLTSCR2 /// SNORD23 29997 /// 692091 NM_015710 /// NR_003048 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay -267.93 946.49 -1.83 0.11 0.16 -4.55
208818_s_at 208818_s_at BC000419 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000419.1 /DEF=Homo sapiens, catechol-O-methyltransferase, clone MGC:8663, mRNA, complete cds. /FEA=mRNA /PROD=catechol-O-methyltransferase /DB_XREF=gi:12653300 /UG=Hs.240013 catechol-O-methyltransferase /FL=gb:BC000419.1 gb:M58525.1 gb:M65212.1 gb:NM_007310.1 gb:NM_000754.2 BC000419 catechol-O-methyltransferase COMT 1312 NM_000754 /// NM_001135161 /// NM_001135162 /// NM_007310 /// XM_005261229 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0009712 // catechol-containing compound metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // inferred from electronic annotation /// 0032259 // methylation // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // traceable author statement /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045963 // negative regulation of dopamine metabolic process // inferred from electronic annotation /// 0048265 // response to pain // inferred from electronic annotation /// 0048609 // multicellular organismal reproductive process // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050668 // positive regulation of homocysteine metabolic process // inferred from electronic annotation 0005622 // intracellular // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008171 // O-methyltransferase activity // traceable author statement /// 0016206 // catechol O-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -89.97 740.31 -1.83 0.11 0.16 -4.55
211375_s_at 211375_s_at AF141870 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF141870.1 /DEF=Homo sapiens translational control protein 80 mRNA, complete cds. /FEA=mRNA /PROD=translational control protein 80 /DB_XREF=gi:5006601 /UG=Hs.256583 interleukin enhancer binding factor 3, 90kD /FL=gb:AF141870.1 AF141870 interleukin enhancer binding factor 3, 90kDa ILF3 3609 NM_001137673 /// NM_004516 /// NM_012218 /// NM_017620 /// NM_153464 /// XM_005259895 /// XM_006722742 0000279 // M phase // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0045071 // negative regulation of viral genome replication // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -39.03 295.56 -1.83 0.11 0.16 -4.55
212150_at 212150_at AA805651 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA805651 /FEA=EST /DB_XREF=gi:2874401 /DB_XREF=est:nz41a04.s1 /CLONE=IMAGE:1290318 /UG=Hs.84087 KIAA0143 protein AA805651 EFR3 homolog A (S. cerevisiae) EFR3A 23167 NM_015137 /// XM_005250849 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation 40.70 165.75 1.83 0.11 0.16 -4.55
201721_s_at 201721_s_at NM_006762 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006762.1 /DEF=Homo sapiens Lysosomal-associated multispanning membrane protein-5 (LAPTM5), mRNA. /FEA=mRNA /GEN=LAPTM5 /PROD=Lysosomal-associated multispanning membraneprotein-5 /DB_XREF=gi:5803055 /UG=Hs.79356 Lysosomal-associated multispanning membrane protein-5 /FL=gb:U51240.1 gb:NM_006762.1 gb:U30498.1 NM_006762 lysosomal protein transmembrane 5 LAPTM5 7805 NM_006762 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // traceable author statement /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -98.30 762.27 -1.83 0.11 0.16 -4.55
41386_i_at 41386_i_at AB002344 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB002344:Human mRNA for KIAA0346 gene, partial cds /cds=(0,4852) /gb=AB002344 /gi=2280479 /ug=Hs.103915 /len=6121 AB002344 lysine (K)-specific demethylase 6B KDM6B 23135 NM_001080424 /// XM_005256549 /// XM_005256550 /// XM_005256551 /// XM_005256552 /// XM_005256554 /// XM_006721483 /// XM_006721484 0006954 // inflammatory response // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016577 // histone demethylation // inferred from electronic annotation /// 0045446 // endothelial cell differentiation // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048333 // mesodermal cell differentiation // inferred from sequence or structural similarity /// 0055007 // cardiac muscle cell differentiation // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0071557 // histone H3-K27 demethylation // not recorded 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation /// 0071558 // histone demethylase activity (H3-K27 specific) // not recorded -51.75 164.28 -1.82 0.11 0.16 -4.55
213390_at 213390_at AB028987 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB028987.1 /DEF=Homo sapiens mRNA for KIAA1064 protein, partial cds. /FEA=mRNA /GEN=KIAA1064 /PROD=KIAA1064 protein /DB_XREF=gi:5689464 /UG=Hs.72134 KIAA1064 protein AB028987 zinc finger CCCH-type containing 4 ZC3H4 23211 NM_015168 /// XM_005258676 /// XM_005258677 /// XM_005258678 /// XM_006723113 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -34.33 289.59 -1.82 0.11 0.16 -4.56
204588_s_at 204588_s_at NM_003982 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003982.1 /DEF=Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 (SLC7A7), mRNA. /FEA=mRNA /GEN=SLC7A7 /PROD=solute carrier family 7 (cationic amino acidtransporter, y+ system), member 7 /DB_XREF=gi:4507054 /UG=Hs.194693 solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 /FL=gb:BC003062.1 gb:AF092032.1 gb:NM_003982.1 gb:AB011263.1 NM_003982 solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 SLC7A7 9056 NM_001126105 /// NM_001126106 /// NM_003982 /// NR_040448 /// XM_006720302 0003333 // amino acid transmembrane transport // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // traceable author statement /// 0006865 // amino acid transport // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation -45.20 179.00 -1.82 0.11 0.16 -4.56
200978_at 200978_at NM_005917 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005917.1 /DEF=Homo sapiens malate dehydrogenase 1, NAD (soluble) (MDH1), mRNA. /FEA=mRNA /GEN=MDH1 /PROD=malate dehydrogenase 1, NAD (soluble) /DB_XREF=gi:5174538 /UG=Hs.75375 malate dehydrogenase 1, NAD (soluble) /FL=gb:D55654.1 gb:U20352.1 gb:NM_005917.1 NM_005917 malate dehydrogenase 1, NAD (soluble) MDH1 4190 NM_001199111 /// NM_001199112 /// NM_005917 /// XM_005264320 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006108 // malate metabolic process // inferred from electronic annotation /// 0006734 // NADH metabolic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // inferred from electronic annotation /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016615 // malate dehydrogenase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0030060 // L-malate dehydrogenase activity // traceable author statement /// 0047860 // diiodophenylpyruvate reductase activity // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 26.73 556.59 1.82 0.11 0.16 -4.56
201956_s_at 201956_s_at NM_014236 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014236.1 /DEF=Homo sapiens glyceronephosphate O-acyltransferase (GNPAT), mRNA. /FEA=mRNA /GEN=GNPAT /PROD=glyceronephosphate O-acyltransferase /DB_XREF=gi:7657133 /UG=Hs.12482 glyceronephosphate O-acyltransferase /FL=gb:BC000450.1 gb:AF043937.1 gb:NM_014236.1 NM_014236 glyceronephosphate O-acyltransferase GNPAT 8443 NM_014236 /// XM_005273313 /// XM_005273314 0006644 // phospholipid metabolic process // traceable author statement /// 0006650 // glycerophospholipid metabolic process // inferred from electronic annotation /// 0006654 // phosphatidic acid biosynthetic process // traceable author statement /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008611 // ether lipid biosynthetic process // inferred from direct assay /// 0008611 // ether lipid biosynthetic process // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0021587 // cerebellum morphogenesis // inferred from electronic annotation /// 0030913 // paranodal junction assembly // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0042594 // response to starvation // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement /// 0070542 // response to fatty acid // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // non-traceable author statement /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // traceable author statement /// 0005782 // peroxisomal matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008374 // O-acyltransferase activity // inferred from electronic annotation /// 0016287 // glycerone-phosphate O-acyltransferase activity // inferred from direct assay /// 0016287 // glycerone-phosphate O-acyltransferase activity // traceable author statement /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation -31.12 205.51 -1.82 0.11 0.16 -4.56
208910_s_at 208910_s_at L04636 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L04636.1 /DEF=Homo sapiens pre-mRNA splicing factor 2 p32 subunit (SF2p32) mRNA, complete cds. /FEA=mRNA /PROD=splicing factor /DB_XREF=gi:338044 /UG=Hs.78614 complement component 1, q subcomponent binding protein /FL=gb:NM_001212.2 gb:BC000435.1 gb:L04636.1 L04636 complement component 1, q subcomponent binding protein C1QBP 708 NM_001212 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002376 // immune system process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0007597 // blood coagulation, intrinsic pathway // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030449 // regulation of complement activation // inferred from direct assay /// 0032689 // negative regulation of interferon-gamma production // inferred from direct assay /// 0032695 // negative regulation of interleukin-12 production // inferred from direct assay /// 0039534 // negative regulation of MDA-5 signaling pathway // inferred from direct assay /// 0039536 // negative regulation of RIG-I signaling pathway // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042256 // mature ribosome assembly // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0050687 // negative regulation of defense response to virus // inferred from mutant phenotype /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0070131 // positive regulation of mitochondrial translation // inferred from sequence or structural similarity /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from direct assay /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from mutant phenotype /// 1901165 // positive regulation of trophoblast cell migration // inferred from mutant phenotype /// 2000510 // positive regulation of dendritic cell chemotaxis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0001849 // complement component C1q binding // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005540 // hyaluronic acid binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from direct assay /// 0030984 // kininogen binding // inferred from direct assay /// 0031690 // adrenergic receptor binding // inferred from sequence or structural similarity /// 0097177 // mitochondrial ribosome binding // inferred from sequence or structural similarity 115.03 533.96 1.82 0.11 0.16 -4.56
202343_x_at 202343_x_at NM_001862 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001862.1 /DEF=Homo sapiens cytochrome c oxidase subunit Vb (COX5B), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=COX5B /PROD=cytochrome c oxidase subunit Vb /DB_XREF=gi:4502982 /UG=Hs.1342 cytochrome c oxidase subunit Vb /FL=gb:M19961.1 gb:NM_001862.1 NM_001862 cytochrome c oxidase subunit Vb COX5B 1329 NM_001862 0007585 // respiratory gaseous exchange // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 28.67 421.84 1.82 0.11 0.16 -4.56
212680_x_at 212680_x_at BE305165 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE305165 /FEA=EST /DB_XREF=gi:9177184 /DB_XREF=est:601186685T1 /CLONE=IMAGE:2959580 /UG=Hs.100623 phospholipase C, beta 3, neighbor pseudogene BE305165 protein phosphatase 1, regulatory (inhibitor) subunit 14B PPP1R14B 26472 NM_138689 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0008599 // protein phosphatase type 1 regulator activity // inferred from electronic annotation /// 0019212 // phosphatase inhibitor activity // inferred from electronic annotation -36.38 392.39 -1.82 0.11 0.16 -4.56
216304_x_at 216304_x_at AJ295618 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ295618 /DEF=Homo sapiens FTSH gene for putative ATPases, exons 1 and 2 and join CDS /FEA=mRNA /DB_XREF=gi:9506352 /UG=Hs.206521 YME1 (S.cerevisiae)-like 1 AJ295618 YME1-like 1 ATPase YME1L1 10730 NM_001253866 /// NM_014263 /// NM_139312 /// NM_139313 0006508 // proteolysis // inferred from electronic annotation /// 0006515 // misfolded or incompletely synthesized protein catabolic process // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031295 // T cell costimulation // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042287 // MHC protein binding // non-traceable author statement /// 0042605 // peptide antigen binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -103.83 592.94 -1.82 0.11 0.16 -4.56
212369_at 212369_at AI264312 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI264312 /FEA=EST /DB_XREF=gi:3872515 /DB_XREF=est:qi09a10.x1 /CLONE=IMAGE:1855962 /UG=Hs.103315 trinucleotide repeat containing 1 AI264312 zinc finger protein 384 ZNF384 171017 NM_001039916 /// NM_001039917 /// NM_001039918 /// NM_001039919 /// NM_001039920 /// NM_001135734 /// NM_133476 /// XM_006718963 /// XM_006718964 /// XM_006718965 /// XM_006718966 /// XM_006718967 /// XM_006718968 /// XM_006718969 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050714 // positive regulation of protein secretion // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -25.23 178.06 -1.81 0.11 0.16 -4.56
217982_s_at 217982_s_at NM_006791 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006791.1 /DEF=Homo sapiens MORF-related gene 15 (MRG15), mRNA. /FEA=mRNA /GEN=MRG15 /PROD=MORF-related gene 15 /DB_XREF=gi:5803101 /UG=Hs.6353 MORF-related gene 15 /FL=gb:BC002936.1 gb:AF070664.1 gb:AF100615.1 gb:NM_006791.1 gb:AF161546.1 gb:AF167173.1 NM_006791 mortality factor 4 like 1 MORF4L1 10933 NM_001265603 /// NM_001265604 /// NM_001265605 /// NM_006791 /// NM_206839 0000724 // double-strand break repair via homologous recombination // inferred from direct assay /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from direct assay /// 0043968 // histone H2A acetylation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0016580 // Sin3 complex // inferred from direct assay /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction -278.12 1738.44 -1.81 0.11 0.16 -4.56
203095_at 203095_at NM_002453 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002453.1 /DEF=Homo sapiens mitochondrial translational initiation factor 2 (MTIF2), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=MTIF2 /PROD=mitochondrial translational initiation factor 2precursor /DB_XREF=gi:4505276 /UG=Hs.149894 mitochondrial translational initiation factor 2 /FL=gb:NM_002453.1 gb:L34600.1 NM_002453 mitochondrial translational initiation factor 2 MTIF2 4528 NM_001005369 /// NM_002453 /// XM_005264335 /// XM_006712023 /// XM_006712024 0001732 // formation of translation initiation complex // inferred from sequence or structural similarity /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from sequence or structural similarity /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032790 // ribosome disassembly // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred by curator /// 0005739 // mitochondrion // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // inferred from sequence or structural similarity /// 0043024 // ribosomal small subunit binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay -25.97 132.79 -1.81 0.11 0.16 -4.56
31874_at 31874_at Y07846 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. Y07846:H.sapiens mRNA for GAR22 protein /cds=(132,1145) /gb=Y07846 /gi=1666070 /ug=Hs.15346 /len=2238 Y07846 growth arrest-specific 2 like 1 GAS2L1 10634 NM_001278730 /// NM_006478 /// NM_152236 /// NM_152237 0001578 // microtubule bundle formation // inferred from mutant phenotype /// 0007026 // negative regulation of microtubule depolymerization // inferred from mutant phenotype /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0009267 // cellular response to starvation // inferred from sequence or structural similarity /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0045647 // negative regulation of erythrocyte differentiation // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from direct assay /// 0097067 // cellular response to thyroid hormone stimulus // inferred from direct assay 0001725 // stress fiber // inferred from direct assay /// 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0008093 // cytoskeletal adaptor activity // inferred from direct assay /// 0046966 // thyroid hormone receptor binding // inferred from direct assay 33.35 159.38 1.81 0.11 0.16 -4.56
218467_at 218467_at NM_020232 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020232.1 /DEF=Homo sapiens x 003 protein (MDS003), mRNA. /FEA=mRNA /GEN=MDS003 /PROD=x 003 protein /DB_XREF=gi:9910421 /UG=Hs.3726 x 003 protein /FL=gb:AF168712.1 gb:NM_020232.1 NM_020232 proteasome (prosome, macropain) assembly chaperone 2 PSMG2 56984 NM_020232 /// NM_147163 0006915 // apoptotic process // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043248 // proteasome assembly // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction -52.55 470.98 -1.81 0.11 0.16 -4.56
201842_s_at 201842_s_at AI826799 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI826799 /FEA=EST /DB_XREF=gi:5447470 /DB_XREF=est:wk56d07.x1 /CLONE=IMAGE:2419405 /UG=Hs.76224 EGF-containing fibulin-like extracellular matrix protein 1 /FL=gb:U03877.1 gb:NM_004105.2 AI826799 EGF containing fibulin-like extracellular matrix protein 1 EFEMP1 2202 NM_001039348 /// NM_001039349 /// NM_004105 /// XM_005264205 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007601 // visual perception // traceable author statement /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0032331 // negative regulation of chondrocyte differentiation // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005006 // epidermal growth factor-activated receptor activity // inferred from direct assay /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation -652.48 4815.81 -1.81 0.11 0.17 -4.56
203098_at 203098_at AL050164 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050164.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586C1622 (from clone DKFZp586C1622); partial cds. /FEA=mRNA /GEN=DKFZp586C1622 /PROD=hypothetical protein /DB_XREF=gi:4884378 /UG=Hs.16081 chromodomain protein, Y chromosome-like /FL=gb:AF081258.1 gb:AF081259.1 gb:NM_004824.1 AL050164 chromodomain protein, Y-like CDYL 9425 NM_001143970 /// NM_001143971 /// NM_004824 /// NM_170752 /// NR_026590 /// XM_006715272 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay 30.17 126.01 1.81 0.11 0.17 -4.56
201515_s_at 201515_s_at NM_004622 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004622.1 /DEF=Homo sapiens translin (TSN), mRNA. /FEA=mRNA /GEN=TSN /PROD=translin /DB_XREF=gi:4759269 /UG=Hs.75066 translin /FL=gb:NM_004622.1 NM_004622 translin TSN 7247 NM_001261401 /// NM_004622 /// NR_048556 /// NR_048557 /// NR_048558 /// NR_048559 0006310 // DNA recombination // traceable author statement /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 96.05 521.45 1.81 0.11 0.17 -4.56
200080_s_at 200080_s_at AI955655 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI955655 /FEA=EST /DB_XREF=gi:5747965 /DB_XREF=est:wt36f03.x1 /CLONE=IMAGE:2509565 /UG=Hs.181307 H3 histone, family 3A AI955655 H3 histone, family 3A /// H3 histone, family 3A, pseudogene 4 /// H3 histone, family 3B (H3.3B) H3F3A /// H3F3AP4 /// H3F3B 3020 /// 3021 /// 440926 NM_002107 /// NM_005324 /// NR_002315 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 292.12 1351.89 1.81 0.11 0.17 -4.56
214924_s_at 214924_s_at AK000754 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000754.1 /DEF=Homo sapiens cDNA FLJ20747 fis, clone HEP05884, highly similar to J03068 Human DNF1552. /FEA=mRNA /DB_XREF=gi:7021038 /UG=Hs.6705 KIAA1042 protein AK000754 trafficking protein, kinesin binding 1 TRAK1 22906 NM_001042646 /// NM_001265608 /// NM_001265609 /// NM_001265610 /// NM_014965 /// XM_005264956 /// XM_005264957 /// XM_005264958 /// XM_005264959 /// XM_005264960 /// XM_005264962 /// XM_005264963 /// XM_005264964 /// XM_006713028 /// XM_006713029 /// XM_006713030 /// XM_006713031 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006493 // protein O-linked glycosylation // inferred from sequence or structural similarity /// 0006605 // protein targeting // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // inferred from direct assay 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0050811 // GABA receptor binding // inferred from electronic annotation 30.95 117.85 1.81 0.11 0.17 -4.56
218825_at 218825_at NM_016215 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016215.1 /DEF=Homo sapiens NEU1 protein (LOC51162), mRNA. /FEA=mRNA /GEN=LOC51162 /PROD=NEU1 protein /DB_XREF=gi:7705888 /UG=Hs.91481 NEU1 protein /FL=gb:AL512735.1 gb:AF186111.1 gb:NM_016215.1 NM_016215 EGF-like-domain, multiple 7 EGFL7 51162 NM_016215 /// NM_201446 /// NR_045110 /// NR_045111 /// NR_046367 /// XM_006717138 /// XM_006717139 /// XM_006717140 /// XM_006717141 0001525 // angiogenesis // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // inferred from mutant phenotype 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005112 // Notch binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 51.75 482.00 1.81 0.11 0.17 -4.56
200016_x_at 200016_x_at NM_002136 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002136.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein A1 (HNRPA1), mRNA. /FEA=mRNA /GEN=HNRPA1 /PROD=heterogeneous nuclear ribonucleoprotein A1 /DB_XREF=gi:4504444 /UG=Hs.249495 heterogeneous nuclear ribonucleoprotein A1 /FL=gb:NM_002136.1 NM_002136 heterogeneous nuclear ribonucleoprotein A1 /// heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 HNRNPA1 /// HNRNPA1P10 3178 /// 664709 NM_002136 /// NM_031157 /// NR_002944 /// XM_005268826 /// XR_245923 /// XR_245924 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006405 // RNA export from nucleus // inferred by curator /// 0006810 // transport // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051168 // nuclear export // inferred from direct assay /// 0051170 // nuclear import // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // traceable author statement /// 0003727 // single-stranded RNA binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -380.83 2825.64 -1.81 0.11 0.17 -4.56
205612_at 205612_at NM_007351 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007351.1 /DEF=Homo sapiens multimerin (MMRN), mRNA. /FEA=mRNA /GEN=MMRN /PROD=multimerin /DB_XREF=gi:6681258 /UG=Hs.268107 multimerin /FL=gb:NM_007351.1 gb:U27109.1 NM_007351 multimerin 1 MMRN1 22915 NM_007351 /// XM_005262856 0002576 // platelet degranulation // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement 0005576 // extracellular region // traceable author statement /// 0031093 // platelet alpha granule lumen // traceable author statement 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 143.02 427.89 1.80 0.11 0.17 -4.56
221434_s_at 221434_s_at NM_031210 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031210.1 /DEF=Homo sapiens hypothetical protein DC50 (DC50), mRNA. /FEA=CDS /GEN=DC50 /PROD=hypothetical protein DC50 /DB_XREF=gi:13654277 /FL=gb:NM_031210.1 NM_031210 SRA stem-loop interacting RNA binding protein SLIRP 81892 NM_001267863 /// NM_001267864 /// NM_031210 /// NR_052025 0000961 // negative regulation of mitochondrial RNA catabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 85.83 697.39 1.80 0.11 0.17 -4.56
201314_at 201314_at NM_006374 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006374.1 /DEF=Homo sapiens serinethreonine kinase 25 (Ste20, yeast homolog) (STK25), mRNA. /FEA=mRNA /GEN=STK25 /PROD=serinethreonine kinase 25 (Ste20, yeasthomolog) /DB_XREF=gi:5454173 /UG=Hs.155206 serinethreonine kinase 25 (Ste20, yeast homolog) /FL=gb:D63780.1 gb:NM_006374.1 NM_006374 serine/threonine kinase 25 STK25 10494 NM_001271977 /// NM_001271978 /// NM_001271979 /// NM_001271980 /// NM_001282305 /// NM_001282306 /// NM_001282307 /// NM_001282308 /// NM_006374 /// XM_006712197 /// XM_006712198 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // not recorded /// 0006979 // response to oxidative stress // traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0045595 // regulation of cell differentiation // not recorded /// 0050772 // positive regulation of axonogenesis // inferred from electronic annotation /// 0051645 // Golgi localization // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 28.45 180.65 1.80 0.11 0.17 -4.56
201295_s_at 201295_s_at BF111821 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF111821 /FEA=EST /DB_XREF=gi:10941511 /DB_XREF=est:7l36a06.x1 /CLONE=IMAGE:3523474 /UG=Hs.187991 DKFZP564A122 protein /FL=gb:AF106684.1 gb:NM_015626.1 BF111821 WD repeat and SOCS box containing 1 WSB1 26118 NM_015626 /// NM_134264 /// NM_134265 /// XM_005257963 /// XR_243778 /// XR_429881 0016310 // phosphorylation // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation -34.15 49.17 -1.80 0.11 0.17 -4.56
212202_s_at 212202_s_at BG493972 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG493972 /FEA=EST /DB_XREF=gi:13455486 /DB_XREF=est:602542252F1 /CLONE=IMAGE:4673316 /UG=Hs.16492 DKFZP564G2022 protein BG493972 transmembrane protein 87A TMEM87A 25963 NM_001110503 /// NM_001286487 /// NM_015497 /// XM_005254287 /// XM_006720468 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -30.02 138.61 -1.79 0.11 0.17 -4.56
212488_at 212488_at N30339 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N30339 /FEA=EST /DB_XREF=gi:1148859 /DB_XREF=est:yw75f06.s1 /CLONE=IMAGE:258083 /UG=Hs.146428 collagen, type V, alpha 1 N30339 collagen, type V, alpha 1 COL5A1 1289 NM_000093 /// NM_001278074 0001568 // blood vessel development // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007411 // axon guidance // traceable author statement /// 0016477 // cell migration // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from mutant phenotype /// 0030199 // collagen fibril organization // non-traceable author statement /// 0030574 // collagen catabolic process // traceable author statement /// 0032964 // collagen biosynthetic process // inferred from mutant phenotype /// 0035313 // wound healing, spreading of epidermal cells // inferred from mutant phenotype /// 0035989 // tendon development // inferred from electronic annotation /// 0043206 // extracellular fibril organization // inferred from mutant phenotype /// 0043588 // skin development // inferred from mutant phenotype /// 0045112 // integrin biosynthetic process // inferred from mutant phenotype /// 0048592 // eye morphogenesis // inferred from mutant phenotype /// 0051128 // regulation of cellular component organization // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005588 // collagen type V trimer // inferred from mutant phenotype /// 0005604 // basement membrane // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from mutant phenotype /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // non-traceable author statement /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0043394 // proteoglycan binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // inferred from direct assay 72.47 529.86 1.79 0.11 0.17 -4.56
217491_x_at 217491_x_at AF042165 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF042165 /DEF=Homo sapiens cytochrome c oxidase subunit VIIc (COX7CP1) pseudogene, complete sequence /FEA=CDS /DB_XREF=gi:3861486 /UG=Hs.278494 cytochrome c oxidase subunit VIIc pseudogene 1 AF042165 cytochrome c oxidase subunit VIIc COX7C 1350 NM_001867 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 167.67 906.49 1.79 0.11 0.17 -4.56
201049_s_at 201049_s_at NM_022551 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022551.1 /DEF=Homo sapiens ribosomal protein S18 (RPS18), mRNA. /FEA=mRNA /GEN=RPS18 /PROD=ribosomal protein S18 /DB_XREF=gi:11968181 /UG=Hs.275865 ribosomal protein S18 /FL=gb:NM_022551.1 NM_022551 ribosomal protein S18 RPS18 6222 NM_022551 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042254 // ribosome biogenesis // not recorded /// 0044267 // cellular protein metabolic process // traceable author statement 0005581 // collagen trimer // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0015935 // small ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -773.10 4482.68 -1.79 0.11 0.17 -4.56
202671_s_at 202671_s_at NM_003681 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003681.1 /DEF=Homo sapiens pyridoxal (pyridoxine, vitamin B6) kinase (PDXK), mRNA. /FEA=mRNA /GEN=PDXK /PROD=pyridoxal kinase /DB_XREF=gi:4505700 /UG=Hs.38041 pyridoxal (pyridoxine, vitamin B6) kinase /FL=gb:BC000123.1 gb:U89606.1 gb:NM_003681.1 NM_003681 pyridoxal (pyridoxine, vitamin B6) kinase PDXK 8566 NM_003681 /// NM_021941 /// XM_005261195 /// XM_005261196 /// XM_005261198 /// XM_005261199 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008283 // cell proliferation // inferred from direct assay /// 0009443 // pyridoxal 5'-phosphate salvage // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0042816 // vitamin B6 metabolic process // inferred by curator /// 0042816 // vitamin B6 metabolic process // traceable author statement /// 0042823 // pyridoxal phosphate biosynthetic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0005524 // ATP binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0008478 // pyridoxal kinase activity // inferred from direct assay /// 0008478 // pyridoxal kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030955 // potassium ion binding // inferred from direct assay /// 0031402 // sodium ion binding // inferred from direct assay /// 0031403 // lithium ion binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -27.78 112.21 -1.79 0.11 0.17 -4.56
200705_s_at 200705_s_at NM_001959 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001959.1 /DEF=Homo sapiens eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. /FEA=mRNA /GEN=EEF1B2 /PROD=eukaryotic translation elongation factor 1 beta2 /DB_XREF=gi:4503476 /UG=Hs.275959 eukaryotic translation elongation factor 1 beta 2 /FL=gb:BC004931.1 gb:NM_001959.1 NM_001959 eukaryotic translation elongation factor 1 beta 2 /// small nucleolar RNA, H/ACA box 41 EEF1B2 /// SNORA41 1933 /// 619569 NM_001037663 /// NM_001959 /// NM_021121 /// NR_002590 0006412 // translation // traceable author statement /// 0006414 // translational elongation // non-traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // non-traceable author statement 0003746 // translation elongation factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction -137.55 1796.40 -1.79 0.11 0.17 -4.56
203980_at 203980_at NM_001442 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001442.1 /DEF=Homo sapiens fatty acid binding protein 4, adipocyte (FABP4), mRNA. /FEA=mRNA /GEN=FABP4 /PROD=fatty acid binding protein 4, adipocyte /DB_XREF=gi:4557578 /UG=Hs.83213 fatty acid binding protein 4, adipocyte /FL=gb:BC003672.1 gb:J02874.1 gb:NM_001442.1 NM_001442 fatty acid binding protein 4, adipocyte FABP4 2167 NM_001442 0001816 // cytokine production // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // traceable author statement /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050872 // white fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0071285 // cellular response to lithium ion // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005811 // lipid particle // traceable author statement 0005215 // transporter activity // inferred from electronic annotation /// 0005504 // fatty acid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation -61.52 289.91 -1.79 0.11 0.17 -4.56
214988_s_at 214988_s_at X63071 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X63071.1 /DEF=H.sapiens mRNA for novel DNA binding protein. /FEA=mRNA /GEN=DBP-5 /PROD=DBP-5 protein /DB_XREF=gi:30487 /UG=Hs.92909 SON DNA binding protein X63071 SON DNA binding protein SON 6651 NM_001291411 /// NM_001291412 /// NM_003103 /// NM_032195 /// NM_138925 /// NM_138927 /// NR_103796 /// NR_103797 /// NR_103798 /// XM_006724043 /// XM_006724044 /// XM_006724045 /// XR_430355 0000226 // microtubule cytoskeleton organization // inferred from mutant phenotype /// 0000910 // cytokinesis // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043484 // regulation of RNA splicing // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0003676 // nucleic acid binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // inferred from electronic annotation 68.27 513.11 1.79 0.11 0.17 -4.56
204031_s_at 204031_s_at NM_005016 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005016.1 /DEF=Homo sapiens poly(rC)-binding protein 2 (PCBP2), mRNA. /FEA=mRNA /GEN=PCBP2 /PROD=poly(rC)-binding protein 2 /DB_XREF=gi:4826885 /UG=Hs.63525 poly(rC)-binding protein 2 /FL=gb:BC001155.1 gb:NM_005016.1 NM_005016 poly(rC) binding protein 2 PCBP2 5094 NM_001098620 /// NM_001128911 /// NM_001128912 /// NM_001128913 /// NM_001128914 /// NM_005016 /// NM_031989 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016071 // mRNA metabolic process // non-traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0050687 // negative regulation of defense response to virus // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -275.88 1508.44 -1.79 0.11 0.17 -4.56
204092_s_at 204092_s_at NM_003600 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003600.1 /DEF=Homo sapiens serinethreonine kinase 15 (STK15), mRNA. /FEA=mRNA /GEN=STK15 /PROD=serinethreonine kinase 15 /DB_XREF=gi:4507274 /UG=Hs.48915 serinethreonine kinase 15 /FL=gb:AF008551.1 gb:AF011468.1 gb:NM_003600.1 NM_003600 aurora kinase A AURKA 6790 NM_003600 /// NM_198433 /// NM_198434 /// NM_198435 /// NM_198436 /// NM_198437 /// XM_005260534 /// XM_006723871 /// XM_006723872 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // non-traceable author statement /// 0007051 // spindle organization // non-traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0043146 // spindle stabilization // inferred from mutant phenotype /// 0045840 // positive regulation of mitosis // traceable author statement /// 0046605 // regulation of centrosome cycle // traceable author statement /// 0046777 // protein autophosphorylation // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0030496 // midbody // traceable author statement /// 0031616 // spindle pole centrosome // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004712 // protein serine/threonine/tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 24.75 197.25 1.79 0.11 0.17 -4.56
200043_at 200043_at NM_004450 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004450.1 /DEF=Homo sapiens enhancer of rudimentary (Drosophila) homolog (ERH), mRNA. /FEA=mRNA /GEN=ERH /PROD=enhancer of rudimentary (Drosophila) homolog /DB_XREF=gi:4758301 /UG=Hs.118757 enhancer of rudimentary (Drosophila) homolog /FL=gb:D85758.1 gb:U66871.1 gb:NM_004450.1 NM_004450 enhancer of rudimentary homolog (Drosophila) ERH 2079 NM_004450 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006213 // pyrimidine nucleoside metabolic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation 0030496 // midbody // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay 262.17 1427.51 1.79 0.11 0.17 -4.56
209104_s_at 209104_s_at BC000009 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000009.1 /DEF=Homo sapiens, likely homolog of yeast Nhp2, component of the HACA snoRNP; hypothetical protein FLJ20479, clone MGC:1038, mRNA, complete cds. /FEA=mRNA /PROD=likely homolog of yeast Nhp2, component of theHACA snoRNP; hypothetical protein FLJ20479 /DB_XREF=gi:12652540 /UG=Hs.23990 nucleolar protein family A, member 2 (HACA small nucleolar RNPs) /FL=gb:BC000009.1 gb:NM_017838.1 BC000009 NHP2 ribonucleoprotein NHP2 55651 NM_001034833 /// NM_017838 0006364 // rRNA processing // inferred from electronic annotation /// 0031118 // rRNA pseudouridine synthesis // inferred from sequence or structural similarity /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005732 // small nucleolar ribonucleoprotein complex // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0015030 // Cajal body // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0030515 // snoRNA binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay 74.48 539.56 1.79 0.11 0.17 -4.56
205512_s_at 205512_s_at NM_004208 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004208.1 /DEF=Homo sapiens programmed cell death 8 (apoptosis-inducing factor) (PDCD8), mRNA. /FEA=mRNA /GEN=PDCD8 /PROD=programmed cell death 8 (apoptosis-inducingfactor) /DB_XREF=gi:4757731 /UG=Hs.18720 programmed cell death 8 (apoptosis-inducing factor) /FL=gb:AF100928.1 gb:NM_004208.1 NM_004208 apoptosis-inducing factor, mitochondrion-associated, 1 AIFM1 9131 NM_001130846 /// NM_001130847 /// NM_004208 /// NM_145812 /// NM_145813 0006308 // DNA catabolic process // traceable author statement /// 0006309 // apoptotic DNA fragmentation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0008219 // cell death // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from direct assay /// 0030261 // chromosome condensation // traceable author statement /// 0032981 // mitochondrial respiratory chain complex I assembly // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from mutant phenotype /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // traceable author statement /// 0016174 // NAD(P)H oxidase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NAD(P)H // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation 35.80 111.90 1.79 0.11 0.17 -4.56
218773_s_at 218773_s_at NM_012228 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012228.1 /DEF=Homo sapiens pilin-like transcription factor (PILB), mRNA. /FEA=mRNA /GEN=PILB /PROD=pilin-like transcription factor /DB_XREF=gi:6912591 /UG=Hs.279754 pilin-like transcription factor /FL=gb:AF122004.1 gb:NM_012228.1 NM_012228 methionine sulfoxide reductase B2 MSRB2 22921 NM_012228 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0030041 // actin filament polymerization // inferred from sequence or structural similarity /// 0030091 // protein repair // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from sequence or structural similarity 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016671 // oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor // inferred from electronic annotation /// 0033743 // peptide-methionine (R)-S-oxide reductase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 27.65 176.40 1.79 0.11 0.17 -4.56
219549_s_at 219549_s_at NM_006054 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006054.1 /DEF=Homo sapiens reticulon 3 (RTN3), mRNA. /FEA=mRNA /GEN=RTN3 /PROD=reticulon 3 /DB_XREF=gi:5174654 /UG=Hs.252831 reticulon 3 /FL=gb:BC000634.1 gb:AF059524.1 gb:AF119297.1 gb:NM_006054.1 NM_006054 reticulon 3 RTN3 10313 NM_001265589 /// NM_001265590 /// NM_001265591 /// NM_006054 /// NM_201428 /// NM_201429 /// NM_201430 /// NR_049750 /// NR_049751 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0071786 // endoplasmic reticulum tubular network organization // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from physical interaction 47.93 304.91 1.79 0.11 0.17 -4.56
200717_x_at 200717_x_at NM_000971 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000971.1 /DEF=Homo sapiens ribosomal protein L7 (RPL7), mRNA. /FEA=mRNA /GEN=RPL7 /PROD=ribosomal protein L7 /DB_XREF=gi:4506658 /UG=Hs.153 ribosomal protein L7 /FL=gb:L16558.1 gb:NM_000971.1 NM_000971 ribosomal protein L7 RPL7 6129 NM_000971 /// XM_006716463 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -467.85 4551.50 -1.79 0.11 0.17 -4.56
218388_at 218388_at NM_012088 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012088.1 /DEF=Homo sapiens 6-phosphogluconolactonase (PGLS), mRNA. /FEA=mRNA /GEN=PGLS /PROD=6-phosphogluconolactonase /DB_XREF=gi:6912585 /UG=Hs.100071 6-phosphogluconolactonase /FL=gb:NM_012088.1 NM_012088 6-phosphogluconolactonase PGLS 25796 NM_012088 /// XM_005259849 0005975 // carbohydrate metabolic process // traceable author statement /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016787 // hydrolase activity // inferred from electronic annotation /// 0017057 // 6-phosphogluconolactonase activity // inferred from direct assay /// 0048029 // monosaccharide binding // inferred from electronic annotation -41.87 137.41 -1.79 0.11 0.17 -4.56
209653_at 209653_at U93240 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U93240.1 /DEF=Human importin alpha 3 mRNA, complete cds. /FEA=mRNA /PROD=importin alpha 3 /DB_XREF=gi:1928974 /UG=Hs.302499 karyopherin alpha 4 (importin alpha 3) /FL=gb:AB002533.2 gb:NM_002268.2 gb:U93240.1 U93240 karyopherin alpha 4 (importin alpha 3) KPNA4 3840 NM_002268 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation -28.90 158.88 -1.79 0.11 0.17 -4.56
208886_at 208886_at BC000145 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000145.1 /DEF=Homo sapiens, H1 histone family, member 0, clone MGC:5241, mRNA, complete cds. /FEA=mRNA /PROD=H1 histone family, member 0 /DB_XREF=gi:12652786 /UG=Hs.226117 H1 histone family, member 0 /FL=gb:BC000145.1 gb:NM_005318.1 BC000145 H1 histone family, member 0 H1F0 3005 NM_005318 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0009451 // RNA modification // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 37.68 180.39 1.79 0.11 0.17 -4.56
215434_x_at 215434_x_at AV684285 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV684285 /FEA=EST /DB_XREF=gi:10286148 /DB_XREF=est:AV684285 /CLONE=GKCENE06 /UG=Hs.323463 KIAA1693 protein; hypothetical protein FLJ20719 AV684285 neuroblastoma breakpoint family member 1-like /// neuroblastoma breakpoint family, member 1 /// neuroblastoma breakpoint family, member 10 /// neuroblastoma breakpoint family, member 11 /// neuroblastoma breakpoint family, member 14 /// neuroblastoma breakpoint family, member 15 /// neuroblastoma breakpoint family, member 19 /// neuroblastoma breakpoint family, member 26 LOC102724250 /// NBPF1 /// NBPF10 /// NBPF11 /// NBPF14 /// NBPF15 /// NBPF19 /// NBPF26 25832 /// 55672 /// 200030 /// 284565 /// 100132406 /// 101060226 /// 101060684 /// 102724250 NM_001039703 /// NM_001101663 /// NM_001102663 /// NM_001170755 /// NM_015383 /// NM_017940 /// NM_173638 /// NM_183372 /// NR_046188 /// NR_110864 /// XM_003960069 /// XM_003960230 /// XM_005245096 /// XM_005245097 /// XM_005276139 /// XM_005276140 /// XM_005276167 /// XM_005276168 /// XM_005276169 /// XM_005276170 /// XM_005276171 /// XM_005276172 /// XM_005276173 /// XM_005276174 /// XM_005276175 /// XM_005276176 /// XM_005276177 /// XM_005276178 /// XM_005276179 /// XM_005276180 /// XM_005276181 /// XM_005276182 /// XM_005276183 /// XM_005276184 /// XM_005276185 /// XM_005276186 /// XM_005276187 /// XM_005277469 /// XM_005277470 /// XM_005277471 /// XM_005277472 /// XM_005277473 /// XM_005277474 /// XM_005277475 /// XM_005277476 /// XM_005277477 /// XM_005277478 /// XM_005277479 /// XM_005277480 /// XM_005277481 /// XM_005277482 /// XM_005277483 /// XM_005277484 /// XM_005277485 /// XM_005277486 /// XM_005277487 /// XM_005277488 /// XM_005277503 /// XM_005277504 /// XM_005277505 /// XM_006710234 /// XM_006711091 /// XM_006711092 /// XM_006711093 /// XM_006711094 /// XM_006711095 /// XM_006711096 /// XM_006711197 /// XM_006711265 /// XM_006711707 /// XM_006711708 /// XM_006711709 /// XM_006711710 /// XM_006711711 /// XM_006711712 /// XM_006724882 /// XM_006724883 /// XM_006724884 /// XM_006724885 /// XM_006724886 /// XM_006724887 /// XM_006724888 /// XM_006724889 /// XM_006724890 /// XM_006724891 /// XM_006724892 /// XM_006724893 /// XM_006724894 /// XM_006726340 /// XM_006726341 /// XM_006726342 /// XM_006726343 /// XM_006726344 /// XM_006726345 /// XM_006726360 /// XM_006726361 /// XM_006726362 /// XM_006726363 /// XM_006726364 /// XM_006726365 /// XR_426769 /// XR_430573 0005737 // cytoplasm // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay -116.27 259.16 -1.78 0.12 0.17 -4.56
208683_at 208683_at M23254 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M23254.1 /DEF=Human Ca2-activated neutral protease large subunit (CANP) mRNA, complete cds. /FEA=mRNA /GEN=CANP /PROD=neutral protease large subunit /DB_XREF=gi:511636 /UG=Hs.76288 calpain 2, (mII) large subunit /FL=gb:NM_001748.3 gb:M23254.1 gb:AF261089.1 M23254 calpain 2, (m/II) large subunit CAPN2 824 NM_001146068 /// NM_001748 0001666 // response to hypoxia // inferred from electronic annotation /// 0001824 // blastocyst development // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0007520 // myoblast fusion // inferred from electronic annotation /// 0016540 // protein autoprocessing // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred by curator /// 0071230 // cellular response to amino acid stimulus // inferred from sequence or structural similarity 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0030864 // cortical actin cytoskeleton // traceable author statement /// 0031143 // pseudopodium // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097038 // perinuclear endoplasmic reticulum // inferred from direct assay 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // non-traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 207.62 1645.46 1.78 0.12 0.17 -4.56
221427_s_at 221427_s_at NM_030937 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030937.1 /DEF=Homo sapiens hypothetical protein hCLA-iso (HCLA-ISO), mRNA. /FEA=CDS /GEN=HCLA-ISO /PROD=hypothetical protein hCLA-iso /DB_XREF=gi:13569904 /FL=gb:NM_030937.1 NM_030937 cyclin L2 CCNL2 81669 NM_001039577 /// NM_001144867 /// NM_001144868 /// NM_030937 /// XM_005244803 /// XM_006710931 /// XM_006710932 /// XM_006710933 /// XM_006710934 /// XR_241043 /// XR_426629 /// XR_426630 /// XR_426631 /// XR_426632 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation -24.83 101.94 -1.78 0.12 0.17 -4.56
204093_at 204093_at NM_001239 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001239.1 /DEF=Homo sapiens cyclin H (CCNH), mRNA. /FEA=mRNA /GEN=CCNH /PROD=cyclin H /DB_XREF=gi:4502622 /UG=Hs.514 cyclin H /FL=gb:BC005280.1 gb:NM_001239.1 gb:U12685.1 gb:U11791.1 NM_001239 cyclin H CCNH 902 NM_001199189 /// NM_001239 /// XM_005248627 /// XM_005248629 /// XR_427721 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006361 // transcription initiation from RNA polymerase I promoter // traceable author statement /// 0006362 // transcription elongation from RNA polymerase I promoter // traceable author statement /// 0006363 // termination of RNA polymerase I transcription // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050434 // positive regulation of viral transcription // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005675 // holo TFIIH complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // inferred from direct assay /// 0070985 // TFIIK complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein serine/threonine kinase regulator activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation 34.20 266.68 1.78 0.12 0.17 -4.56
211939_x_at 211939_x_at X74070 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X74070.1 /DEF=H.sapiens mRNA for transcription factor BTF 3. /FEA=mRNA /PROD=transcription factor BTF3 /DB_XREF=gi:395086 /UG=Hs.101025 basic transcription factor 3 X74070 basic transcription factor 3 BTF3 689 NM_001037637 /// NM_001207 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -131.97 2182.46 -1.78 0.12 0.17 -4.56
218438_s_at 218438_s_at NM_025205 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025205.1 /DEF=Homo sapiens hypothetical protein DKFZp434N185 (DKFZP434N185), mRNA. /FEA=mRNA /GEN=DKFZP434N185 /PROD=hypothetical protein DKFZp434N185 /DB_XREF=gi:13376801 /UG=Hs.33032 hypothetical protein DKFZp434N185 /FL=gb:AF317680.1 gb:NM_025205.1 NM_025205 mediator complex subunit 28 MED28 80306 NM_025205 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0051151 // negative regulation of smooth muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 29.45 160.68 1.78 0.12 0.17 -4.56
212610_at 212610_at U79291 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U79291.1 /DEF=Human clone 23721 mRNA sequence. /FEA=mRNA /DB_XREF=gi:1710271 /UG=Hs.83572 Human clone 23721 mRNA sequence U79291 protein tyrosine phosphatase, non-receptor type 11 PTPN11 5781 NM_002834 /// NM_080601 /// XM_006719526 /// XM_006719527 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from mutant phenotype /// 0007507 // heart development // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from mutant phenotype /// 0035265 // organ growth // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 0036302 // atrioventricular canal development // inferred from mutant phenotype /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038127 // ERBB signaling pathway // inferred from direct assay /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046825 // regulation of protein export from nucleus // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048609 // multicellular organismal reproductive process // inferred from electronic annotation /// 0048806 // genitalia development // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0051463 // negative regulation of cortisol secretion // inferred from electronic annotation /// 0060125 // negative regulation of growth hormone secretion // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from mutant phenotype /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060338 // regulation of type I interferon-mediated signaling pathway // traceable author statement /// 2001275 // positive regulation of glucose import in response to insulin stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // traceable author statement /// 0005070 // SH3/SH2 adaptor activity // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation /// 0031748 // D1 dopamine receptor binding // inferred from electronic annotation /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0051428 // peptide hormone receptor binding // inferred from electronic annotation 33.10 449.27 1.78 0.12 0.17 -4.56
211546_x_at 211546_x_at L36674 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L36674.1 /DEF=Human (clone 2-5) synuclein (NACP) mRNA, complete cds. /FEA=mRNA /GEN=NACP /PROD=synuclein /DB_XREF=gi:556211 /UG=Hs.76930 synuclein, alpha (non A4 component of amyloid precursor) /FL=gb:L36674.1 L36674 synuclein, alpha (non A4 component of amyloid precursor) SNCA 6622 NM_000345 /// NM_001146054 /// NM_001146055 /// NM_007308 0001774 // microglial cell activation // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001956 // positive regulation of neurotransmitter secretion // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006638 // neutral lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0007006 // mitochondrial membrane organization // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0010040 // response to iron(II) ion // inferred from direct assay /// 0010517 // regulation of phospholipase activity // inferred from direct assay /// 0010642 // negative regulation of platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0014048 // regulation of glutamate secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // traceable author statement /// 0031115 // negative regulation of microtubule polymerization // inferred from direct assay /// 0031623 // receptor internalization // inferred from direct assay /// 0031648 // protein destabilization // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032410 // negative regulation of transporter activity // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0032769 // negative regulation of monooxygenase activity // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // inferred from direct assay /// 0040012 // regulation of locomotion // inferred from electronic annotation /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // traceable author statement /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042775 // mitochondrial ATP synthesis coupled electron transport // inferred from electronic annotation /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043206 // extracellular fibril organization // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from direct assay /// 0045920 // negative regulation of exocytosis // inferred from mutant phenotype /// 0045963 // negative regulation of dopamine metabolic process // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // inferred from sequence or structural similarity /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050808 // synapse organization // inferred from electronic annotation /// 0050812 // regulation of acyl-CoA biosynthetic process // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051583 // dopamine uptake involved in synaptic transmission // traceable author statement /// 0051585 // negative regulation of dopamine uptake involved in synaptic transmission // inferred from direct assay /// 0051612 // negative regulation of serotonin uptake // inferred from direct assay /// 0051622 // negative regulation of norepinephrine uptake // inferred from direct assay /// 0055074 // calcium ion homeostasis // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from direct assay /// 0070495 // negative regulation of thrombin receptor signaling pathway // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from direct assay /// 0071280 // cellular response to copper ion // inferred from direct assay /// 0071872 // cellular response to epinephrine stimulus // traceable author statement /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 1901214 // regulation of neuron death // inferred from genetic interaction 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // traceable author statement /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016234 // inclusion body // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // inferred from direct assay /// 0043195 // terminal bouton // inferred from electronic annotation /// 0043205 // fibril // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0005504 // fatty acid binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0019894 // kinesin binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043014 // alpha-tubulin binding // inferred from physical interaction /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0045502 // dynein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from direct assay /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from direct assay /// 0060961 // phospholipase D inhibitor activity // inferred from direct assay 26.07 134.44 1.78 0.12 0.17 -4.56
208759_at 208759_at AF240468 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF240468.1 /DEF=Homo sapiens nicastrin mRNA, complete cds. /FEA=mRNA /PROD=nicastrin /DB_XREF=gi:9992877 /UG=Hs.4788 nicastrin /FL=gb:AF240468.1 AF240468 nicastrin NCSTN 23385 NM_001290184 /// NM_001290186 /// NM_015331 /// XM_005245053 0002262 // myeloid cell homeostasis // inferred from electronic annotation /// 0006508 // proteolysis // non-traceable author statement /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0016485 // protein processing // inferred from direct assay /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0031293 // membrane protein intracellular domain proteolysis // traceable author statement /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042987 // amyloid precursor protein catabolic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from sequence or structural similarity /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation -38.02 179.71 -1.78 0.12 0.17 -4.56
203594_at 203594_at NM_003729 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003729.1 /DEF=Homo sapiens RNA 3-terminal phosphate cyclase (RPC), mRNA. /FEA=mRNA /GEN=RPC /PROD=RNA 3-terminal phosphate cyclase /DB_XREF=gi:4506588 /UG=Hs.27076 RNA 3-terminal phosphate cyclase /FL=gb:NM_003729.1 NM_003729 RNA 3'-terminal phosphate cyclase RTCA 8634 NM_001130841 /// NM_003729 /// XM_005271298 /// XM_005271299 0006396 // RNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003963 // RNA-3'-phosphate cyclase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -34.02 267.84 -1.78 0.12 0.17 -4.56
214257_s_at 214257_s_at AA890010 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA890010 /FEA=EST /DB_XREF=gi:3016889 /DB_XREF=est:aj89h08.s1 /CLONE=IMAGE:1403679 /UG=Hs.50785 SEC22, vesicle trafficking protein (S. cerevisiae)-like 1 AA890010 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) SEC22B 9554 NM_004892 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 77.42 285.46 1.78 0.12 0.17 -4.56
200090_at 200090_at BG168896 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG168896 /FEA=EST /DB_XREF=gi:12675599 /DB_XREF=est:602320235F1 /CLONE=IMAGE:4415240 /UG=Hs.138381 farnesyltransferase, CAAX box, alpha BG168896 farnesyltransferase, CAAX box, alpha FNTA 2339 NM_001018676 /// NM_001018677 /// NM_002027 /// NR_033698 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0018342 // protein prenylation // inferred from electronic annotation /// 0018343 // protein farnesylation // inferred from direct assay /// 0018344 // protein geranylgeranylation // inferred from direct assay /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0090044 // positive regulation of tubulin deacetylation // inferred from direct assay /// 0090045 // positive regulation of deacetylase activity // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005953 // CAAX-protein geranylgeranyltransferase complex // inferred from direct assay /// 0005965 // protein farnesyltransferase complex // inferred from direct assay 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004660 // protein farnesyltransferase activity // inferred from direct assay /// 0004661 // protein geranylgeranyltransferase activity // inferred from direct assay /// 0004662 // CAAX-protein geranylgeranyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0008318 // protein prenyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // inferred from direct assay -54.03 647.31 -1.78 0.12 0.17 -4.56
209404_s_at 209404_s_at AF151867 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF151867.1 /DEF=Homo sapiens CGI-109 protein mRNA, complete cds. /FEA=mRNA /PROD=CGI-109 protein /DB_XREF=gi:4929686 /UG=Hs.278391 CGI-109 protein /FL=gb:AF151867.1 AF151867 transmembrane emp24 protein transport domain containing 7 /// TMED7-TICAM2 readthrough TMED7 /// TMED7-TICAM2 51014 /// 100302736 NM_001164468 /// NM_001164469 /// NM_181836 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034144 // negative regulation of toll-like receptor 4 signaling pathway // inferred from direct assay /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from direct assay /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from mutant phenotype /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035669 // TRAM-dependent toll-like receptor 4 signaling pathway // inferred from direct assay /// 0035669 // TRAM-dependent toll-like receptor 4 signaling pathway // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from mutant phenotype /// 0071650 // negative regulation of chemokine (C-C motif) ligand 5 production // inferred from mutant phenotype /// 0071651 // positive regulation of chemokine (C-C motif) ligand 5 production // inferred from mutant phenotype /// 2000494 // positive regulation of interleukin-18-mediated signaling pathway // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030126 // COPI vesicle coat // traceable author statement /// 0030127 // COPII vesicle coat // traceable author statement /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype 35.37 136.99 1.78 0.12 0.17 -4.56
209890_at 209890_at AF065389 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF065389.1 /DEF=Homo sapiens tetraspan NET-4 mRNA, complete cds. /FEA=mRNA /PROD=tetraspan NET-4 /DB_XREF=gi:3152702 /UG=Hs.20709 tetraspan 5 /FL=gb:AF065389.1 gb:NM_005723.1 AF065389 tetraspanin 5 TSPAN5 10098 NM_005723 /// XM_005262680 /// XR_244617 0045747 // positive regulation of Notch signaling pathway // inferred from mutant phenotype /// 0051604 // protein maturation // inferred from mutant phenotype /// 0090002 // establishment of protein localization to plasma membrane // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0019899 // enzyme binding // inferred from physical interaction 25.00 88.25 1.78 0.12 0.17 -4.56
214684_at 214684_at X63381 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X63381.1 /DEF=Homo sapiens mRNA for serum response factor-related protein, RSRFC4. /FEA=mRNA /GEN=RSRFC4 /PROD=serum response factor-related protein /DB_XREF=gi:432655 /UG=Hs.182280 MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A) X63381 myocyte enhancer factor 2A MEF2A 4205 NM_001130926 /// NM_001130927 /// NM_001130928 /// NM_001171894 /// NM_005587 /// XM_005254914 /// XM_005254915 /// XM_005254916 /// XM_006720509 /// XM_006720510 /// XM_006720511 /// XM_006720512 /// XM_006720513 /// XM_006720514 /// XM_006720515 /// XM_006720516 /// XM_006720517 /// XM_006720518 /// XM_006720519 /// XM_006720520 /// XM_006720521 0000002 // mitochondrial genome maintenance // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000165 // MAPK cascade // inferred from direct assay /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002467 // germinal center formation // inferred from electronic annotation /// 0002634 // regulation of germinal center formation // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0003138 // primary heart field specification // inferred from electronic annotation /// 0003139 // secondary heart field specification // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003185 // sinoatrial valve morphogenesis // inferred from electronic annotation /// 0003211 // cardiac ventricle formation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006959 // humoral immune response // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0007517 // muscle organ development // non-traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007521 // muscle cell fate determination // inferred from electronic annotation /// 0007611 // learning or memory // inferred from electronic annotation /// 0010613 // positive regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010694 // positive regulation of alkaline phosphatase activity // inferred from electronic annotation /// 0014033 // neural crest cell differentiation // inferred from electronic annotation /// 0014898 // cardiac muscle hypertrophy in response to stress // inferred from electronic annotation /// 0021542 // dentate gyrus development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030220 // platelet formation // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035051 // cardiocyte differentiation // inferred from electronic annotation /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0035984 // cellular response to trichostatin A // inferred from electronic annotation /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042100 // B cell proliferation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045652 // regulation of megakaryocyte differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048311 // mitochondrion distribution // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from sequence or structural similarity /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0055005 // ventricular cardiac myofibril assembly // inferred from sequence or structural similarity /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060025 // regulation of synaptic activity // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060297 // regulation of sarcomere organization // inferred from electronic annotation /// 0060536 // cartilage morphogenesis // inferred from electronic annotation /// 0061333 // renal tubule morphogenesis // inferred from electronic annotation /// 0061337 // cardiac conduction // inferred from sequence or structural similarity /// 0070375 // ERK5 cascade // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from direct assay /// 0071300 // cellular response to retinoic acid // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071498 // cellular response to fluid shear stress // inferred from electronic annotation /// 0071864 // positive regulation of cell proliferation in bone marrow // inferred from electronic annotation /// 0072102 // glomerulus morphogenesis // inferred from electronic annotation /// 0072160 // nephron tubule epithelial cell differentiation // inferred from electronic annotation /// 0090073 // positive regulation of protein homodimerization activity // inferred from electronic annotation /// 2000111 // positive regulation of macrophage apoptotic process // inferred from electronic annotation /// 2000727 // positive regulation of cardiac muscle cell differentiation // inferred from electronic annotation /// 2000987 // positive regulation of behavioral fear response // inferred from electronic annotation /// 2001013 // epithelial cell proliferation involved in renal tubule morphogenesis // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030017 // sarcomere // inferred from electronic annotation 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from direct assay /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0000987 // core promoter proximal region sequence-specific DNA binding // inferred from electronic annotation /// 0001046 // core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0033613 // activating transcription factor binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0071837 // HMG box domain binding // inferred from electronic annotation -36.20 108.75 -1.78 0.12 0.17 -4.56
214864_s_at 214864_s_at AK024386 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024386.1 /DEF=Homo sapiens cDNA FLJ14324 fis, clone PLACE4000100, highly similar to Homo sapiens hydroxypyruvate reductase (GRHPR) gene. /FEA=mRNA /DB_XREF=gi:10436760 /UG=Hs.155742 glyoxylate reductasehydroxypyruvate reductase AK024386 glyoxylate reductase/hydroxypyruvate reductase GRHPR 9380 NM_012203 /// XM_005251631 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0007588 // excretion // inferred from mutant phenotype /// 0008152 // metabolic process // non-traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043648 // dicarboxylic acid metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046487 // glyoxylate metabolic process // traceable author statement /// 0051259 // protein oligomerization // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0008465 // glycerate dehydrogenase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016618 // hydroxypyruvate reductase activity // inferred from direct assay /// 0030267 // glyoxylate reductase (NADP) activity // inferred from direct assay /// 0030267 // glyoxylate reductase (NADP) activity // non-traceable author statement /// 0031406 // carboxylic acid binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0048037 // cofactor binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation /// 0051287 // NAD binding // traceable author statement /// 0070402 // NADPH binding // inferred from direct assay 26.23 211.01 1.77 0.12 0.17 -4.56
201028_s_at 201028_s_at U82164 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U82164.1 /DEF=Human transmembrane protein CD99 type II mRNA, complete cds. /FEA=mRNA /GEN=CD99 /PROD=CD99 typeII /DB_XREF=gi:2149134 /UG=Hs.177543 antigen identified by monoclonal antibodies 12E7, F21 and O13 /FL=gb:BC002584.1 gb:BC003147.1 gb:M16279.1 gb:U82164.1 gb:NM_002414.1 U82164 CD99 molecule CD99 4267 NM_001122898 /// NM_001277710 /// NM_002414 /// XM_005274530 /// XM_005274532 /// XM_005274533 /// XM_005274534 /// XM_005274535 /// XM_005274794 /// XM_005274796 /// XM_005274797 /// XM_005274798 /// XM_005274799 /// XM_006724489 /// XM_006724490 /// XM_006724491 /// XM_006724870 /// XM_006724871 /// XM_006724872 0007155 // cell adhesion // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -107.35 813.48 -1.77 0.12 0.17 -4.56
203418_at 203418_at NM_001237 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001237.1 /DEF=Homo sapiens cyclin A2 (CCNA2), mRNA. /FEA=mRNA /GEN=CCNA2 /PROD=cyclin A /DB_XREF=gi:4502612 /UG=Hs.85137 cyclin A2 /FL=gb:NM_001237.1 NM_001237 cyclin A2 CCNA2 890 NM_001237 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007095 // mitotic G2 DNA damage checkpoint // traceable author statement /// 0007265 // Ras protein signal transduction // inferred from expression pattern /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033762 // response to glucagon // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0001939 // female pronucleus // inferred from electronic annotation /// 0001940 // male pronucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation -33.48 160.04 -1.77 0.12 0.17 -4.56
209174_s_at 209174_s_at BC000978 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000978.2 /DEF=Homo sapiens, hypothetical protein FLJ20259, clone MGC:5396, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein FLJ20259 /DB_XREF=gi:12803027 /UG=Hs.9956 hypothetical protein FLJ20259 /FL=gb:BC000978.2 gb:NM_017730.1 BC000978 glutamine-rich 1 QRICH1 54870 NM_017730 /// NM_198880 /// XM_005265248 /// XM_006713212 0042981 // regulation of apoptotic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 35.30 164.85 1.77 0.12 0.17 -4.56
202168_at 202168_at NM_003187 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003187.1 /DEF=Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase II, G, 32kD (TAF2G), mRNA. /FEA=mRNA /GEN=TAF2G /PROD=TATA box binding protein (TBP)-associatedfactor, RNA polymerase II, G, 32kD /DB_XREF=gi:4507350 /UG=Hs.60679 TATA box binding protein (TBP)-associated factor, RNA polymerase II, G, 32kD /FL=gb:BC003400.1 gb:NM_003187.1 gb:U21858.1 gb:U25112.1 gb:U30504.1 NM_003187 adenylate kinase 6 /// TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa AK6 /// TAF9 6880 /// 102157402 NM_001015891 /// NM_001015892 /// NM_003187 /// NM_016283 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred by curator /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046939 // nucleotide phosphorylation // inferred from direct assay /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay /// 0060760 // positive regulation of response to cytokine stimulus // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 1902166 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred by curator 0000125 // PCAF complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005654 // nucleoplasm // inferred from direct assay /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030914 // STAGA complex // inferred from direct assay /// 0033276 // transcription factor TFTC complex // inferred from direct assay /// 0070761 // pre-snoRNP complex // inferred from direct assay /// 0071339 // MLL1 complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0004017 // adenylate kinase activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0033613 // activating transcription factor binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // inferred from physical interaction 34.93 348.96 1.77 0.12 0.17 -4.56
211474_s_at 211474_s_at BC004948 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004948.1 /DEF=Homo sapiens, clone MGC:10846, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:10846) /DB_XREF=gi:13436313 /UG=Hs.41072 serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6 /FL=gb:BC004948.1 BC004948 serpin peptidase inhibitor, clade B (ovalbumin), member 6 SERPINB6 5269 NM_001195291 /// NM_001271822 /// NM_001271823 /// NM_001271824 /// NM_001271825 /// NM_004568 /// XM_005249181 /// XM_005249183 /// XM_006715112 /// XM_006715113 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0030162 // regulation of proteolysis // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -39.38 343.74 -1.77 0.12 0.17 -4.56
200002_at 200002_at NM_007209 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007209.1 /DEF=Homo sapiens ribosomal protein L35 (RPL35), mRNA. /FEA=mRNA /GEN=RPL35 /PROD=ribosomal protein L35 /DB_XREF=gi:6005859 /UG=Hs.182825 ribosomal protein L35 /FL=gb:BC000348.1 gb:U12465.1 gb:NM_007209.1 NM_007209 ribosomal protein L35 RPL35 11224 NM_007209 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003729 // mRNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -82.58 1706.29 -1.77 0.12 0.17 -4.56
208485_x_at 208485_x_at NM_003879 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003879.1 /DEF=Homo sapiens CASP8 and FADD-like apoptosis regulator (CFLAR), mRNA. /FEA=CDS /GEN=CFLAR /PROD=CASP8 and FADD-like apoptosis regulator /DB_XREF=gi:4505246 /UG=Hs.195175 CASP8 and FADD-like apoptosis regulator /FL=gb:AF041462.1 gb:NM_003879.1 NM_003879 CASP8 and FADD-like apoptosis regulator CFLAR 8837 NM_001127183 /// NM_001127184 /// NM_001202515 /// NM_001202516 /// NM_001202517 /// NM_001202518 /// NM_001202519 /// NM_003879 /// XM_005246935 /// XM_005246936 /// XM_005246937 /// XM_005246938 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0014732 // skeletal muscle atrophy // inferred from sequence or structural similarity /// 0014842 // regulation of satellite cell proliferation // inferred from sequence or structural similarity /// 0014866 // skeletal myofibril assembly // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043403 // skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0060544 // regulation of necroptotic process // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1901740 // negative regulation of myoblast fusion // inferred from sequence or structural similarity /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031264 // death-inducing signaling complex // inferred from direct assay /// 0031265 // CD95 death-inducing signaling complex // inferred from electronic annotation /// 0097342 // ripoptosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0035877 // death effector domain binding // not recorded 68.75 243.18 1.77 0.12 0.17 -4.56
203416_at 203416_at NM_000560 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000560.1 /DEF=Homo sapiens CD53 antigen (CD53), mRNA. /FEA=mRNA /GEN=CD53 /PROD=CD53 antigen /DB_XREF=gi:10834971 /UG=Hs.82212 CD53 antigen /FL=gb:NM_000560.1 gb:M60871.1 gb:M37033.1 NM_000560 CD53 molecule CD53 963 NM_000560 /// NM_001040033 /// XM_006711053 0007165 // signal transduction // non-traceable author statement /// 1901741 // positive regulation of myoblast fusion // inferred from sequence or structural similarity 0001772 // immunological synapse // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -33.92 100.41 -1.76 0.12 0.17 -4.56
201307_at 201307_at AL534972 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL534972 /FEA=EST /DB_XREF=gi:12798465 /DB_XREF=est:AL534972 /CLONE=CS0DF007YI02 (5 prime) /UG=Hs.8768 hypothetical protein FLJ10849 /FL=gb:NM_018243.1 AL534972 septin 11 SEPT11 55752 NM_018243 /// XM_005263120 /// XM_005263121 /// XM_005263122 /// XM_006714259 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation -52.72 670.89 -1.76 0.12 0.17 -4.56
218474_s_at 218474_s_at NM_018992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018992.1 /DEF=Homo sapiens hypothetical protein (FLJ20040), mRNA. /FEA=mRNA /GEN=FLJ20040 /PROD=hypothetical protein /DB_XREF=gi:9506650 /UG=Hs.61960 hypothetical protein /FL=gb:NM_018992.1 NM_018992 potassium channel tetramerization domain containing 5 KCTD5 54442 NM_018992 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay 34.80 196.97 1.76 0.12 0.17 -4.56
202333_s_at 202333_s_at AA877765 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA877765 /FEA=EST /DB_XREF=gi:2986730 /DB_XREF=est:nr06f05.s1 /CLONE=IMAGE:1161057 /UG=Hs.811 ubiquitin-conjugating enzyme E2B (RAD6 homolog) /FL=gb:M74525.1 gb:NM_003337.1 AA877765 ubiquitin-conjugating enzyme E2B UBE2B 7320 NM_003337 0000209 // protein polyubiquitination // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006281 // DNA repair // inferred from genetic interaction /// 0006301 // postreplication repair // inferred from direct assay /// 0006301 // postreplication repair // non-traceable author statement /// 0006344 // maintenance of chromatin silencing // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006513 // protein monoubiquitination // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007283 // spermatogenesis // traceable author statement /// 0007288 // sperm axoneme assembly // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009411 // response to UV // inferred from genetic interaction /// 0010845 // positive regulation of reciprocal meiotic recombination // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031056 // regulation of histone modification // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0033128 // negative regulation of histone phosphorylation // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // inferred from mutant phenotype /// 0042493 // response to drug // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043951 // negative regulation of cAMP-mediated signaling // inferred from direct assay /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0051026 // chiasma assembly // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0070076 // histone lysine demethylation // inferred from electronic annotation /// 0070193 // synaptonemal complex organization // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0000785 // chromatin // inferred from sequence or structural similarity /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0001741 // XY body // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005657 // replication fork // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033503 // HULC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -97.98 357.84 -1.76 0.12 0.17 -4.56
208727_s_at 208727_s_at BC002711 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002711.1 /DEF=Homo sapiens, cell division cycle 42 (GTP-binding protein, 25kD), clone MGC:3497, mRNA, complete cds. /FEA=mRNA /PROD=cell division cycle 42 (GTP-binding protein,25kD) /DB_XREF=gi:12803746 /UG=Hs.146409 cell division cycle 42 (GTP-binding protein, 25kD) /FL=gb:BC002711.1 gb:BC003682.1 gb:M57298.1 gb:NM_001791.1 BC002711 cell division cycle 42 CDC42 998 NM_001039802 /// NM_001791 /// NM_044472 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0003161 // cardiac conduction system development // inferred from electronic annotation /// 0003334 // keratinocyte development // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from sequence or structural similarity /// 0007088 // regulation of mitosis // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030225 // macrophage differentiation // traceable author statement /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031274 // positive regulation of pseudopodium assembly // inferred from direct assay /// 0031295 // T cell costimulation // traceable author statement /// 0031333 // negative regulation of protein complex assembly // inferred from physical interaction /// 0031424 // keratinization // inferred from electronic annotation /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0032467 // positive regulation of cytokinesis // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0043497 // regulation of protein heterodimerization activity // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0048554 // positive regulation of metalloenzyme activity // inferred from electronic annotation /// 0048664 // neuron fate determination // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051489 // regulation of filopodium assembly // inferred from direct assay /// 0051647 // nucleus localization // inferred from electronic annotation /// 0051683 // establishment of Golgi localization // inferred from sequence or structural similarity /// 0051835 // positive regulation of synapse structural plasticity // inferred from electronic annotation /// 0051988 // regulation of attachment of spindle microtubules to kinetochore // inferred from mutant phenotype /// 0060047 // heart contraction // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation /// 0060661 // submandibular salivary gland formation // inferred from electronic annotation /// 0060684 // epithelial-mesenchymal cell signaling // inferred from electronic annotation /// 0060789 // hair follicle placode formation // inferred from electronic annotation /// 0071338 // positive regulation of hair follicle cell proliferation // inferred from electronic annotation /// 0072384 // organelle transport along microtubule // inferred from sequence or structural similarity /// 0090135 // actin filament branching // inferred from electronic annotation /// 0090136 // epithelial cell-cell adhesion // inferred from electronic annotation /// 0090316 // positive regulation of intracellular protein transport // inferred from electronic annotation /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from direct assay 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030141 // secretory granule // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0051233 // spindle midzone // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from electronic annotation /// 0072686 // mitotic spindle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0034191 // apolipoprotein A-I receptor binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction -285.88 1071.49 -1.76 0.12 0.17 -4.56
212110_at 212110_at D31887 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D31887.1 /DEF=Human mRNA for KIAA0062 gene, partial cds. /FEA=mRNA /GEN=KIAA0062 /DB_XREF=gi:505101 /UG=Hs.89868 KIAA0062 protein D31887 solute carrier family 39 (zinc transporter), member 14 SLC39A14 23516 NM_001128431 /// NM_001135153 /// NM_001135154 /// NM_015359 /// XM_005273463 /// XM_005273464 /// XM_005273465 /// XM_005273466 /// XM_006716323 /// XM_006716324 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0006882 // cellular zinc ion homeostasis // inferred from direct assay /// 0015684 // ferrous iron transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0071577 // zinc ion transmembrane transport // inferred from direct assay /// 0071577 // zinc ion transmembrane transport // inferred from mutant phenotype /// 0071578 // zinc ion transmembrane import // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // inferred from direct assay /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation -32.92 276.46 -1.76 0.12 0.18 -4.56
201667_at 201667_at NM_000165 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000165.2 /DEF=Homo sapiens gap junction protein, alpha 1, 43kD (connexin 43) (GJA1), mRNA. /FEA=mRNA /GEN=GJA1 /PROD=connexin 43 /DB_XREF=gi:4755136 /UG=Hs.74471 gap junction protein, alpha 1, 43kD (connexin 43) /FL=gb:M65188.1 gb:NM_000165.2 NM_000165 gap junction protein, alpha 1, 43kDa GJA1 2697 NM_000165 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002544 // chronic inflammatory response // inferred from electronic annotation /// 0003104 // positive regulation of glomerular filtration // inferred from electronic annotation /// 0003158 // endothelium development // inferred from electronic annotation /// 0003294 // atrial ventricular junction remodeling // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007267 // cell-cell signaling // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009268 // response to pH // inferred from electronic annotation /// 0010232 // vascular transport // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010643 // cell communication by chemical coupling // inferred from electronic annotation /// 0010644 // cell communication by electrical coupling // inferred from direct assay /// 0010652 // positive regulation of cell communication by chemical coupling // inferred from electronic annotation /// 0015867 // ATP transport // inferred from electronic annotation /// 0016264 // gap junction assembly // traceable author statement /// 0030500 // regulation of bone mineralization // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043403 // skeletal muscle tissue regeneration // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045844 // positive regulation of striated muscle tissue development // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045909 // positive regulation of vasodilation // inferred from electronic annotation /// 0046850 // regulation of bone remodeling // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from direct assay /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060156 // milk ejection // inferred from electronic annotation /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060307 // regulation of ventricular cardiac muscle cell membrane repolarization // inferred from electronic annotation /// 0060371 // regulation of atrial cardiac muscle cell membrane depolarization // inferred from electronic annotation /// 0060373 // regulation of ventricular cardiac muscle cell membrane depolarization // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061337 // cardiac conduction // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0086014 // atrial cardiac muscle cell action potential // traceable author statement /// 2000810 // regulation of tight junction assembly // inferred from electronic annotation /// 2000987 // positive regulation of behavioral fear response // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // inferred from sequence or structural similarity /// 0005922 // connexon complex // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from direct assay /// 0014704 // intercalated disc // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // traceable author statement /// 0043292 // contractile fiber // inferred from electronic annotation /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005102 // receptor binding // inferred from electronic annotation /// 0005243 // gap junction channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0015075 // ion transmembrane transporter activity // traceable author statement /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0071253 // connexin binding // inferred from electronic annotation /// 0097110 // scaffold protein binding // inferred from electronic annotation 125.20 1481.47 1.76 0.12 0.18 -4.56
220240_s_at 220240_s_at NM_017905 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017905.1 /DEF=Homo sapiens hypothetical protein FLJ20623 (FLJ20623), mRNA. /FEA=mRNA /GEN=FLJ20623 /PROD=hypothetical protein FLJ20623 /DB_XREF=gi:8923574 /UG=Hs.27337 hypothetical protein FLJ20623 /FL=gb:NM_017905.1 NM_017905 transmembrane and coiled-coil domains 3 TMCO3 55002 NM_017905 /// XM_005268318 /// XM_005268319 /// XM_006719969 /// XM_006719970 /// XM_006719971 /// XM_006719972 /// XM_006719973 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:proton antiporter activity // inferred from electronic annotation 35.50 187.57 1.76 0.12 0.18 -4.56
208826_x_at 208826_x_at U27143 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U27143.1 /DEF=Human protein kinase C inhibitor-I cDNA, complete cds. /FEA=mRNA /PROD=protein kinase C inhibitor-I /DB_XREF=gi:862932 /UG=Hs.256697 histidine triad nucleotide-binding protein /FL=gb:BC001287.1 gb:U27143.1 U27143 histidine triad nucleotide binding protein 1 HINT1 3094 NM_005340 /// NR_024610 /// NR_024611 /// NR_073488 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009154 // purine ribonucleotide catabolic process // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // traceable author statement /// 0016787 // hydrolase activity // inferred from direct assay -68.65 1299.88 -1.76 0.12 0.18 -4.56
214085_x_at 214085_x_at AI912583 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI912583 /FEA=EST /DB_XREF=gi:5632438 /DB_XREF=est:we11d05.x1 /CLONE=IMAGE:2340777 /UG=Hs.154762 HIV-1 rev binding protein 2 AI912583 GLI pathogenesis-related 1 GLIPR1 11010 NM_006851 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 82.88 362.16 1.76 0.12 0.18 -4.56
209323_at 209323_at AF081567 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF081567.1 /DEF=Homo sapiens death associated protein 4 (DAP4) mRNA, complete cds. /FEA=mRNA /GEN=DAP4 /PROD=death associated protein 4 /DB_XREF=gi:9886758 /UG=Hs.177574 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) /FL=gb:AF007393.1 gb:NM_004705.1 gb:AF081567.1 AF081567 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) PRKRIR 5612 NM_004705 0006950 // response to stress // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 54.38 259.54 1.76 0.12 0.18 -4.56
214800_x_at 214800_x_at R83000 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:R83000 /FEA=EST /DB_XREF=gi:927844 /DB_XREF=est:yp87a05.s1 /CLONE=IMAGE:194384 /UG=Hs.101025 basic transcription factor 3 R83000 basic transcription factor 3 BTF3 689 NM_001037637 /// NM_001207 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 81.52 563.94 1.76 0.12 0.18 -4.56
200034_s_at 200034_s_at NM_000970 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000970.1 /DEF=Homo sapiens ribosomal protein L6 (RPL6), mRNA. /FEA=mRNA /GEN=RPL6 /PROD=ribosomal protein L6 /DB_XREF=gi:4506656 /UG=Hs.174131 ribosomal protein L6 /FL=gb:BC004138.1 gb:D17554.1 gb:NM_000970.1 gb:AF261087.1 NM_000970 ribosomal protein L6 RPL6 6128 NM_000970 /// NM_001024662 /// XM_005253920 /// XM_006719546 /// XM_006719547 /// XM_006719548 /// XM_006719549 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -186.17 2130.89 -1.76 0.12 0.18 -4.56
200773_x_at 200773_x_at NM_002823 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002823.1 /DEF=Homo sapiens prothymosin, alpha (gene sequence 28) (PTMA), mRNA. /FEA=mRNA /GEN=PTMA /PROD=prothymosin, alpha (gene sequence 28) /DB_XREF=gi:4506276 /UG=Hs.250655 prothymosin, alpha (gene sequence 28) /FL=gb:BC003510.1 gb:M26708.1 gb:M14630.1 gb:NM_002823.1 NM_002823 prothymosin, alpha PTMA 5757 NM_001099285 /// NM_002823 0006351 // transcription, DNA-templated // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 154.00 1539.78 1.75 0.12 0.18 -4.56
200079_s_at 200079_s_at AF285758 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF285758.1 /DEF=Homo sapiens lysyl-tRNA synthetase mRNA, complete cds; nuclear gene for mitochondrial product; alternatively spliced. /FEA=CDS /PROD=lysyl-tRNA synthetase /DB_XREF=gi:11095908 /UG=Hs.3100 lysyl-tRNA synthetase /FL=gb:AF285758.1 AF285758 lysyl-tRNA synthetase KARS 3735 NM_001130089 /// NM_005548 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006430 // lysyl-tRNA aminoacylation // inferred from direct assay /// 0008033 // tRNA processing // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from electronic annotation 0000049 // tRNA binding // non-traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004824 // lysine-tRNA ligase activity // inferred from direct assay /// 0004824 // lysine-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -55.12 740.61 -1.75 0.12 0.18 -4.56
213041_s_at 213041_s_at BE798517 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE798517 /FEA=EST /DB_XREF=gi:10219715 /DB_XREF=est:601583226F1 /CLONE=IMAGE:3937495 /UG=Hs.89761 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit BE798517 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit ATP5D 513 NM_001001975 /// NM_001687 0006119 // oxidative phosphorylation // non-traceable author statement /// 0006200 // ATP catabolic process // non-traceable author statement /// 0006754 // ATP biosynthetic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // non-traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046688 // response to copper ion // non-traceable author statement 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // non-traceable author statement /// 0005739 // mitochondrion // non-traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005753 // mitochondrial proton-transporting ATP synthase complex // non-traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0005524 // ATP binding // non-traceable author statement /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator /// 0043531 // ADP binding // non-traceable author statement /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 38.33 130.04 1.75 0.12 0.18 -4.56
203666_at 203666_at NM_000609 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000609.1 /DEF=Homo sapiens stromal cell-derived factor 1 (SDF1), mRNA. /FEA=mRNA /GEN=SDF1 /PROD=stromal cell-derived factor 1 /DB_XREF=gi:10834987 /UG=Hs.237356 stromal cell-derived factor 1 /FL=gb:NM_000609.1 gb:L36033.1 gb:U16752.1 NM_000609 chemokine (C-X-C motif) ligand 12 CXCL12 6387 NM_000609 /// NM_001033886 /// NM_001178134 /// NM_001277990 /// NM_199168 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007281 // germ cell development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008015 // blood circulation // traceable author statement /// 0008045 // motor neuron axon guidance // inferred from electronic annotation /// 0008064 // regulation of actin polymerization or depolymerization // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from electronic annotation /// 0009314 // response to radiation // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0022029 // telencephalon cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0033603 // positive regulation of dopamine secretion // inferred from electronic annotation /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060326 // cell chemotaxis // traceable author statement /// 0070098 // chemokine-mediated signaling pathway // inferred from direct assay /// 0090026 // positive regulation of monocyte chemotaxis // inferred from direct assay /// 0090280 // positive regulation of calcium ion import // traceable author statement /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from direct assay /// 2000107 // negative regulation of leukocyte apoptotic process // inferred from direct assay /// 2000406 // positive regulation of T cell migration // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042379 // chemokine receptor binding // inferred from mutant phenotype /// 0045236 // CXCR chemokine receptor binding // inferred from direct assay 25.75 64.15 1.75 0.12 0.18 -4.56
217860_at 217860_at NM_004544 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004544.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10 (42kD) (NDUFA10), mRNA. /FEA=mRNA /GEN=NDUFA10 /PROD=NADH dehydrogenase (ubiquinone) 1 alphasubcomplex, 10 (42kD) /DB_XREF=gi:4758767 /UG=Hs.198271 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10 (42kD) /FL=gb:BC003417.1 gb:AF087661.1 gb:NM_004544.1 NM_004544 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa NDUFA10 4705 NM_004544 /// XM_005247006 /// XM_006712543 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation -60.80 390.48 -1.75 0.12 0.18 -4.56
217733_s_at 217733_s_at NM_021103 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021103.1 /DEF=Homo sapiens thymosin, beta 10 (TMSB10), mRNA. /FEA=mRNA /GEN=TMSB10 /PROD=thymosin, beta 10 /DB_XREF=gi:10863894 /UG=Hs.76293 thymosin, beta 10 /FL=gb:NM_021103.1 gb:M92381.1 gb:M20259.1 NM_021103 thymosin beta 10 TMSB10 9168 NM_021103 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0042989 // sequestering of actin monomers // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation -541.05 4132.07 -1.75 0.12 0.18 -4.56
33132_at 33132_at U37012 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U37012:Human cleavage and polyadenylation specificity factor mRNA, complete cds /cds=(51,4379) /gb=U37012 /gi=1045573 /ug=Hs.83727 /len=4463 U37012 cleavage and polyadenylation specific factor 1, 160kDa /// microRNA 1234 /// microRNA 6849 /// microRNA 939 CPSF1 /// MIR1234 /// MIR6849 /// MIR939 29894 /// 100126351 /// 100302196 /// 102466749 NM_013291 /// NR_030635 /// NR_031600 /// NR_106908 /// XM_006716548 /// XM_006716549 /// XM_006716550 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006378 // mRNA polyadenylation // inferred from direct assay /// 0006379 // mRNA cleavage // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 44.90 164.15 1.75 0.12 0.18 -4.56
217755_at 217755_at NM_016185 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016185.1 /DEF=Homo sapiens hematological and neurological expressed 1 (HN1), mRNA. /FEA=mRNA /GEN=HN1 /PROD=hematological and neurological expressed 1 /DB_XREF=gi:7705876 /UG=Hs.109706 hematological and neurological expressed 1 /FL=gb:AF060925.1 gb:BC001420.1 gb:AF177862.1 gb:NM_016185.1 NM_016185 hematological and neurological expressed 1 HN1 51155 NM_001002032 /// NM_001002033 /// NM_001288609 /// NM_001288610 /// NM_001288611 /// NM_016185 /// NR_109933 /// XM_006721931 0005634 // nucleus // inferred from electronic annotation 38.70 443.32 1.75 0.12 0.18 -4.56
201391_at 201391_at NM_016292 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016292.1 /DEF=Homo sapiens heat shock protein 75 (TRAP1), mRNA. /FEA=mRNA /GEN=TRAP1 /PROD=tumor necrosis factor type 1 receptor associatedprotein /DB_XREF=gi:7706484 /UG=Hs.182366 heat shock protein 75 /FL=gb:BC002994.1 gb:AF154108.1 gb:NM_016292.1 NM_016292 TNF receptor-associated protein 1 TRAP1 10131 NM_001272049 /// NM_016292 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 1901856 // negative regulation of cellular respiration // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 31.10 170.38 1.75 0.12 0.18 -4.56
204050_s_at 204050_s_at NM_001833 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001833.1 /DEF=Homo sapiens clathrin, light polypeptide (Lca) (CLTA), transcript variant nonbrain, mRNA. /FEA=mRNA /GEN=CLTA /PROD=clathrin, light polypeptide A (Lca) isoform a /DB_XREF=gi:4502898 /UG=Hs.104143 clathrin, light polypeptide (Lca) /FL=gb:M20472.1 gb:NM_001833.1 NM_001833 clathrin, light chain A CLTA 1211 NM_001076677 /// NM_001184760 /// NM_001184761 /// NM_001184762 /// NM_001833 /// NM_007096 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from sequence or structural similarity /// 0030118 // clathrin coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0071439 // clathrin complex // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032050 // clathrin heavy chain binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation -37.92 717.06 -1.75 0.12 0.18 -4.56
216988_s_at 216988_s_at L48722 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:L48722 /DEF=Homo sapiens (clone hh18) protein tyrosine phosphatase (ptp-IV1r) gene, 5 end of cds /FEA=CDS /DB_XREF=gi:1246237 /UG=Hs.82911 protein tyrosine phosphatase type IVA, member 2 L48722 protein tyrosine phosphatase type IVA, member 2 PTP4A2 8073 NM_001195100 /// NM_001195101 /// NM_003479 /// NM_080391 /// NM_080392 /// XM_005271229 /// XM_005271230 /// XM_005271231 /// XM_005271232 /// XM_006710927 /// XM_006710928 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004727 // prenylated protein tyrosine phosphatase activity // traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation -100.55 708.73 -1.75 0.12 0.18 -4.56
212515_s_at 212515_s_at BG492602 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG492602 /FEA=EST /DB_XREF=gi:13454114 /DB_XREF=est:602536568F1 /CLONE=IMAGE:4655296 /UG=Hs.147916 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 3 BG492602 DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked DDX3X 1654 NM_001193416 /// NM_001193417 /// NM_001356 /// NM_024005 0002376 // immune system process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 0009615 // response to virus // inferred from direct assay /// 0010501 // RNA secondary structure unwinding // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0031333 // negative regulation of protein complex assembly // inferred from direct assay /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0032728 // positive regulation of interferon-beta production // traceable author statement /// 0034063 // stress granule assembly // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042256 // mature ribosome assembly // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045948 // positive regulation of translational initiation // inferred from mutant phenotype /// 0071243 // cellular response to arsenic-containing substance // inferred from direct assay /// 0071470 // cellular response to osmotic stress // inferred from direct assay /// 0071651 // positive regulation of chemokine (C-C motif) ligand 5 production // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004004 // ATP-dependent RNA helicase activity // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0008143 // poly(A) binding // inferred from direct assay /// 0008190 // eukaryotic initiation factor 4E binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0031369 // translation initiation factor binding // inferred from direct assay /// 0035613 // RNA stem-loop binding // inferred from direct assay /// 0043024 // ribosomal small subunit binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay -52.05 478.80 -1.74 0.12 0.18 -4.56
217028_at 217028_at AJ224869 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ224869 /DEF=Homo sapiens CXCR4 gene encoding receptor CXCR4 /FEA=mRNA /DB_XREF=gi:3059119 /UG=Hs.89414 chemokine (C-X-C motif), receptor 4 (fusin) AJ224869 chemokine (C-X-C motif) receptor 4 CXCR4 7852 NM_001008540 /// NM_003467 0000187 // activation of MAPK activity // traceable author statement /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0002407 // dendritic cell chemotaxis // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007204 // positive regulation of cytosolic calcium ion concentration // traceable author statement /// 0007281 // germ cell development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008045 // motor neuron axon guidance // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from mutant phenotype /// 0030260 // entry into host cell // traceable author statement /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042119 // neutrophil activation // inferred from electronic annotation /// 0043217 // myelin maintenance // inferred from sequence or structural similarity /// 0048699 // generation of neurons // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0050920 // regulation of chemotaxis // inferred from mutant phenotype /// 0061351 // neural precursor cell proliferation // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // inferred from electronic annotation /// 0070098 // chemokine-mediated signaling pathway // non-traceable author statement /// 0071345 // cellular response to cytokine stimulus // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004950 // chemokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015026 // coreceptor activity // traceable author statement /// 0016494 // C-X-C chemokine receptor activity // non-traceable author statement /// 0019955 // cytokine binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032027 // myosin light chain binding // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay -86.98 397.99 -1.74 0.12 0.18 -4.56
204105_s_at 204105_s_at NM_005010 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005010.1 /DEF=Homo sapiens neuronal cell adhesion molecule (NRCAM), mRNA. /FEA=mRNA /GEN=NRCAM /PROD=neuronal cell adhesion molecule /DB_XREF=gi:4826863 /UG=Hs.7912 neuronal cell adhesion molecule /FL=gb:AB002341.1 gb:NM_005010.1 NM_005010 neuronal cell adhesion molecule NRCAM 4897 NM_001037132 /// NM_001037133 /// NM_001193582 /// NM_001193583 /// NM_001193584 /// NM_005010 /// XM_005250373 /// XM_005250380 /// XM_005250383 /// XM_005250385 /// XM_006716003 /// XM_006716004 /// XM_006716005 /// XM_006716006 /// XM_006716007 /// XM_006716008 /// XM_006716009 /// XM_006716010 /// XM_006716011 /// XM_006716012 /// XM_006716013 /// XM_006716014 /// XR_428177 /// XR_428178 0001525 // angiogenesis // inferred from expression pattern /// 0001764 // neuron migration // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007409 // axonogenesis // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007413 // axonal fasciculation // non-traceable author statement /// 0007416 // synapse assembly // traceable author statement /// 0007417 // central nervous system development // non-traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0010975 // regulation of neuron projection development // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // non-traceable author statement /// 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0030516 // regulation of axon extension // non-traceable author statement /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0034113 // heterotypic cell-cell adhesion // inferred from electronic annotation /// 0045162 // clustering of voltage-gated sodium channels // inferred from direct assay /// 0045666 // positive regulation of neuron differentiation // non-traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0009897 // external side of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043005 // neuron projection // non-traceable author statement /// 0043194 // axon initial segment // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030506 // ankyrin binding // inferred from direct assay /// 0086080 // protein binding involved in heterotypic cell-cell adhesion // inferred from electronic annotation -31.65 266.02 -1.74 0.12 0.18 -4.56
209803_s_at 209803_s_at AF001294 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF001294.1 /DEF=Homo sapiens IPL (IPL) mRNA, complete cds. /FEA=mRNA /GEN=IPL /PROD=IPL /DB_XREF=gi:2150049 /UG=Hs.154036 tumor suppressing subtransferable candidate 3 /FL=gb:BC005034.1 gb:AF001294.1 gb:AF019953.1 gb:AF035444.1 gb:NM_003311.1 AF001294 pleckstrin homology-like domain, family A, member 2 PHLDA2 7262 NM_003311 0001890 // placenta development // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0070873 // regulation of glycogen metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005543 // phospholipid binding // inferred from electronic annotation 46.75 294.93 1.74 0.12 0.18 -4.56
208615_s_at 208615_s_at BF795101 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF795101 /FEA=EST /DB_XREF=gi:12100155 /DB_XREF=est:602256433F1 /CLONE=IMAGE:4339496 /UG=Hs.82911 protein tyrosine phosphatase type IVA, member 2 /FL=gb:U48297.1 gb:NM_003479.1 gb:AF208850.1 BF795101 protein tyrosine phosphatase type IVA, member 2 PTP4A2 8073 NM_001195100 /// NM_001195101 /// NM_003479 /// NM_080391 /// NM_080392 /// XM_005271229 /// XM_005271230 /// XM_005271231 /// XM_005271232 /// XM_006710927 /// XM_006710928 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004727 // prenylated protein tyrosine phosphatase activity // traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 56.85 241.80 1.74 0.12 0.18 -4.56
212506_at 212506_at AL135735 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL135735 /FEA=EST /DB_XREF=gi:6603922 /DB_XREF=est:DKFZp586N0217_s1 /CLONE=DKFZp586N0217 /UG=Hs.7885 phosphatidylinositol binding clathrin assembly protein AL135735 phosphatidylinositol binding clathrin assembly protein PICALM 8301 NM_001008660 /// NM_001206946 /// NM_001206947 /// NM_007166 /// XM_005274322 /// XM_005274323 /// XM_005274324 /// XM_005274325 /// XM_005274326 /// XM_005274327 /// XM_005274328 /// XM_005274329 /// XM_005274330 /// XM_005274331 /// XM_005274332 /// XM_005274333 /// XM_005274334 /// XM_005274335 /// XM_005274336 /// XM_005274337 /// XM_005274338 /// XM_005274340 /// XM_006718699 /// XM_006718700 /// XM_006718701 /// XM_006718702 0006461 // protein complex assembly // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0016188 // synaptic vesicle maturation // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from mutant phenotype /// 0031623 // receptor internalization // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from direct assay /// 0035459 // cargo loading into vesicle // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048261 // negative regulation of receptor-mediated endocytosis // inferred from direct assay /// 0048268 // clathrin coat assembly // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from mutant phenotype /// 0072583 // clathrin-mediated endocytosis // inferred from mutant phenotype /// 0097459 // iron ion import into cell // inferred from mutant phenotype /// 1901216 // positive regulation of neuron death // inferred from mutant phenotype /// 1902004 // positive regulation of beta-amyloid formation // inferred from mutant phenotype /// 1902959 // regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process // inferred from mutant phenotype /// 1902961 // positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process // inferred from sequence or structural similarity /// 1902963 // negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005905 // coated pit // inferred from direct assay /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // inferred from direct assay /// 0030132 // clathrin coat of coated pit // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from sequence or structural similarity /// 0042734 // presynaptic membrane // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0097418 // neurofibrillary tangle // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // 1-phosphatidylinositol binding // inferred from sequence or structural similarity /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // inferred from physical interaction /// 0030276 // clathrin binding // inferred from sequence or structural similarity /// 0032050 // clathrin heavy chain binding // inferred from direct assay /// 0035615 // clathrin adaptor activity // inferred from mutant phenotype 106.13 580.01 1.74 0.12 0.18 -4.56
200838_at 200838_at NM_001908 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001908.1 /DEF=Homo sapiens cathepsin B (CTSB), mRNA. /FEA=mRNA /GEN=CTSB /PROD=cathepsin B /DB_XREF=gi:4503138 /UG=Hs.297939 cathepsin B /FL=gb:M14221.1 gb:L16510.1 gb:NM_001908.1 NM_001908 cathepsin B CTSB 1508 NM_001908 /// NM_147780 /// NM_147781 /// NM_147782 /// NM_147783 /// XM_006716244 /// XM_006716245 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006508 // proteolysis // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // inferred from direct assay /// 0030574 // collagen catabolic process // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0042981 // regulation of apoptotic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from direct assay /// 0097067 // cellular response to thyroid hormone stimulus // inferred from expression pattern 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005622 // intracellular // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0036021 // endolysosome lumen // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043394 // proteoglycan binding // inferred from physical interaction -85.90 944.92 -1.74 0.12 0.18 -4.56
200870_at 200870_at NM_007178 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007178.1 /DEF=Homo sapiens unr-interacting protein (UNRIP), mRNA. /FEA=mRNA /GEN=UNRIP /PROD=unr-interacting protein /DB_XREF=gi:6005931 /UG=Hs.3727 unr-interacting protein /FL=gb:BC000162.1 gb:AB024327.1 gb:NM_007178.1 gb:AL136691.1 gb:AF161496.1 NM_007178 serine/threonine kinase receptor associated protein STRAP 11171 NM_007178 /// XM_005253294 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000387 // spliceosomal snRNP assembly // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010633 // negative regulation of epithelial cell migration // inferred from mutant phenotype /// 0010719 // negative regulation of epithelial to mesenchymal transition // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030277 // maintenance of gastrointestinal epithelium // inferred from mutant phenotype /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0050680 // negative regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0032797 // SMN complex // inferred from direct assay /// 0034719 // SMN-Sm protein complex // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -72.05 1059.90 -1.73 0.12 0.18 -4.56
217747_s_at 217747_s_at NM_001013 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001013.1 /DEF=Homo sapiens ribosomal protein S9 (RPS9), mRNA. /FEA=mRNA /GEN=RPS9 /PROD=ribosomal protein S9 /DB_XREF=gi:4506744 /UG=Hs.180920 ribosomal protein S9 /FL=gb:BC000802.1 gb:NM_001013.1 gb:U14971.1 NM_001013 ribosomal protein S9 RPS9 6203 NM_001013 /// XM_005259135 /// XM_005259136 /// XM_005277084 /// XM_005277085 /// XM_005277274 /// XM_005277315 /// XM_005277316 /// XM_005278287 /// XM_005278288 /// XM_006725876 /// XM_006725877 /// XM_006725964 /// XM_006725965 /// XM_006726063 /// XM_006726064 /// XM_006726164 /// XM_006726165 /// XM_006726201 /// XM_006726202 /// XR_243946 /// XR_243947 /// XR_254260 /// XR_254311 /// XR_254323 /// XR_254324 /// XR_254517 /// XR_254518 /// XR_430207 /// XR_430911 /// XR_430953 /// XR_430986 /// XR_430987 /// XR_430988 /// XR_431006 /// XR_431007 /// XR_431008 /// XR_431025 /// XR_431026 /// XR_431027 /// XR_431056 /// XR_431057 /// XR_431058 /// XR_431067 /// XR_431068 /// XR_431069 /// XR_431090 /// XR_431099 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0032456 // endocytic recycling // inferred from genetic interaction /// 0044267 // cellular protein metabolic process // traceable author statement /// 0072659 // protein localization to plasma membrane // inferred from sequence or structural similarity /// 0072659 // protein localization to plasma membrane // inferred from electronic annotation /// 1901741 // positive regulation of myoblast fusion // inferred from sequence or structural similarity /// 1901741 // positive regulation of myoblast fusion // inferred from electronic annotation /// 2001137 // positive regulation of endocytic recycling // inferred from sequence or structural similarity /// 2001137 // positive regulation of endocytic recycling // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0010008 // endosome membrane // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045182 // translation regulator activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation -225.32 1853.31 -1.73 0.12 0.18 -4.56
212765_at 212765_at AB029001 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB029001.1 /DEF=Homo sapiens mRNA for KIAA1078 protein, partial cds. /FEA=mRNA /GEN=KIAA1078 /PROD=KIAA1078 protein /DB_XREF=gi:5689492 /UG=Hs.23585 KIAA1078 protein AB029001 calmodulin regulated spectrin-associated protein family, member 2 CAMSAP2 23271 NM_203459 /// XM_005245040 /// XM_005245041 /// XM_005245042 0000226 // microtubule cytoskeleton organization // inferred from mutant phenotype /// 0033043 // regulation of organelle organization // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0051011 // microtubule minus-end binding // inferred from direct assay -38.25 287.32 -1.73 0.12 0.18 -4.56
202777_at 202777_at NM_007373 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007373.1 /DEF=Homo sapiens suppressor of clear, C. elegans, homolog of (SHOC2), mRNA. /FEA=mRNA /GEN=SHOC2 /PROD=suppressor of clear, C. elegans, homolog of /DB_XREF=gi:6677944 /UG=Hs.104315 soc-2 (suppressor of clear, C.elegans) homolog /FL=gb:AF068920.1 gb:AF054828.1 gb:AB020669.1 gb:NM_007373.1 NM_007373 soc-2 suppressor of clear homolog (C. elegans) SHOC2 8036 NM_001269039 /// NM_007373 0007265 // Ras protein signal transduction // non-traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // non-traceable author statement /// 0046579 // positive regulation of Ras protein signal transduction // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // traceable author statement 0000164 // protein phosphatase type 1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement 0005515 // protein binding // inferred from electronic annotation /// 0019888 // protein phosphatase regulator activity // traceable author statement /// 0019903 // protein phosphatase binding // inferred from direct assay -25.88 250.81 -1.73 0.13 0.18 -4.56
208837_at 208837_at BC000027 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000027.1 /DEF=Homo sapiens, integral type I protein, clone MGC:1302, mRNA, complete cds. /FEA=mRNA /PROD=integral type I protein /DB_XREF=gi:12652570 /UG=Hs.179516 integral type I protein /FL=gb:BC000027.1 gb:NM_007364.1 BC000027 transmembrane emp24 protein transport domain containing 3 TMED3 23423 NM_007364 /// XM_005254263 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation 48.32 264.24 1.73 0.13 0.18 -4.56
212058_at 212058_at AI184562 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI184562 /FEA=EST /DB_XREF=gi:3735200 /DB_XREF=est:qd60b05.x1 /CLONE=IMAGE:1733841 /UG=Hs.7976 KIAA0332 protein AI184562 U2 snRNP-associated SURP domain containing U2SURP 23350 NM_001080415 /// XM_005247246 /// XM_005247248 /// XM_005247249 0006396 // RNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -43.72 362.81 -1.73 0.13 0.18 -4.56
212857_x_at 212857_x_at BG231551 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG231551 /FEA=EST /DB_XREF=gi:12726658 /DB_XREF=est:naf29h05.x1 /CLONE=IMAGE:4142457 /UG=Hs.74861 activated RNA polymerase II transcription cofactor 4 BG231551 SUB1 homolog (S. cerevisiae) SUB1 10923 NM_006713 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 196.67 957.66 1.73 0.13 0.18 -4.56
200853_at 200853_at NM_002106 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002106.1 /DEF=Homo sapiens H2A histone family, member Z (H2AFZ), mRNA. /FEA=mRNA /GEN=H2AFZ /PROD=H2A histone family, member Z /DB_XREF=gi:4504254 /UG=Hs.119192 H2A histone family, member Z /FL=gb:M37583.1 gb:NM_002106.1 NM_002106 H2A histone family, member Z H2AFZ 3015 NM_002106 /// XM_005262971 0006334 // nucleosome assembly // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0071392 // cellular response to estradiol stimulus // inferred from mutant phenotype 0000786 // nucleosome // inferred from electronic annotation /// 0001740 // Barr body // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 150.65 1269.42 1.72 0.13 0.18 -4.56
208846_s_at 208846_s_at U90943 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U90943.1 /DEF=Human voltage dependent anion channel form 3 mRNA, complete cds. /FEA=mRNA /PROD=voltage dependent anion channel form 3 /DB_XREF=gi:2735306 /UG=Hs.7381 voltage-dependent anion channel 3 /FL=gb:BC002456.1 gb:U90943.1 gb:AF038962.1 gb:NM_005662.1 U90943 voltage-dependent anion channel 3 VDAC3 7419 NM_001135694 /// NM_005662 /// XM_006716394 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0015853 // adenine transport // traceable author statement /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0046930 // pore complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0008308 // voltage-gated anion channel activity // traceable author statement /// 0015288 // porin activity // inferred from electronic annotation 61.80 207.03 1.72 0.13 0.18 -4.56
200089_s_at 200089_s_at AI953886 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI953886 /FEA=EST /DB_XREF=gi:5746196 /DB_XREF=est:wx70g02.x1 /CLONE=IMAGE:2549042 /UG=Hs.286 ribosomal protein L4 AI953886 ribosomal protein L4 /// small nucleolar RNA, C/D box 16 /// small nucleolar RNA, C/D box 18A /// small nucleolar RNA, C/D box 18B /// small nucleolar RNA, C/D box 18C RPL4 /// SNORD16 /// SNORD18A /// SNORD18B /// SNORD18C 6124 /// 595097 /// 595098 /// 595099 /// 595100 NM_000968 /// NR_002440 /// NR_002441 /// NR_002442 /// NR_002443 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -149.83 1803.66 -1.72 0.13 0.18 -4.56
200679_x_at 200679_x_at BE311760 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE311760 /FEA=EST /DB_XREF=gi:9148272 /DB_XREF=est:601143587F1 /CLONE=IMAGE:3507284 /UG=Hs.274472 high-mobility group (nonhistone chromosomal) protein 1 /FL=gb:BC003378.1 gb:NM_002128.1 gb:D63874.1 BE311760 high mobility group box 1 HMGB1 3146 NM_002128 /// XM_005266363 /// XM_005266365 /// XM_005266368 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001773 // myeloid dendritic cell activation // inferred from sequence or structural similarity /// 0002407 // dendritic cell chemotaxis // inferred from sequence or structural similarity /// 0002437 // inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006265 // DNA topological change // inferred from sequence or structural similarity /// 0006288 // base-excision repair, DNA ligation // inferred from direct assay /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006310 // DNA recombination // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from direct assay /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0033151 // V(D)J recombination // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from sequence or structural similarity /// 0051103 // DNA ligation involved in DNA repair // inferred from sequence or structural similarity /// 2000426 // negative regulation of apoptotic cell clearance // inferred from electronic annotation 0000793 // condensed chromosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from sequence or structural similarity /// 0003690 // double-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008301 // DNA binding, bending // inferred from mutant phenotype /// 0008301 // DNA binding, bending // inferred from sequence or structural similarity /// 0042056 // chemoattractant activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050786 // RAGE receptor binding // inferred from sequence or structural similarity /// 0070491 // repressing transcription factor binding // inferred from physical interaction -64.57 564.89 -1.72 0.13 0.18 -4.56
200919_at 200919_at NM_004427 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004427.1 /DEF=Homo sapiens early development regulator 2 (homolog of polyhomeotic 2) (EDR2), mRNA. /FEA=mRNA /GEN=EDR2 /PROD=early development regulator 2 /DB_XREF=gi:4758241 /UG=Hs.75878 early development regulator 2 (homolog of polyhomeotic 2) /FL=gb:U89278.1 gb:NM_004427.1 NM_004427 polyhomeotic homolog 2 (Drosophila) PHC2 1912 NM_004427 /// NM_198040 /// XM_005270568 /// XM_005270570 /// XM_005270571 /// XM_005270572 /// XM_006710401 /// XM_006710402 /// XM_006710403 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay /// 0035102 // PRC1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -67.05 366.62 -1.72 0.13 0.18 -4.56
201581_at 201581_at BF572868 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF572868 /FEA=EST /DB_XREF=gi:11646580 /DB_XREF=est:602079440F2 /CLONE=IMAGE:4254176 /UG=Hs.169358 hypothetical protein /FL=gb:NM_021156.1 BF572868 thioredoxin-related transmembrane protein 4 TMX4 56255 NM_021156 0006457 // protein folding // not recorded /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // not recorded 21.65 132.25 1.72 0.13 0.18 -4.56
200001_at 200001_at NM_001749 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001749.1 /DEF=Homo sapiens calpain 4, small subunit (30K) (CAPN4), mRNA. /FEA=mRNA /GEN=CAPN4 /PROD=calpain 4 small subunit /DB_XREF=gi:4502564 /UG=Hs.74451 calpain 4, small subunit (30K) /FL=gb:BC000592.1 gb:NM_001749.1 NM_001749 calpain, small subunit 1 CAPNS1 826 NM_001003962 /// NM_001749 /// XM_005259295 /// XM_005259296 /// XM_005259297 0006508 // proteolysis // not recorded /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -135.22 1063.69 -1.72 0.13 0.18 -4.56
215596_s_at 215596_s_at AL163248 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL163248 /DEF=Homo sapiens chromosome 21 segment HS21C048 /FEA=mRNA_2 /DB_XREF=gi:7717304 /UG=Hs.288773 zinc finger protein 294 AL163248 listerin E3 ubiquitin protein ligase 1 LTN1 26046 NM_015565 /// XM_006723987 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 27.85 160.85 1.72 0.13 0.18 -4.56
203282_at 203282_at NM_000158 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000158.1 /DEF=Homo sapiens glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV) (GBE1), mRNA. /FEA=mRNA /GEN=GBE1 /PROD=glucan (1,4-alpha-), branching enzyme 1(glycogen branching enzyme) /DB_XREF=gi:4557618 /UG=Hs.1691 glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV) /FL=gb:L07956.1 gb:NM_000158.1 NM_000158 glucan (1,4-alpha-), branching enzyme 1 GBE1 2632 NM_000158 0005975 // carbohydrate metabolic process // traceable author statement /// 0005977 // glycogen metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003844 // 1,4-alpha-glucan branching enzyme activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 38.15 816.52 1.72 0.13 0.18 -4.56
202189_x_at 202189_x_at NM_002819 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002819.1 /DEF=Homo sapiens polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) (PTB), mRNA. /FEA=mRNA /GEN=PTB /PROD=polypyrimidine tract binding protein(heterogeneous nuclear ribonucleoprotein I) /DB_XREF=gi:4506242 /UG=Hs.172550 polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) /FL=gb:NM_002819.1 NM_002819 microRNA 4745 /// polypyrimidine tract binding protein 1 MIR4745 /// PTBP1 5725 /// 100616459 NM_002819 /// NM_031990 /// NM_031991 /// NM_175847 /// NR_039900 /// XM_005259597 /// XM_005259598 /// XR_244034 /// XR_244035 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051148 // negative regulation of muscle cell differentiation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008187 // poly-pyrimidine tract binding // traceable author statement /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 87.85 730.40 1.72 0.13 0.18 -4.56
201799_s_at 201799_s_at AI927993 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI927993 /FEA=EST /DB_XREF=gi:5663957 /DB_XREF=est:wo92c11.x1 /CLONE=IMAGE:2462804 /UG=Hs.24734 oxysterol binding protein /FL=gb:AF185696.1 gb:M86917.1 gb:NM_002556.1 AI927993 oxysterol binding protein OSBP 5007 NM_002556 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay 0005543 // phospholipid binding // inferred from electronic annotation /// 0008142 // oxysterol binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation -32.45 128.08 -1.72 0.13 0.18 -4.56
210428_s_at 210428_s_at AF260566 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF260566.1 /DEF=Homo sapiens hepatocyte growth factor-regulated tyrosine kinase substrate HRS isoform 2 (HRS) mRNA, complete cds. /FEA=mRNA /GEN=HRS /PROD=hepatocyte growth factor-regulated tyrosinekinase substrate HRS isoform 2 /DB_XREF=gi:9022388 /UG=Hs.24756 hepatocyte growth factor-regulated tyrosine kinase substrate /FL=gb:AF260566.1 AF260566 hepatocyte growth factor-regulated tyrosine kinase substrate HGS 9146 NM_004712 /// XM_005257794 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016197 // endosomal transport // non-traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042176 // regulation of protein catabolic process // traceable author statement /// 0046426 // negative regulation of JAK-STAT cascade // inferred from direct assay /// 0061024 // membrane organization // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0032585 // multivesicular body membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 40.80 357.88 1.72 0.13 0.18 -4.56
212352_s_at 212352_s_at BE780075 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE780075 /FEA=EST /DB_XREF=gi:10201273 /DB_XREF=est:601469954F1 /CLONE=IMAGE:3873157 /UG=Hs.74137 transmembrane trafficking protein BE780075 transmembrane emp24-like trafficking protein 10 (yeast) TMED10 10972 NM_006827 0001101 // response to acid // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from direct assay /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0007030 // Golgi organization // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0034205 // beta-amyloid formation // inferred from mutant phenotype /// 0035459 // cargo loading into vesicle // traceable author statement /// 0035964 // COPI-coated vesicle budding // inferred from direct assay /// 0043279 // response to alkaloid // inferred from electronic annotation /// 0045055 // regulated secretory pathway // inferred from sequence or structural similarity /// 0048199 // vesicle targeting, to, from or within Golgi // inferred from sequence or structural similarity /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0051259 // protein oligomerization // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0030137 // COPI-coated vesicle // inferred from sequence or structural similarity /// 0030140 // trans-Golgi network transport vesicle // inferred from sequence or structural similarity /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0030667 // secretory granule membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070765 // gamma-secretase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation 72.20 832.00 1.72 0.13 0.18 -4.56
209044_x_at 209044_x_at BC004273 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004273.1 /DEF=Homo sapiens, splicing factor 3b, subunit 4, 49kD, clone MGC:10828, mRNA, complete cds. /FEA=mRNA /PROD=splicing factor 3b, subunit 4, 49kD /DB_XREF=gi:13279088 /UG=Hs.25797 splicing factor 3b, subunit 4, 49kD /FL=gb:BC004273.1 gb:NM_005850.1 BC004273 splicing factor 3b, subunit 4, 49kDa SF3B4 10262 NM_005850 /// XM_005277331 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 35.15 181.80 1.72 0.13 0.18 -4.56
208191_x_at 208191_x_at NM_002780 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002780.1 /DEF=Homo sapiens pregnancy specific beta-1-glycoprotein 4 (PSG4), mRNA. /FEA=mRNA /GEN=PSG4 /PROD=pregnancy specific beta-1-glycoprotein 4 /DB_XREF=gi:4506170 /UG=Hs.278423 pregnancy specific beta-1-glycoprotein 4 /FL=gb:NM_002780.1 gb:U18469.1 NM_002780 pregnancy specific beta-1-glycoprotein 4 PSG4 5672 NM_001276495 /// NM_002780 /// NM_213633 /// XM_005259069 /// XM_005259073 0006952 // defense response // non-traceable author statement /// 0007565 // female pregnancy // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 30.38 76.01 1.72 0.13 0.18 -4.56
217788_s_at 217788_s_at NM_004481 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004481.2 /DEF=Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) (GALNT2), mRNA. /FEA=mRNA /GEN=GALNT2 /PROD=polypeptide N-acetylgalactosaminyltransferase 2 /DB_XREF=gi:9945385 /UG=Hs.130181 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) /FL=gb:NM_004481.2 NM_004481 polypeptide N-acetylgalactosaminyltransferase 2 GALNT2 2590 NM_001291866 /// NM_004481 /// NR_120373 0002378 // immunoglobulin biosynthetic process // inferred from direct assay /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0016266 // O-glycan processing // traceable author statement /// 0018242 // protein O-linked glycosylation via serine // inferred from direct assay /// 0018243 // protein O-linked glycosylation via threonine // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // non-traceable author statement /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 57.90 415.35 1.71 0.13 0.19 -4.56
218539_at 218539_at NM_017943 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017943.1 /DEF=Homo sapiens hypothetical protein FLJ20725 (FLJ20725), mRNA. /FEA=mRNA /GEN=FLJ20725 /PROD=hypothetical protein FLJ20725 /DB_XREF=gi:8923650 /UG=Hs.15467 hypothetical protein FLJ20725 /FL=gb:NM_017943.1 NM_017943 F-box protein 34 FBXO34 55030 NM_017943 /// NM_152231 /// XM_005267791 /// XM_006720185 0005515 // protein binding // inferred from electronic annotation 25.50 180.93 1.71 0.13 0.19 -4.56
206918_s_at 206918_s_at NM_003915 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003915.1 /DEF=Homo sapiens copine I (CPNE1), mRNA. /FEA=mRNA /GEN=CPNE1 /PROD=copine I /DB_XREF=gi:4503012 /UG=Hs.166887 copine I /FL=gb:U83246.1 gb:NM_003915.1 NM_003915 copine I CPNE1 8904 NM_001198863 /// NM_003915 /// NM_152925 /// NM_152926 /// NM_152927 /// NM_152928 /// NM_152930 /// NM_152931 /// NR_037188 0006629 // lipid metabolic process // traceable author statement /// 0016192 // vesicle-mediated transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001786 // phosphatidylserine binding // inferred from direct assay /// 0005215 // transporter activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // traceable author statement -28.20 202.80 -1.71 0.13 0.19 -4.56
200830_at 200830_at NM_002808 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002808.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 (PSMD2), mRNA. /FEA=mRNA /GEN=PSMD2 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 2 /DB_XREF=gi:4506226 /UG=Hs.74619 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 /FL=gb:D78151.1 gb:BC002368.1 gb:BC002997.1 gb:NM_002808.1 gb:U18247.1 gb:U12596.1 NM_002808 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 PSMD2 5708 NM_001278708 /// NM_001278709 /// NM_002808 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred from electronic annotation 106.75 647.80 1.71 0.13 0.19 -4.56
202275_at 202275_at NM_000402 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000402.1 /DEF=Homo sapiens glucose-6-phosphate dehydrogenase (G6PD), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=G6PD /PROD=glucose-6-phosphate dehydrogenase /DB_XREF=gi:4503844 /UG=Hs.80206 glucose-6-phosphate dehydrogenase /FL=gb:BC000337.1 gb:M21248.1 gb:NM_000402.1 NM_000402 glucose-6-phosphate dehydrogenase G6PD 2539 NM_000402 /// NM_001042351 /// XM_005274657 /// XM_005274658 0001816 // cytokine production // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0006629 // lipid metabolic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006739 // NADP metabolic process // inferred from direct assay /// 0006740 // NADPH regeneration // inferred from mutant phenotype /// 0006749 // glutathione metabolic process // inferred from mutant phenotype /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from mutant phenotype /// 0010734 // negative regulation of protein glutathionylation // inferred from mutant phenotype /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0019322 // pentose biosynthetic process // inferred from direct assay /// 0021762 // substantia nigra development // inferred from expression pattern /// 0032094 // response to food // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from mutant phenotype /// 0043249 // erythrocyte maturation // inferred from mutant phenotype /// 0043523 // regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046390 // ribose phosphate biosynthetic process // inferred from mutant phenotype /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from direct assay /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005536 // glucose binding // inferred from direct assay /// 0005536 // glucose binding // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0050661 // NADP binding // inferred from direct assay -32.55 209.57 -1.71 0.13 0.19 -4.56
210427_x_at 210427_x_at BC001388 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001388.1 /DEF=Homo sapiens, annexin A2, clone MGC:2257, mRNA, complete cds. /FEA=mRNA /PROD=annexin A2 /DB_XREF=gi:12655074 /UG=Hs.217493 annexin A2 /FL=gb:BC001388.1 BC001388 annexin A2 ANXA2 302 NM_001002857 /// NM_001002858 /// NM_001136015 /// NM_004039 0001525 // angiogenesis // inferred from expression pattern /// 0001765 // membrane raft assembly // inferred from mutant phenotype /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0006900 // membrane budding // inferred from mutant phenotype /// 0007589 // body fluid secretion // inferred from electronic annotation /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // inferred from direct assay /// 0036035 // osteoclast development // inferred from direct assay /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0051099 // positive regulation of binding // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0071229 // cellular response to acid // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019897 // extrinsic component of plasma membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031902 // late endosome membrane // inferred from direct assay /// 0031982 // vesicle // inferred from electronic annotation /// 0035749 // myelin sheath adaxonal region // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0044354 // macropinosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from mutant phenotype /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0044548 // S100 protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -569.70 4067.20 -1.71 0.13 0.19 -4.56
203109_at 203109_at NM_003969 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003969.1 /DEF=Homo sapiens ubiquitin-conjugating enzyme E2M (homologous to yeast UBC12) (UBE2M), mRNA. /FEA=mRNA /GEN=UBE2M /PROD=ubiquitin-conjugating enzyme E2M (homologous toyeast UBC12) /DB_XREF=gi:4507790 /UG=Hs.200478 ubiquitin-conjugating enzyme E2M (homologous to yeast UBC12) /FL=gb:AF075599.1 gb:AB012191.1 gb:NM_003969.1 NM_003969 ubiquitin-conjugating enzyme E2M UBE2M 9040 NM_003969 0006464 // cellular protein modification process // inferred from mutant phenotype /// 0006464 // cellular protein modification process // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0016567 // protein ubiquitination // traceable author statement /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0045116 // protein neddylation // inferred from direct assay /// 0045116 // protein neddylation // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0018169 // ribosomal S6-glutamic acid ligase activity // inferred from direct assay /// 0019788 // NEDD8 ligase activity // inferred from direct assay -52.25 216.80 -1.71 0.13 0.19 -4.56
205849_s_at 205849_s_at NM_006294 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006294.1 /DEF=Homo sapiens ubiquinol-cytochrome c reductase binding protein (UQCRB), mRNA. /FEA=mRNA /GEN=UQCRB /PROD=ubiquinol-cytochrome c reductase bindingprotein /DB_XREF=gi:5454151 /UG=Hs.131255 ubiquinol-cytochrome c reductase binding protein /FL=gb:M22348.1 gb:NM_006294.1 NM_006294 ubiquinol-cytochrome c reductase binding protein UQCRB 7381 NM_001199975 /// NM_001254752 /// NM_006294 /// NR_045639 /// XM_006716652 0006119 // oxidative phosphorylation // traceable author statement /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0009060 // aerobic respiration // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // traceable author statement /// 0005750 // mitochondrial respiratory chain complex III // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 139.15 1125.35 1.71 0.13 0.19 -4.56
201597_at 201597_at NM_001865 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001865.1 /DEF=Homo sapiens cytochrome c oxidase subunit VIIa polypeptide 2 (liver) (COX7A2), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=COX7A2 /PROD=cytochrome c oxidase subunit VIIa polypeptide 2(liver) /DB_XREF=gi:4502988 /UG=Hs.70312 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) /FL=gb:NM_001865.1 NM_001865 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) COX7A2 1347 NM_001865 /// NR_029466 /// XM_006715335 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005746 // mitochondrial respiratory chain // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation 155.67 1194.19 1.70 0.13 0.19 -4.56
221958_s_at 221958_s_at AA775681 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA775681 /FEA=EST /DB_XREF=gi:2835015 /DB_XREF=est:zf31a02.s1 /CLONE=IMAGE:378506 /UG=Hs.250746 hypothetical protein FLJ23091 AA775681 wntless Wnt ligand secretion mediator WLS 79971 NM_001002292 /// NM_001193334 /// NM_024911 0001707 // mesoderm formation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0031937 // positive regulation of chromatin silencing // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // inferred from electronic annotation 39.22 227.96 1.70 0.13 0.19 -4.56
207791_s_at 207791_s_at NM_004161 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004161.1 /DEF=Homo sapiens RAB1, member RAS oncogene family (RAB1), mRNA. /FEA=mRNA /GEN=RAB1 /PROD=RAB1, member RAS oncogene family /DB_XREF=gi:4758987 /UG=Hs.3642 RAB1, member RAS oncogene family /FL=gb:NM_004161.1 gb:M28209.1 NM_004161 RAB1A, member RAS oncogene family RAB1A 5861 NM_004161 /// NM_015543 /// XM_005264468 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016477 // cell migration // inferred from mutant phenotype /// 0030252 // growth hormone secretion // inferred from mutant phenotype /// 0042742 // defense response to bacterium // inferred from mutant phenotype /// 0047496 // vesicle transport along microtubule // inferred from mutant phenotype /// 0072606 // interleukin-8 secretion // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 37.50 289.43 1.70 0.13 0.19 -4.56
212530_at 212530_at AL080111 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080111.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586G2222 (from clone DKFZp586G2222). /FEA=mRNA /DB_XREF=gi:5262538 /UG=Hs.24119 Homo sapiens mRNA; cDNA DKFZp586G2222 (from clone DKFZp586G2222) AL080111 NIMA-related kinase 7 NEK7 140609 NM_133494 0000910 // cytokinesis // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007346 // regulation of mitotic cell cycle // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051225 // spindle assembly // traceable author statement 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 28.92 236.74 1.70 0.13 0.19 -4.56
202806_at 202806_at NM_004395 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004395.1 /DEF=Homo sapiens drebrin 1 (DBN1), mRNA. /FEA=mRNA /GEN=DBN1 /PROD=drebrin 1 /DB_XREF=gi:4758123 /UG=Hs.89434 drebrin 1 /FL=gb:BC000283.1 gb:U00802.1 gb:NM_004395.1 gb:D17530.1 NM_004395 drebrin 1 DBN1 1627 NM_004395 /// NM_080881 /// XM_005265827 /// XM_005265828 /// XM_005265829 /// XM_006714826 0007015 // actin filament organization // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010643 // cell communication by chemical coupling // inferred from electronic annotation /// 0010644 // cell communication by electrical coupling // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032507 // maintenance of protein location in cell // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement /// 0048699 // generation of neurons // inferred from electronic annotation /// 0050773 // regulation of dendrite development // non-traceable author statement /// 0061351 // neural precursor cell proliferation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // non-traceable author statement /// 0042641 // actomyosin // non-traceable author statement 0003779 // actin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005522 // profilin binding // inferred from sequence or structural similarity 98.00 298.77 1.70 0.13 0.19 -4.56
207469_s_at 207469_s_at NM_003662 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003662.1 /DEF=Homo sapiens Pirin (PIR), mRNA. /FEA=mRNA /GEN=PIR /PROD=pirin /DB_XREF=gi:4505822 /UG=Hs.279663 Pirin /FL=gb:NM_003662.1 NM_003662 pirin (iron-binding nuclear protein) PIR 8544 NM_001018109 /// NM_003662 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003712 // transcription cofactor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008127 // quercetin 2,3-dioxygenase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from direct assay /// 0051213 // dioxygenase activity // inferred from electronic annotation 52.15 340.02 1.70 0.13 0.19 -4.56
200871_s_at 200871_s_at NM_002778 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002778.1 /DEF=Homo sapiens prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) (PSAP), mRNA. /FEA=mRNA /GEN=PSAP /PROD=prosaposin (variant Gaucher disease and variantmetachromatic leukodystrophy) /DB_XREF=gi:11386146 /UG=Hs.78575 prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) /FL=gb:NM_002778.1 gb:BC004275.1 gb:J03077.1 gb:D00422.1 gb:M60255.1 gb:M32221.1 gb:M60257.1 gb:M60258.1 gb:M81355.1 NM_002778 prosaposin PSAP 5660 NM_001042465 /// NM_001042466 /// NM_002778 0002576 // platelet degranulation // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0006869 // lipid transport // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0019216 // regulation of lipid metabolic process // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0043408 // regulation of MAPK cascade // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048589 // developmental growth // inferred from electronic annotation /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016021 // integral component of membrane // traceable author statement /// 0043202 // lysosomal lumen // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // traceable author statement /// 0008289 // lipid binding // traceable author statement -365.67 1158.19 -1.70 0.13 0.19 -4.56
212386_at 212386_at BF592782 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF592782 /FEA=EST /DB_XREF=gi:11685106 /DB_XREF=est:7j94d06.x1 /CLONE=IMAGE:3442594 /UG=Hs.289068 Homo sapiens cDNA FLJ11918 fis, clone HEMBB1000272 BF592782 transcription factor 4 TCF4 6925 NM_001083962 /// NM_001243226 /// NM_001243227 /// NM_001243228 /// NM_001243230 /// NM_001243231 /// NM_001243232 /// NM_001243233 /// NM_001243234 /// NM_001243235 /// NM_001243236 /// NM_003199 /// XM_005266739 /// XM_005266741 /// XM_005266743 /// XM_005266744 /// XM_005266745 /// XM_005266746 /// XM_005266747 /// XM_005266749 /// XM_005266750 /// XM_005266752 /// XM_005266754 /// XM_005266755 /// XM_005266761 /// XM_006722529 /// XM_006722530 /// XM_006722531 /// XM_006722532 /// XM_006722533 /// XM_006722534 /// XM_006722535 /// XM_006722536 /// XM_006722537 /// XM_006722538 /// XM_006722539 /// XM_006722540 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0065004 // protein-DNA complex assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001011 // sequence-specific DNA binding RNA polymerase recruiting transcription factor activity // inferred from sequence or structural similarity /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from sequence or structural similarity /// 0001087 // TFIIB-class binding transcription factor activity // inferred from sequence or structural similarity /// 0001093 // TFIIB-class transcription factor binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity -129.95 942.98 -1.70 0.13 0.19 -4.56
219436_s_at 219436_s_at NM_016242 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016242.1 /DEF=Homo sapiens endomucin-2 (LOC51705), mRNA. /FEA=mRNA /GEN=LOC51705 /PROD=endomucin-2 /DB_XREF=gi:7706452 /UG=Hs.41135 endomucin-2 /FL=gb:AB034695.1 gb:NM_016242.1 gb:AF205940.1 NM_016242 endomucin EMCN 51705 NM_001159694 /// NM_016242 /// XM_005263059 /// XM_005263061 0001525 // angiogenesis // inferred from expression pattern /// 0016337 // single organismal cell-cell adhesion // inferred from direct assay /// 0030155 // regulation of cell adhesion // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred by curator /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0030246 // carbohydrate binding // inferred from direct assay 40.70 300.55 1.70 0.13 0.19 -4.56
201078_at 201078_at NM_004800 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004800.1 /DEF=Homo sapiens transmembrane 9 superfamily member 2 (TM9SF2), mRNA. /FEA=mRNA /GEN=TM9SF2 /PROD=transmembrane 9 superfamily member 2 /DB_XREF=gi:4758873 /UG=Hs.28757 transmembrane 9 superfamily member 2 /FL=gb:U81006.1 gb:NM_004800.1 NM_004800 transmembrane 9 superfamily member 2 TM9SF2 9375 NM_004800 0006810 // transport // traceable author statement 0005768 // endosome // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 107.95 708.30 1.70 0.13 0.19 -4.56
200817_x_at 200817_x_at NM_001014 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001014.1 /DEF=Homo sapiens ribosomal protein S10 (RPS10), mRNA. /FEA=mRNA /GEN=RPS10 /PROD=ribosomal protein S10 /DB_XREF=gi:4506678 /UG=Hs.76230 ribosomal protein S10 /FL=gb:BC001032.1 gb:BC001955.1 gb:BC005012.1 gb:NM_001014.1 gb:U14972.1 NM_001014 ribosomal protein S10 RPS10 6204 NM_001014 /// NM_001203245 /// NM_001204091 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -868.27 5111.46 -1.70 0.13 0.19 -4.56
212662_at 212662_at BE615277 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE615277 /FEA=EST /DB_XREF=gi:9896876 /DB_XREF=est:601280637F1 /CLONE=IMAGE:3622736 /UG=Hs.171844 Homo sapiens cDNA: FLJ22296 fis, clone HRC04468 BE615277 poliovirus receptor PVR 5817 NM_001135768 /// NM_001135769 /// NM_001135770 /// NM_006505 /// XM_005259120 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0045216 // cell-cell junction organization // traceable author statement /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0050776 // regulation of immune response // traceable author statement /// 0060370 // susceptibility to T cell mediated cytotoxicity // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from physical interaction -35.72 133.39 -1.69 0.13 0.19 -4.56
201526_at 201526_at NM_001662 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001662.2 /DEF=Homo sapiens ADP-ribosylation factor 5 (ARF5), mRNA. /FEA=mRNA /GEN=ARF5 /PROD=ADP-ribosylation factor 5 /DB_XREF=gi:6995999 /UG=Hs.77541 ADP-ribosylation factor 5 /FL=gb:BC003043.1 gb:M57567.1 gb:NM_001662.2 NM_001662 ADP-ribosylation factor 5 ARF5 381 NM_001662 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation 38.83 274.79 1.69 0.13 0.19 -4.56
202025_x_at 202025_x_at NM_001607 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001607.2 /DEF=Homo sapiens acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase) (ACAA1), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=ACAA1 /PROD=acetyl-Coenzyme A acyltransferase 1 /DB_XREF=gi:6598316 /UG=Hs.166160 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase) /FL=gb:BC000635.1 gb:NM_001607.2 NM_001607 acetyl-CoA acyltransferase 1 ACAA1 30 NM_001130410 /// NM_001607 /// NR_024024 /// XM_006713122 /// XM_006713123 0000038 // very long-chain fatty acid metabolic process // inferred from mutant phenotype /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // inferred from mutant phenotype /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // traceable author statement /// 0033559 // unsaturated fatty acid metabolic process // traceable author statement /// 0036109 // alpha-linolenic acid metabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005777 // peroxisome // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016401 // palmitoyl-CoA oxidase activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 20.23 97.34 1.69 0.13 0.19 -4.56
207980_s_at 207980_s_at NM_006079 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006079.1 /DEF=Homo sapiens Cbpp300-interacting transactivator, with GluAsp-rich carboxy-terminal domain, 2 (CITED2), mRNA. /FEA=mRNA /GEN=CITED2 /PROD=Cbpp300-interacting transactivator, withGluAsp-rich carboxy-terminal domain, 2 /DB_XREF=gi:5174416 /UG=Hs.82071 Cbpp300-interacting transactivator, with GluAsp-rich carboxy-terminal domain, 2 /FL=gb:U65093.1 gb:NM_006079.1 NM_006079 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 CITED2 10370 NM_001168388 /// NM_001168389 /// NM_006079 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001841 // neural tube formation // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001889 // liver development // inferred from sequence or structural similarity /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001944 // vasculature development // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0002089 // lens morphogenesis in camera-type eye // inferred from electronic annotation /// 0002244 // hematopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002521 // leukocyte differentiation // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003156 // regulation of organ formation // inferred from sequence or structural similarity /// 0003197 // endocardial cushion development // inferred from electronic annotation /// 0003281 // ventricular septum development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from sequence or structural similarity /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from mutant phenotype /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007530 // sex determination // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0008584 // male gonad development // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0021602 // cranial nerve morphogenesis // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0030851 // granulocyte differentiation // inferred from electronic annotation /// 0034405 // response to fluid shear stress // inferred from mutant phenotype /// 0035360 // positive regulation of peroxisome proliferator activated receptor signaling pathway // inferred from direct assay /// 0035802 // adrenal cortex formation // inferred from sequence or structural similarity /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043627 // response to estrogen // inferred from direct assay /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0046697 // decidualization // inferred from electronic annotation /// 0048536 // spleen development // inferred from sequence or structural similarity /// 0048538 // thymus development // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048821 // erythrocyte development // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060411 // cardiac septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060971 // embryonic heart tube left/right pattern formation // inferred from sequence or structural similarity /// 0061156 // pulmonary artery morphogenesis // inferred from electronic annotation /// 0061308 // cardiac neural crest cell development involved in heart development // inferred from electronic annotation /// 0061371 // determination of heart left/right asymmetry // inferred from electronic annotation /// 0061428 // negative regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from direct assay /// 0070986 // left/right axis specification // inferred from sequence or structural similarity /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 1900164 // nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry // inferred from sequence or structural similarity /// 2000020 // positive regulation of male gonad development // inferred from sequence or structural similarity /// 2001141 // regulation of RNA biosynthetic process // inferred from direct assay 0000790 // nuclear chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from mutant phenotype 0001102 // RNA polymerase II activating transcription factor binding // inferred from electronic annotation /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from electronic annotation /// 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0050693 // LBD domain binding // inferred from physical interaction -38.60 124.10 -1.69 0.13 0.19 -4.56
49878_at 49878_at AA523441 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA523441:ng30d08.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-936303 /clone_end=3' /gb=AA523441 /gi=2264153 /ug=Hs.100915 /len=594 AA523441 peroxisomal biogenesis factor 16 PEX16 9409 NM_004813 /// NM_057174 0006625 // protein targeting to peroxisome // inferred from mutant phenotype /// 0007031 // peroxisome organization // inferred from mutant phenotype /// 0016557 // peroxisome membrane biogenesis // inferred from mutant phenotype /// 0016558 // protein import into peroxisome matrix // inferred from mutant phenotype /// 0022615 // protein to membrane docking // inferred from direct assay /// 0032581 // ER-dependent peroxisome organization // inferred from direct assay /// 0045046 // protein import into peroxisome membrane // inferred from mutant phenotype /// 0070972 // protein localization to endoplasmic reticulum // inferred from direct assay 0005777 // peroxisome // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005779 // integral component of peroxisomal membrane // inferred from direct assay /// 0005779 // integral component of peroxisomal membrane // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction -20.93 197.99 -1.69 0.13 0.19 -4.56
200653_s_at 200653_s_at M27319 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M27319.1 /DEF=Human calmodulin mRNA, complete cds. /FEA=mRNA /PROD=calmodulin /DB_XREF=gi:179809 /UG=Hs.177656 calmodulin 1 (phosphorylase kinase, delta) /FL=gb:M27319.1 gb:NM_006888.1 M27319 calmodulin 1 (phosphorylase kinase, delta) /// calmodulin 2 (phosphorylase kinase, delta) /// calmodulin 3 (phosphorylase kinase, delta) CALM1 /// CALM2 /// CALM3 801 /// 805 /// 808 NM_001166106 /// NM_001743 /// NM_005184 /// NM_006888 /// XM_006720258 0001975 // response to amphetamine // inferred from electronic annotation /// 0002027 // regulation of heart rate // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0005513 // detection of calcium ion // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030801 // positive regulation of cyclic nucleotide metabolic process // inferred from direct assay /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from electronic annotation /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred by curator 0000922 // spindle pole // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0030017 // sarcomere // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0031432 // titin binding // inferred from physical interaction /// 0031800 // type 3 metabotropic glutamate receptor binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0031997 // N-terminal myristoylation domain binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0072542 // protein phosphatase activator activity // inferred from direct assay 84.45 697.32 1.69 0.13 0.19 -4.56
203349_s_at 203349_s_at NM_004454 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004454.1 /DEF=Homo sapiens ets variant gene 5 (ets-related molecule) (ETV5), mRNA. /FEA=mRNA /GEN=ETV5 /PROD=ets variant gene 5 (ets-related molecule) /DB_XREF=gi:4758315 /UG=Hs.43697 ets variant gene 5 (ets-related molecule) /FL=gb:NM_004454.1 NM_004454 ets variant 5 ETV5 2119 NM_004454 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007610 // behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0034599 // cellular response to oxidative stress // inferred from direct assay /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048133 // male germ-line stem cell division // inferred from electronic annotation /// 0050807 // regulation of synapse organization // inferred from electronic annotation /// 0060252 // positive regulation of glial cell proliferation // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0071340 // skeletal muscle acetylcholine-gated channel clustering // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from mutant phenotype /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from mutant phenotype /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay 20.17 158.36 1.68 0.13 0.19 -4.56
203276_at 203276_at NM_005573 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005573.1 /DEF=Homo sapiens lamin B1 (LMNB1), mRNA. /FEA=mRNA /GEN=LMNB1 /PROD=lamin B1 /DB_XREF=gi:5031876 /UG=Hs.89497 lamin B1 /FL=gb:M34458.1 gb:NM_005573.1 NM_005573 lamin B1 LMNB1 4001 NM_001198557 /// NM_005573 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005638 // lamin filament // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0043274 // phospholipase binding // inferred from electronic annotation 43.95 85.92 1.68 0.13 0.19 -4.56
200614_at 200614_at NM_004859 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004859.1 /DEF=Homo sapiens clathrin, heavy polypeptide (Hc) (CLTC), mRNA. /FEA=mRNA /GEN=CLTC /PROD=clathrin heavy chain /DB_XREF=gi:4758011 /UG=Hs.178710 clathrin, heavy polypeptide (Hc) /FL=gb:D21260.1 gb:NM_004859.1 NM_004859 clathrin, heavy chain (Hc) CLTC 1213 NM_001288653 /// NM_004859 /// XM_005257012 0001649 // osteoblast differentiation // inferred from direct assay /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0031623 // receptor internalization // inferred from mutant phenotype /// 0033572 // transferrin transport // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0090307 // spindle assembly involved in mitosis // inferred from direct assay /// 1900126 // negative regulation of hyaluronan biosynthetic process // inferred from direct assay /// 1900126 // negative regulation of hyaluronan biosynthetic process // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030117 // membrane coat // inferred from electronic annotation /// 0030118 // clathrin coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031523 // Myb complex // inferred from direct assay /// 0032588 // trans-Golgi network membrane // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071439 // clathrin complex // inferred from direct assay 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005198 // structural molecule activity // non-traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0032051 // clathrin light chain binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 125.18 1544.89 1.68 0.13 0.19 -4.56
201379_s_at 201379_s_at NM_003288 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003288.1 /DEF=Homo sapiens tumor protein D52-like 2 (TPD52L2), mRNA. /FEA=mRNA /GEN=TPD52L2 /PROD=tumor protein D52-like 2 /DB_XREF=gi:4507642 /UG=Hs.154718 tumor protein D52-like 2 /FL=gb:AF004430.1 gb:NM_003288.1 NM_003288 tumor protein D52-like 2 TPD52L2 7165 NM_001243891 /// NM_001243892 /// NM_001243894 /// NM_001243895 /// NM_003288 /// NM_199359 /// NM_199360 /// NM_199361 /// NM_199362 /// NM_199363 /// NR_045090 0042127 // regulation of cell proliferation // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 47.85 189.68 1.68 0.14 0.19 -4.56
215001_s_at 215001_s_at AL161952 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL161952.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434M0813 (from clone DKFZp434M0813); partial cds. /FEA=mRNA /GEN=DKFZp434M0813 /PROD=hypothetical protein /DB_XREF=gi:7328002 /UG=Hs.170171 glutamate-ammonia ligase (glutamine synthase) AL161952 glutamate-ammonia ligase GLUL 2752 NM_001033044 /// NM_001033056 /// NM_002065 /// XM_006711278 0001504 // neurotransmitter uptake // traceable author statement /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006538 // glutamate catabolic process // traceable author statement /// 0006542 // glutamine biosynthetic process // traceable author statement /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0008283 // cell proliferation // inferred from direct assay /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0009749 // response to glucose // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004351 // glutamate decarboxylase activity // inferred from electronic annotation /// 0004356 // glutamate-ammonia ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0045503 // dynein light chain binding // inferred from electronic annotation 40.77 369.81 1.68 0.14 0.19 -4.56
201387_s_at 201387_s_at NM_004181 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004181.1 /DEF=Homo sapiens ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) (UCHL1), mRNA. /FEA=mRNA /GEN=UCHL1 /PROD=ubiquitin carboxyl-terminal esterase L1(ubiquitin thiolesterase) /DB_XREF=gi:4759283 /UG=Hs.76118 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) /FL=gb:BC000332.1 gb:BC005117.1 gb:NM_004181.1 NM_004181 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) UCHL1 7345 NM_004181 0002931 // response to ischemia // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007412 // axon target recognition // inferred from electronic annotation /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019896 // axon transport of mitochondrion // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0042755 // eating behavior // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0048747 // muscle fiber development // inferred from electronic annotation /// 0050905 // neuromuscular process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // traceable author statement /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031694 // alpha-2A adrenergic receptor binding // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from direct assay -70.00 581.48 -1.67 0.14 0.19 -4.56
206284_x_at 206284_x_at NM_001834 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001834.1 /DEF=Homo sapiens clathrin, light polypeptide (Lcb) (CLTB), transcript variant nonbrain, mRNA. /FEA=mRNA /GEN=CLTB /PROD=clathrin, light polypeptide B (Lcb) isoform a /DB_XREF=gi:4502900 /UG=Hs.73919 clathrin, light polypeptide (Lcb) /FL=gb:M20470.1 gb:NM_001834.1 NM_001834 clathrin, light chain B CLTB 1212 NM_001834 /// NM_007097 /// NR_045724 /// XM_006714818 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from sequence or structural similarity /// 0030118 // clathrin coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0060170 // ciliary membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation -35.95 197.32 -1.67 0.14 0.20 -4.56
209248_at 209248_at AL136713 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136713.1 /DEF=Homo sapiens mRNA; cDNA DKFZp566K113 (from clone DKFZp566K113); complete cds. /FEA=mRNA /GEN=DKFZp566K113 /PROD=hypothetical protein /DB_XREF=gi:12052945 /UG=Hs.182470 PTD010 protein /FL=gb:AF060923.1 gb:AL136713.1 gb:AF131820.1 gb:AF078863.1 gb:AB009685.1 gb:NM_014394.1 AL136713 growth hormone inducible transmembrane protein GHITM 27069 NM_014394 0006915 // apoptotic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -49.92 405.76 -1.67 0.14 0.20 -4.56
211547_s_at 211547_s_at L13387 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L13387.1 /DEF=Homo sapiens (clone 6-1) Miller-Dieker lissencephaly protein (LIS1) mRNA, complete cds. /FEA=mRNA /GEN=LIS1 /PROD=Miller-Dieker lissencephaly protein /DB_XREF=gi:349827 /UG=Hs.77318 platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD) /FL=gb:L13387.1 L13387 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) PAFAH1B1 5048 NM_000430 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000132 // establishment of mitotic spindle orientation // inferred from mutant phenotype /// 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0000278 // mitotic cell cycle // traceable author statement /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001675 // acrosome assembly // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from electronic annotation /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0008090 // retrograde axon cargo transport // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from mutant phenotype /// 0009306 // protein secretion // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0017145 // stem cell division // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // inferred from sequence or structural similarity /// 0021540 // corpus callosum morphogenesis // inferred from mutant phenotype /// 0021766 // hippocampus development // inferred from sequence or structural similarity /// 0021819 // layer formation in cerebral cortex // inferred from sequence or structural similarity /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from mutant phenotype /// 0032319 // regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0036035 // osteoclast development // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046469 // platelet activating factor metabolic process // inferred from sequence or structural similarity /// 0047496 // vesicle transport along microtubule // inferred from sequence or structural similarity /// 0048854 // brain morphogenesis // inferred from mutant phenotype /// 0050885 // neuromuscular process controlling balance // inferred from mutant phenotype /// 0051081 // nuclear envelope disassembly // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051660 // establishment of centrosome localization // inferred from electronic annotation 0000235 // astral microtubule // inferred from direct assay /// 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0031512 // motile primary cilium // inferred from sequence or structural similarity /// 0031513 // nonmotile primary cilium // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0034452 // dynactin binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043274 // phospholipase binding // inferred from sequence or structural similarity /// 0045502 // dynein binding // inferred from direct assay /// 0045505 // dynein intermediate chain binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from sequence or structural similarity 30.88 102.26 1.66 0.14 0.20 -4.56
202251_at 202251_at NM_004698 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004698.1 /DEF=Homo sapiens U4U6-associated RNA splicing factor (HPRP3P), mRNA. /FEA=mRNA /GEN=HPRP3P /PROD=U4U6-associated RNA splicing factor /DB_XREF=gi:4758555 /UG=Hs.11776 U4U6-associated RNA splicing factor /FL=gb:BC000184.1 gb:BC001954.1 gb:AF016370.1 gb:AF001947.1 gb:NM_004698.1 NM_004698 pre-mRNA processing factor 3 PRPF3 9129 NM_004698 /// XR_241103 /// XR_241104 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0046540 // U4/U6 x U5 tri-snRNP complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 21.80 59.33 1.66 0.14 0.20 -4.56
201663_s_at 201663_s_at NM_005496 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005496.1 /DEF=Homo sapiens chromosome-associated polypeptide C (CAP-C), mRNA. /FEA=mRNA /GEN=CAP-C /PROD=chromosome-associated polypeptide C /DB_XREF=gi:4885112 /UG=Hs.50758 SMC4 (structural maintenance of chromosomes 4, yeast)-like 1 /FL=gb:AB019987.1 gb:NM_005496.1 gb:AL136877.1 NM_005496 structural maintenance of chromosomes 4 SMC4 10051 NM_001002799 /// NM_001002800 /// NM_001288753 /// NM_005496 /// XM_006713459 0000070 // mitotic sister chromatid segregation // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0010032 // meiotic chromosome condensation // inferred from electronic annotation /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0045132 // meiotic chromosome segregation // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051383 // kinetochore organization // inferred from electronic annotation 0000796 // condensin complex // inferred from direct assay /// 0000796 // condensin complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // traceable author statement /// 0046982 // protein heterodimerization activity // inferred from physical interaction -40.77 335.51 -1.66 0.14 0.20 -4.56
210970_s_at 210970_s_at AF235049 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF235049.1 /DEF=Homo sapiens putative BTK-binding protein mRNA, complete cds. /FEA=mRNA /PROD=putative BTK-binding protein /DB_XREF=gi:11036533 /UG=Hs.7387 DKFZP564B116 protein /FL=gb:AF235049.1 AF235049 inhibitor of Bruton agammaglobulinemia tyrosine kinase IBTK 25998 NM_015525 /// XM_006715453 /// XM_006715454 /// XM_006715455 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // inferred from direct assay /// 0061099 // negative regulation of protein tyrosine kinase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0030292 // protein tyrosine kinase inhibitor activity // inferred from direct assay 20.83 90.14 1.65 0.14 0.20 -4.56
217868_s_at 217868_s_at NM_016025 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016025.1 /DEF=Homo sapiens CGI-81 protein (DREV1), mRNA. /FEA=mRNA /GEN=DREV1 /PROD=CGI-81 protein /DB_XREF=gi:7705788 /UG=Hs.279583 CGI-81 protein /FL=gb:BC000195.1 gb:AF151839.1 gb:NM_016025.1 NM_016025 methyltransferase like 9 METTL9 51108 NM_001077180 /// NM_001288659 /// NM_001288660 /// NM_016025 /// XM_006721049 0008152 // metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation -94.58 484.91 -1.65 0.14 0.20 -4.56
204900_x_at 204900_x_at NM_003864 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003864.1 /DEF=Homo sapiens sin3-associated polypeptide, 30kD (SAP30), mRNA. /FEA=mRNA /GEN=SAP30 /PROD=sin3 associated polypeptide p30 /DB_XREF=gi:4506782 /UG=Hs.20985 sin3-associated polypeptide, 30kD /FL=gb:AF055993.1 gb:NM_003864.1 NM_003864 Sin3A-associated protein, 30kDa SAP30 8819 NM_003864 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -22.77 98.44 -1.65 0.14 0.20 -4.56
213911_s_at 213911_s_at BF718636 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF718636 /FEA=EST /DB_XREF=gi:12019549 /DB_XREF=est:KEST107 /CLONE=S90891.NIH-8-R /UG=Hs.119192 H2A histone family, member Z BF718636 H2A histone family, member Z H2AFZ 3015 NM_002106 /// XM_005262971 0006334 // nucleosome assembly // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0071392 // cellular response to estradiol stimulus // inferred from mutant phenotype 0000786 // nucleosome // inferred from electronic annotation /// 0001740 // Barr body // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 73.70 1242.60 1.65 0.14 0.20 -4.56
208640_at 208640_at BG292367 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG292367 /FEA=EST /DB_XREF=gi:13051102 /DB_XREF=est:602386268F1 /CLONE=IMAGE:4515137 /UG=Hs.173737 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) /FL=gb:BC004247.1 gb:M29870.1 gb:M31467.1 gb:NM_006908.2 BG292367 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) RAC1 5879 NM_006908 /// NM_018890 /// NM_198829 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0002093 // auditory receptor cell morphogenesis // inferred from electronic annotation /// 0002551 // mast cell chemotaxis // inferred from electronic annotation /// 0003382 // epithelial cell morphogenesis // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0006972 // hyperosmotic response // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007160 // cell-matrix adhesion // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009611 // response to wounding // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0010310 // regulation of hydrogen peroxide metabolic process // traceable author statement /// 0010592 // positive regulation of lamellipodium assembly // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016358 // dendrite development // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // inferred from electronic annotation /// 0021831 // embryonic olfactory bulb interneuron precursor migration // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from genetic interaction /// 0030041 // actin filament polymerization // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030334 // regulation of cell migration // inferred from mutant phenotype /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0031295 // T cell costimulation // traceable author statement /// 0031529 // ruffle organization // inferred from direct assay /// 0031529 // ruffle organization // traceable author statement /// 0032707 // negative regulation of interleukin-23 production // inferred from direct assay /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0035025 // positive regulation of Rho protein signal transduction // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // inferred from electronic annotation /// 0043652 // engulfment of apoptotic cell // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0045453 // bone resorption // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048261 // negative regulation of receptor-mediated endocytosis // traceable author statement /// 0048532 // anatomical structure arrangement // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048870 // cell motility // inferred from direct assay /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0051668 // localization within membrane // inferred from mutant phenotype /// 0060071 // Wnt signaling pathway, planar cell polarity pathway // inferred from electronic annotation /// 0060263 // regulation of respiratory burst // inferred from direct assay /// 0071526 // semaphorin-plexin signaling pathway // inferred from sequence or structural similarity /// 0071542 // dopaminergic neuron differentiation // inferred from electronic annotation /// 0090103 // cochlea morphogenesis // inferred from electronic annotation /// 0097178 // ruffle assembly // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0001891 // phagocytic cup // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0019897 // extrinsic component of plasma membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0051022 // Rho GDP-dissociation inhibitor binding // inferred from sequence or structural similarity -73.02 1999.89 -1.64 0.14 0.20 -4.56
217813_s_at 217813_s_at NM_006717 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006717.1 /DEF=Homo sapiens spindlin (SPIN), mRNA. /FEA=mRNA /GEN=SPIN /PROD=spindlin /DB_XREF=gi:5730064 /UG=Hs.289043 spindlin /FL=gb:AL136719.1 gb:AF087864.1 gb:AF317228.2 gb:AF106682.1 gb:NM_006717.1 NM_006717 spindlin 1 SPIN1 10927 NM_006717 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007276 // gamete generation // inferred from electronic annotation /// 0009303 // rRNA transcription // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0035064 // methylated histone binding // inferred from direct assay -25.60 90.80 -1.64 0.14 0.20 -4.56
221452_s_at 221452_s_at NM_030969 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030969.1 /DEF=Homo sapiens hypothetical protein MGC1223 (MGC1223), mRNA. /FEA=CDS /GEN=MGC1223 /PROD=hypothetical protein MGC1223 /DB_XREF=gi:13624338 /FL=gb:NM_030969.1 NM_030969 transmembrane protein 14B TMEM14B 81853 NM_001127711 /// NM_001286484 /// NM_001286488 /// NM_001286489 /// NM_030969 /// NR_104454 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 46.62 270.06 1.64 0.14 0.20 -4.56
201179_s_at 201179_s_at J03005 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J03005.1 /DEF=Human alternative guanine nucleotide-binding regulatory protein (G) alpha-inhibitory-subunit mRNA, complete cds. /FEA=mRNA /GEN=GNAI1 /DB_XREF=gi:183183 /UG=Hs.73799 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 /FL=gb:J03005.1 gb:J03198.1 gb:M27543.1 gb:J03238.1 gb:NM_006496.1 J03005 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 GNAI3 2773 NM_006496 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // non-traceable author statement /// 0006906 // vesicle fusion // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // traceable author statement /// 0007194 // negative regulation of adenylate cyclase activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0051301 // cell division // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0042588 // zymogen granule // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031821 // G-protein coupled serotonin receptor binding // not recorded /// 0032794 // GTPase activating protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -32.52 247.86 -1.64 0.14 0.20 -4.56
201234_at 201234_at NM_004517 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004517.1 /DEF=Homo sapiens integrin-linked kinase (ILK), mRNA. /FEA=mRNA /GEN=ILK /PROD=integrin-linked kinase /DB_XREF=gi:4758605 /UG=Hs.6196 integrin-linked kinase /FL=gb:U40282.1 gb:NM_004517.1 NM_004517 integrin-linked kinase ILK 3611 NM_001014794 /// NM_001014795 /// NM_001278441 /// NM_001278442 /// NM_004517 /// XM_005252904 /// XM_005252905 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // traceable author statement /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007569 // cell aging // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0010667 // negative regulation of cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0014044 // Schwann cell development // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0021675 // nerve development // inferred from electronic annotation /// 0022011 // myelination in peripheral nervous system // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // inferred from electronic annotation /// 0032288 // myelin assembly // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from mutant phenotype /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043206 // extracellular fibril organization // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // inferred from electronic annotation /// 0045663 // positive regulation of myoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043034 // costamere // inferred from electronic annotation /// 0043195 // terminal bouton // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction 81.65 471.75 1.64 0.14 0.20 -4.56
202534_x_at 202534_x_at NM_000791 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000791.2 /DEF=Homo sapiens dihydrofolate reductase (DHFR), mRNA. /FEA=mRNA /GEN=DHFR /PROD=dihydrofolate reductase /DB_XREF=gi:7262376 /UG=Hs.83765 dihydrofolate reductase /FL=gb:BC000192.1 gb:BC003584.1 gb:NM_000791.2 NM_000791 dihydrofolate reductase DHFR 1719 NM_000791 /// NM_001290354 /// NM_001290357 /// NR_110936 /// XM_005248455 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006545 // glycine biosynthetic process // inferred from electronic annotation /// 0006545 // glycine biosynthetic process // non-traceable author statement /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // non-traceable author statement /// 0031427 // response to methotrexate // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0046653 // tetrahydrofolate metabolic process // inferred from direct assay /// 0046654 // tetrahydrofolate biosynthetic process // inferred from electronic annotation /// 0046655 // folic acid metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0004146 // dihydrofolate reductase activity // inferred from direct assay /// 0004146 // dihydrofolate reductase activity // inferred from electronic annotation /// 0004146 // dihydrofolate reductase activity // non-traceable author statement /// 0008144 // drug binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation 41.95 128.07 1.64 0.14 0.20 -4.56
201727_s_at 201727_s_at NM_001419 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001419.1 /DEF=Homo sapiens ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) (ELAVL1), mRNA. /FEA=mRNA /GEN=ELAVL1 /PROD=ELAV (embryonic lethal, abnormal vision,Drosophila)-like 1 (Hu antigen R) /DB_XREF=gi:4503550 /UG=Hs.12379 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) /FL=gb:U38175.1 gb:BC003376.1 gb:NM_001419.1 NM_001419 ELAV like RNA binding protein 1 ELAVL1 1994 NM_001419 /// XR_430131 0006417 // regulation of translation // inferred from mutant phenotype /// 0007275 // multicellular organismal development // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from direct assay /// 0048255 // mRNA stabilization // inferred from direct assay /// 0048255 // mRNA stabilization // inferred from mutant phenotype /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from mutant phenotype /// 2000036 // regulation of stem cell maintenance // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003729 // mRNA binding // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0017091 // AU-rich element binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0035925 // mRNA 3'-UTR AU-rich region binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -27.52 191.14 -1.64 0.14 0.20 -4.56
208688_x_at 208688_x_at U78525 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U78525.1 /DEF=Homo sapiens eukaryotic translation initiation factor (eIF3) mRNA, complete cds. /FEA=mRNA /GEN=eIF3 /PROD=eukaryotic translation initiation factor /DB_XREF=gi:2558667 /UG=Hs.57783 eukaryotic translation initiation factor 3, subunit 9 (eta, 116kD) /FL=gb:U78525.1 U78525 eukaryotic translation initiation factor 3, subunit B EIF3B 8662 NM_001037283 /// NM_003751 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0032947 // protein complex scaffold // traceable author statement -67.50 712.10 -1.64 0.14 0.20 -4.56
208927_at 208927_at BF673888 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF673888 /FEA=EST /DB_XREF=gi:11947783 /DB_XREF=est:602137554F1 /CLONE=IMAGE:4274077 /UG=Hs.129951 speckle-type POZ protein /FL=gb:BC001269.1 BF673888 speckle-type POZ protein SPOP 8405 NM_001007226 /// NM_001007227 /// NM_001007228 /// NM_001007229 /// NM_001007230 /// NM_003563 /// XM_005257723 /// XM_005257724 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction 31.33 112.54 1.64 0.14 0.20 -4.56
209784_s_at 209784_s_at AF029778 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF029778.1 /DEF=Homo sapiens Jagged2 (JAG2) mRNA, complete cds. /FEA=mRNA /GEN=JAG2 /PROD=Jagged2 /DB_XREF=gi:2605944 /UG=Hs.166154 jagged 2 /FL=gb:AF003521.1 gb:AF020201.1 gb:AF029778.1 gb:NM_002226.1 AF029778 jagged 2 JAG2 3714 NM_002226 /// NM_145159 0001501 // skeletal system development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003016 // respiratory system process // inferred from electronic annotation /// 0007049 // cell cycle // non-traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0009912 // auditory receptor cell fate commitment // inferred from sequence or structural similarity /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from direct assay /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from direct assay /// 0030334 // regulation of cell migration // non-traceable author statement /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042492 // gamma-delta T cell differentiation // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045061 // thymic T cell selection // inferred from direct assay /// 1990134 // epithelial cell apoptotic process involved in palatal shelf morphogenesis // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005112 // Notch binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay -98.00 487.70 -1.64 0.14 0.20 -4.56
201230_s_at 201230_s_at NM_006321 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006321.1 /DEF=Homo sapiens ariadne (Drosophila) homolog 2 (ARIH2), mRNA. /FEA=mRNA /GEN=ARIH2 /PROD=ariadne (Drosophila) homolog 2 /DB_XREF=gi:5453556 /UG=Hs.241558 ariadne (Drosophila) homolog 2 /FL=gb:BC000422.1 gb:AF099149.1 gb:NM_006321.1 gb:AF183427.1 NM_006321 ariadne RBR E3 ubiquitin protein ligase 2 ARIH2 10425 NM_006321 /// XM_005264798 /// XM_006712924 /// XM_006712925 /// XM_006712926 /// XM_006712927 /// XM_006712928 /// XM_006712929 0000209 // protein polyubiquitination // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0048588 // developmental cell growth // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0071425 // hematopoietic stem cell proliferation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 24.02 126.71 1.64 0.14 0.21 -4.56
209103_s_at 209103_s_at BC001049 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001049.1 /DEF=Homo sapiens, Similar to ubiquitin fusion degradation 1 like, clone MGC:1385, mRNA, complete cds. /FEA=mRNA /PROD=Similar to ubiquitin fusion degradation 1 like /DB_XREF=gi:12654446 /UG=Hs.181369 ubiquitin fusion degradation 1-like /FL=gb:BC001049.1 gb:BC005087.1 gb:AF141201.1 BC001049 ubiquitin fusion degradation 1 like (yeast) UFD1L 7353 NM_001035247 /// NM_005659 /// XM_005261276 /// XM_005261277 /// XM_006724319 0001501 // skeletal system development // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0004843 // ubiquitin-specific protease activity // traceable author statement /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation 70.03 410.34 1.64 0.14 0.21 -4.56
216309_x_at 216309_x_at AF072467 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF072467.1 /DEF=Homo sapiens (JH8) mRNA, partial cds. /FEA=mRNA /GEN=JH8 /PROD=unknown /DB_XREF=gi:3435200 /UG=Hs.142296 jerky (mouse) homolog AF072467 Jrk homolog (mouse) JRK 8629 NM_001077527 /// NM_001279352 /// NM_003724 /// XM_006716677 /// XM_006716678 /// XM_006716679 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 21.43 51.29 1.64 0.14 0.21 -4.56
209107_x_at 209107_x_at U19179 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U19179.1 /DEF=Human (Hin-2) mRNA, complete cds. /FEA=mRNA /GEN=Hin-2 /DB_XREF=gi:726037 /UG=Hs.74002 nuclear receptor coactivator 1 /FL=gb:U19179.1 U19179 nuclear receptor coactivator 1 NCOA1 8648 NM_003743 /// NM_147223 /// NM_147233 /// XM_005264625 /// XM_005264626 /// XM_005264627 /// XM_005264628 /// XM_006712126 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000435 // positive regulation of transcription from RNA polymerase II promoter by galactose // inferred from direct assay /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007605 // sensory perception of sound // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0009887 // organ morphogenesis // traceable author statement /// 0014807 // regulation of somitogenesis // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation /// 0021527 // spinal cord association neuron differentiation // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021854 // hypothalamus development // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0042698 // ovulation cycle // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045925 // positive regulation of female receptivity // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0060179 // male mating behavior // inferred from electronic annotation /// 0060206 // estrous cycle phase // inferred from electronic annotation /// 0060594 // mammary gland specification // inferred from electronic annotation /// 0060713 // labyrinthine layer morphogenesis // inferred from electronic annotation /// 2001038 // regulation of cellular response to drug // inferred from electronic annotation /// 2001141 // regulation of RNA biosynthetic process // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0001012 // RNA polymerase II regulatory region DNA binding // inferred from electronic annotation /// 0001105 // RNA polymerase II transcription coactivator activity // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0032403 // protein complex binding // inferred from electronic annotation /// 0033142 // progesterone receptor binding // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from direct assay /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0050681 // androgen receptor binding // non-traceable author statement /// 0071837 // HMG box domain binding // inferred from electronic annotation -26.40 169.90 -1.64 0.14 0.21 -4.56
201259_s_at 201259_s_at AI768845 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI768845 /FEA=EST /DB_XREF=gi:5235354 /DB_XREF=est:wj12e10.x1 /CLONE=IMAGE:2402634 /UG=Hs.80919 synaptophysin-like protein /FL=gb:NM_006754.1 AI768845 synaptophysin-like 1 SYPL1 6856 NM_006754 /// NM_182715 /// XM_006716099 0006810 // transport // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement 0005887 // integral component of plasma membrane // traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0030141 // secretory granule // inferred from electronic annotation /// 0030285 // integral component of synaptic vesicle membrane // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation -58.60 377.95 -1.63 0.14 0.21 -4.56
202296_s_at 202296_s_at NM_007033 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007033.1 /DEF=Homo sapiens similar to S. cerevisiae RER1 (RER1), mRNA. /FEA=mRNA /GEN=RER1 /PROD=similar to S. cerevisiae RER1 /DB_XREF=gi:5902045 /UG=Hs.40500 similar to S. cerevisiae RER1 /FL=gb:BC004965.1 gb:NM_007033.1 gb:AF157324.1 NM_007033 retention in endoplasmic reticulum sorting receptor 1 RER1 11079 NM_007033 /// XM_005244713 /// XM_006710305 /// XM_006710306 /// XM_006710307 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // inferred from direct assay 48.18 418.69 1.63 0.14 0.21 -4.56
201636_at 201636_at BG025078 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG025078 /FEA=EST /DB_XREF=gi:12411309 /DB_XREF=est:602276425F1 /CLONE=IMAGE:4364070 /UG=Hs.82712 fragile X mental retardation, autosomal homolog 1 /FL=gb:NM_005087.1 gb:U25165.1 BG025078 fragile X mental retardation, autosomal homolog 1 FXR1 8087 NM_001013438 /// NM_001013439 /// NM_005087 /// XM_005247813 /// XM_005247814 /// XM_005247815 /// XM_005247816 /// XM_006713775 0006915 // apoptotic process // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005844 // polysome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0043034 // costamere // inferred from electronic annotation 0002151 // G-quadruplex RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -42.20 196.10 -1.63 0.14 0.21 -4.56
202322_s_at 202322_s_at NM_004837 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004837.1 /DEF=Homo sapiens geranylgeranyl diphosphate synthase 1 (GGPS1), mRNA. /FEA=mRNA /GEN=GGPS1 /PROD=geranylgeranyl diphosphate synthase 1 /DB_XREF=gi:4758429 /UG=Hs.55498 geranylgeranyl diphosphate synthase 1 /FL=gb:AF057698.1 gb:BC005252.1 gb:AB017971.1 gb:AB016043.1 gb:AB019036.1 gb:NM_004837.1 gb:AF125394.1 NM_004837 geranylgeranyl diphosphate synthase 1 GGPS1 9453 NM_001037277 /// NM_001037278 /// NM_004837 /// NR_036605 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006720 // isoprenoid metabolic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0033384 // geranyl diphosphate biosynthetic process // inferred from electronic annotation /// 0033386 // geranylgeranyl diphosphate biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045337 // farnesyl diphosphate biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004161 // dimethylallyltranstransferase activity // inferred from electronic annotation /// 0004311 // farnesyltranstransferase activity // inferred from direct assay /// 0004337 // geranyltranstransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -22.05 145.68 -1.63 0.14 0.21 -4.56
205036_at 205036_at NM_007080 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007080.1 /DEF=Homo sapiens Sm protein F (LSM6), mRNA. /FEA=mRNA /GEN=LSM6 /PROD=Sm protein F /DB_XREF=gi:5901997 /UG=Hs.42438 Sm protein F /FL=gb:NM_007080.1 gb:AF182292.1 NM_007080 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) LSM6 11157 NM_007080 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 35.53 139.16 1.63 0.15 0.21 -4.56
201938_at 201938_at NM_004642 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004642.1 /DEF=Homo sapiens deleted in oral cancer (mouse, homolog) 1 (DOC1), mRNA. /FEA=mRNA /GEN=DOC1 /PROD=deleted in oral cancer (mouse, homolog) 1 /DB_XREF=gi:4758187 /UG=Hs.3436 deleted in oral cancer (mouse, homolog) 1 /FL=gb:AB006077.1 gb:AF006484.1 gb:NM_004642.1 NM_004642 cyclin-dependent kinase 2 associated protein 1 CDK2AP1 8099 NM_001270433 /// NM_001270434 /// NM_004642 /// NR_073007 /// NR_073008 0000084 // mitotic S phase // traceable author statement /// 0006261 // DNA-dependent DNA replication // traceable author statement /// 0006468 // protein phosphorylation // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // traceable author statement 0003677 // DNA binding // traceable author statement 196.98 1373.41 1.63 0.15 0.21 -4.56
201240_s_at 201240_s_at NM_014752 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014752.1 /DEF=Homo sapiens KIAA0102 gene product (KIAA0102), mRNA. /FEA=mRNA /GEN=KIAA0102 /PROD=KIAA0102 gene product /DB_XREF=gi:7661907 /UG=Hs.77665 KIAA0102 gene product /FL=gb:D14658.1 gb:NM_014752.1 NM_014752 signal peptidase complex subunit 2 homolog (S. cerevisiae) SPCS2 9789 NM_014752 0006412 // translation // traceable author statement /// 0006465 // signal peptide processing // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005787 // signal peptidase complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 60.07 675.14 1.62 0.15 0.21 -4.57
200778_s_at 200778_s_at AI191427 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI191427 /FEA=EST /DB_XREF=gi:3742636 /DB_XREF=est:qe48g03.x1 /CLONE=IMAGE:1742260 /UG=Hs.155595 neural precursor cell expressed, developmentally down-regulated 5 /FL=gb:D28540.1 gb:NM_004404.1 gb:D63878.1 AI191427 septin 2 SEPT2 4735 NM_001008491 /// NM_001008492 /// NM_001282972 /// NM_001282973 /// NM_004404 /// NM_006155 /// XM_005247011 /// XM_005247012 /// XM_005247013 /// XM_006712546 /// XM_006712547 /// XM_006712548 /// XM_006712549 /// XM_006712550 0002036 // regulation of L-glutamate transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000145 // exocyst // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0060170 // ciliary membrane // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from electronic annotation -155.48 1007.56 -1.62 0.15 0.21 -4.57
202824_s_at 202824_s_at NM_005648 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005648.1 /DEF=Homo sapiens transcription elongation factor B (SIII), polypeptide 1 (15kD, elongin C) (TCEB1), mRNA. /FEA=mRNA /GEN=TCEB1 /PROD=elongin C /DB_XREF=gi:5032160 /UG=Hs.184693 transcription elongation factor B (SIII), polypeptide 1 (15kD, elongin C) /FL=gb:NM_005648.1 gb:L34587.1 NM_005648 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) TCEB1 6921 NM_001204857 /// NM_001204858 /// NM_001204859 /// NM_001204860 /// NM_001204861 /// NM_001204862 /// NM_001204863 /// NM_001204864 /// NM_005648 /// XM_005251290 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032968 // positive regulation of transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0050434 // positive regulation of viral transcription // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0030891 // VCB complex // inferred from electronic annotation /// 0070449 // elongin complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation 42.40 468.57 1.62 0.15 0.21 -4.57
207625_s_at 207625_s_at NM_005093 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005093.1 /DEF=Homo sapiens core-binding factor, runt domain, alpha subunit 2; translocated to, 2 (CBFA2T2), mRNA. /FEA=mRNA /GEN=CBFA2T2 /PROD=core-binding factor, runt domain, alpha subunit2; translocated to, 2 /DB_XREF=gi:4826662 /UG=Hs.153934 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 /FL=gb:AF013970.1 gb:NM_005093.1 NM_005093 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 CBFA2T2 9139 NM_001032999 /// NM_001039709 /// NM_005093 /// NM_175864 /// XM_006723886 /// XM_006723887 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0010977 // negative regulation of neuron projection development // inferred from sequence or structural similarity /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -23.27 44.16 -1.62 0.15 0.21 -4.57
202233_s_at 202233_s_at NM_006004 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006004.1 /DEF=Homo sapiens ubiquinol-cytochrome c reductase hinge protein (UQCRH), mRNA. /FEA=mRNA /GEN=UQCRH /PROD=ubiquinol-cytochrome c reductase hinge protein /DB_XREF=gi:5174744 /UG=Hs.73818 ubiquinol-cytochrome c reductase hinge protein /FL=gb:BC001426.1 gb:BC001934.1 gb:M36647.1 gb:NM_006004.1 NM_006004 ubiquinol-cytochrome c reductase hinge protein /// ubiquinol-cytochrome c reductase hinge protein-like UQCRH /// UQCRHL 7388 /// 440567 NM_001089591 /// NM_006004 /// XM_005271167 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006119 // oxidative phosphorylation // traceable author statement /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // not recorded /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0007266 // Rho protein signal transduction // /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009060 // aerobic respiration // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030168 // platelet activation // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0031584 // activation of phospholipase D activity // not recorded /// 0031584 // activation of phospholipase D activity // /// 0031584 // activation of phospholipase D activity // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0055114 // oxidation-reduction process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // traceable author statement /// 0005750 // mitochondrial respiratory chain complex III // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031526 // brush border membrane // not recorded /// 0031526 // brush border membrane // /// 0031526 // brush border membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001664 // G-protein coupled receptor binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031683 // G-protein beta/gamma-subunit complex binding // /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // not recorded /// 0031702 // type 1 angiotensin receptor binding // /// 0031752 // D5 dopamine receptor binding // not recorded /// 0031752 // D5 dopamine receptor binding // /// 0031752 // D5 dopamine receptor binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 67.70 823.67 1.62 0.15 0.21 -4.57
212782_x_at 212782_x_at BG335629 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG335629 /FEA=EST /DB_XREF=gi:13142067 /DB_XREF=est:602404254F1 /CLONE=IMAGE:4542084 /UG=Hs.80475 polymerase (RNA) II (DNA directed) polypeptide J (13.3kD) BG335629 polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa POLR2J 5439 NM_006234 /// XM_005250452 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay 0001055 // RNA polymerase II activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0030275 // LRR domain binding // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation -39.70 350.27 -1.62 0.15 0.21 -4.57
203319_s_at 203319_s_at L04282 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L04282.1 /DEF=Human CACCC box-binding protein mRNA, complete cds. /FEA=mRNA /PROD=CACCC box-binding protein /DB_XREF=gi:388318 /UG=Hs.112180 zinc finger protein 148 (pHZ-52) /FL=gb:NM_021964.1 gb:L04282.1 L04282 zinc finger protein 148 ZNF148 7707 NM_021964 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006968 // cellular defense response // traceable author statement /// 0007276 // gamete generation // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0021762 // substantia nigra development // inferred from expression pattern /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -20.48 105.86 -1.62 0.15 0.21 -4.57
202085_at 202085_at NM_004817 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004817.1 /DEF=Homo sapiens tight junction protein 2 (zona occludens 2) (TJP2), mRNA. /FEA=mRNA /GEN=TJP2 /PROD=tight junction protein 2 (zona occludens 2) /DB_XREF=gi:4759341 /UG=Hs.75608 tight junction protein 2 (zona occludens 2) /FL=gb:NM_004817.1 gb:L27476.1 NM_004817 tight junction protein 2 TJP2 9414 NM_001170414 /// NM_001170415 /// NM_001170416 /// NM_001170630 /// NM_004817 /// NM_201629 /// XM_005252311 /// XM_005252312 /// XM_005252313 /// XM_005252314 /// XM_005252315 /// XM_006717324 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0010033 // response to organic substance // inferred from electronic annotation /// 0035329 // hippo signaling // traceable author statement /// 0046939 // nucleotide phosphorylation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005912 // adherens junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay 0004385 // guanylate kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation -51.00 507.95 -1.62 0.15 0.21 -4.57
221771_s_at 221771_s_at BC003542 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC003542.1 /DEF=Homo sapiens, clone IMAGE:3611719, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3611719) /DB_XREF=gi:13097656 /UG=Hs.244482 Homo sapiens, clone IMAGE:3611719, mRNA, partial cds BC003542 M-phase phosphoprotein 8 MPHOSPH8 54737 NM_017520 /// XM_005266435 /// XM_005266436 /// XR_245390 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // non-traceable author statement /// 0044030 // regulation of DNA methylation // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype 0000788 // nuclear nucleosome // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0035064 // methylated histone binding // inferred from direct assay 23.30 66.62 1.62 0.15 0.21 -4.57
201552_at 201552_at NM_005561 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005561.2 /DEF=Homo sapiens lysosomal-associated membrane protein 1 (LAMP1), mRNA. /FEA=mRNA /GEN=LAMP1 /PROD=lysosomal-associated membrane protein 1 /DB_XREF=gi:7669500 /UG=Hs.150101 lysosomal-associated membrane protein 1 /FL=gb:J04182.1 gb:J03263.1 gb:NM_005561.2 NM_005561 lysosomal-associated membrane protein 1 LAMP1 3916 NM_005561 0006914 // autophagy // inferred from electronic annotation /// 0008626 // granzyme-mediated apoptotic signaling pathway // inferred from mutant phenotype /// 0043323 // positive regulation of natural killer cell degranulation // inferred from mutant phenotype /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0048102 // autophagic cell death // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0072594 // establishment of protein localization to organelle // inferred from mutant phenotype /// 0090160 // Golgi to lysosome transport // inferred from mutant phenotype /// 1902513 // regulation of organelle transport along microtubule // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005773 // vacuole // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044194 // cytolytic granule // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097208 // alveolar lamellar body // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction -74.15 854.67 -1.62 0.15 0.21 -4.57
218171_at 218171_at AF195514 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF195514.1 /DEF=Homo sapiens VPS4-2 ATPase (VPS42) mRNA, complete cds. /FEA=mRNA /GEN=VPS42 /PROD=VPS4-2 ATPase /DB_XREF=gi:11225484 /UG=Hs.126550 suppressor of K+ transport defect 1 /FL=gb:AF195514.1 gb:AF038960.1 gb:NM_004869.1 AF195514 vacuolar protein sorting 4 homolog B (S. cerevisiae) VPS4B 9525 NM_004869 /// XM_006722582 0006200 // ATP catabolic process // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016197 // endosomal transport // inferred from direct assay /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // inferred from mutant phenotype /// 0032510 // endosome to lysosome transport via multivesicular body sorting pathway // inferred from mutant phenotype /// 0033993 // response to lipid // inferred from direct assay /// 0050792 // regulation of viral process // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 1902188 // positive regulation of viral release from host cell // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005774 // vacuolar membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from mutant phenotype /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042623 // ATPase activity, coupled // non-traceable author statement -64.48 382.44 -1.62 0.15 0.21 -4.57
212263_at 212263_at AI114716 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI114716 /FEA=EST /DB_XREF=gi:6360061 /DB_XREF=est:HA1315 /UG=Hs.15020 homolog of mouse quaking QKI (KH domain RNA binding protein) /FL=gb:AF142419.1 gb:AF142422.1 AI114716 QKI, KH domain containing, RNA binding QKI 9444 NM_006775 /// NM_206853 /// NM_206854 /// NM_206855 /// XM_005267224 /// XR_245557 /// XR_427977 /// XR_427978 0001570 // vasculogenesis // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0042759 // long-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -63.95 394.98 -1.62 0.15 0.21 -4.57
210027_s_at 210027_s_at M80261 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M80261.1 /DEF=Human apurinic endonuclease (APE) mRNA, complete cds. /FEA=mRNA /GEN=APE /PROD=apurinic endonuclease /DB_XREF=gi:178742 /UG=Hs.73722 APEX nuclease (multifunctional DNA repair enzyme) /FL=gb:BC004979.1 gb:M80261.1 M80261 APEX nuclease (multifunctional DNA repair enzyme) 1 APEX1 328 NM_001244249 /// NM_001641 /// NM_080648 /// NM_080649 /// XM_005267581 /// XM_005267582 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0000737 // DNA catabolic process, endonucleolytic // traceable author statement /// 0000738 // DNA catabolic process, exonucleolytic // not recorded /// 0006281 // DNA repair // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // not recorded /// 0006284 // base-excision repair // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0071320 // cellular response to cAMP // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation /// 0071417 // cellular response to organonitrogen compound // inferred from electronic annotation /// 0080111 // DNA demethylation // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // traceable author statement /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // inferred from electronic annotation /// 0090502 // RNA phosphodiester bond hydrolysis, endonucleolytic // traceable author statement /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005840 // ribosome // traceable author statement /// 0016607 // nuclear speck // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003714 // transcription corepressor activity // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from direct assay /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from direct assay /// 0004520 // endodeoxyribonuclease activity // traceable author statement /// 0004521 // endoribonuclease activity // inferred from electronic annotation /// 0004523 // RNA-DNA hybrid ribonuclease activity // traceable author statement /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004528 // phosphodiesterase I activity // traceable author statement /// 0004844 // uracil DNA N-glycosylase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008081 // phosphoric diester hydrolase activity // inferred from direct assay /// 0008311 // double-stranded DNA 3'-5' exodeoxyribonuclease activity // not recorded /// 0008408 // 3'-5' exonuclease activity // inferred from direct assay /// 0008408 // 3'-5' exonuclease activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016890 // site-specific endodeoxyribonuclease activity, specific for altered base // inferred from direct assay /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from direct assay /// 0051059 // NF-kappaB binding // inferred from electronic annotation 64.20 481.93 1.61 0.15 0.21 -4.57
212294_at 212294_at BG111761 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG111761 /FEA=EST /DB_XREF=gi:12605267 /DB_XREF=est:602285343F1 /CLONE=IMAGE:4372619 /UG=Hs.8107 Homo sapiens mRNA; cDNA DKFZp586B0918 (from clone DKFZp586B0918) BG111761 guanine nucleotide binding protein (G protein), gamma 12 GNG12 55970 NM_018841 0006112 // energy reserve metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0071377 // cellular response to glucagon stimulus // traceable author statement 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from direct assay /// 0042301 // phosphate ion binding // inferred from electronic annotation 94.23 981.79 1.61 0.15 0.21 -4.57
211716_x_at 211716_x_at BC005851 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005851.1 /DEF=Homo sapiens, Rho GDP dissociation inhibitor (GDI) alpha, clone MGC:2810, mRNA, complete cds. /FEA=mRNA /PROD=Rho GDP dissociation inhibitor (GDI) alpha /DB_XREF=gi:13543380 /FL=gb:BC005851.1 BC005851 Rho GDP dissociation inhibitor (GDI) alpha ARHGDIA 396 NM_001185077 /// NM_001185078 /// NM_004309 0006928 // cellular component movement // traceable author statement /// 0007162 // negative regulation of cell adhesion // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050770 // regulation of axonogenesis // traceable author statement /// 0050771 // negative regulation of axonogenesis // traceable author statement /// 0050772 // positive regulation of axonogenesis // traceable author statement /// 0050790 // regulation of catalytic activity // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0071526 // semaphorin-plexin signaling pathway // inferred from sequence or structural similarity 0001772 // immunological synapse // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005094 // Rho GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 134.57 789.84 1.61 0.15 0.21 -4.57
208842_s_at 208842_s_at W93787 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W93787 /FEA=EST /DB_XREF=gi:1422930 /DB_XREF=est:zd96c09.s1 /CLONE=IMAGE:357328 /UG=Hs.6880 DKFZP434D156 protein /FL=gb:BC001408.1 W93787 golgi reassembly stacking protein 2, 55kDa GORASP2 26003 NM_001201428 /// NM_015530 /// XM_006712408 0000278 // mitotic cell cycle // traceable author statement /// 0006996 // organelle organization // inferred from mutant phenotype 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction 65.42 530.59 1.61 0.15 0.21 -4.57
218027_at 218027_at NM_014175 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014175.1 /DEF=Homo sapiens HSPC145 protein (HSPC145), mRNA. /FEA=mRNA /GEN=HSPC145 /PROD=HSPC145 protein /DB_XREF=gi:7661805 /UG=Hs.18349 HSPC145 protein /FL=gb:AL136665.1 gb:BC000891.1 gb:AF161494.1 gb:NM_014175.1 NM_014175 mitochondrial ribosomal protein L15 MRPL15 29088 NM_014175 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 66.32 662.84 1.61 0.15 0.21 -4.57
201074_at 201074_at AA593983 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA593983 /FEA=EST /DB_XREF=gi:2409333 /DB_XREF=est:nn16d01.s1 /CLONE=IMAGE:1084033 /UG=Hs.172280 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 /FL=gb:U66615.1 gb:NM_003074.1 AA593983 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 SMARCC1 6599 NM_003074 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0001741 // XY body // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction 58.10 343.68 1.61 0.15 0.21 -4.57
213775_x_at 213775_x_at AI357871 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI357871 /FEA=EST /DB_XREF=gi:4109492 /DB_XREF=est:qv13b11.x1 /CLONE=IMAGE:1981437 /UG=Hs.169984 nuclear protein AI357871 zinc finger protein 638 /// ZNF638 intronic transcript 1 (non-protein coding) ZNF638 /// ZNF638-IT1 27332 /// 100507113 NM_001014972 /// NM_001252612 /// NM_001252613 /// NM_014497 /// XM_005264261 /// XM_005264262 /// XM_005264263 /// XM_005264264 /// XM_006711989 /// XM_006711990 /// XR_109944 /// XR_112334 /// XR_171302 /// XR_244928 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -43.62 270.56 -1.61 0.15 0.21 -4.57
221932_s_at 221932_s_at AA133341 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA133341 /FEA=EST /DB_XREF=gi:1690309 /DB_XREF=est:zn92h02.s1 /CLONE=IMAGE:565683 /UG=Hs.13201 clone FLB4739 AA133341 glutaredoxin 5 GLRX5 51218 NM_016417 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 41.20 179.62 1.61 0.15 0.21 -4.57
209066_x_at 209066_x_at M26700 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M26700.1 /DEF=Human mitochondrial ubiquinone-binding protein mRNA, complete cds. /FEA=mRNA /GEN=UQBP /DB_XREF=gi:190803 /UG=Hs.131255 ubiquinol-cytochrome c reductase binding protein /FL=gb:BC005230.1 gb:M26700.1 M26700 ubiquinol-cytochrome c reductase binding protein UQCRB 7381 NM_001199975 /// NM_001254752 /// NM_006294 /// NR_045639 /// XM_006716652 0006119 // oxidative phosphorylation // traceable author statement /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0009060 // aerobic respiration // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // traceable author statement /// 0005750 // mitochondrial respiratory chain complex III // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 123.78 671.26 1.61 0.15 0.21 -4.57
204359_at 204359_at NM_013231 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013231.1 /DEF=Homo sapiens fibronectin leucine rich transmembrane protein 2 (FLRT2), mRNA. /FEA=mRNA /GEN=FLRT2 /PROD=fibronectin leucine rich transmembrane protein2 /DB_XREF=gi:7019380 /UG=Hs.48998 fibronectin leucine rich transmembrane protein 2 /FL=gb:AB007865.1 gb:AF169676.1 gb:NM_013231.1 NM_013231 fibronectin leucine rich transmembrane protein 2 /// uncharacterized LOC100506718 FLRT2 /// LOC100506718 23768 /// 100506718 NM_013231 /// XM_005267489 /// XM_005267490 /// XM_006720095 /// XR_111450 /// XR_172052 /// XR_248023 /// XR_248024 /// XR_248025 /// XR_424524 /// XR_424525 /// XR_424526 /// XR_424527 /// XR_429303 /// XR_429304 /// XR_429305 /// XR_429306 /// XR_429307 /// XR_429308 /// XR_429309 /// XR_433009 /// XR_433010 /// XR_433011 /// XR_433012 /// XR_433013 0007155 // cell adhesion // inferred from electronic annotation /// 0035556 // intracellular signal transduction // non-traceable author statement 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005057 // receptor signaling protein activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // non-traceable author statement 36.90 324.75 1.61 0.15 0.21 -4.57
208612_at 208612_at D83485 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D83485.1 /DEF=Homo sapiens mRNA for ER-60 protease, complete cds. /FEA=mRNA /PROD=ER-60 protease /DB_XREF=gi:1208426 /UG=Hs.289101 glucose regulated protein, 58kD /FL=gb:U42068.1 gb:D83485.1 gb:D16234.1 gb:NM_005313.1 D83485 protein disulfide isomerase family A, member 3 PDIA3 2923 NM_005313 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006457 // protein folding // not recorded /// 0006457 // protein folding // traceable author statement /// 0006508 // proteolysis // traceable author statement /// 0006606 // protein import into nucleus // traceable author statement /// 0006621 // protein retention in ER lumen // traceable author statement /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // not recorded /// 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004629 // phospholipase C activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -151.97 1016.24 -1.61 0.15 0.21 -4.57
205289_at 205289_at AA583044 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA583044 /FEA=EST /DB_XREF=gi:2360404 /DB_XREF=est:nn80f11.s1 /CLONE=IMAGE:1090221 /UG=Hs.73853 bone morphogenetic protein 2 /FL=gb:NM_001200.1 AA583044 bone morphogenetic protein 2 BMP2 650 NM_001200 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000187 // activation of MAPK activity // inferred from direct assay /// 0001501 // skeletal system development // traceable author statement /// 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0002062 // chondrocyte differentiation // inferred from direct assay /// 0003130 // BMP signaling pathway involved in heart induction // inferred from direct assay /// 0003181 // atrioventricular valve morphogenesis // inferred from sequence or structural similarity /// 0003203 // endocardial cushion morphogenesis // inferred from sequence or structural similarity /// 0003308 // negative regulation of Wnt signaling pathway involved in heart development // inferred from direct assay /// 0006029 // proteoglycan metabolic process // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from sequence or structural similarity /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0009887 // organ morphogenesis // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0010894 // negative regulation of steroid biosynthetic process // inferred from direct assay /// 0010922 // positive regulation of phosphatase activity // inferred from direct assay /// 0021537 // telencephalon development // inferred from direct assay /// 0021978 // telencephalon regionalization // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // traceable author statement /// 0030282 // bone mineralization // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0030501 // positive regulation of bone mineralization // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from expression pattern /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // traceable author statement /// 0031648 // protein destabilization // inferred from electronic annotation /// 0032348 // negative regulation of aldosterone biosynthetic process // inferred from direct assay /// 0033690 // positive regulation of osteoblast proliferation // inferred from sequence or structural similarity /// 0035051 // cardiocyte differentiation // inferred from direct assay /// 0035051 // cardiocyte differentiation // inferred from mutant phenotype /// 0035054 // embryonic heart tube anterior/posterior pattern specification // inferred from sequence or structural similarity /// 0035630 // bone mineralization involved in bone maturation // inferred from direct assay /// 0040007 // growth // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from sequence or structural similarity /// 0042482 // positive regulation of odontogenesis // inferred from sequence or structural similarity /// 0042487 // regulation of odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from direct assay /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from direct assay /// 0045165 // cell fate commitment // inferred from sequence or structural similarity /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045778 // positive regulation of ossification // inferred from direct assay /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048711 // positive regulation of astrocyte differentiation // inferred from sequence or structural similarity /// 0048762 // mesenchymal cell differentiation // inferred from direct assay /// 0048839 // inner ear development // inferred from sequence or structural similarity /// 0051042 // negative regulation of calcium-independent cell-cell adhesion // inferred from direct assay /// 0051216 // cartilage development // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from mutant phenotype /// 0055008 // cardiac muscle tissue morphogenesis // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from sequence or structural similarity /// 0060039 // pericardium development // inferred from sequence or structural similarity /// 0060128 // corticotropin hormone secreting cell differentiation // inferred from sequence or structural similarity /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // inferred from direct assay /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0060395 // SMAD protein signal transduction // inferred from direct assay /// 0060485 // mesenchyme development // inferred from mutant phenotype /// 0060804 // positive regulation of Wnt signaling pathway by BMP signaling pathway // inferred from sequence or structural similarity /// 0061036 // positive regulation of cartilage development // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071773 // cellular response to BMP stimulus // inferred from direct assay /// 0072138 // mesenchymal cell proliferation involved in ureteric bud development // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from expression pattern /// 1900745 // positive regulation of p38MAPK cascade // inferred from direct assay /// 1901522 // positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus // inferred from direct assay /// 2000065 // negative regulation of cortisol biosynthetic process // inferred from direct assay /// 2000726 // negative regulation of cardiac muscle cell differentiation // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay 0004745 // retinol dehydrogenase activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0019211 // phosphatase activator activity // inferred from direct assay /// 0046332 // SMAD binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0070700 // BMP receptor binding // inferred from direct assay -29.70 106.83 -1.61 0.15 0.21 -4.57
206748_s_at 206748_s_at NM_003971 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003971.1 /DEF=Homo sapiens sperm associated antigen 9 (SPAG9), mRNA. /FEA=mRNA /GEN=SPAG9 /PROD=sperm associated antigen 9 /DB_XREF=gi:4504524 /UG=Hs.129872 sperm associated antigen 9 /FL=gb:NM_003971.1 NM_003971 sperm associated antigen 9 SPAG9 9043 NM_001130527 /// NM_001130528 /// NM_001251971 /// NM_003971 /// NM_172345 /// XM_005257767 /// XM_005257768 /// XM_005257769 /// XM_005257770 /// XM_005257771 /// XM_005257772 /// XM_005257773 /// XM_005257774 /// XM_006722163 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay /// 0042692 // muscle cell differentiation // traceable author statement /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0090074 // negative regulation of protein homodimerization activity // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016021 // integral component of membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008432 // JUN kinase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0048273 // mitogen-activated protein kinase p38 binding // inferred from electronic annotation -22.72 101.19 -1.60 0.15 0.21 -4.57
214394_x_at 214394_x_at AI613383 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI613383 /FEA=EST /DB_XREF=gi:4622550 /DB_XREF=est:tt80e08.x1 /CLONE=IMAGE:2247110 /UG=Hs.223241 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) AI613383 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) EEF1D 1936 NM_001130053 /// NM_001130054 /// NM_001130055 /// NM_001130056 /// NM_001130057 /// NM_001195203 /// NM_001289950 /// NM_001960 /// NM_032378 /// XM_005250820 /// XM_005250821 /// XM_005250823 /// XM_005250824 /// XM_005250825 /// XM_005250826 /// XM_006716519 /// XM_006716520 /// XM_006716521 /// XM_006716522 /// XM_006716523 /// XM_006716524 /// XM_006716525 /// XM_006725064 /// XM_006725065 /// XM_006725066 /// XM_006725067 /// XM_006725068 /// XM_006725069 /// XM_006725070 /// XM_006725071 /// XM_006725072 /// XM_006725073 /// XM_006725074 /// XM_006725075 /// XM_006725076 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0007165 // signal transduction // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement 171.73 829.51 1.60 0.15 0.21 -4.57
71933_at 71933_at AI218134 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI218134:qh27f10.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-1845931 /clone_end=3' /gb=AI218134 /gi=3797949 /ug=Hs.220783 /len=499 AI218134 wingless-type MMTV integration site family, member 6 WNT6 7475 NM_006522 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0007267 // cell-cell signaling // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009798 // axis specification // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0016055 // Wnt signaling pathway // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from sequence or structural similarity /// 0042475 // odontogenesis of dentin-containing tooth // inferred from mutant phenotype /// 0045165 // cell fate commitment // not recorded /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0060684 // epithelial-mesenchymal cell signaling // inferred from electronic annotation /// 0061303 // cornea development in camera-type eye // inferred from sequence or structural similarity /// 0070172 // positive regulation of tooth mineralization // inferred from mutant phenotype /// 0071300 // cellular response to retinoic acid // inferred from sequence or structural similarity /// 0072079 // nephron tubule formation // inferred from electronic annotation /// 0072080 // nephron tubule development // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005109 // frizzled binding // not recorded -32.70 209.95 -1.60 0.15 0.21 -4.57
218520_at 218520_at NM_013254 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013254.1 /DEF=Homo sapiens TANK-binding kinase 1 (TBK1), mRNA. /FEA=mRNA /GEN=TBK1 /PROD=TANK-binding kinase 1 /DB_XREF=gi:7019546 /UG=Hs.21712 TANK-binding kinase 1 /FL=gb:AF191838.1 gb:NM_013254.1 gb:AF174536.1 NM_013254 TANK-binding kinase 1 TBK1 29110 NM_013254 /// XM_005268809 /// XM_005268810 0002218 // activation of innate immune response // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032606 // type I interferon production // traceable author statement /// 0032727 // positive regulation of interferon-alpha production // inferred from direct assay /// 0032728 // positive regulation of interferon-beta production // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // non-traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0045087 // innate immune response // traceable author statement /// 0045359 // positive regulation of interferon-beta biosynthetic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-traceable author statement /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction -34.08 196.96 -1.60 0.15 0.21 -4.57
202043_s_at 202043_s_at NM_004595 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004595.1 /DEF=Homo sapiens spermine synthase (SMS), mRNA. /FEA=mRNA /GEN=SMS /PROD=spermine synthase /DB_XREF=gi:4759151 /UG=Hs.89718 spermine synthase /FL=gb:AD001528.1 gb:NM_004595.1 NM_004595 spermine synthase SMS 6611 NM_001258423 /// NM_004595 /// XM_005274582 /// XM_005274583 0006555 // methionine metabolic process // traceable author statement /// 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0006597 // spermine biosynthetic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004766 // spermidine synthase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016768 // spermine synthase activity // inferred from electronic annotation -32.68 377.51 -1.60 0.15 0.21 -4.57
200024_at 200024_at NM_001009 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001009.1 /DEF=Homo sapiens ribosomal protein S5 (RPS5), mRNA. /FEA=mRNA /GEN=RPS5 /PROD=ribosomal protein S5 /DB_XREF=gi:4506728 /UG=Hs.76194 ribosomal protein S5 /FL=gb:NM_001009.1 gb:U14970.1 NM_001009 ribosomal protein S5 RPS5 6193 NM_001009 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from genetic interaction /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006450 // regulation of translational fidelity // inferred from genetic interaction /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -218.05 2148.65 -1.60 0.15 0.21 -4.57
201551_s_at 201551_s_at J03263 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J03263.1 /DEF=Human lysosome-associated membrane glycoprotein (lamp A) mRNA, complete cds. /FEA=mRNA /GEN=LAMP1 /DB_XREF=gi:187178 /UG=Hs.150101 lysosomal-associated membrane protein 1 /FL=gb:J04182.1 gb:J03263.1 gb:NM_005561.2 J03263 lysosomal-associated membrane protein 1 LAMP1 3916 NM_005561 0006914 // autophagy // inferred from electronic annotation /// 0008626 // granzyme-mediated apoptotic signaling pathway // inferred from mutant phenotype /// 0043323 // positive regulation of natural killer cell degranulation // inferred from mutant phenotype /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0048102 // autophagic cell death // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0072594 // establishment of protein localization to organelle // inferred from mutant phenotype /// 0090160 // Golgi to lysosome transport // inferred from mutant phenotype /// 1902513 // regulation of organelle transport along microtubule // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005773 // vacuole // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044194 // cytolytic granule // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097208 // alveolar lamellar body // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction -81.08 432.26 -1.60 0.15 0.21 -4.57
201772_at 201772_at NM_015878 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015878.1 /DEF=Homo sapiens antizyme inhibitor (LOC51582), mRNA. /FEA=mRNA /GEN=LOC51582 /PROD=antizyme inhibitor /DB_XREF=gi:7706219 /UG=Hs.223014 antizyme inhibitor /FL=gb:D88674.1 gb:NM_015878.1 NM_015878 antizyme inhibitor 1 AZIN1 51582 NM_015878 /// NM_148174 /// XM_005250969 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042177 // negative regulation of protein catabolic process // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // traceable author statement /// 0042978 // ornithine decarboxylase activator activity // inferred from electronic annotation 31.55 169.53 1.60 0.15 0.22 -4.57
211965_at 211965_at BE620915 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE620915 /FEA=EST /DB_XREF=gi:9891853 /DB_XREF=est:601483777T1 /CLONE=IMAGE:3886194 /UG=Hs.85155 butyrate response factor 1 (EGF-response factor 1) BE620915 ZFP36 ring finger protein-like 1 ZFP36L1 677 NM_001244698 /// NM_001244701 /// NM_004926 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -23.50 62.95 -1.59 0.15 0.22 -4.57
217775_s_at 217775_s_at NM_016026 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016026.1 /DEF=Homo sapiens CGI-82 protein (LOC51109), mRNA. /FEA=mRNA /GEN=LOC51109 /PROD=CGI-82 protein /DB_XREF=gi:7705790 /UG=Hs.179817 CGI-82 protein /FL=gb:BC000112.1 gb:AF151840.1 gb:NM_016026.1 gb:AF167438.1 NM_016026 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) RDH11 51109 NM_001252650 /// NM_016026 0001523 // retinoid metabolic process // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016062 // adaptation of rhodopsin mediated signaling // inferred from electronic annotation /// 0042572 // retinol metabolic process // inferred from sequence or structural similarity /// 0042574 // retinal metabolic process // inferred from direct assay /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005622 // intracellular // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0052650 // NADP-retinol dehydrogenase activity // inferred from direct assay 19.62 101.26 1.59 0.15 0.22 -4.57
208610_s_at 208610_s_at AI655799 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI655799 /FEA=EST /DB_XREF=gi:4739778 /DB_XREF=est:tt40a10.x1 /CLONE=IMAGE:2243226 /UG=Hs.197114 RNA binding protein; AT-rich element binding factor /FL=gb:AB016092.1 AI655799 serine/arginine repetitive matrix 2 SRRM2 23524 NM_016333 /// XM_005255225 /// XM_005255226 /// XM_005255227 /// XM_006720872 /// XM_006720873 /// XM_006720874 /// XR_243270 /// XR_243271 /// XR_429640 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0070742 // C2H2 zinc finger domain binding // inferred from direct assay 21.45 154.20 1.59 0.15 0.22 -4.57
201107_s_at 201107_s_at AI812030 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI812030 /FEA=EST /DB_XREF=gi:5398596 /DB_XREF=est:tw46c12.x1 /CLONE=IMAGE:2262742 /UG=Hs.87409 thrombospondin 1 /FL=gb:NM_003246.1 AI812030 thrombospondin 1 THBS1 7057 NM_003246 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0001666 // response to hypoxia // non-traceable author statement /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001953 // negative regulation of cell-matrix adhesion // inferred from direct assay /// 0002040 // sprouting angiogenesis // inferred from mutant phenotype /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0002576 // platelet degranulation // traceable author statement /// 0002581 // negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from direct assay /// 0002605 // negative regulation of dendritic cell antigen processing and presentation // inferred from direct assay /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003197 // endocardial cushion development // inferred from electronic annotation /// 0003417 // growth plate cartilage development // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from expression pattern /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007155 // cell adhesion // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010596 // negative regulation of endothelial cell migration // inferred from direct assay /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from direct assay /// 0010751 // negative regulation of nitric oxide mediated signal transduction // inferred from direct assay /// 0010754 // negative regulation of cGMP-mediated signaling // inferred from direct assay /// 0010757 // negative regulation of plasminogen activation // inferred from direct assay /// 0010759 // positive regulation of macrophage chemotaxis // inferred from sequence or structural similarity /// 0010763 // positive regulation of fibroblast migration // inferred from direct assay /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0018149 // peptide cross-linking // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030194 // positive regulation of blood coagulation // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032570 // response to progesterone // traceable author statement /// 0032695 // negative regulation of interleukin-12 production // inferred from direct assay /// 0032914 // positive regulation of transforming growth factor beta1 production // inferred from sequence or structural similarity /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034605 // cellular response to heat // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from direct assay /// 0043032 // positive regulation of macrophage activation // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043652 // engulfment of apoptotic cell // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0048266 // behavioral response to pain // inferred from sequence or structural similarity /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050921 // positive regulation of chemotaxis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay /// 0051895 // negative regulation of focal adhesion assembly // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0051918 // negative regulation of fibrinolysis // inferred from direct assay /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071636 // positive regulation of transforming growth factor beta production // inferred from electronic annotation /// 1900119 // positive regulation of execution phase of apoptosis // inferred from direct assay /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from direct assay /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity /// 0030141 // secretory granule // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // traceable author statement /// 0031091 // platelet alpha granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001786 // phosphatidylserine binding // inferred from direct assay /// 0001948 // glycoprotein binding // non-traceable author statement /// 0001968 // fibronectin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from mutant phenotype /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from direct assay /// 0017134 // fibroblast growth factor binding // inferred from direct assay /// 0030169 // low-density lipoprotein particle binding // inferred from direct assay /// 0042802 // identical protein binding // non-traceable author statement /// 0043236 // laminin binding // inferred from direct assay /// 0043394 // proteoglycan binding // traceable author statement /// 0050431 // transforming growth factor beta binding // inferred from sequence or structural similarity /// 0050431 // transforming growth factor beta binding // traceable author statement /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0070051 // fibrinogen binding // inferred from direct assay /// 0070052 // collagen V binding // inferred from direct assay -140.65 507.57 -1.59 0.15 0.22 -4.57
217753_s_at 217753_s_at NM_001029 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001029.1 /DEF=Homo sapiens ribosomal protein S26 (RPS26), mRNA. /FEA=mRNA /GEN=RPS26 /PROD=ribosomal protein S26 /DB_XREF=gi:4506708 /UG=Hs.299465 ribosomal protein S26 /FL=gb:BC002604.1 gb:NM_001029.1 NM_001029 40S ribosomal protein S26-like /// 40S ribosomal protein S26-like /// ribosomal protein S26 /// ribosomal protein S26 pseudogene 11 LOC100996747 /// LOC101929876 /// RPS26 /// RPS26P11 6231 /// 441502 /// 100996747 /// 101929876 NM_001029 /// NR_002309 /// XM_003846538 /// XM_005276684 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 160.50 1468.62 1.59 0.15 0.22 -4.57
218076_s_at 218076_s_at NM_018054 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018054.1 /DEF=Homo sapiens homolog of rat nadrin (FLJ10308), mRNA. /FEA=mRNA /GEN=FLJ10308 /PROD=homolog of rat nadrin /DB_XREF=gi:8922343 /UG=Hs.14169 homolog of rat nadrin /FL=gb:AF113218.1 gb:NM_018054.1 NM_018054 Rho GTPase activating protein 17 ARHGAP17 55114 NM_001006634 /// NM_018054 /// XM_005255413 /// XM_005255414 /// XM_006721057 /// XM_006721058 /// XM_006721059 /// XM_006721060 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation 89.03 355.09 1.59 0.15 0.22 -4.57
200738_s_at 200738_s_at NM_000291 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000291.1 /DEF=Homo sapiens phosphoglycerate kinase 1 (PGK1), mRNA. /FEA=mRNA /GEN=PGK1 /PROD=phosphoglycerate kinase 1 /DB_XREF=gi:4505762 /UG=Hs.78771 phosphoglycerate kinase 1 /FL=gb:NM_000291.1 NM_000291 phosphoglycerate kinase 1 PGK1 5230 NM_000291 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0006096 // glycolytic process // traceable author statement /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004618 // phosphoglycerate kinase activity // not recorded /// 0004618 // phosphoglycerate kinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -123.73 1320.11 -1.59 0.15 0.22 -4.57
213614_x_at 213614_x_at BE786672 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE786672 /FEA=EST /DB_XREF=gi:10207870 /DB_XREF=est:601475022F1 /CLONE=IMAGE:3878140 /UG=Hs.284136 PRO2047 protein BE786672 eukaryotic translation elongation factor 1 alpha 1 EEF1A1 1915 NM_001402 /// NM_001403 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -667.48 4635.96 -1.59 0.15 0.22 -4.57
201012_at 201012_at NM_000700 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000700.1 /DEF=Homo sapiens annexin A1 (ANXA1), mRNA. /FEA=mRNA /GEN=ANXA1 /PROD=annexin I /DB_XREF=gi:4502100 /UG=Hs.78225 annexin A1 /FL=gb:BC001275.1 gb:NM_000700.1 NM_000700 annexin A1 ANXA1 301 NM_000700 0001780 // neutrophil homeostasis // inferred from mutant phenotype /// 0002674 // negative regulation of acute inflammatory response // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0018149 // peptide cross-linking // inferred from direct assay /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from direct assay /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // inferred from direct assay /// 0031394 // positive regulation of prostaglandin biosynthetic process // inferred from electronic annotation /// 0031960 // response to corticosteroid // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033031 // positive regulation of neutrophil apoptotic process // inferred from electronic annotation /// 0042063 // gliogenesis // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0046632 // alpha-beta T cell differentiation // inferred from sequence or structural similarity /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050709 // negative regulation of protein secretion // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0060206 // estrous cycle phase // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0070365 // hepatocyte differentiation // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0071385 // cellular response to glucocorticoid stimulus // inferred from direct assay /// 0097350 // neutrophil clearance // inferred from mutant phenotype /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 2000483 // negative regulation of interleukin-8 secretion // inferred from mutant phenotype 0001533 // cornified envelope // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005929 // cilium // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // traceable author statement /// 0005198 // structural molecule activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // traceable author statement /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0030674 // protein binding, bridging // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -114.83 1772.14 -1.59 0.15 0.22 -4.57
201861_s_at 201861_s_at BF965566 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF965566 /FEA=EST /DB_XREF=gi:12332781 /DB_XREF=est:602277032F1 /CLONE=IMAGE:4364790 /UG=Hs.326159 leucine rich repeat (in FLII) interacting protein 1 /FL=gb:NM_004735.1 BF965566 leucine rich repeat (in FLII) interacting protein 1 LRRFIP1 9208 NM_001137550 /// NM_001137551 /// NM_001137552 /// NM_001137553 /// NM_004735 /// XM_005246112 /// XM_005246113 /// XM_005246114 /// XM_005246115 /// XM_005246116 /// XM_005246117 /// XM_005246118 /// XM_005246119 /// XM_005246120 /// XM_005246121 /// XM_005246122 /// XM_005246123 /// XM_005246124 /// XM_005246125 /// XM_005246126 /// XM_005246127 /// XM_005246128 /// XM_005246129 /// XM_005246130 /// XM_005246131 /// XM_005246132 /// XM_005246133 /// XM_005246134 /// XM_005246135 /// XM_005246136 /// XM_005246137 /// XM_005246138 /// XM_005246139 /// XM_005246140 /// XM_005246141 /// XM_005246142 /// XM_006712840 /// XM_006712841 /// XM_006712842 /// XM_006712843 /// XM_006712844 /// XM_006712845 /// XM_006712846 /// XM_006712847 /// XM_006712848 /// XM_006712849 /// XM_006712850 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay -23.97 122.79 -1.58 0.16 0.22 -4.57
212012_at 212012_at BF342851 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF342851 /FEA=EST /DB_XREF=gi:11289878 /DB_XREF=est:602015135F1 /CLONE=IMAGE:4150664 /UG=Hs.118893 Melanoma associated gene BF342851 peroxidasin homolog (Drosophila) PXDN 7837 NM_012293 /// XM_005264707 /// XM_006711896 0001960 // negative regulation of cytokine-mediated signaling pathway // non-traceable author statement /// 0006955 // immune response // non-traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from direct assay /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay 0004601 // peroxidase activity // inferred from direct assay /// 0005152 // interleukin-1 receptor antagonist activity // non-traceable author statement /// 0005201 // extracellular matrix structural constituent // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -92.55 743.38 -1.58 0.16 0.22 -4.57
219960_s_at 219960_s_at NM_015984 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015984.1 /DEF=Homo sapiens ubiquitin C-terminal hydrolase UCH37 (UCH37), mRNA. /FEA=mRNA /GEN=UCH37 /PROD=ubiquitin C-terminal hydrolase UCH37 /DB_XREF=gi:7706752 /UG=Hs.171581 ubiquitin C-terminal hydrolase UCH37 /FL=gb:AF147717.1 gb:NM_015984.1 NM_015984 ubiquitin carboxyl-terminal hydrolase L5 UCHL5 51377 NM_001199261 /// NM_001199262 /// NM_001199263 /// NM_015984 /// NR_037607 /// XM_005245244 /// XM_005245245 /// XM_005245246 /// XM_005245247 /// XM_005245248 /// XM_005245249 /// XM_006711366 /// XM_006711367 /// XM_006711368 /// XM_006711369 /// XM_006711370 /// XM_006711371 /// XM_006711372 /// XM_006711373 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0010951 // negative regulation of endopeptidase activity // inferred from mutant phenotype /// 0016579 // protein deubiquitination // inferred from direct assay /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030901 // midbrain development // inferred from electronic annotation /// 0048853 // forebrain morphogenesis // inferred from electronic annotation /// 0061136 // regulation of proteasomal protein catabolic process // inferred from mutant phenotype 0000502 // proteasome complex // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0031011 // Ino80 complex // inferred from direct assay 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004866 // endopeptidase inhibitor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070628 // proteasome binding // inferred from direct assay 24.12 218.19 1.58 0.16 0.22 -4.57
217728_at 217728_at NM_014624 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014624.2 /DEF=Homo sapiens S100 calcium-binding protein A6 (calcyclin) (S100A6), mRNA. /FEA=mRNA /GEN=S100A6 /PROD=S100 calcium-binding protein A6 /DB_XREF=gi:9845517 /UG=Hs.275243 S100 calcium-binding protein A6 (calcyclin) /FL=gb:BC001431.1 gb:NM_014624.2 NM_014624 S100 calcium binding protein A6 S100A6 6277 NM_014624 0007165 // signal transduction // traceable author statement /// 0007409 // axonogenesis // non-traceable author statement /// 0034220 // ion transmembrane transport // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // non-traceable author statement 0001726 // ruffle // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005523 // tropomyosin binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0044548 // S100 protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from direct assay 289.62 2109.64 1.58 0.16 0.22 -4.57
212346_s_at 212346_s_at AK026392 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026392.1 /DEF=Homo sapiens cDNA: FLJ22739 fis, clone HUV00686. /FEA=mRNA /DB_XREF=gi:10439242 /UG=Hs.102402 Mad4 homolog AK026392 microRNA 4800 /// MAX dimerization protein 4 MIR4800 /// MXD4 10608 /// 100616358 NM_006454 /// NR_039964 /// XR_427467 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 26.05 70.17 1.58 0.16 0.22 -4.57
200729_s_at 200729_s_at NM_005722 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005722.1 /DEF=Homo sapiens ARP2 (actin-related protein 2, yeast) homolog (ACTR2), mRNA. /FEA=mRNA /GEN=ACTR2 /PROD=ARP2 (actin-related protein 2, yeast) homolog /DB_XREF=gi:5031570 /UG=Hs.42915 ARP2 (actin-related protein 2, yeast) homolog /FL=gb:AF006082.1 gb:NM_005722.1 NM_005722 ARP2 actin-related protein 2 homolog (yeast) ACTR2 10097 NM_001005386 /// NM_005722 0006928 // cellular component movement // traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0008356 // asymmetric cell division // inferred from electronic annotation /// 0016482 // cytoplasmic transport // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0033206 // meiotic cytokinesis // inferred from electronic annotation /// 0034314 // Arp2/3 complex-mediated actin nucleation // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051321 // meiotic cell cycle // inferred from electronic annotation /// 0051653 // spindle localization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // inferred from reviewed computational analysis /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030478 // actin cap // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 60.28 564.49 1.57 0.16 0.22 -4.57
217932_at 217932_at NM_015971 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015971.1 /DEF=Homo sapiens 30S ribosomal protein S7 homolog (LOC51081), mRNA. /FEA=mRNA /GEN=LOC51081 /PROD=30S ribosomal protein S7 homolog /DB_XREF=gi:7705737 /UG=Hs.71787 30S ribosomal protein S7 homolog /FL=gb:BC000241.1 gb:AF077042.1 gb:NM_015971.1 NM_015971 mitochondrial ribosomal protein S7 MRPS7 51081 NM_015971 /// XM_005257424 0006412 // translation // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay 24.05 189.18 1.57 0.16 0.22 -4.57
203647_s_at 203647_s_at M18003 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M18003.1 /DEF=Human ferredoxin mRNA, complete cds. /FEA=mRNA /PROD=ferredoxin /DB_XREF=gi:182493 /UG=Hs.744 ferredoxin 1 /FL=gb:NM_004109.2 gb:J03548.1 gb:M18003.1 gb:M34788.1 M18003 ferredoxin 1 FDX1 2230 NM_004109 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from direct assay /// 0042446 // hormone biosynthetic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0005506 // iron ion binding // traceable author statement /// 0009055 // electron carrier activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay 34.82 191.66 1.57 0.16 0.22 -4.57
200098_s_at 200098_s_at T33068 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:T33068 /FEA=EST /DB_XREF=gi:615166 /DB_XREF=est:EST56576 /UG=Hs.7101 anaphase-promoting complex subunit 5 T33068 anaphase promoting complex subunit 5 ANAPC5 51433 NM_001137559 /// NM_016237 /// XM_005253900 /// XM_006719449 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000090 // mitotic anaphase // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction 71.53 472.59 1.57 0.16 0.22 -4.57
160020_at 160020_at Z48481 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Z48481 /FEATURE=cds /DEFINITION=HSMMPM1 H.sapiens mRNA for membrane-type matrix metalloproteinase 1 /NOTE=replacement of probe set 1301_s_at Z48481 matrix metallopeptidase 14 (membrane-inserted) MMP14 4323 NM_004995 0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030574 // collagen catabolic process // traceable author statement /// 0031638 // zymogen activation // inferred from electronic annotation /// 0043615 // astrocyte cell migration // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 58.58 334.14 1.57 0.16 0.22 -4.57
201946_s_at 201946_s_at AL545982 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL545982 /FEA=EST /DB_XREF=gi:12878676 /DB_XREF=est:AL545982 /CLONE=CS0DI023YD15 (5 prime) /UG=Hs.6456 chaperonin containing TCP1, subunit 2 (beta) /FL=gb:AF026293.1 gb:AF026166.1 gb:NM_006431.1 AL545982 chaperonin containing TCP1, subunit 2 (beta) CCT2 10576 NM_001198842 /// NM_006431 0006457 // protein folding // non-traceable author statement /// 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051131 // chaperone-mediated protein complex assembly // inferred from mutant phenotype 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // non-traceable author statement 83.00 615.88 1.57 0.16 0.22 -4.57
209069_s_at 209069_s_at BC001124 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001124.1 /DEF=Homo sapiens, H3 histone, family 3A, clone MGC:2161, mRNA, complete cds. /FEA=mRNA /PROD=H3 histone, family 3A /DB_XREF=gi:12654576 /UG=Hs.181307 H3 histone, family 3A /FL=gb:BC001124.1 BC001124 H3 histone, family 3A /// H3 histone, family 3B (H3.3B) /// microRNA 4738 H3F3A /// H3F3B /// MIR4738 3020 /// 3021 /// 100616282 NM_002107 /// NM_005324 /// NR_039892 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -103.78 1169.91 -1.57 0.16 0.22 -4.57
209109_s_at 209109_s_at U84895 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U84895.1 /DEF=Human transmembrane 4 superfamily A15 homolog mRNA, complete cds. /FEA=mRNA /PROD=A15 homolog /DB_XREF=gi:4099210 /UG=Hs.121068 transmembrane 4 superfamily member 6 /FL=gb:AF043906.1 gb:AF053453.1 gb:U84895.1 gb:NM_003270.1 gb:AF133426.1 U84895 tetraspanin 6 TSPAN6 7105 NM_001278740 /// NM_001278741 /// NM_001278742 /// NM_001278743 /// NM_003270 0007165 // signal transduction // inferred from mutant phenotype /// 0039532 // negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 1901223 // negative regulation of NIK/NF-kappaB signaling // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction 59.65 253.20 1.56 0.16 0.22 -4.57
201922_at 201922_at NM_014886 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014886.1 /DEF=Homo sapiens hypothetical protein (YR-29), mRNA. /FEA=mRNA /GEN=YR-29 /PROD=hypothetical protein /DB_XREF=gi:7662676 /UG=Hs.8170 hypothetical protein /FL=gb:AF077615.1 gb:BC005288.1 gb:NM_014886.1 NM_014886 NSA2 ribosome biogenesis homolog (S. cerevisiae) NSA2 10412 NM_001271665 /// NM_014886 /// NR_073403 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay -31.20 509.62 -1.56 0.16 0.22 -4.57
213627_at 213627_at AI924630 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI924630 /FEA=EST /DB_XREF=gi:5660594 /DB_XREF=est:wn57e10.x1 /CLONE=IMAGE:2449578 /UG=Hs.4943 hepatocellular carcinoma associated protein; breast cancer associated gene 1 AI924630 melanoma antigen family D, 2 MAGED2 10916 NM_014599 /// NM_177433 /// NM_201222 0016020 // membrane // inferred from direct assay 122.05 248.10 1.56 0.16 0.22 -4.57
56197_at 56197_at AI783924 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI783924:tr30e11.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2219852 /clone_end=3' /gb=AI783924 /gi=5325733 /ug=Hs.103382 /len=539 AI783924 phospholipid scramblase 3 /// TMEM256-PLSCR3 readthrough (NMD candidate) PLSCR3 /// TMEM256-PLSCR3 57048 /// 100529211 NM_001201576 /// NM_020360 /// NR_037719 0006915 // apoptotic process // inferred from electronic annotation /// 0017121 // phospholipid scrambling // non-traceable author statement /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017128 // phospholipid scramblase activity // non-traceable author statement /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -47.50 640.60 -1.56 0.16 0.23 -4.57
209372_x_at 209372_x_at BF971587 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF971587 /FEA=EST /DB_XREF=gi:12338802 /DB_XREF=est:602239834F1 /CLONE=IMAGE:4328385 /UG=Hs.179661 tubulin, beta polypeptide /FL=gb:BC001352.1 BF971587 tubulin, beta 2A class IIa /// tubulin, beta 2B class IIb TUBB2A /// TUBB2B 7280 /// 347733 NM_001069 /// NM_178012 0001764 // neuron migration // inferred from mutant phenotype /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 26.83 86.79 1.56 0.16 0.23 -4.57
203202_at 203202_at AI950314 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI950314 /FEA=EST /DB_XREF=gi:5742624 /DB_XREF=est:wp08c11.x1 /CLONE=IMAGE:2464244 /UG=Hs.154762 HIV-1 rev binding protein 2 /FL=gb:U55766.1 gb:NM_007043.1 AI950314 KRR1, small subunit (SSU) processome component, homolog (yeast) KRR1 11103 NM_007043 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045171 // intercellular bridge // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 19.55 118.03 1.56 0.16 0.23 -4.57
208796_s_at 208796_s_at BC000196 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000196.1 /DEF=Homo sapiens, cyclin G1, clone MGC:643, mRNA, complete cds. /FEA=mRNA /PROD=cyclin G1 /DB_XREF=gi:12652880 /UG=Hs.79101 cyclin G1 /FL=gb:L49504.1 gb:U47413.1 gb:BC000196.1 gb:D78341.1 gb:NM_004060.2 BC000196 cyclin G1 CCNG1 900 NM_004060 /// NM_199246 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0006949 // syncytium formation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007095 // mitotic G2 DNA damage checkpoint // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0016049 // cell growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation 78.02 670.56 1.56 0.16 0.23 -4.57
202669_s_at 202669_s_at U16797 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U16797.1 /DEF=Human LERK-5 (EPLG5) mRNA, complete cds. /FEA=mRNA /GEN=EPLG5 /PROD=LERK-5 /DB_XREF=gi:902370 /UG=Hs.30942 ephrin-B2 /FL=gb:U81262.1 gb:NM_004093.1 gb:L38734.1 gb:U16797.1 U16797 ephrin-B2 EFNB2 1948 NM_004093 0001525 // angiogenesis // inferred from electronic annotation /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0007155 // cell adhesion // inferred from direct assay /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010839 // negative regulation of keratinocyte proliferation // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050920 // regulation of chemotaxis // inferred from direct assay /// 2000727 // positive regulation of cardiac muscle cell differentiation // inferred from sequence or structural similarity 0005886 // plasma membrane // not recorded /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046875 // ephrin receptor binding // inferred from physical interaction -50.82 148.91 -1.56 0.16 0.23 -4.57
219220_x_at 219220_x_at NM_020191 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020191.1 /DEF=Homo sapiens GK002 protein (GK002), mRNA. /FEA=mRNA /GEN=GK002 /PROD=GK002 protein /DB_XREF=gi:9910243 /UG=Hs.107127 GK002 protein; gibt protein; chromosome 3 open reading frame 5 /FL=gb:AF321613.1 gb:AF226045.1 gb:NM_020191.1 NM_020191 mitochondrial ribosomal protein S22 MRPS22 56945 NM_020191 /// XM_005247640 /// XM_006713703 0005739 // mitochondrion // inferred from direct assay /// 0005761 // mitochondrial ribosome // non-traceable author statement /// 0005763 // mitochondrial small ribosomal subunit // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from direct assay 26.87 227.34 1.56 0.16 0.23 -4.57
203041_s_at 203041_s_at J04183 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J04183.1 /DEF=Homo sapiens lysosomal membrane glycoprotein-2 (LAMP2), complete cds. /FEA=mRNA /GEN=LAMP2 /PROD=lysosomal membrane glycoprotein-2 /DB_XREF=gi:186929 /UG=Hs.8262 lysosomal-associated membrane protein 2 /FL=gb:J04183.1 gb:NM_002294.1 J04183 lysosomal-associated membrane protein 2 LAMP2 3920 NM_001122606 /// NM_002294 /// NM_013995 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0050821 // protein stabilization // inferred from sequence or structural similarity 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031088 // platelet dense granule membrane // inferred from direct assay /// 0031088 // platelet dense granule membrane // traceable author statement /// 0031902 // late endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0019899 // enzyme binding // inferred from physical interaction -52.35 394.32 -1.56 0.16 0.23 -4.57
217817_at 217817_at BE891920 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE891920 /FEA=EST /DB_XREF=gi:10351728 /DB_XREF=est:601435490F1 /CLONE=IMAGE:3920590 /UG=Hs.323342 actin related protein 23 complex, subunit 4 (20 kD) /FL=gb:AF006087.1 gb:NM_005718.1 BE891920 actin related protein 2/3 complex, subunit 4, 20kDa ARPC4 10093 NM_001024959 /// NM_001024960 /// NM_001198780 /// NM_005718 0030041 // actin filament polymerization // inferred from electronic annotation /// 0034314 // Arp2/3 complex-mediated actin nucleation // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045010 // actin nucleation // non-traceable author statement /// 0045087 // innate immune response // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from physical interaction /// 0051015 // actin filament binding // non-traceable author statement 90.12 105.86 1.55 0.16 0.23 -4.57
200827_at 200827_at NM_000302 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000302.1 /DEF=Homo sapiens procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI) (PLOD), mRNA. /FEA=mRNA /GEN=PLOD /PROD=procollagen-lysine 5-dioxygenase /DB_XREF=gi:4557836 /UG=Hs.75093 procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI) /FL=gb:L06419.1 gb:NM_000302.1 NM_000302 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 PLOD1 5351 NM_000302 0001666 // response to hypoxia // inferred from expression pattern /// 0006464 // cellular protein modification process // non-traceable author statement /// 0008544 // epidermis development // inferred from mutant phenotype /// 0008544 // epidermis development // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0046947 // hydroxylysine biosynthetic process // traceable author statement /// 0055114 // oxidation-reduction process // traceable author statement 0005581 // collagen trimer // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005506 // iron ion binding // inferred from electronic annotation /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation -40.15 336.23 -1.55 0.16 0.23 -4.57
210564_x_at 210564_x_at AF009619 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF009619.1 /DEF=Homo sapiens FLAME-1-delta mRNA, alternatively spliced, complete cds. /FEA=mRNA /PROD=FLAME-1-delta /DB_XREF=gi:2429159 /UG=Hs.195175 CASP8 and FADD-like apoptosis regulator /FL=gb:AF009619.1 AF009619 CASP8 and FADD-like apoptosis regulator CFLAR 8837 NM_001127183 /// NM_001127184 /// NM_001202515 /// NM_001202516 /// NM_001202517 /// NM_001202518 /// NM_001202519 /// NM_003879 /// XM_005246935 /// XM_005246936 /// XM_005246937 /// XM_005246938 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0014732 // skeletal muscle atrophy // inferred from sequence or structural similarity /// 0014842 // regulation of satellite cell proliferation // inferred from sequence or structural similarity /// 0014866 // skeletal myofibril assembly // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043403 // skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0060544 // regulation of necroptotic process // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1901740 // negative regulation of myoblast fusion // inferred from sequence or structural similarity /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031264 // death-inducing signaling complex // inferred from direct assay /// 0031265 // CD95 death-inducing signaling complex // inferred from electronic annotation /// 0097342 // ripoptosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0035877 // death effector domain binding // not recorded -25.58 146.94 -1.55 0.16 0.23 -4.57
213513_x_at 213513_x_at BG034239 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG034239 /FEA=EST /DB_XREF=gi:12427339 /DB_XREF=est:602302301F1 /CLONE=IMAGE:4403617 /UG=Hs.252280 Rho guanine nucleotide exchange factor (GEF) 1 BG034239 actin related protein 2/3 complex, subunit 2, 34kDa ARPC2 10109 NM_005731 /// NM_152862 /// XM_006712173 0006928 // cellular component movement // traceable author statement /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019894 // kinesin binding // inferred from electronic annotation /// 0035650 // AP-1 adaptor complex binding // inferred from electronic annotation /// 0071933 // Arp2/3 complex binding // inferred from electronic annotation -61.05 746.88 -1.55 0.16 0.23 -4.57
206920_s_at 206920_s_at NM_001499 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001499.1 /DEF=Homo sapiens GLE1 (yeast homolog)-like, RNA export mediator (GLE1L), mRNA. /FEA=mRNA /GEN=GLE1L /PROD=GLE1-like, RNA export mediator /DB_XREF=gi:4557626 /UG=Hs.169363 GLE1 (yeast homolog)-like, RNA export mediator /FL=gb:AF058922.1 gb:NM_001499.1 NM_001499 GLE1 RNA export mediator GLE1 2733 NM_001003722 /// NM_001499 /// XM_005251925 /// XM_006717058 /// XM_006717059 /// XM_006717060 /// XM_006717061 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction -24.95 64.95 -1.55 0.16 0.23 -4.57
221012_s_at 221012_s_at NM_030912 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030912.1 /DEF=Homo sapiens tripartite motif protein TRIM8 (TRIM8), mRNA. /FEA=mRNA /GEN=TRIM8 /PROD=tripartite motif protein TRIM8 /DB_XREF=gi:13569865 /FL=gb:NM_030912.1 NM_030912 tripartite motif containing 8 TRIM8 81603 NM_030912 /// XM_006717988 /// XM_006717989 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045087 // innate immune response // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 1902187 // negative regulation of viral release from host cell // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0016874 // ligase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 28.00 146.25 1.55 0.16 0.23 -4.57
200095_x_at 200095_x_at AA320764 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA320764 /FEA=EST /DB_XREF=gi:1973113 /DB_XREF=est:EST23183 /UG=Hs.76230 ribosomal protein S10 AA320764 ribosomal protein S10 RPS10 6204 NM_001014 /// NM_001203245 /// NM_001204091 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015961 // diadenosine polyphosphate catabolic process // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from electronic annotation /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation -299.20 4609.18 -1.55 0.16 0.23 -4.57
217963_s_at 217963_s_at NM_014380 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014380.1 /DEF=Homo sapiens p75NTR-associated cell death executor; ovarian granulosa cell protein (13kD) (DXS6984E), mRNA. /FEA=mRNA /GEN=DXS6984E /PROD=p75NTR-associated cell death executor; ovariangranulosa cell protein (13kD) /DB_XREF=gi:7657043 /UG=Hs.17775 p75NTR-associated cell death executor; ovarian granulosa cell protein (13kD) /FL=gb:NM_014380.1 gb:AF187064.1 NM_014380 nerve growth factor receptor (TNFRSF16) associated protein 1 NGFRAP1 27018 NM_001282674 /// NM_014380 /// NM_206915 /// NM_206917 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005123 // death receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 155.60 2062.00 1.55 0.16 0.23 -4.57
202538_s_at 202538_s_at NM_014043 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014043.1 /DEF=Homo sapiens DKFZP564O123 protein (DKFZP564O123), mRNA. /FEA=mRNA /GEN=DKFZP564O123 /PROD=DKFZP564O123 protein /DB_XREF=gi:7661633 /UG=Hs.11449 DKFZP564O123 protein /FL=gb:AF151842.1 gb:AL080122.1 gb:NM_014043.1 NM_014043 charged multivesicular body protein 2B CHMP2B 25978 NM_001244644 /// NM_014043 0006810 // transport // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction 25.28 147.14 1.55 0.16 0.23 -4.57
200916_at 200916_at NM_003564 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003564.1 /DEF=Homo sapiens transgelin 2 (TAGLN2), mRNA. /FEA=mRNA /GEN=TAGLN2 /PROD=transgelin 2 /DB_XREF=gi:4507356 /UG=Hs.75725 transgelin 2 /FL=gb:D21261.1 gb:NM_003564.1 NM_003564 transgelin 2 TAGLN2 8407 NM_001277223 /// NM_001277224 /// NM_003564 0007517 // muscle organ development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from direct assay 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -97.05 1371.85 -1.54 0.16 0.23 -4.57
201255_x_at 201255_x_at NM_004639 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004639.1 /DEF=Homo sapiens HLA-B associated transcript-3 (D6S52E), mRNA. /FEA=mRNA /GEN=D6S52E /PROD=HLA-B associated transcript-3 /DB_XREF=gi:4758109 /UG=Hs.274348 HLA-B associated transcript-3 /FL=gb:M33519.1 gb:NM_004639.1 NM_004639 BCL2-associated athanogene 6 BAG6 7917 NM_001098534 /// NM_001199697 /// NM_001199698 /// NM_004639 /// NM_080702 /// NM_080703 /// XM_005249393 /// XM_005249396 /// XM_005272880 /// XM_005272883 /// XM_005275034 /// XM_005275037 /// XM_005275169 /// XM_005275172 /// XM_005275292 /// XM_005275295 /// XM_005275464 /// XM_005275468 /// XM_005275597 /// XM_005275601 /// XM_006715192 /// XM_006715193 /// XM_006715194 /// XM_006715195 /// XM_006715196 /// XM_006715197 /// XM_006715198 /// XM_006715199 /// XM_006715200 /// XM_006715201 /// XM_006715202 /// XM_006715203 /// XM_006725509 /// XM_006725510 /// XM_006725511 /// XM_006725512 /// XM_006725513 /// XM_006725514 /// XM_006725515 /// XM_006725516 /// XM_006725517 /// XM_006725518 /// XM_006725519 /// XM_006725520 /// XM_006725725 /// XM_006725726 /// XM_006725727 /// XM_006725728 /// XM_006725729 /// XM_006725730 /// XM_006725731 /// XM_006725732 /// XM_006725733 /// XM_006725734 /// XM_006725735 /// XM_006725736 /// XM_006725835 /// XM_006725836 /// XM_006725837 /// XM_006725838 /// XM_006725839 /// XM_006725840 /// XM_006725841 /// XM_006725842 /// XM_006725843 /// XM_006725844 /// XM_006725845 /// XM_006725846 /// XM_006725923 /// XM_006725924 /// XM_006725925 /// XM_006725926 /// XM_006725927 /// XM_006725928 /// XM_006725929 /// XM_006725930 /// XM_006725931 /// XM_006725932 /// XM_006725933 /// XM_006725934 /// XM_006726025 /// XM_006726026 /// XM_006726027 /// XM_006726028 /// XM_006726029 /// XM_006726030 /// XM_006726031 /// XM_006726032 /// XM_006726033 /// XM_006726034 /// XM_006726035 /// XM_006726036 /// XM_006726113 /// XM_006726114 /// XM_006726115 /// XM_006726116 /// XM_006726117 /// XM_006726118 /// XM_006726119 /// XM_006726120 /// XM_006726121 /// XM_006726122 /// XM_006726123 /// XM_006726124 0001822 // kidney development // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018393 // internal peptidyl-lysine acetylation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from mutant phenotype /// 0045861 // negative regulation of proteolysis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0071816 // tail-anchored membrane protein insertion into ER membrane // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0071818 // BAT3 complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity /// 0043022 // ribosome binding // inferred from direct assay /// 0070628 // proteasome binding // inferred from sequence or structural similarity -51.85 303.38 -1.54 0.16 0.23 -4.57
200626_s_at 200626_s_at NM_018834 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018834.1 /DEF=Homo sapiens matrin 3 (MATR3), mRNA. /FEA=mRNA /GEN=MATR3 /PROD=matrin 3 /DB_XREF=gi:10047081 /UG=Hs.78825 matrin 3 /FL=gb:NM_018834.1 gb:AB018266.1 NM_018834 matrin 3 /// small nucleolar RNA host gene 4 (non-protein coding) MATR3 /// SNHG4 9782 /// 724102 NM_001194954 /// NM_001194955 /// NM_001194956 /// NM_001282278 /// NM_018834 /// NM_199189 /// NR_003141 /// NR_036536 0005634 // nucleus // inferred from direct assay /// 0005637 // nuclear inner membrane // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 102.37 512.44 1.54 0.16 0.23 -4.57
210896_s_at 210896_s_at AF306765 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF306765.1 /DEF=Homo sapiens junctate mRNA, complete cds. /FEA=mRNA /PROD=junctate /DB_XREF=gi:11991236 /UG=Hs.283664 aspartate beta-hydroxylase /FL=gb:AF306765.1 AF306765 aspartate beta-hydroxylase ASPH 444 NM_001164750 /// NM_001164751 /// NM_001164752 /// NM_001164753 /// NM_001164754 /// NM_001164755 /// NM_001164756 /// NM_004318 /// NM_020164 /// NM_032466 /// NM_032467 /// NM_032468 /// XM_005251235 /// XM_005251236 /// XM_005251238 /// XM_005251239 /// XM_005251240 /// XM_005251241 /// XM_005251242 /// XM_005251243 /// XM_005251244 /// XM_005251246 /// XM_005251247 /// XM_005251248 /// XM_005251249 /// XM_005251250 /// XM_006716448 /// XM_006716449 0005513 // detection of calcium ion // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007389 // pattern specification process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from direct assay /// 0010649 // regulation of cell communication by electrical coupling // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // traceable author statement /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred from sequence or structural similarity /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // traceable author statement /// 0018193 // peptidyl-amino acid modification // inferred from electronic annotation /// 0031585 // regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from direct assay /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0032237 // activation of store-operated calcium channel activity // inferred from direct assay /// 0033198 // response to ATP // inferred from direct assay /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0042264 // peptidyl-aspartic acid hydroxylation // inferred from electronic annotation /// 0045862 // positive regulation of proteolysis // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // inferred from direct assay /// 0071277 // cellular response to calcium ion // inferred from direct assay /// 0090316 // positive regulation of intracellular protein transport // inferred from direct assay /// 0097202 // activation of cysteine-type endopeptidase activity // inferred from direct assay /// 1901879 // regulation of protein depolymerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0014701 // junctional sarcoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0032541 // cortical endoplasmic reticulum // inferred from direct assay /// 0033017 // sarcoplasmic reticulum membrane // traceable author statement /// 0033018 // sarcoplasmic reticulum lumen // traceable author statement /// 0034704 // calcium channel complex // traceable author statement 0004597 // peptide-aspartate beta-dioxygenase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0044325 // ion channel binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 27.40 145.30 1.54 0.16 0.23 -4.57
200697_at 200697_at NM_000188 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000188.1 /DEF=Homo sapiens hexokinase 1 (HK1), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=HK1 /PROD=hexokinase 1 /DB_XREF=gi:4504390 /UG=Hs.118625 hexokinase 1 /FL=gb:M75126.1 gb:NM_000188.1 NM_000188 hexokinase 1 HK1 3098 NM_000188 /// NM_033496 /// NM_033497 /// NM_033498 /// NM_033500 /// XM_005269735 /// XM_005269736 /// XM_005269737 0001678 // cellular glucose homeostasis // not recorded /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006096 // glycolytic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008645 // hexose transport // traceable author statement /// 0015758 // glucose transport // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019318 // hexose metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046835 // carbohydrate phosphorylation // not recorded /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // traceable author statement /// 0051156 // glucose 6-phosphate metabolic process // not recorded /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004340 // glucokinase activity // not recorded /// 0004396 // hexokinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008865 // fructokinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019158 // mannokinase activity // not recorded -80.28 604.34 -1.54 0.16 0.23 -4.57
209370_s_at 209370_s_at BE502377 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE502377 /FEA=EST /DB_XREF=gi:9704785 /DB_XREF=est:hy22g03.x1 /CLONE=IMAGE:3198100 /UG=Hs.167679 SH3-domain binding protein 2 /FL=gb:AB000462.1 gb:AF000936.1 BE502377 SH3-domain binding protein 2 SH3BP2 6452 NM_001122681 /// NM_001145855 /// NM_001145856 /// NM_003023 /// XM_005247997 /// XM_005247998 /// XM_005247999 /// XM_005248000 /// XM_006713911 /// XM_006713912 /// XM_006713913 0007165 // signal transduction // traceable author statement /// 0009967 // positive regulation of signal transduction // traceable author statement 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 27.40 68.78 1.54 0.16 0.23 -4.57
37408_at 37408_at AB014609 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB014609:Homo sapiens mRNA for KIAA0709 protein, complete cds /cds=(116,4555) /gb=AB014609 /gi=3327231 /ug=Hs.7835 /len=5641 AB014609 mannose receptor, C type 2 MRC2 9902 NM_006039 0001649 // osteoblast differentiation // inferred from direct assay /// 0006897 // endocytosis // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from direct assay 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0030246 // carbohydrate binding // inferred from electronic annotation -32.15 155.05 -1.54 0.16 0.23 -4.57
200982_s_at 200982_s_at NM_001155 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001155.2 /DEF=Homo sapiens annexin A6 (ANXA6), transcript variant 1, mRNA. /FEA=mRNA /GEN=ANXA6 /PROD=annexin VI isoform 1 /DB_XREF=gi:4809274 /UG=Hs.118796 annexin A6 /FL=gb:J03578.1 gb:D00510.1 gb:NM_001155.2 NM_001155 annexin A6 ANXA6 309 NM_001155 /// NM_001193544 /// NM_004033 /// XM_005268432 0006816 // calcium ion transport // inferred from electronic annotation /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0034220 // ion transmembrane transport // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031902 // late endosome membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from mutant phenotype /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0008289 // lipid binding // inferred from mutant phenotype /// 0015276 // ligand-gated ion channel activity // inferred from mutant phenotype /// 0015485 // cholesterol binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 116.05 485.55 1.54 0.17 0.23 -4.57
207801_s_at 207801_s_at NM_014868 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014868.1 /DEF=Homo sapiens ring finger protein 10 (RNF10), mRNA. /FEA=mRNA /GEN=RNF10 /PROD=ring finger protein 10 /DB_XREF=gi:7662652 /UG=Hs.5094 ring finger protein 10 /FL=gb:D87451.1 gb:NM_014868.1 NM_014868 ring finger protein 10 RNF10 9921 NM_014868 /// XM_005254013 /// XM_005254014 /// XM_006719717 /// XR_243026 /// XR_243027 /// XR_429123 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0010626 // negative regulation of Schwann cell proliferation // inferred from sequence or structural similarity /// 0031643 // positive regulation of myelination // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0051865 // protein autoubiquitination // inferred from direct assay 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 32.72 206.74 1.54 0.17 0.23 -4.57
214150_x_at 214150_x_at BE043477 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE043477 /FEA=EST /DB_XREF=gi:8360530 /DB_XREF=est:hk39a01.y1 /CLONE=IMAGE:2999016 /UG=Hs.24322 ATPase, H+ transporting, lysosomal (vacuolar proton pump) 9kD BE043477 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 ATP6V0E1 8992 NM_003945 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0007035 // vacuolar acidification // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0016049 // cell growth // inferred from genetic interaction /// 0033572 // transferrin transport // traceable author statement /// 0043200 // response to amino acid // inferred from electronic annotation /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042625 // ATPase activity, coupled to transmembrane movement of ions // inferred from sequence or structural similarity /// 0046961 // proton-transporting ATPase activity, rotational mechanism // traceable author statement 55.85 719.10 1.54 0.17 0.23 -4.57
217140_s_at 217140_s_at AJ002428 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ002428 /DEF=Homo sapiens VDAC1 pseudogene /FEA=CDS /DB_XREF=gi:3183956 /UG=Hs.201553 voltage-dependent anion channel 1 pseudogene AJ002428 voltage-dependent anion channel 1 VDAC1 7416 NM_003374 /// NR_036624 /// NR_036625 /// XM_005272075 0001662 // behavioral fear response // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007270 // neuron-neuron synaptic transmission // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0046930 // pore complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008308 // voltage-gated anion channel activity // inferred from sequence or structural similarity /// 0008308 // voltage-gated anion channel activity // traceable author statement /// 0015288 // porin activity // inferred from electronic annotation -108.73 467.84 -1.54 0.17 0.23 -4.57
208627_s_at 208627_s_at BE966374 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE966374 /FEA=EST /DB_XREF=gi:11771720 /DB_XREF=est:601660422R1 /CLONE=IMAGE:3906197 /UG=Hs.74497 nuclease sensitive element binding protein 1 /FL=gb:BC002411.1 BE966374 Y box binding protein 1 YBX1 4904 NM_004559 /// XM_005270904 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement /// 0051154 // negative regulation of striated muscle cell differentiation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -258.92 1672.19 -1.54 0.17 0.23 -4.57
214355_x_at 214355_x_at AW274747 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW274747 /FEA=EST /DB_XREF=gi:6661777 /DB_XREF=est:xn34e08.x1 /CLONE=IMAGE:2695622 /UG=Hs.270527 Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327) AW274747 CTAGE family, member 15 /// CTAGE family, member 4 /// CTAGE family, member 8 /// CTAGE family, member 9 CTAGE15 /// CTAGE4 /// CTAGE8 /// CTAGE9 441294 /// 643854 /// 100128553 /// 100142659 NM_001008747 /// NM_001145659 /// NM_001278507 /// NM_198495 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation -27.40 87.97 -1.54 0.17 0.23 -4.57
208971_at 208971_at M14016 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M14016.1 /DEF=Human uroporphyrinogen decarboxylase mRNA, complete cds. /FEA=mRNA /GEN=UROD /DB_XREF=gi:340180 /UG=Hs.78601 uroporphyrinogen decarboxylase /FL=gb:BC001778.1 gb:M14016.1 gb:AF104421.1 gb:AF104422.1 gb:AF104423.1 gb:AF104424.1 gb:AF104425.1 gb:AF104426.1 gb:AF104427.1 gb:AF104428.1 gb:AF104429.1 gb:AF104430.1 gb:AF104431.1 gb:AF104432.1 gb:AF104433.1 gb:AF104434.1 gb:AF104435.1 gb:AF104436.1 gb:AF104437.1 gb:AF104438.1 gb:AF104439.1 gb:AF104440.1 gb:NM_000374.2 M14016 uroporphyrinogen decarboxylase UROD 7389 NM_000374 /// NR_036510 /// XM_005271169 /// XM_005271170 0006778 // porphyrin-containing compound metabolic process // traceable author statement /// 0006779 // porphyrin-containing compound biosynthetic process // inferred from electronic annotation /// 0006782 // protoporphyrinogen IX biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred by curator /// 0006783 // heme biosynthetic process // traceable author statement /// 0042168 // heme metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0004853 // uroporphyrinogen decarboxylase activity // inferred from direct assay /// 0004853 // uroporphyrinogen decarboxylase activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 23.60 172.57 1.54 0.17 0.23 -4.57
564_at 564_at M69013 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank M69013 /FEATURE= /DEFINITION=HUMGTPBRPA Human guanine nucleotide-binding regulatory protein (G-y-alpha) mRNA, complete cds M69013 guanine nucleotide binding protein (G protein), alpha 11 (Gq class) GNA11 2767 NM_002067 0001501 // skeletal system development // inferred from electronic annotation /// 0001508 // action potential // not recorded /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007188 // adenylate cyclase-modulating G-protein coupled receptor signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0045634 // regulation of melanocyte differentiation // inferred from electronic annotation /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0060158 // phospholipase C-activating dopamine receptor signaling pathway // not recorded 0005737 // cytoplasm // traceable author statement /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001664 // G-protein coupled receptor binding // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031826 // type 2A serotonin receptor binding // /// 0046872 // metal ion binding // inferred from electronic annotation 29.17 188.86 1.54 0.17 0.23 -4.57
207719_x_at 207719_x_at NM_014812 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014812.1 /DEF=Homo sapiens KIAA0470 gene product (KIAA0470), mRNA. /FEA=mRNA /GEN=KIAA0470 /PROD=KARP-1-binding protein /DB_XREF=gi:7662141 /UG=Hs.25132 KIAA0470 gene product /FL=gb:AB022657.1 gb:NM_014812.1 NM_014812 centrosomal protein 170kDa /// centrosomal protein 170kDa pseudogene 1 CEP170 /// CEP170P1 9859 /// 645455 NM_001042404 /// NM_001042405 /// NM_014812 /// NM_153243 /// NR_003135 /// XM_005273361 /// XM_006711843 /// XM_006711844 /// XM_006711845 /// XM_006711846 /// XM_006711847 /// XM_006711848 /// XM_006711849 /// XM_006711850 /// XM_006711851 /// XM_006711852 /// XM_006724974 /// XM_006724975 /// XM_006724976 /// XM_006724977 /// XM_006724978 /// XM_006724979 /// XM_006724980 /// XM_006724981 /// XM_006724982 /// XM_006724983 /// XM_006724984 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005814 // centriole // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 71.23 527.29 1.53 0.17 0.23 -4.57
632_at 632_at L40027 Homo sapiens Oct 6, 2014 Exemplar sequence Affymetrix Proprietary Database L40027 /FEATURE=mRNA /DEFINITION=HUMGLYSYN Homo sapiens glycogen synthase kinase 3 mRNA, complete cds L40027 glycogen synthase kinase 3 alpha GSK3A 2931 NM_019884 0003073 // regulation of systemic arterial blood pressure // inferred from sequence or structural similarity /// 0003214 // cardiac left ventricle morphogenesis // inferred from sequence or structural similarity /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0010905 // negative regulation of UDP-glucose catabolic process // inferred by curator /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032007 // negative regulation of TOR signaling // inferred from sequence or structural similarity /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0036016 // cellular response to interleukin-3 // inferred from sequence or structural similarity /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045719 // negative regulation of glycogen biosynthetic process // traceable author statement /// 0045732 // positive regulation of protein catabolic process // non-traceable author statement /// 0045823 // positive regulation of heart contraction // inferred from sequence or structural similarity /// 0046325 // negative regulation of glucose import // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0051348 // negative regulation of transferase activity // inferred from mutant phenotype /// 0061052 // negative regulation of cell growth involved in cardiac muscle cell development // inferred from sequence or structural similarity /// 0071879 // positive regulation of adrenergic receptor signaling pathway // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // traceable author statement /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from sequence or structural similarity /// 1901030 // positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway // inferred from sequence or structural similarity /// 2000077 // negative regulation of type B pancreatic cell development // traceable author statement /// 2000466 // negative regulation of glycogen (starch) synthase activity // traceable author statement /// 2000467 // positive regulation of glycogen (starch) synthase activity // inferred from sequence or structural similarity 0005829 // cytosol // traceable author statement /// 0030877 // beta-catenin destruction complex // non-traceable author statement /// 0030877 // beta-catenin destruction complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction /// 0050321 // tau-protein kinase activity // traceable author statement 24.65 156.12 1.53 0.17 0.23 -4.57
208629_s_at 208629_s_at BG472176 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG472176 /FEA=EST /DB_XREF=gi:13404550 /DB_XREF=est:602513910F1 /CLONE=IMAGE:4645587 /UG=Hs.75860 hydroxyacyl-Coenzyme A dehydrogenase3-ketoacyl-Coenzyme A thiolaseenoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit /FL=gb:NM_000182.1 gb:D16480.1 gb:U04627.1 BG472176 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit HADHA 3030 NM_000182 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006644 // phospholipid metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0035965 // cardiolipin acyl-chain remodeling // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016507 // mitochondrial fatty acid beta-oxidation multienzyme complex // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // traceable author statement /// 0003985 // acetyl-CoA C-acetyltransferase activity // traceable author statement /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from electronic annotation /// 0004300 // enoyl-CoA hydratase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016508 // long-chain-enoyl-CoA hydratase activity // inferred from electronic annotation /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation -31.78 271.99 -1.53 0.17 0.23 -4.57
200596_s_at 200596_s_at BE614908 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE614908 /FEA=EST /DB_XREF=gi:9896507 /DB_XREF=est:601280348F1 /CLONE=IMAGE:3622499 /UG=Hs.198899 eukaryotic translation initiation factor 3, subunit 10 (theta, 150170kD) /FL=gb:D50929.1 gb:U58046.1 gb:U78311.1 gb:NM_003750.1 BE614908 eukaryotic translation initiation factor 3, subunit A EIF3A 8661 NM_003750 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0001732 // formation of translation initiation complex // inferred from direct assay /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005198 // structural molecule activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -40.50 230.23 -1.53 0.17 0.23 -4.57
201784_s_at 201784_s_at NM_014267 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014267.1 /DEF=Homo sapiens small acidic protein (IMAGE145052), mRNA. /FEA=mRNA /GEN=IMAGE145052 /PROD=small acidic protein /DB_XREF=gi:7657233 /UG=Hs.78050 small acidic protein /FL=gb:U51678.1 gb:NM_014267.1 NM_014267 chromosome 11 open reading frame 58 C11orf58 10944 NM_001142705 /// NM_014267 114.65 693.92 1.53 0.17 0.23 -4.57
207391_s_at 207391_s_at NM_003557 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003557.1 /DEF=Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I, alpha (PIP5K1A), mRNA. /FEA=mRNA /GEN=PIP5K1A /PROD=phosphatidylinositol-4-phosphate 5-kinase, typeI, alpha /DB_XREF=gi:4505814 /UG=Hs.149255 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha /FL=gb:U78575.1 gb:NM_003557.1 NM_003557 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha PIP5K1A 8394 NM_001135636 /// NM_001135637 /// NM_001135638 /// NM_003557 /// XM_005245525 /// XM_005245526 /// XM_005245527 /// XM_005245528 /// XM_005245529 /// XM_005245530 /// XM_005245531 /// XM_005245532 /// XM_006711563 /// XM_006711564 /// XM_006711565 /// XM_006711566 /// XM_006711567 /// XM_006711568 0006644 // phospholipid metabolic process // traceable author statement /// 0006650 // glycerophospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0006909 // phagocytosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from direct assay /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // non-traceable author statement /// 0016477 // cell migration // non-traceable author statement /// 0030216 // keratinocyte differentiation // traceable author statement /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0032863 // activation of Rac GTPase activity // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation /// 0046854 // phosphatidylinositol phosphorylation // inferred from direct assay /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0046854 // phosphatidylinositol phosphorylation // traceable author statement /// 0048041 // focal adhesion assembly // inferred from mutant phenotype /// 0060326 // cell chemotaxis // inferred from mutant phenotype /// 0072661 // protein targeting to plasma membrane // inferred from mutant phenotype /// 0097178 // ruffle assembly // inferred from mutant phenotype 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0016607 // nuclear speck // traceable author statement /// 0030027 // lamellipodium // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // inferred from direct assay /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from direct assay -61.47 204.26 -1.53 0.17 0.23 -4.57
201989_s_at 201989_s_at AL529409 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL529409 /FEA=EST /DB_XREF=gi:12792902 /DB_XREF=est:AL529409 /CLONE=CS0DD006YM17 (3 prime) /UG=Hs.13313 cAMP responsive element binding protein-like 2 /FL=gb:AF039081.1 gb:NM_001310.1 AL529409 cAMP responsive element binding protein-like 2 CREBL2 1389 NM_001310 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0045600 // positive regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0046326 // positive regulation of glucose import // inferred from sequence or structural similarity /// 0046889 // positive regulation of lipid biosynthetic process // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 35.12 159.76 1.53 0.17 0.23 -4.57
220760_x_at 220760_x_at NM_024733 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024733.1 /DEF=Homo sapiens hypothetical protein FLJ14345 (FLJ14345), mRNA. /FEA=mRNA /GEN=FLJ14345 /PROD=hypothetical protein FLJ14345 /DB_XREF=gi:13376051 /UG=Hs.117270 hypothetical protein FLJ14345 /FL=gb:NM_024733.1 NM_024733 zinc finger protein 665 ZNF665 79788 NM_024733 /// XM_005259266 /// XM_006723387 /// XM_006723388 /// XM_006723389 /// XM_006723390 /// XM_006723391 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // not recorded 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation -23.97 129.21 -1.53 0.17 0.23 -4.57
201841_s_at 201841_s_at NM_001540 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001540.2 /DEF=Homo sapiens heat shock 27kD protein 1 (HSPB1), mRNA. /FEA=mRNA /GEN=HSPB1 /PROD=heat shock 27kD protein 1 /DB_XREF=gi:4996892 /UG=Hs.76067 heat shock 27kD protein 1 /FL=gb:AB020027.1 gb:BC000510.1 gb:U90906.1 gb:NM_001540.2 NM_001540 heat shock 27kDa protein 1 HSPB1 3315 NM_001540 0001895 // retina homeostasis // inferred from expression pattern /// 0006446 // regulation of translational initiation // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0006928 // cellular component movement // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0009615 // response to virus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0032731 // positive regulation of interleukin-1 beta production // inferred from sequence or structural similarity /// 0035556 // intracellular signal transduction // inferred from mutant phenotype /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from mutant phenotype /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043122 // regulation of I-kappaB kinase/NF-kappaB signaling // inferred from sequence or structural similarity /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0071901 // negative regulation of protein serine/threonine kinase activity // inferred from electronic annotation /// 0071901 // negative regulation of protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from sequence or structural similarity /// 2001028 // positive regulation of endothelial cell chemotaxis // inferred from mutant phenotype /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0000502 // proteasome complex // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008426 // protein kinase C inhibitor activity // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay 156.90 1622.15 1.53 0.17 0.23 -4.57
212086_x_at 212086_x_at AK026584 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026584.1 /DEF=Homo sapiens cDNA: FLJ22931 fis, clone KAT07501, highly similar to HSLAMAR Human mRNA for nuclear envelope protein lamin A precursor. /FEA=mRNA /DB_XREF=gi:10439468 /UG=Hs.77886 lamin AC AK026584 lamin A/C LMNA 4000 NM_001257374 /// NM_001282624 /// NM_001282625 /// NM_001282626 /// NM_005572 /// NM_170707 /// NM_170708 0000278 // mitotic cell cycle // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0006997 // nucleus organization // inferred from electronic annotation /// 0006998 // nuclear envelope organization // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0007517 // muscle organ development // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from sequence or structural similarity /// 0030951 // establishment or maintenance of microtubule cytoskeleton polarity // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0034504 // protein localization to nucleus // inferred from sequence or structural similarity /// 0035105 // sterol regulatory element binding protein import into nucleus // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from electronic annotation /// 0090343 // positive regulation of cell aging // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005638 // lamin filament // inferred from electronic annotation /// 0005638 // lamin filament // traceable author statement /// 0005652 // nuclear lamina // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005882 // intermediate filament // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 71.73 258.01 1.53 0.17 0.23 -4.57
220099_s_at 220099_s_at NM_016007 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016007.1 /DEF=Homo sapiens CGI-59 protein (LOC51625), mRNA. /FEA=mRNA /GEN=LOC51625 /PROD=CGI-59 protein /DB_XREF=gi:7706297 /UG=Hs.279867 CGI-59 protein /FL=gb:AF151817.1 gb:NM_016007.1 NM_016007 C7orf55-LUC7L2 readthrough /// LUC7-like 2 (S. cerevisiae) C7orf55-LUC7L2 /// LUC7L2 51631 /// 100996928 NM_001244584 /// NM_001244585 /// NM_001270643 /// NM_016019 0006376 // mRNA splice site selection // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005685 // U1 snRNP // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 25.60 219.72 1.53 0.17 0.23 -4.57
217225_x_at 217225_x_at AL512687 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL512687.1 /DEF=Homo sapiens mRNA; cDNA DKFZp547A1913 (from clone DKFZp547A1913). /FEA=mRNA /GEN=DKFZp547A1913 /PROD=hypothetical protein /DB_XREF=gi:12224839 /UG=Hs.227823 pM5 protein AL512687 uncharacterized LOC101060373 /// NODAL modulator 1 /// NODAL modulator 2 /// NODAL modulator 3 LOC101060373 /// NOMO1 /// NOMO2 /// NOMO3 23420 /// 283820 /// 408050 /// 101060373 NM_001004060 /// NM_001004067 /// NM_014287 /// NM_173614 /// XM_005255318 /// XM_006725195 /// XR_253508 /// XR_430727 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation -216.70 1100.03 -1.53 0.17 0.23 -4.57
210904_s_at 210904_s_at U81380 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U81380.2 /DEF=Human interleukin-13 receptor soluble form mRNA, complete cds. /FEA=mRNA /PROD=interleukin-13 receptor soluble form /DB_XREF=gi:5174767 /UG=Hs.285115 interleukin 13 receptor, alpha 1 /FL=gb:U81380.2 U81380 interleukin 13 receptor, alpha 1 IL13RA1 3597 NM_001560 /// XM_005262411 0002639 // positive regulation of immunoglobulin production // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0035772 // interleukin-13-mediated signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005898 // interleukin-13 receptor complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016515 // interleukin-13 receptor activity // inferred from electronic annotation -29.43 127.01 -1.53 0.17 0.23 -4.57
201014_s_at 201014_s_at NM_006452 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006452.1 /DEF=Homo sapiens multifunctional polypeptide similar to SAICAR synthetase and AIR carboxylase (ADE2H1), mRNA. /FEA=mRNA /GEN=ADE2H1 /PROD=multifunctional polypeptide similar to SAICARsynthetase and AIR carboxylase /DB_XREF=gi:5453538 /UG=Hs.117950 multifunctional polypeptide similar to SAICAR synthetase and AIR carboxylase /FL=gb:NM_006452.1 NM_006452 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase PAICS 10606 NM_001079524 /// NM_001079525 /// NM_006452 /// XM_006714035 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009113 // purine nucleobase biosynthetic process // traceable author statement /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004638 // phosphoribosylaminoimidazole carboxylase activity // traceable author statement /// 0004639 // phosphoribosylaminoimidazolesuccinocarboxamide synthase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0034023 // 5-(carboxyamino)imidazole ribonucleotide mutase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 40.68 262.21 1.53 0.17 0.23 -4.57
201260_s_at 201260_s_at NM_006754 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006754.1 /DEF=Homo sapiens synaptophysin-like protein (SYPL), mRNA. /FEA=mRNA /GEN=SYPL /PROD=synaptophysin-like protein /DB_XREF=gi:5803184 /UG=Hs.80919 synaptophysin-like protein /FL=gb:NM_006754.1 NM_006754 synaptophysin-like 1 SYPL1 6856 NM_006754 /// NM_182715 /// XM_006716099 0006810 // transport // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement 0005887 // integral component of plasma membrane // traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0030141 // secretory granule // inferred from electronic annotation /// 0030285 // integral component of synaptic vesicle membrane // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation 48.47 227.84 1.53 0.17 0.23 -4.57
221381_s_at 221381_s_at NM_006792 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006792.2 /DEF=Homo sapiens mortality factor 4 (MORF4), mRNA. /FEA=CDS /GEN=MORF4 /PROD=mortality factor 4 /DB_XREF=gi:6996927 /UG=Hs.251396 mortality factor 4 /FL=gb:NM_006792.2 NM_006792 mortality factor 4 like 1 MORF4L1 10933 NM_001265603 /// NM_001265604 /// NM_001265605 /// NM_006791 /// NM_206839 0000724 // double-strand break repair via homologous recombination // inferred from direct assay /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from direct assay /// 0043968 // histone H2A acetylation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0016580 // Sin3 complex // inferred from direct assay /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction 39.80 304.23 1.52 0.17 0.24 -4.57
213807_x_at 213807_x_at BE870509 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE870509 /FEA=EST /DB_XREF=gi:10319285 /DB_XREF=est:601447096F1 /CLONE=IMAGE:3851374 /UG=Hs.285754 met proto-oncogene (hepatocyte growth factor receptor) BE870509 MET proto-oncogene, receptor tyrosine kinase MET 4233 NM_000245 /// NM_001127500 /// XM_006715988 /// XM_006715989 /// XM_006715990 /// XM_006715991 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001890 // placenta development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // non-traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010828 // positive regulation of glucose transport // inferred from electronic annotation /// 0014812 // muscle cell migration // inferred from electronic annotation /// 0014902 // myotube differentiation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // non-traceable author statement /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0030534 // adult behavior // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048012 // hepatocyte growth factor receptor signaling pathway // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from mutant phenotype /// 0050918 // positive chemotaxis // inferred from direct assay /// 0051450 // myoblast proliferation // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0071526 // semaphorin-plexin signaling pathway // inferred from direct assay /// 1901299 // negative regulation of hydrogen peroxide-mediated programmed cell death // inferred from mutant phenotype /// 2001028 // positive regulation of endothelial cell chemotaxis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // non-traceable author statement /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005008 // hepatocyte growth factor-activated receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction -24.55 104.47 -1.52 0.17 0.24 -4.57
213504_at 213504_at W63732 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W63732 /FEA=EST /DB_XREF=gi:1371312 /DB_XREF=est:zd30b06.s1 /CLONE=IMAGE:342131 /UG=Hs.15591 COP9 subunit 6 (MOV34 homolog, 34 kD) W63732 COP9 signalosome subunit 6 COPS6 10980 NM_006833 0010388 // cullin deneddylation // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // COP9 signalosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 39.78 183.69 1.52 0.17 0.24 -4.57
208924_at 208924_at AB024703 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB024703.1 /DEF=Homo sapiens mRNA for Sid1669p, complete cds. /FEA=mRNA /GEN=Sid1669 /PROD=Sid1669p /DB_XREF=gi:5931544 /UG=Hs.96334 ring finger protein 11 /FL=gb:AF151881.1 gb:AB024703.1 gb:NM_014372.1 AB024703 ring finger protein 11 RNF11 26994 NM_014372 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -61.22 491.56 -1.52 0.17 0.24 -4.57
200631_s_at 200631_s_at NM_003011 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003011.1 /DEF=Homo sapiens SET translocation (myeloid leukemia-associated) (SET), mRNA. /FEA=mRNA /GEN=SET /PROD=SET translocation (myeloid leukemia-associated) /DB_XREF=gi:4506890 /UG=Hs.145279 SET translocation (myeloid leukemia-associated) /FL=gb:U51924.1 gb:M93651.1 gb:NM_003011.1 NM_003011 SET nuclear proto-oncogene /// SET-like protein SET /// SETSIP 6418 /// 646817 NM_001122821 /// NM_001248000 /// NM_001248001 /// NM_001287737 /// NM_003011 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006337 // nucleosome disassembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035067 // negative regulation of histone acetylation // traceable author statement /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0045446 // endothelial cell differentiation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0004864 // protein phosphatase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0042393 // histone binding // traceable author statement 58.82 729.51 1.51 0.17 0.24 -4.57
216849_at 216849_at AL080233 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080233.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586L111 (from clone DKFZp586L111). /FEA=mRNA /DB_XREF=gi:5262726 /UG=Hs.326580 Homo sapiens mRNA; cDNA DKFZp586L111 (from clone DKFZp586L111) AL080233 AC007389.3 -25.68 48.61 -1.51 0.17 0.24 -4.57
207828_s_at 207828_s_at NM_005196 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005196.1 /DEF=Homo sapiens centromere protein F (350400kD, mitosin) (CENPF), mRNA. /FEA=mRNA /GEN=CENPF /PROD=centromere protein F (350400kD, mitosin) /DB_XREF=gi:4885132 /UG=Hs.77204 centromere protein F (350400kD, mitosin) /FL=gb:NM_005196.1 gb:U19769.1 NM_005196 centromere protein F, 350/400kDa CENPF 1063 NM_016343 0000085 // mitotic G2 phase // inferred from mutant phenotype /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000087 // mitotic M phase // inferred from direct assay /// 0000087 // mitotic M phase // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0007059 // chromosome segregation // non-traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0015031 // protein transport // inferred from direct assay /// 0015031 // protein transport // inferred from mutant phenotype /// 0016202 // regulation of striated muscle tissue development // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // non-traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051310 // metaphase plate congression // inferred from direct assay /// 0051382 // kinetochore assembly // non-traceable author statement /// 0051726 // regulation of cell cycle // traceable author statement 0000775 // chromosome, centromeric region // inferred from direct assay /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000785 // chromatin // non-traceable author statement /// 0000922 // spindle pole // inferred from direct assay /// 0000940 // condensed chromosome outer kinetochore // inferred from direct assay /// 0000940 // condensed chromosome outer kinetochore // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0045120 // pronucleus // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0045502 // dynein binding // inferred from direct assay -36.40 182.30 -1.51 0.17 0.24 -4.57
200057_s_at 200057_s_at NM_007363 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007363.2 /DEF=Homo sapiens non-POU-domain-containing, octamer-binding (NONO), mRNA. /FEA=mRNA /GEN=NONO /PROD=non-Pou domain-containing octamer (ATGCAAAT)binding protein /DB_XREF=gi:7657382 /UG=Hs.172207 non-POU-domain-containing, octamer-binding /FL=gb:NM_007363.2 NM_007363 non-POU domain containing, octamer-binding NONO 4841 NM_001145408 /// NM_001145409 /// NM_001145410 /// NM_007363 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0042382 // paraspeckles // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -205.25 1374.42 -1.51 0.17 0.24 -4.57
205196_s_at 205196_s_at NM_001283 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001283.1 /DEF=Homo sapiens adaptor-related protein complex 1, sigma 1 subunit (AP1S1), mRNA. /FEA=mRNA /GEN=AP1S1 /PROD=adaptor-related protein complex 1, sigma 1subunit /DB_XREF=gi:4557470 /UG=Hs.57600 adaptor-related protein complex 1, sigma 1 subunit /FL=gb:AB015319.1 gb:NM_001283.1 NM_001283 adaptor-related protein complex 1, sigma 1 subunit AP1S1 1174 NM_001283 /// NM_057089 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005765 // lysosomal membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030121 // AP-1 adaptor complex // traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // non-traceable author statement /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 35.95 60.58 1.51 0.17 0.24 -4.57
202427_s_at 202427_s_at NM_015415 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015415.1 /DEF=Homo sapiens DKFZP564B167 protein (DKFZP564B167), mRNA. /FEA=mRNA /GEN=DKFZP564B167 /PROD=DKFZP564B167 protein /DB_XREF=gi:7661601 /UG=Hs.76285 DKFZP564B167 protein /FL=gb:AL110297.1 gb:NM_015415.1 NM_015415 mitochondrial pyruvate carrier 2 MPC2 25874 NM_001143674 /// NM_015415 /// NR_026550 /// XM_006711266 0006090 // pyruvate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006850 // mitochondrial pyruvate transport // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1901475 // pyruvate transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0050833 // pyruvate transmembrane transporter activity // inferred from electronic annotation -32.27 260.61 -1.51 0.17 0.24 -4.57
215978_x_at 215978_x_at AK021514 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK021514.1 /DEF=Homo sapiens cDNA FLJ11452 fis, clone HEMBA1001435. /FEA=mRNA /DB_XREF=gi:10432710 /UG=Hs.148598 Homo sapiens cDNA FLJ11452 fis, clone HEMBA1001435 AK021514 zinc finger protein 721 ZNF721 170960 NM_133474 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 35.30 131.10 1.50 0.17 0.24 -4.57
215584_at 215584_at AK022679 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK022679.1 /DEF=Homo sapiens cDNA FLJ12617 fis, clone NT2RM4001662. /FEA=mRNA /DB_XREF=gi:10434213 /UG=Hs.287538 Homo sapiens cDNA FLJ12617 fis, clone NT2RM4001662 AK022679 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 HECW1 23072 NM_001287059 /// NM_015052 /// XM_005249665 /// XM_006715670 /// XM_006715671 /// XM_006715672 /// XM_006715673 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation -24.57 77.66 -1.50 0.17 0.24 -4.57
202432_at 202432_at NM_021132 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021132.1 /DEF=Homo sapiens protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta) (PPP3CB), mRNA. /FEA=mRNA /GEN=PPP3CB /PROD=protein phosphatase 3 (formerly 2B), catalyticsubunit, beta isoform (calcineurin A beta) /DB_XREF=gi:11036639 /UG=Hs.151531 protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta) /FL=gb:NM_021132.1 gb:M29551.1 NM_021132 protein phosphatase 3, catalytic subunit, beta isozyme PPP3CB 5532 NM_001142353 /// NM_001142354 /// NM_001289968 /// NM_001289969 /// NM_021132 /// XM_005269944 /// XM_005269945 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007612 // learning // traceable author statement /// 0007613 // memory // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0014883 // transition between fast and slow fiber // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0017156 // calcium ion-dependent exocytosis // inferred from sequence or structural similarity /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0033173 // calcineurin-NFAT signaling cascade // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0035176 // social behavior // inferred from expression pattern /// 0035690 // cellular response to drug // inferred from direct assay /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042098 // T cell proliferation // non-traceable author statement /// 0042110 // T cell activation // traceable author statement /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // traceable author statement /// 0048675 // axon extension // traceable author statement /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // inferred from sequence or structural similarity /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005955 // calcineurin complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // non-traceable author statement /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // non-traceable author statement /// 0008144 // drug binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0030346 // protein phosphatase 2B binding // inferred from direct assay /// 0033192 // calmodulin-dependent protein phosphatase activity // inferred from sequence or structural similarity /// 0033192 // calmodulin-dependent protein phosphatase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from physical interaction -38.80 215.53 -1.50 0.17 0.24 -4.57
201655_s_at 201655_s_at M85289 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M85289.1 /DEF=Human heparan sulfate proteoglycan (HSPG2) mRNA, complete cds. /FEA=mRNA /GEN=HSPG2 /PROD=heparan sulfate proteoglycan /DB_XREF=gi:184426 /UG=Hs.211573 heparan sulfate proteoglycan 2 (perlecan) /FL=gb:M85289.1 gb:NM_005529.2 M85289 heparan sulfate proteoglycan 2 HSPG2 3339 NM_001291860 /// NM_005529 /// XM_005245863 /// XM_006710594 /// XM_006710595 /// XM_006710596 /// XM_006710597 /// XM_006710598 0001523 // retinoid metabolic process // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -207.02 1740.91 -1.50 0.18 0.24 -4.57
201812_s_at 201812_s_at NM_019059 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019059.1 /DEF=Homo sapiens 6.2 kd protein (LOC54543), mRNA. /FEA=mRNA /GEN=LOC54543 /PROD=6.2 kd protein /DB_XREF=gi:9506858 /UG=Hs.112318 6.2 kd protein /FL=gb:BC001732.1 gb:AF150733.1 gb:NM_019059.1 NM_019059 chromosome 4 open reading frame 46 /// translocase of outer mitochondrial membrane 7 homolog (yeast) C4orf46 /// TOMM7 54543 /// 201725 NM_001008393 /// NM_019059 /// NR_077234 /// NR_077235 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030150 // protein import into mitochondrial matrix // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008320 // protein transmembrane transporter activity // traceable author statement 130.88 1024.59 1.50 0.18 0.24 -4.57
201483_s_at 201483_s_at BC002802 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002802.1 /DEF=Homo sapiens, suppressor of Ty (S.cerevisiae) 4 homolog 1, clone MGC:3864, mRNA, complete cds. /FEA=mRNA /PROD=suppressor of Ty (S.cerevisiae) 4 homolog 1 /DB_XREF=gi:12803910 /UG=Hs.79058 suppressor of Ty (S.cerevisiae) 4 homolog 1 /FL=gb:BC002802.1 gb:U43923.1 gb:U38818.1 gb:U38817.1 gb:NM_003168.1 BC002802 suppressor of Ty 4 homolog 1 (S. cerevisiae) SUPT4H1 6827 NM_003168 /// NR_073470 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006338 // chromatin remodeling // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // inferred from direct assay /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0032785 // negative regulation of DNA-templated transcription, elongation // inferred from direct assay /// 0032786 // positive regulation of DNA-templated transcription, elongation // inferred from direct assay /// 0034244 // negative regulation of transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0032044 // DSIF complex // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction -19.23 171.76 -1.50 0.18 0.24 -4.57
208992_s_at 208992_s_at BC000627 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000627.1 /DEF=Homo sapiens, Signal transducer and activator of transcription 3, clone MGC:1607, mRNA, complete cds. /FEA=mRNA /PROD=Signal transducer and activator of transcription3 /DB_XREF=gi:12653684 /UG=Hs.321677 signal transducer and activator of transcription 3 (acute-phase response factor) /FL=gb:BC000627.1 gb:NM_003150.1 gb:L29277.1 BC000627 signal transducer and activator of transcription 3 (acute-phase response factor) STAT3 6774 NM_003150 /// NM_139276 /// NM_213662 /// XM_005257616 /// XM_005257617 /// XM_005257618 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001659 // temperature homeostasis // inferred from sequence or structural similarity /// 0001754 // eye photoreceptor cell differentiation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006928 // cellular component movement // traceable author statement /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // non-traceable author statement /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0019953 // sexual reproduction // inferred from sequence or structural similarity /// 0030522 // intracellular receptor signaling pathway // inferred from direct assay /// 0032355 // response to estradiol // inferred from direct assay /// 0032870 // cellular response to hormone stimulus // inferred from direct assay /// 0034097 // response to cytokine // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042755 // eating behavior // inferred from sequence or structural similarity /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048708 // astrocyte differentiation // inferred from sequence or structural similarity /// 0060019 // radial glial cell differentiation // inferred from sequence or structural similarity /// 0060396 // growth hormone receptor signaling pathway // inferred from direct assay /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from direct assay /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from sequence or structural similarity /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // traceable author statement /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0070102 // interleukin-6-mediated signaling pathway // inferred from direct assay /// 2001223 // negative regulation of neuron migration // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0031730 // CCR5 chemokine receptor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from sequence or structural similarity 30.33 154.04 1.49 0.18 0.24 -4.57
205292_s_at 205292_s_at NM_002137 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002137.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein A2B1 (HNRPA2B1), mRNA. /FEA=mRNA /GEN=HNRPA2B1 /PROD=heterogeneous nuclear ribonucleoprotein A2B1 /DB_XREF=gi:4504446 /UG=Hs.75598 heterogeneous nuclear ribonucleoprotein A2B1 /FL=gb:NM_002137.1 NM_002137 heterogeneous nuclear ribonucleoprotein A2/B1 HNRNPA2B1 3181 NM_002137 /// NM_031243 /// XM_005249729 /// XM_006715714 /// XR_242076 /// XR_242077 /// XR_428077 /// XR_428078 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from direct assay /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from electronic annotation /// 0050658 // RNA transport // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0043047 // single-stranded telomeric DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0097157 // pre-mRNA intronic binding // inferred from electronic annotation 137.12 1117.74 1.49 0.18 0.25 -4.57
201756_at 201756_at NM_002946 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002946.1 /DEF=Homo sapiens replication protein A2 (32kD) (RPA2), mRNA. /FEA=mRNA /GEN=RPA2 /PROD=replication protein A2 (32kD) /DB_XREF=gi:4506584 /UG=Hs.79411 replication protein A2 (32kD) /FL=gb:BC001630.1 gb:J05249.1 gb:NM_002946.1 NM_002946 replication protein A2, 32kDa RPA2 6118 NM_001286076 /// NM_002946 /// XM_005245965 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0000722 // telomere maintenance via recombination // traceable author statement /// 0000723 // telomere maintenance // inferred from mutant phenotype /// 0000723 // telomere maintenance // traceable author statement /// 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0000724 // double-strand break repair via homologous recombination // traceable author statement /// 0000730 // DNA recombinase assembly // traceable author statement /// 0006260 // DNA replication // inferred from direct assay /// 0006260 // DNA replication // inferred from mutant phenotype /// 0006260 // DNA replication // traceable author statement /// 0006261 // DNA-dependent DNA replication // traceable author statement /// 0006271 // DNA strand elongation involved in DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006284 // base-excision repair // inferred from direct assay /// 0006289 // nucleotide-excision repair // inferred from mutant phenotype /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006297 // nucleotide-excision repair, DNA gap filling // traceable author statement /// 0006298 // mismatch repair // inferred from mutant phenotype /// 0006302 // double-strand break repair // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010569 // regulation of double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0031571 // mitotic G1 DNA damage checkpoint // inferred from mutant phenotype /// 0032201 // telomere maintenance via semi-conservative replication // traceable author statement /// 2000001 // regulation of DNA damage checkpoint // inferred from mutant phenotype 0000781 // chromosome, telomeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005662 // DNA replication factor A complex // inferred from direct assay /// 0005662 // DNA replication factor A complex // inferred from physical interaction /// 0005730 // nucleolus // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0035861 // site of double-strand break // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred by curator /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from electronic annotation 56.40 256.25 1.49 0.18 0.25 -4.57
217774_s_at 217774_s_at NM_016404 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016404.1 /DEF=Homo sapiens hypothetical protein (HSPC152), mRNA. /FEA=mRNA /GEN=HSPC152 /PROD=hypothetical protein /DB_XREF=gi:7705476 /UG=Hs.79259 hypothetical protein /FL=gb:AF110774.1 gb:AF161501.1 gb:NM_016404.1 gb:AF229068.1 NM_016404 tRNA methyltransferase 11-2 homolog (S. cerevisiae) TRMT112 51504 NM_001286082 /// NM_001286084 /// NM_016404 0018364 // peptidyl-glutamine methylation // inferred from direct assay 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008276 // protein methyltransferase activity // inferred from direct assay 36.47 494.69 1.49 0.18 0.25 -4.57
202292_x_at 202292_x_at NM_007260 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007260.1 /DEF=Homo sapiens lysophospholipase II (LYPLA2), mRNA. /FEA=mRNA /GEN=LYPLA2 /PROD=lysophospholipase II /DB_XREF=gi:9966763 /UG=Hs.283655 lysophospholipase II /FL=gb:AF098668.1 gb:NM_007260.1 NM_007260 lysophospholipase II LYPLA2 11313 NM_007260 /// XM_005245728 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016787 // hydrolase activity // inferred from electronic annotation 42.40 363.27 1.49 0.18 0.25 -4.57
207320_x_at 207320_x_at NM_004602 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004602.1 /DEF=Homo sapiens staufen (Drosophila, RNA-binding protein) (STAU), transcript variant T4, mRNA. /FEA=mRNA /GEN=STAU /PROD=staufen, isoform a /DB_XREF=gi:4759175 /UG=Hs.6113 staufen (Drosophila, RNA-binding protein) /FL=gb:AF061941.1 gb:NM_004602.1 NM_004602 staufen double-stranded RNA binding protein 1 STAU1 6780 NM_001037328 /// NM_004602 /// NM_017452 /// NM_017453 /// NM_017454 /// XM_005260524 /// XM_005260525 /// XM_005260526 /// XM_005260527 /// XM_005260528 /// XM_005260529 /// XM_006723865 /// XM_006723866 /// XM_006723867 /// XM_006723868 /// XM_006723869 0008298 // intracellular mRNA localization // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044297 // cell body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008157 // protein phosphatase 1 binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 87.78 707.94 1.49 0.18 0.25 -4.57
201508_at 201508_at NM_001552 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001552.1 /DEF=Homo sapiens insulin-like growth factor-binding protein 4 (IGFBP4), mRNA. /FEA=mRNA /GEN=IGFBP4 /PROD=insulin-like growth factor-binding protein 4 /DB_XREF=gi:10835020 /UG=Hs.1516 insulin-like growth factor-binding protein 4 /FL=gb:NM_001552.1 gb:M62403.1 NM_001552 insulin-like growth factor binding protein 4 IGFBP4 3487 NM_001552 0001501 // skeletal system development // traceable author statement /// 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006259 // DNA metabolic process // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0010906 // regulation of glucose metabolic process // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044342 // type B pancreatic cell proliferation // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation 121.18 664.64 1.49 0.18 0.25 -4.57
200042_at 200042_at NM_014306 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014306.1 /DEF=Homo sapiens hypothetical protein (HSPC117), mRNA. /FEA=mRNA /GEN=HSPC117 /PROD=similar to C. elegens hypothetical 55.2 kDprotein F16A11.2 /DB_XREF=gi:7657014 /UG=Hs.10729 hypothetical protein /FL=gb:BC000151.1 gb:BC002970.1 gb:AF161466.1 gb:NM_014306.1 gb:AF155658.1 NM_014306 RNA 2',3'-cyclic phosphate and 5'-OH ligase RTCB 51493 NM_014306 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001890 // placenta development // inferred from electronic annotation /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from direct assay /// 0006396 // RNA processing // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // non-traceable author statement /// 0008033 // tRNA processing // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0072669 // tRNA-splicing ligase complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003972 // RNA ligase (ATP) activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008452 // RNA ligase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0017166 // vinculin binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 48.02 317.61 1.49 0.18 0.25 -4.57
201173_x_at 201173_x_at NM_006600 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006600.1 /DEF=Homo sapiens nuclear distribution gene C (A.nidulans) homolog (NUDC), mRNA. /FEA=mRNA /GEN=NUDC /PROD=nuclear distribution gene C (A.nidulans)homolog /DB_XREF=gi:5729952 /UG=Hs.263812 nuclear distribution gene C (A.nidulans) homolog /FL=gb:BC002399.1 gb:BC003132.1 gb:AB019408.1 gb:AF130736.1 gb:AF125465.1 gb:AF100760.1 gb:NM_006600.1 NM_006600 nudC nuclear distribution protein NUDC 10726 NM_006600 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 36.53 346.41 1.49 0.18 0.25 -4.57
200636_s_at 200636_s_at NM_002840 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002840.1 /DEF=Homo sapiens protein tyrosine phosphatase, receptor type, F (PTPRF), mRNA. /FEA=mRNA /GEN=PTPRF /PROD=protein tyrosine phosphatase, receptor type, fpolypeptide /DB_XREF=gi:4506310 /UG=Hs.75216 protein tyrosine phosphatase, receptor type, F /FL=gb:NM_002840.1 NM_002840 protein tyrosine phosphatase, receptor type, F PTPRF 5792 NM_002840 /// NM_130440 /// XM_005271079 /// XM_005271080 /// XM_005271081 /// XM_005271082 /// XM_006710795 /// XM_006710796 /// XM_006710797 /// XM_006710798 /// XM_006710799 /// XM_006710800 /// XM_006710801 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 1900121 // negative regulation of receptor binding // inferred from mutant phenotype 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 50.73 454.89 1.49 0.18 0.25 -4.57
201711_x_at 201711_x_at AI681120 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI681120 /FEA=EST /DB_XREF=gi:4891302 /DB_XREF=est:tx44b06.x1 /CLONE=IMAGE:2272403 /UG=Hs.199179 RAN binding protein 2 /FL=gb:NM_006267.2 gb:D42063.1 AI681120 RAN binding protein 2 RANBP2 5903 NM_006267 /// XM_005264002 /// XM_005264003 /// XM_005264004 /// XM_005264005 /// XM_005264006 /// XM_005264007 0000278 // mitotic cell cycle // traceable author statement /// 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006606 // protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0033132 // negative regulation of glucokinase activity // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046907 // intracellular transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0090526 // regulation of gluconeogenesis involved in cellular glucose homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from direct assay /// 0044615 // nuclear pore nuclear basket // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -42.78 278.41 -1.49 0.18 0.25 -4.57
200700_s_at 200700_s_at NM_006854 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006854.2 /DEF=Homo sapiens KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 (KDELR2), mRNA. /FEA=mRNA /GEN=KDELR2 /PROD=KDEL receptor 2 /DB_XREF=gi:8051609 /UG=Hs.118778 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 /FL=gb:NM_006854.2 NM_006854 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 KDELR2 11014 NM_001100603 /// NM_006854 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005046 // KDEL sequence binding // traceable author statement /// 0046923 // ER retention sequence binding // inferred from electronic annotation 61.80 832.25 1.48 0.18 0.25 -4.57
213022_s_at 213022_s_at NM_007124 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_007124.1 /DEF=Homo sapiens utrophin (homologous to dystrophin) (UTRN), mRNA. /FEA=CDS /GEN=UTRN /PROD=utrophin /DB_XREF=gi:6005937 /UG=Hs.251967 utrophin (homologous to dystrophin) /FL=gb:NM_007124.1 NM_007124 utrophin UTRN 7402 NM_007124 /// XM_005267127 /// XM_005267128 /// XM_005267130 /// XM_005267132 /// XM_005267133 /// XM_006715559 /// XM_006715560 0001954 // positive regulation of cell-matrix adhesion // inferred from mutant phenotype /// 0006936 // muscle contraction // traceable author statement /// 0007517 // muscle organ development // traceable author statement /// 2000649 // regulation of sodium ion transmembrane transporter activity // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0031527 // filopodium membrane // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070938 // contractile ring // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017166 // vinculin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -41.67 179.16 -1.48 0.18 0.25 -4.57
202290_at 202290_at NM_014891 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014891.1 /DEF=Homo sapiens PDGF associated protein (HASPP28), mRNA. /FEA=mRNA /GEN=HASPP28 /PROD=PDGF associated protein /DB_XREF=gi:7657440 /UG=Hs.278426 PDGFA associated protein 1 /FL=gb:U41745.1 gb:BC000684.1 gb:NM_014891.1 NM_014891 PDGFA associated protein 1 PDAP1 11333 NM_014891 0007165 // signal transduction // traceable author statement /// 0008283 // cell proliferation // traceable author statement 0044822 // poly(A) RNA binding // inferred from direct assay -55.20 200.45 -1.48 0.18 0.25 -4.57
210990_s_at 210990_s_at U77706 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U77706.1 /DEF=Human laminin alpha 4 chain (LAMA4*-1) mRNA, complete cds. /FEA=mRNA /GEN=LAMA4*-1 /PROD=laminin alpha 4 chain /DB_XREF=gi:1684836 /UG=Hs.78672 laminin, alpha 4 /FL=gb:U77706.1 U77706 laminin, alpha 4 LAMA4 3910 NM_001105206 /// NM_001105207 /// NM_001105208 /// NM_001105209 /// NM_002290 /// XM_005266983 /// XM_005266984 /// XM_006715480 /// XM_006715481 0001568 // blood vessel development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007172 // signal complex assembly // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005605 // basal lamina // traceable author statement /// 0005606 // laminin-1 complex // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -41.33 141.01 -1.48 0.18 0.25 -4.57
209903_s_at 209903_s_at U49844 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U49844.1 /DEF=Human FRAP-related protein (FRP1) mRNA, complete cds. /FEA=mRNA /GEN=FRP1 /PROD=FRAP-related protein /DB_XREF=gi:1235901 /UG=Hs.77613 ataxia telangiectasia and Rad3 related /FL=gb:U49844.1 gb:U76308.1 gb:NM_001184.1 U49844 ATR serine/threonine kinase ATR 545 NM_001184 /// XR_241498 0000077 // DNA damage checkpoint // inferred from direct assay /// 0006260 // DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // traceable author statement /// 0007049 // cell cycle // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0034644 // cellular response to UV // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0043517 // positive regulation of DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0071480 // cellular response to gamma radiation // inferred from direct assay /// 0090399 // replicative senescence // inferred from mutant phenotype 0001741 // XY body // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0032405 // MutLalpha complex binding // inferred from direct assay /// 0032407 // MutSalpha complex binding // inferred from direct assay 23.80 92.97 1.48 0.18 0.25 -4.57
205975_s_at 205975_s_at NM_024501 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024501.1 /DEF=Homo sapiens homeo box D1 (HOXD1), mRNA. /FEA=mRNA /GEN=HOXD1 /PROD=homeo box D1 /DB_XREF=gi:13375631 /UG=Hs.83465 homeo box D1 /FL=gb:AF241528.1 gb:NM_024501.1 NM_024501 homeobox D1 HOXD1 3231 NM_024501 /// XM_005246507 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -23.53 104.89 -1.48 0.18 0.25 -4.57
203560_at 203560_at NM_003878 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003878.1 /DEF=Homo sapiens gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) (GGH), mRNA. /FEA=mRNA /GEN=GGH /PROD=gamma-glutamyl hydrolase (conjugase,folylpolygammaglutamyl hydrolase) precursor /DB_XREF=gi:4503986 /UG=Hs.78619 gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) /FL=gb:U55206.1 gb:NM_003878.1 NM_003878 gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) GGH 8836 NM_003878 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0008238 // exopeptidase activity // traceable author statement /// 0008242 // omega peptidase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0034722 // gamma-glutamyl-peptidase activity // inferred from direct assay -32.85 266.60 -1.48 0.18 0.25 -4.57
203916_at 203916_at NM_003635 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003635.1 /DEF=Homo sapiens N-deacetylaseN-sulfotransferase (heparan glucosaminyl) 2 (NDST2), mRNA. /FEA=mRNA /GEN=NDST2 /PROD=N-deacetylaseN-sulfotransferase (heparanglucosaminyl) 2 /DB_XREF=gi:4505352 /UG=Hs.78473 N-deacetylaseN-sulfotransferase (heparan glucosaminyl) 2 /FL=gb:U36601.1 gb:NM_003635.1 NM_003635 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 NDST2 8509 NM_003635 /// XM_005270255 /// XM_005270256 /// XM_006718046 0002002 // regulation of angiotensin levels in blood // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030210 // heparin biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0015016 // [heparan sulfate]-glucosamine N-sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019213 // deacetylase activity // inferred from electronic annotation 18.92 69.46 1.47 0.18 0.25 -4.57
218250_s_at 218250_s_at NM_013354 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013354.2 /DEF=Homo sapiens CCR4-NOT transcription complex, subunit 7 (CNOT7), mRNA. /FEA=mRNA /GEN=CNOT7 /PROD=CCR4-NOT transcription complex, subunit 7 /DB_XREF=gi:10518495 /UG=Hs.226318 CCR4-NOT transcription complex, subunit 7 /FL=gb:NM_013354.2 gb:L46722.1 NM_013354 CCR4-NOT transcription complex, subunit 7 CNOT7 29883 NM_013354 /// NM_054026 /// XM_005273481 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0000290 // deadenylation-dependent decapping of nuclear-transcribed mRNA // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031047 // gene silencing by RNA // inferred from sequence or structural similarity /// 0033962 // cytoplasmic mRNA processing body assembly // inferred from electronic annotation /// 0035195 // gene silencing by miRNA // traceable author statement /// 0043928 // exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // inferred from mutant phenotype /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from direct assay /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from electronic annotation /// 1900153 // positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from mutant phenotype 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030014 // CCR4-NOT complex // inferred from direct assay /// 0030014 // CCR4-NOT complex // non-traceable author statement 0000175 // 3'-5'-exoribonuclease activity // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004532 // exoribonuclease activity // inferred from direct assay /// 0004535 // poly(A)-specific ribonuclease activity // inferred from direct assay /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -35.85 505.95 -1.47 0.18 0.25 -4.57
202336_s_at 202336_s_at NM_000919 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000919.1 /DEF=Homo sapiens peptidylglycine alpha-amidating monooxygenase (PAM), mRNA. /FEA=mRNA /GEN=PAM /PROD=peptidylglycine alpha-amidating monooxygenase /DB_XREF=gi:4505602 /UG=Hs.83920 peptidylglycine alpha-amidating monooxygenase /FL=gb:M37721.1 gb:NM_000919.1 NM_000919 peptidylglycine alpha-amidating monooxygenase PAM 5066 NM_000919 /// NM_001177306 /// NM_138766 /// NM_138821 /// NM_138822 /// NR_033440 /// XM_006714632 /// XM_006714633 /// XM_006714634 /// XM_006714635 /// XM_006714636 /// XM_006714637 /// XM_006714638 /// XM_006714639 /// XM_006714640 0001519 // peptide amidation // inferred from direct assay /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001676 // long-chain fatty acid metabolic process // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006518 // peptide metabolic process // inferred from electronic annotation /// 0006518 // peptide metabolic process // non-traceable author statement /// 0007076 // mitotic chromosome condensation // inferred from mutant phenotype /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009268 // response to pH // inferred from electronic annotation /// 0009404 // toxin metabolic process // inferred from electronic annotation /// 0018032 // protein amidation // inferred from electronic annotation /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0022602 // ovulation cycle process // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // inferred from electronic annotation /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from electronic annotation /// 0050708 // regulation of protein secretion // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0000793 // condensed chromosome // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030141 // secretory granule // inferred from electronic annotation /// 0030141 // secretory granule // non-traceable author statement /// 0030667 // secretory granule membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003682 // chromatin binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004504 // peptidylglycine monooxygenase activity // inferred from direct assay /// 0004598 // peptidylamidoglycolate lyase activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016715 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -37.33 467.69 -1.47 0.18 0.25 -4.57
202705_at 202705_at NM_004701 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004701.2 /DEF=Homo sapiens cyclin B2 (CCNB2), mRNA. /FEA=mRNA /GEN=CCNB2 /PROD=cyclin B2 /DB_XREF=gi:10938017 /UG=Hs.194698 cyclin B2 /FL=gb:NM_004701.2 gb:AF002822.1 gb:AB020981.1 gb:AL080146.1 NM_004701 cyclin B2 CCNB2 9133 NM_004701 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0040007 // growth // inferred from electronic annotation /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0048538 // thymus development // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation 33.73 247.94 1.47 0.18 0.25 -4.57
201464_x_at 201464_x_at BG491844 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG491844 /FEA=EST /DB_XREF=gi:13453356 /DB_XREF=est:602535931T1 /CLONE=IMAGE:4684998 /UG=Hs.78465 v-jun avian sarcoma virus 17 oncogene homolog /FL=gb:BC002646.1 gb:NM_002228.2 BG491844 jun proto-oncogene JUN 3725 NM_002228 0001525 // angiogenesis // inferred from electronic annotation /// 0001774 // microglial cell activation // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007184 // SMAD protein import into nucleus // inferred from direct assay /// 0007568 // aging // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009314 // response to radiation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035026 // leading edge cell differentiation // inferred from electronic annotation /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043922 // negative regulation by host of viral transcription // inferred from direct assay /// 0043923 // positive regulation by host of viral transcription // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred by curator /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // traceable author statement /// 0051365 // cellular response to potassium ion starvation // inferred from electronic annotation /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from direct assay /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0000228 // nuclear chromosome // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from electronic annotation 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred by curator /// 0003677 // DNA binding // traceable author statement /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred by curator /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0035497 // cAMP response element binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070412 // R-SMAD binding // inferred from physical interaction /// 0071837 // HMG box domain binding // inferred from electronic annotation -174.08 694.61 -1.47 0.18 0.25 -4.57
218118_s_at 218118_s_at NM_006327 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006327.1 /DEF=Homo sapiens translocase of inner mitochondrial membrane 23 (yeast) homolog (TIM23), mRNA. /FEA=mRNA /GEN=TIM23 /PROD=translocase of inner mitochondrial membrane 23(yeast) homolog /DB_XREF=gi:5454121 /UG=Hs.283684 translocase of inner mitochondrial membrane 23 (yeast) homolog /FL=gb:AF030162.1 gb:NM_006327.1 NM_006327 translocase of inner mitochondrial membrane 23 homolog (yeast) /// translocase of inner mitochondrial membrane 23 homolog B (yeast) TIMM23 /// TIMM23B 100287932 /// 100652748 NM_001290117 /// NM_001290118 /// NM_006327 /// NR_073029 /// NR_073030 /// NR_110767 /// XM_005278340 /// XM_006710232 /// XM_006718099 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071806 // protein transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from direct assay /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031305 // integral component of mitochondrial inner membrane // inferred from direct assay 0004649 // poly(ADP-ribose) glycohydrolase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 43.80 243.25 1.47 0.18 0.25 -4.57
218038_at 218038_at NM_018035 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018035.1 /DEF=Homo sapiens hypothetical protein FLJ10241 (FLJ10241), mRNA. /FEA=mRNA /GEN=FLJ10241 /PROD=hypothetical protein FLJ10241 /DB_XREF=gi:8922302 /UG=Hs.279851 hypothetical protein FLJ10241 /FL=gb:NM_018035.1 NM_018035 ATP5S-like ATP5SL 55101 NM_001167867 /// NM_001167868 /// NM_001167869 /// NM_001167870 /// NM_001167871 /// NM_018035 /// NR_030765 /// XM_006723258 0005739 // mitochondrion // inferred from electronic annotation 20.75 104.03 1.47 0.18 0.25 -4.57
218462_at 218462_at NM_025065 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025065.1 /DEF=Homo sapiens hypothetical protein FLJ12475 (FLJ12475), mRNA. /FEA=mRNA /GEN=FLJ12475 /PROD=hypothetical protein FLJ12475 /DB_XREF=gi:13376604 /UG=Hs.287863 hypothetical protein FLJ12475 /FL=gb:NM_025065.1 NM_025065 ribosome production factor 1 homolog (S. cerevisiae) RPF1 80135 NM_025065 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0019843 // rRNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 29.45 334.48 1.46 0.18 0.25 -4.57
202006_at 202006_at NM_002835 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002835.1 /DEF=Homo sapiens protein tyrosine phosphatase, non-receptor type 12 (PTPN12), mRNA. /FEA=mRNA /GEN=PTPN12 /PROD=protein tyrosine phosphatase, non-receptor type12 /DB_XREF=gi:4506286 /UG=Hs.62 protein tyrosine phosphatase, non-receptor type 12 /FL=gb:D13380.1 gb:M93425.1 gb:NM_002835.1 NM_002835 protein tyrosine phosphatase, non-receptor type 12 PTPN12 5782 NM_001131008 /// NM_001131009 /// NM_002835 /// XM_005250518 /// XM_006716073 /// XM_006716074 0006470 // protein dephosphorylation // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction -35.07 299.54 -1.46 0.19 0.25 -4.57
214656_x_at 214656_x_at BE790157 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE790157 /FEA=EST /DB_XREF=gi:10211355 /DB_XREF=est:601482981F1 /CLONE=IMAGE:3885236 /UG=Hs.286226 myosin IB BE790157 myosin IC MYO1C 4641 NM_001080779 /// NM_001080950 /// NM_033375 /// XM_005256655 0006605 // protein targeting // inferred from direct assay /// 0006612 // protein targeting to membrane // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0038089 // positive regulation of cell migration by vascular endothelial growth factor signaling pathway // inferred from mutant phenotype /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0090314 // positive regulation of protein targeting to membrane // inferred from mutant phenotype /// 1900748 // positive regulation of vascular endothelial growth factor signaling pathway // inferred from mutant phenotype /// 2000810 // regulation of tight junction assembly // inferred from mutant phenotype 0001725 // stress fiber // inferred from direct assay /// 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0005903 // brush border // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0016461 // unconventional myosin complex // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from direct assay /// 0032420 // stereocilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0045160 // myosin I complex // inferred from electronic annotation /// 0060171 // stereocilium membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation 26.63 192.76 1.46 0.19 0.25 -4.57
202300_at 202300_at NM_006402 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006402.1 /DEF=Homo sapiens hepatitis B virus x-interacting protein (9.6kD) (XIP), mRNA. /FEA=mRNA /GEN=XIP /PROD=hepatitis B virus x-interacting protein /DB_XREF=gi:5454169 /UG=Hs.80464 hepatitis B virus x-interacting protein (9.6kD) /FL=gb:AF029890.1 gb:NM_006402.1 NM_006402 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 LAMTOR5 10542 NM_006402 0008361 // regulation of cell size // inferred from mutant phenotype /// 0009615 // response to virus // traceable author statement /// 0019079 // viral genome replication // inferred from electronic annotation /// 0032008 // positive regulation of TOR signaling // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0061462 // protein localization to lysosome // inferred from mutant phenotype /// 0071230 // cellular response to amino acid stimulus // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0071986 // Ragulator complex // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from direct assay 68.80 485.48 1.46 0.19 0.26 -4.57
212262_at 212262_at AA149639 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA149639 /FEA=EST /DB_XREF=gi:1720440 /DB_XREF=est:zl39c06.s1 /CLONE=IMAGE:504298 /UG=Hs.15020 homolog of mouse quaking QKI (KH domain RNA binding protein) /FL=gb:AF142419.1 gb:AF142422.1 AA149639 QKI, KH domain containing, RNA binding QKI 9444 NM_006775 /// NM_206853 /// NM_206854 /// NM_206855 /// XM_005267224 /// XR_245557 /// XR_427977 /// XR_427978 0001570 // vasculogenesis // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0042759 // long-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -48.48 250.76 -1.46 0.19 0.26 -4.57
215792_s_at 215792_s_at AL109978 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL109978.1 /DEF=Novel human gene mapping to chomosome 1. /FEA=mRNA /PROD=hypothetical protein /DB_XREF=gi:5764009 /UG=Hs.261134 hypothetical protein FLJ10737 AL109978 DnaJ (Hsp40) homolog, subfamily C, member 11 DNAJC11 55735 NM_018198 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 35.07 128.01 1.46 0.19 0.26 -4.57
211703_s_at 211703_s_at AF353990 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF353990.1 /DEF=Homo sapiens beta-amyloid binding protein precursor (BBP) mRNA, complete cds. /FEA=mRNA /GEN=BBP /PROD=beta-amyloid binding protein precursor /DB_XREF=gi:13625458 /FL=gb:AF353990.1 AF353990 TM2 domain containing 1 TM2D1 83941 NM_032027 /// XM_005271250 /// XR_246299 0006915 // apoptotic process // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // inferred from electronic annotation 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 26.42 178.39 1.45 0.19 0.26 -4.57
221853_s_at 221853_s_at N39536 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N39536 /FEA=EST /DB_XREF=gi:1162743 /DB_XREF=est:yv27d07.s1 /CLONE=IMAGE:243949 /UG=Hs.322466 Homo sapiens cDNA: FLJ23491 fis, clone LNG00825, highly similar to HSPM5 Human mRNA for pM5 protein N39536 uncharacterized LOC101060373 /// NODAL modulator 1 /// NODAL modulator 2 /// NODAL modulator 3 LOC101060373 /// NOMO1 /// NOMO2 /// NOMO3 23420 /// 283820 /// 408050 /// 101060373 NM_001004060 /// NM_001004067 /// NM_014287 /// NM_173614 /// XM_005255318 /// XM_006725195 /// XR_253508 /// XR_430727 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation -75.20 492.47 -1.45 0.19 0.26 -4.57
204955_at 204955_at NM_006307 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006307.1 /DEF=Homo sapiens sushi-repeat-containing protein, X chromosome (SRPX), mRNA. /FEA=mRNA /GEN=SRPX /PROD=sushi-repeat-containing protein, X chromosome /DB_XREF=gi:5454085 /UG=Hs.15154 sushi-repeat-containing protein, X chromosome /FL=gb:U78093.1 gb:U61374.1 gb:NM_006307.1 NM_006307 sushi-repeat containing protein, X-linked SRPX 8406 NM_001170750 /// NM_001170751 /// NM_001170752 /// NM_006307 0001845 // phagolysosome assembly // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0033554 // cellular response to stress // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0060244 // negative regulation of cell proliferation involved in contact inhibition // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005776 // autophagic vacuole // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // traceable author statement 0005515 // protein binding // inferred from electronic annotation -157.97 877.01 -1.45 0.19 0.26 -4.57
213048_s_at 213048_s_at W26593 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W26593 /FEA=EST /DB_XREF=gi:1307454 /DB_XREF=est:33g5 /UG=Hs.145279 SET translocation (myeloid leukemia-associated) W26593 Homo sapiens mRNA from HIV associated non-Hodgkins lymphoma (clone hl1-98). Y16709 -443.58 1991.11 -1.45 0.19 0.26 -4.57
213892_s_at 213892_s_at AA927724 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA927724 /FEA=EST /DB_XREF=gi:3076544 /DB_XREF=est:om72g04.s1 /CLONE=IMAGE:1552758 /UG=Hs.28914 adenine phosphoribosyltransferase AA927724 adenine phosphoribosyltransferase APRT 353 NM_000485 /// NM_001030018 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006166 // purine ribonucleoside salvage // inferred from electronic annotation /// 0006168 // adenine salvage // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007625 // grooming behavior // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0043101 // purine-containing compound salvage // traceable author statement /// 0044209 // AMP salvage // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002055 // adenine binding // inferred from electronic annotation /// 0003999 // adenine phosphoribosyltransferase activity // traceable author statement /// 0016208 // AMP binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 26.10 187.25 1.45 0.19 0.26 -4.57
209141_at 209141_at AW299555 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW299555 /FEA=EST /DB_XREF=gi:6709232 /DB_XREF=est:xs51d10.x1 /CLONE=IMAGE:2773171 /UG=Hs.78563 ubiquitin-conjugating enzyme E2G 1 (homologous to C. elegans UBC7) /FL=gb:BC002775.1 gb:NM_003342.1 gb:D78514.1 AW299555 ubiquitin-conjugating enzyme E2G 1 UBE2G1 7326 NM_003342 /// NM_182682 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -38.17 422.56 -1.45 0.19 0.26 -4.57
208754_s_at 208754_s_at AL162068 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL162068.1 /DEF=Homo sapiens mRNA; cDNA DKFZp762G106 (from clone DKFZp762G106); complete cds. /FEA=mRNA /GEN=DKFZp762G106 /PROD=hypothetical protein /DB_XREF=gi:7328143 /UG=Hs.179662 nucleosome assembly protein 1-like 1 /FL=gb:BC002387.1 gb:AL162068.1 AL162068 nucleosome assembly protein 1-like 1 NAP1L1 4673 NM_004537 /// NM_139207 /// XM_005268895 /// XM_005268896 /// XM_006719422 /// XM_006719423 /// XM_006719424 /// XM_006719425 /// XR_245930 /// XR_245931 /// XR_245932 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 28.68 326.86 1.45 0.19 0.26 -4.57
209418_s_at 209418_s_at BC003615 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003615.1 /DEF=Homo sapiens, gene from NF2meningioma region of 22q12, clone MGC:1540, mRNA, complete cds. /FEA=mRNA /PROD=gene from NF2meningioma region of 22q12 /DB_XREF=gi:13177658 /UG=Hs.75361 gene from NF2meningioma region of 22q12 /FL=gb:BC003615.1 gb:NM_003678.1 gb:AB023200.1 BC003615 THO complex 5 THOC5 8563 NM_001002877 /// NM_001002878 /// NM_001002879 /// NM_003678 /// XM_005261797 /// XM_005261798 /// XM_005261799 /// XM_005261800 /// XM_005261801 /// XM_006724347 /// XR_244394 /// XR_430413 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030224 // monocyte differentiation // inferred from direct assay /// 0032786 // positive regulation of DNA-templated transcription, elongation // inferred from mutant phenotype /// 0045650 // negative regulation of macrophage differentiation // inferred from electronic annotation /// 0046784 // viral mRNA export from host cell nucleus // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation /// 0060215 // primitive hemopoiesis // inferred from sequence or structural similarity /// 2000002 // negative regulation of DNA damage checkpoint // inferred from mutant phenotype 0000346 // transcription export complex // inferred from direct assay /// 0000347 // THO complex // inferred from direct assay /// 0000445 // THO complex part of transcription export complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -19.42 120.01 -1.45 0.19 0.26 -4.57
200820_at 200820_at NM_002812 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002812.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 (PSMD8), mRNA. /FEA=mRNA /GEN=PSMD8 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 8 /DB_XREF=gi:4506232 /UG=Hs.78466 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 /FL=gb:D38047.1 gb:BC001164.1 gb:NM_002812.1 NM_002812 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 PSMD8 5714 NM_002812 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // inferred from electronic annotation /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay -22.02 341.39 -1.45 0.19 0.26 -4.57
204236_at 204236_at NM_002017 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002017.2 /DEF=Homo sapiens Friend leukemia virus integration 1 (FLI1), mRNA. /FEA=mRNA /GEN=FLI1 /PROD=Friend leukemia virus integration 1 /DB_XREF=gi:7110592 /UG=Hs.108043 Friend leukemia virus integration 1 /FL=gb:BC001670.1 gb:M98833.3 gb:NM_002017.2 NM_002017 Fli-1 proto-oncogene, ETS transcription factor FLI1 2313 NM_001167681 /// NM_001271010 /// NM_001271012 /// NM_002017 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007599 // hemostasis // traceable author statement /// 0009887 // organ morphogenesis // traceable author statement /// 0030154 // cell differentiation // not recorded 0005634 // nucleus // not recorded 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -62.98 190.86 -1.45 0.19 0.26 -4.57
208613_s_at 208613_s_at AV712733 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV712733 /FEA=EST /DB_XREF=gi:10732039 /DB_XREF=est:AV712733 /CLONE=DCAACE01 /UG=Hs.81008 filamin B, beta (actin-binding protein-278) /FL=gb:AF043045.1 gb:AF042166.1 gb:M62994.1 gb:NM_001457.1 AV712733 filamin B, beta FLNB 2317 NM_001164317 /// NM_001164318 /// NM_001164319 /// NM_001457 /// XM_005264977 /// XM_005264978 /// XM_005264981 /// XM_005264982 /// XM_006713067 0007016 // cytoskeletal anchoring at plasma membrane // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016021 // integral component of membrane // non-traceable author statement /// 0030018 // Z disc // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -88.72 702.04 -1.45 0.19 0.26 -4.57
213477_x_at 213477_x_at AL515273 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL515273 /FEA=EST /DB_XREF=gi:12778766 /DB_XREF=est:AL515273 /CLONE=CL0BB016ZE08 (3 prime) /UG=Hs.284136 PRO2047 protein AL515273 eukaryotic translation elongation factor 1 alpha 1 EEF1A1 1915 NM_001402 /// NM_001403 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -532.78 4619.16 -1.45 0.19 0.26 -4.57
202345_s_at 202345_s_at NM_001444 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001444.1 /DEF=Homo sapiens fatty acid binding protein 5 (psoriasis-associated) (FABP5), mRNA. /FEA=mRNA /GEN=FABP5 /PROD=fatty acid binding protein 5(psoriasis-associated) /DB_XREF=gi:4557580 /UG=Hs.153179 fatty acid binding protein 5 (psoriasis-associated) /FL=gb:M94856.1 gb:NM_001444.1 NM_001444 fatty acid binding protein 5 (psoriasis-associated) FABP5 2171 NM_001444 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // traceable author statement /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008544 // epidermis development // traceable author statement /// 0009611 // response to wounding // inferred from electronic annotation /// 0015758 // glucose transport // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // traceable author statement -142.82 1030.29 -1.44 0.19 0.26 -4.57
202545_at 202545_at NM_006254 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006254.1 /DEF=Homo sapiens protein kinase C, delta (PRKCD), mRNA. /FEA=mRNA /GEN=PRKCD /PROD=protein kinase C, delta /DB_XREF=gi:5453969 /UG=Hs.155342 protein kinase C, delta /FL=gb:L07860.1 gb:L07861.1 gb:D10495.1 gb:NM_006254.1 NM_006254 protein kinase C, delta PRKCD 5580 NM_006254 /// NM_212539 /// XM_006713257 /// XM_006713258 /// XM_006713259 0001666 // response to hypoxia // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009408 // response to heat // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010469 // regulation of receptor activity // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0015810 // aspartate transport // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0023021 // termination of signal transduction // inferred from mutant phenotype /// 0030168 // platelet activation // traceable author statement /// 0030837 // negative regulation of actin filament polymerization // inferred from sequence or structural similarity /// 0032091 // negative regulation of protein binding // traceable author statement /// 0032613 // interleukin-10 production // inferred from electronic annotation /// 0032615 // interleukin-12 production // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032930 // positive regulation of superoxide anion generation // inferred from mutant phenotype /// 0032963 // collagen metabolic process // inferred from electronic annotation /// 0034351 // negative regulation of glial cell apoptotic process // inferred from mutant phenotype /// 0035307 // positive regulation of protein dephosphorylation // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042100 // B cell proliferation // inferred from electronic annotation /// 0042119 // neutrophil activation // inferred from direct assay /// 0042149 // cellular response to glucose starvation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from mutant phenotype /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0046627 // negative regulation of insulin receptor signaling pathway // traceable author statement /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050728 // negative regulation of inflammatory response // inferred by curator /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0050821 // protein stabilization // non-traceable author statement /// 0051490 // negative regulation of filopodium assembly // inferred from sequence or structural similarity /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0090331 // negative regulation of platelet aggregation // inferred from sequence or structural similarity /// 0090398 // cellular senescence // inferred from mutant phenotype /// 1900163 // positive regulation of phospholipid scramblase activity // inferred from mutant phenotype /// 2000304 // positive regulation of ceramide biosynthetic process // inferred from mutant phenotype /// 2000753 // positive regulation of glucosylceramide catabolic process // inferred from mutant phenotype /// 2000755 // positive regulation of sphingomyelin catabolic process // inferred from mutant phenotype /// 2001022 // positive regulation of response to DNA damage stimulus // inferred from mutant phenotype /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004697 // protein kinase C activity // inferred from sequence or structural similarity /// 0004699 // calcium-independent protein kinase C activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008047 // enzyme activator activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070976 // TIR domain binding // inferred from electronic annotation -21.00 29.95 -1.44 0.19 0.26 -4.57
204342_at 204342_at NM_013386 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013386.1 /DEF=Homo sapiens hypothetical protein (DKFZp586G0123), mRNA. /FEA=mRNA /GEN=DKFZp586G0123 /PROD=hypothetical protein /DB_XREF=gi:9558726 /UG=Hs.24713 hypothetical protein /FL=gb:AL050209.1 gb:NM_013386.1 NM_013386 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 SLC25A24 29957 NM_013386 /// NM_213651 0006810 // transport // inferred from electronic annotation /// 0006839 // mitochondrial transport // inferred from mutant phenotype /// 0010941 // regulation of cell death // inferred from mutant phenotype /// 0015867 // ATP transport // inferred from mutant phenotype /// 0034599 // cellular response to oxidative stress // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay 0005347 // ATP transmembrane transporter activity // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 63.05 274.45 1.44 0.19 0.26 -4.57
211063_s_at 211063_s_at BC006403 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006403.1 /DEF=Homo sapiens, NCK adaptor protein 1, clone MGC:12668, mRNA, complete cds. /FEA=mRNA /PROD=NCK adaptor protein 1 /DB_XREF=gi:13623576 /FL=gb:BC006403.1 BC006403 NCK adaptor protein 1 NCK1 4690 NM_001190796 /// NM_001291999 /// NM_006153 /// XM_005247498 /// XM_006713650 /// XM_006713651 /// XM_006713652 0006417 // regulation of translation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007172 // signal complex assembly // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0016477 // cell migration // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from mutant phenotype /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0042110 // T cell activation // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051707 // response to other organism // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0012506 // vesicle membrane // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008093 // cytoskeletal adaptor activity // non-traceable author statement /// 0019887 // protein kinase regulator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030159 // receptor signaling complex scaffold activity // non-traceable author statement /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction 18.97 172.84 1.44 0.19 0.26 -4.57
204641_at 204641_at NM_002497 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002497.1 /DEF=Homo sapiens NIMA (never in mitosis gene a)-related kinase 2 (NEK2), mRNA. /FEA=mRNA /GEN=NEK2 /PROD=NIMA (never in mitosis gene a)-related kinase 2 /DB_XREF=gi:4505372 /UG=Hs.153704 NIMA (never in mitosis gene a)-related kinase 2 /FL=gb:NM_002497.1 gb:U11050.1 NM_002497 NIMA-related kinase 2 NEK2 4751 NM_001204182 /// NM_001204183 /// NM_002497 /// XM_005273147 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001824 // blastocyst development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from direct assay /// 0007067 // mitotic nuclear division // traceable author statement /// 0007088 // regulation of mitosis // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0046602 // regulation of mitotic centrosome separation // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0051225 // spindle assembly // traceable author statement /// 0051299 // centrosome separation // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051988 // regulation of attachment of spindle microtubules to kinetochore // inferred from mutant phenotype /// 0090307 // spindle assembly involved in mitosis // inferred from electronic annotation /// 1903126 // negative regulation of centriole-centriole cohesion // inferred from mutant phenotype 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0043234 // protein complex // inferred from mutant phenotype /// 0045171 // intercellular bridge // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -25.50 102.70 -1.44 0.19 0.26 -4.57
205770_at 205770_at NM_000637 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000637.1 /DEF=Homo sapiens glutathione reductase (GSR), mRNA. /FEA=mRNA /GEN=GSR /PROD=glutathione reductase /DB_XREF=gi:10835188 /UG=Hs.121524 glutathione reductase /FL=gb:NM_000637.1 gb:AF228704.1 NM_000637 glutathione reductase GSR 2936 NM_000637 /// NM_001195102 /// NM_001195103 /// NM_001195104 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004362 // glutathione-disulfide reductase activity // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016668 // oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation -22.18 86.19 -1.44 0.19 0.26 -4.57
202363_at 202363_at AF231124 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF231124.1 /DEF=Homo sapiens testican-1 mRNA, complete cds. /FEA=mRNA /PROD=testican-1 /DB_XREF=gi:7248844 /UG=Hs.93029 sparcosteonectin, cwcv and kazal-like domains proteoglycan (testican) /FL=gb:NM_004598.1 gb:AF231124.1 AF231124 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 SPOCK1 6695 NM_004598 0001558 // regulation of cell growth // non-traceable author statement /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0007155 // cell adhesion // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0010812 // negative regulation of cell-substrate adhesion // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0010977 // negative regulation of neuron projection development // inferred from direct assay /// 0021953 // central nervous system neuron differentiation // inferred from sequence or structural similarity /// 0022008 // neurogenesis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0014069 // postsynaptic density // non-traceable author statement /// 0016528 // sarcoplasm // inferred from sequence or structural similarity /// 0031594 // neuromuscular junction // inferred from sequence or structural similarity /// 0033268 // node of Ranvier // inferred from sequence or structural similarity 0004867 // serine-type endopeptidase inhibitor activity // non-traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008191 // metalloendopeptidase inhibitor activity // inferred from direct assay -80.50 1399.20 -1.44 0.19 0.26 -4.57
217752_s_at 217752_s_at NM_018235 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018235.1 /DEF=Homo sapiens hypothetical protein FLJ10830 (FLJ10830), mRNA. /FEA=mRNA /GEN=FLJ10830 /PROD=hypothetical protein FLJ10830 /DB_XREF=gi:8922698 /UG=Hs.273230 hypothetical protein FLJ10830 /FL=gb:BC001375.1 gb:BC003176.1 gb:NM_018235.1 NM_018235 CNDP dipeptidase 2 (metallopeptidase M20 family) CNDP2 55748 NM_001168499 /// NM_018235 /// XM_005266728 /// XM_006722502 /// XM_006722503 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1901687 // glutathione derivative biosynthetic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004180 // carboxypeptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0034701 // tripeptidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -34.60 255.05 -1.44 0.19 0.26 -4.57
35150_at 35150_at X60592 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. X60592:Human CDw40 mRNA for nerve growth factor receptor-related B-lymphocyte activation molecule /cds=(47,880) /gb=X60592 /gi=29850 /ug=Hs.25648 /len=1004 X60592 CD40 molecule, TNF receptor superfamily member 5 CD40 958 NM_001250 /// NM_152854 /// XM_005260617 /// XM_005260618 /// XM_005260619 /// XM_006723889 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0002768 // immune response-regulating cell surface receptor signaling pathway // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0030168 // platelet activation // non-traceable author statement /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // inferred from electronic annotation /// 0032855 // positive regulation of Rac GTPase activity // inferred from mutant phenotype /// 0042100 // B cell proliferation // non-traceable author statement /// 0042113 // B cell activation // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0043089 // positive regulation of Cdc42 GTPase activity // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043406 // positive regulation of MAP kinase activity // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048304 // positive regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0050776 // regulation of immune response // traceable author statement /// 0051023 // regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051607 // defense response to virus // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0090037 // positive regulation of protein kinase C signaling // inferred from mutant phenotype /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0035631 // CD40 receptor complex // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003823 // antigen binding // inferred from electronic annotation /// 0004871 // signal transducer activity // traceable author statement /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction 35.65 179.18 1.44 0.19 0.26 -4.57
211943_x_at 211943_x_at AL565449 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL565449 /FEA=EST /DB_XREF=gi:12916836 /DB_XREF=est:AL565449 /CLONE=CS0DF005YE20 (3 prime) /UG=Hs.279860 tumor protein, translationally-controlled 1 AL565449 uncharacterized LOC101928826 /// tumor protein, translationally-controlled 1 LOC101928826 /// TPT1 7178 /// 101928826 NM_001286272 /// NM_001286273 /// NM_003295 /// XR_242670 /// XR_250536 /// XR_252641 0006816 // calcium ion transport // inferred by curator /// 0006874 // cellular calcium ion homeostasis // inferred by curator /// 0009615 // response to virus // inferred from expression pattern /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype /// 2000384 // negative regulation of ectoderm development // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005771 // multivesicular body // inferred from direct assay /// 0045298 // tubulin complex // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -345.20 3353.88 -1.43 0.19 0.26 -4.57
200780_x_at 200780_x_at NM_000516 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000516.2 /DEF=Homo sapiens guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 (GNAS1), mRNA. /FEA=mRNA /GEN=GNAS1 /PROD=guanine nucleotide binding protein (G protein),alpha stimulating activity polypeptide 1 /DB_XREF=gi:8659565 /UG=Hs.273385 guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 /FL=gb:BC002722.1 gb:AF088185.1 gb:NM_000516.2 NM_000516 GNAS complex locus GNAS 2778 NM_000516 /// NM_001077488 /// NM_001077489 /// NM_001077490 /// NM_016592 /// NM_080425 /// NM_080426 /// NR_003259 /// XM_005260401 /// XM_005260402 /// XM_006723781 /// XM_006723782 0001501 // skeletal system development // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006171 // cAMP biosynthetic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007190 // activation of adenylate cyclase activity // traceable author statement /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // not recorded /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007565 // female pregnancy // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007606 // sensory perception of chemical stimulus // not recorded /// 0007608 // sensory perception of smell // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0009306 // protein secretion // non-traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040032 // post-embryonic body morphogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0046907 // intracellular transport // non-traceable author statement /// 0048589 // developmental growth // inferred from direct assay /// 0048589 // developmental growth // inferred from mutant phenotype /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050890 // cognition // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0051216 // cartilage development // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060348 // bone development // inferred from direct assay /// 0060348 // bone development // inferred from mutant phenotype /// 0060789 // hair follicle placode formation // inferred from direct assay /// 0060789 // hair follicle placode formation // inferred from mutant phenotype /// 0070527 // platelet aggregation // inferred from direct assay /// 0070527 // platelet aggregation // inferred from mutant phenotype /// 0071107 // response to parathyroid hormone // inferred from mutant phenotype /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071514 // genetic imprinting // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity /// 0071880 // adenylate cyclase-activating adrenergic receptor signaling pathway // inferred from direct assay 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0004016 // adenylate cyclase activity // traceable author statement /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from direct assay /// 0005159 // insulin-like growth factor receptor binding // /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // /// 0031748 // D1 dopamine receptor binding // /// 0031852 // mu-type opioid receptor binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051430 // corticotropin-releasing hormone receptor 1 binding // -357.02 2414.74 -1.43 0.19 0.26 -4.57
211970_x_at 211970_x_at BG026805 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG026805 /FEA=EST /DB_XREF=gi:12414790 /DB_XREF=est:602294278F1 /CLONE=IMAGE:4388898 /UG=Hs.14376 actin, gamma 1 BG026805 actin, beta /// actin, gamma 1 ACTB /// ACTG1 60 /// 71 NM_001101 /// NM_001199954 /// NM_001614 /// NR_037688 /// XM_006715764 /// XM_006722048 /// XM_006722049 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -863.85 5540.18 -1.43 0.19 0.26 -4.57
214701_s_at 214701_s_at AJ276395 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ276395.1 /DEF=Homo sapiens mRNA for MSF-FN70 (FN gene). /FEA=mRNA /GEN=FN /PROD=migration stimulation factor FN70 /DB_XREF=gi:12053816 /UG=Hs.321592 Homo sapiens mRNA for MSF-FN70 (FN gene) AJ276395 fibronectin 1 FN1 2335 NM_002026 /// NM_054034 /// NM_212474 /// NM_212475 /// NM_212476 /// NM_212478 /// NM_212482 /// XM_005246397 /// XM_005246398 /// XM_005246399 /// XM_005246400 /// XM_005246401 /// XM_005246402 /// XM_005246403 /// XM_005246404 /// XM_005246405 /// XM_005246406 /// XM_005246407 /// XM_005246408 /// XM_005246409 /// XM_005246410 /// XM_005246411 /// XM_005246412 /// XM_005246413 /// XM_005246414 /// XM_005246415 /// XM_005246416 /// XM_005246417 0001525 // angiogenesis // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007161 // calcium-independent cell-matrix adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009611 // response to wounding // non-traceable author statement /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0016477 // cell migration // non-traceable author statement /// 0018149 // peptide cross-linking // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0042060 // wound healing // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from direct assay /// 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0008201 // heparin binding // non-traceable author statement /// 0016504 // peptidase activator activity // inferred from electronic annotation -169.95 350.00 -1.43 0.19 0.26 -4.58
211761_s_at 211761_s_at BC005975 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005975.1 /DEF=Homo sapiens, calcyclin binding protein, clone MGC:14660, mRNA, complete cds. /FEA=mRNA /PROD=calcyclin binding protein /DB_XREF=gi:13543650 /FL=gb:BC005975.1 BC005975 calcyclin binding protein CACYBP 27101 NM_001007214 /// NM_014412 /// XM_005245092 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0060416 // response to growth hormone // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030877 // beta-catenin destruction complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 44.70 267.40 1.43 0.19 0.26 -4.58
217869_at 217869_at NM_016142 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016142.1 /DEF=Homo sapiens steroid dehydrogenase homolog (LOC51144), mRNA. /FEA=mRNA /GEN=LOC51144 /PROD=steroid dehydrogenase homolog /DB_XREF=gi:7705854 /UG=Hs.279617 steroid dehydrogenase homolog /FL=gb:AF078850.1 gb:NM_016142.1 NM_016142 hydroxysteroid (17-beta) dehydrogenase 12 HSD17B12 51144 NM_016142 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006703 // estrogen biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0001968 // fibronectin binding // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 33.68 525.04 1.42 0.20 0.27 -4.58
213145_at 213145_at BF001666 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF001666 /FEA=EST /DB_XREF=gi:10701941 /DB_XREF=est:7g91d12.x1 /CLONE=IMAGE:3313847 /UG=Hs.12460 Homo sapiens clone 23870 mRNA sequence BF001666 F-box and leucine-rich repeat protein 14 FBXL14 144699 NM_152441 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -19.02 95.76 -1.42 0.20 0.27 -4.58
208689_s_at 208689_s_at BC003560 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003560.1 /DEF=Homo sapiens, ribophorin II, clone MGC:1817, mRNA, complete cds. /FEA=mRNA /PROD=ribophorin II /DB_XREF=gi:13097707 /UG=Hs.75722 ribophorin II /FL=gb:BC003560.1 gb:NM_002951.1 BC003560 ribophorin II RPN2 6185 NM_001135771 /// NM_002951 /// XM_005260491 /// XM_006723849 /// XM_006723850 /// XM_006723851 /// XM_006723852 0006412 // translation // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // non-traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from electronic annotation -71.30 787.33 -1.42 0.20 0.27 -4.58
212718_at 212718_at BF797555 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF797555 /FEA=EST /DB_XREF=gi:12102609 /DB_XREF=est:602257339F1 /CLONE=IMAGE:4340912 /UG=Hs.5324 hypothetical protein BF797555 poly(A) polymerase alpha PAPOLA 10914 NM_001252006 /// NM_001252007 /// NM_001293627 /// NM_001293628 /// NM_001293632 /// NM_032632 /// XM_005267280 /// XM_005267281 /// XM_005267282 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006378 // mRNA polyadenylation // non-traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0043631 // RNA polyadenylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // not recorded /// 0004652 // polynucleotide adenylyltransferase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -47.62 568.36 -1.42 0.20 0.27 -4.58
216442_x_at 216442_x_at AK026737 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026737.1 /DEF=Homo sapiens cDNA: FLJ23084 fis, clone LNG06602, highly similar to HSFIB1 Human mRNA for fibronectin (FN precursor). /FEA=mRNA /DB_XREF=gi:10439658 /UG=Hs.287820 fibronectin 1 AK026737 fibronectin 1 FN1 2335 NM_002026 /// NM_054034 /// NM_212474 /// NM_212475 /// NM_212476 /// NM_212478 /// NM_212482 /// XM_005246397 /// XM_005246398 /// XM_005246399 /// XM_005246400 /// XM_005246401 /// XM_005246402 /// XM_005246403 /// XM_005246404 /// XM_005246405 /// XM_005246406 /// XM_005246407 /// XM_005246408 /// XM_005246409 /// XM_005246410 /// XM_005246411 /// XM_005246412 /// XM_005246413 /// XM_005246414 /// XM_005246415 /// XM_005246416 /// XM_005246417 0001525 // angiogenesis // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007161 // calcium-independent cell-matrix adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009611 // response to wounding // non-traceable author statement /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0016477 // cell migration // non-traceable author statement /// 0018149 // peptide cross-linking // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0042060 // wound healing // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from direct assay /// 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0008201 // heparin binding // non-traceable author statement /// 0016504 // peptidase activator activity // inferred from electronic annotation -377.72 3294.69 -1.42 0.20 0.27 -4.58
200097_s_at 200097_s_at AI701949 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI701949 /FEA=EST /DB_XREF=gi:4989849 /DB_XREF=est:tq09c07.x1 /CLONE=IMAGE:2208300 /UG=Hs.129548 heterogeneous nuclear ribonucleoprotein K AI701949 heterogeneous nuclear ribonucleoprotein K HNRNPK 3190 NM_002140 /// NM_031262 /// NM_031263 /// XM_005251960 /// XM_005251961 /// XM_005251963 /// XM_005251964 /// XM_005251965 /// XM_005251966 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010988 // regulation of low-density lipoprotein particle clearance // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045716 // positive regulation of low-density lipoprotein particle receptor biosynthetic process // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0072369 // regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0002102 // podosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from mutant phenotype /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from mutant phenotype /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -37.68 1054.99 -1.42 0.20 0.27 -4.58
206854_s_at 206854_s_at NM_003188 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003188.1 /DEF=Homo sapiens mitogen-activated protein kinase kinase kinase 7 (MAP3K7), mRNA. /FEA=mRNA /GEN=MAP3K7 /PROD=mitogen-activated protein kinase kinase kinase7 /DB_XREF=gi:4507360 /UG=Hs.7510 mitogen-activated protein kinase kinase kinase 7 /FL=gb:AB009356.1 gb:NM_003188.1 NM_003188 mitogen-activated protein kinase kinase kinase 7 MAP3K7 6885 NM_003188 /// NM_145331 /// NM_145332 /// NM_145333 /// XM_006715553 0000165 // MAPK cascade // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // inferred from direct assay /// 0000187 // activation of MAPK activity // inferred from direct assay /// 0000187 // activation of MAPK activity // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001841 // neural tube formation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002726 // positive regulation of T cell cytokine production // inferred from mutant phenotype /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from mutant phenotype /// 0007252 // I-kappaB phosphorylation // inferred from direct assay /// 0007254 // JNK cascade // inferred from direct assay /// 0007254 // JNK cascade // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // inferred from mutant phenotype /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043507 // positive regulation of JUN kinase activity // inferred from direct assay /// 0043507 // positive regulation of JUN kinase activity // inferred from mutant phenotype /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // non-traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050870 // positive regulation of T cell activation // inferred by curator /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // inferred from direct assay /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005671 // Ada2/Gcn5/Ada3 transcription activator complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008385 // IkappaB kinase complex // inferred from physical interaction /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004708 // MAP kinase kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0097110 // scaffold protein binding // inferred from direct assay 24.55 107.42 1.42 0.20 0.27 -4.58
206331_at 206331_at NM_005795 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005795.1 /DEF=Homo sapiens calcitonin receptor-like (CALCRL), mRNA. /FEA=mRNA /GEN=CALCRL /PROD=calcitonin receptor-like /DB_XREF=gi:5031620 /UG=Hs.152175 calcitonin receptor-like /FL=gb:L76380.1 gb:NM_005795.1 NM_005795 calcitonin receptor-like CALCRL 10203 NM_001271751 /// NM_005795 /// XM_005246231 /// XM_005246232 /// XM_005246234 0001525 // angiogenesis // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006816 // calcium ion transport // inferred from direct assay /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007187 // G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger // traceable author statement /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0015031 // protein transport // inferred from direct assay /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0031623 // receptor internalization // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0071329 // cellular response to sucrose stimulus // inferred from direct assay 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001605 // adrenomedullin receptor activity // inferred from direct assay /// 0001635 // calcitonin gene-related polypeptide receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004948 // calcitonin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from direct assay 38.98 330.91 1.42 0.20 0.27 -4.58
220264_s_at 220264_s_at NM_020960 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020960.1 /DEF=Homo sapiens KIAA1624 protein (KIAA1624), mRNA. /FEA=mRNA /GEN=KIAA1624 /PROD=KIAA1624 protein /DB_XREF=gi:13470087 /UG=Hs.6639 KIAA1624 protein /FL=gb:NM_020960.1 NM_020960 G protein-coupled receptor 107 GPR107 57720 NM_001136557 /// NM_001136558 /// NM_001287346 /// NM_020960 /// XM_006717196 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 17.65 28.60 1.42 0.20 0.27 -4.58
222104_x_at 222104_x_at AI569458 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI569458 /FEA=EST /DB_XREF=gi:4532832 /DB_XREF=est:tn87c02.x1 /CLONE=IMAGE:2176514 /UG=Hs.90304 general transcription factor IIH, polypeptide 3 (34kD subunit) /FL=gb:NM_001516.1 AI569458 general transcription factor IIH, polypeptide 3, 34kDa GTF2H3 2967 NM_001271866 /// NM_001271867 /// NM_001271868 /// NM_001516 /// XM_005253568 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006361 // transcription initiation from RNA polymerase I promoter // traceable author statement /// 0006362 // transcription elongation from RNA polymerase I promoter // traceable author statement /// 0006363 // termination of RNA polymerase I transcription // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006412 // translation // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0000439 // core TFIIH complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005675 // holo TFIIH complex // inferred from direct assay 0003684 // damaged DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred from direct assay /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction -18.40 71.38 -1.41 0.20 0.27 -4.58
219315_s_at 219315_s_at NM_024600 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024600.1 /DEF=Homo sapiens hypothetical protein FLJ20898 (FLJ20898), mRNA. /FEA=mRNA /GEN=FLJ20898 /PROD=hypothetical protein FLJ20898 /DB_XREF=gi:13375800 /UG=Hs.25549 hypothetical protein FLJ20898 /FL=gb:NM_024600.1 NM_024600 transmembrane protein 204 TMEM204 79652 NM_001256541 /// NM_024600 0001945 // lymph vessel development // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -22.18 141.84 -1.41 0.20 0.27 -4.58
203392_s_at 203392_s_at NM_001328 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001328.1 /DEF=Homo sapiens C-terminal binding protein 1 (CTBP1), mRNA. /FEA=mRNA /GEN=CTBP1 /PROD=C-terminal binding protein 1 /DB_XREF=gi:4557496 /UG=Hs.239737 C-terminal binding protein 1 /FL=gb:U37408.1 gb:AF091555.1 gb:NM_001328.1 NM_001328 C-terminal binding protein 1 CTBP1 1487 NM_001012614 /// NM_001328 /// XM_005272261 /// XM_005272262 /// XM_005272263 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0007030 // Golgi organization // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019079 // viral genome replication // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // inferred from mutant phenotype /// 0034401 // regulation of transcription by chromatin organization // inferred from mutant phenotype /// 0035067 // negative regulation of histone acetylation // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0090241 // negative regulation of histone H4 acetylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // traceable author statement /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from sequence or structural similarity /// 0070491 // repressing transcription factor binding // inferred from physical interaction 32.55 312.68 1.41 0.20 0.27 -4.58
200092_s_at 200092_s_at BF216701 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF216701 /FEA=EST /DB_XREF=gi:11110287 /DB_XREF=est:601884615F1 /CLONE=IMAGE:4103235 /UG=Hs.179779 ribosomal protein L37 BF216701 ribosomal protein L37 RPL37 6167 NM_000997 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // traceable author statement /// 0019843 // rRNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -204.30 2392.85 -1.41 0.20 0.27 -4.58
202654_x_at 202654_x_at NM_022826 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022826.1 /DEF=Homo sapiens hypothetical protein DKFZp586F1122 similar to axotrophin (DKFZP586F1122), mRNA. /FEA=mRNA /GEN=DKFZP586F1122 /PROD=hypothetical protein DKFZp586F1122 similar toaxotrophin /DB_XREF=gi:12383065 /UG=Hs.5306 hypothetical protein DKFZp586F1122 similar to axotrophin /FL=gb:NM_022826.1 NM_022826 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase MARCH7 64844 NM_001282805 /// NM_001282806 /// NM_001282807 /// NM_022826 /// XM_005246773 /// XM_005246774 /// XR_427106 0006909 // phagocytosis // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005902 // microvillus // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0030175 // filopodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -28.52 177.39 -1.41 0.20 0.27 -4.58
201153_s_at 201153_s_at NM_021038 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021038.1 /DEF=Homo sapiens muscleblind (Drosophila)-like (MBNL), mRNA. /FEA=mRNA /GEN=MBNL /PROD=muscleblind (Drosophila)-like /DB_XREF=gi:10518339 /UG=Hs.28578 muscleblind (Drosophila)-like /FL=gb:NM_021038.1 gb:AB007888.1 NM_021038 muscleblind-like splicing regulator 1 MBNL1 4154 NM_021038 /// NM_207292 /// NM_207293 /// NM_207294 /// NM_207295 /// NM_207296 /// NM_207297 /// XM_005247457 /// XM_005247458 /// XM_005247459 /// XM_005247460 /// XM_005247461 /// XM_005247462 /// XM_005247463 /// XM_005247464 /// XM_005247465 /// XM_005247466 /// XM_005247467 /// XM_005247468 /// XM_005247469 /// XM_005247470 /// XM_005247471 /// XM_005247472 /// XM_005247473 /// XM_005247474 /// XM_005247475 /// XM_005247476 /// XM_005247477 /// XM_006713639 /// XM_006713640 /// XM_006713641 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from direct assay /// 0030326 // embryonic limb morphogenesis // inferred from sequence or structural similarity /// 0043484 // regulation of RNA splicing // inferred from direct assay /// 0045445 // myoblast differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 98.95 783.73 1.41 0.20 0.27 -4.58
200904_at 200904_at X56841 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X56841.1 /DEF=H.sapiens HLA-E gene. /FEA=mRNA /GEN=HLA-E /PROD=HLA-E /DB_XREF=gi:433491 /UG=Hs.181392 major histocompatibility complex, class I, E /FL=gb:BC002578.1 gb:NM_005516.1 X56841 major histocompatibility complex, class I, E HLA-E 3133 NM_005516 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002476 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib // inferred from direct assay /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002480 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent // traceable author statement /// 0002717 // positive regulation of natural killer cell mediated immunity // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from direct assay /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0031901 // early endosome membrane // traceable author statement /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from direct assay /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay 33.38 146.19 1.41 0.20 0.27 -4.58
201029_s_at 201029_s_at NM_002414 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002414.1 /DEF=Homo sapiens antigen identified by monoclonal antibodies 12E7, F21 and O13 (MIC2), mRNA. /FEA=mRNA /GEN=MIC2 /PROD=antigen identified by monoclonal antibodies12E7, F21 and O13 /DB_XREF=gi:4505182 /UG=Hs.177543 antigen identified by monoclonal antibodies 12E7, F21 and O13 /FL=gb:BC002584.1 gb:BC003147.1 gb:M16279.1 gb:U82164.1 gb:NM_002414.1 NM_002414 CD99 molecule CD99 4267 NM_001122898 /// NM_001277710 /// NM_002414 /// XM_005274530 /// XM_005274532 /// XM_005274533 /// XM_005274534 /// XM_005274535 /// XM_005274794 /// XM_005274796 /// XM_005274797 /// XM_005274798 /// XM_005274799 /// XM_006724489 /// XM_006724490 /// XM_006724491 /// XM_006724870 /// XM_006724871 /// XM_006724872 0007155 // cell adhesion // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -73.78 1572.11 -1.41 0.20 0.27 -4.58
203224_at 203224_at BF340123 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF340123 /FEA=EST /DB_XREF=gi:11286585 /DB_XREF=est:602037283F1 /CLONE=IMAGE:4185212 /UG=Hs.37558 hypothetical protein FLJ11149 /FL=gb:NM_018339.1 BF340123 riboflavin kinase RFK 55312 NM_018339 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006771 // riboflavin metabolic process // traceable author statement /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0009231 // riboflavin biosynthetic process // non-traceable author statement /// 0009398 // FMN biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0033864 // positive regulation of NAD(P)H oxidase activity // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008531 // riboflavin kinase activity // non-traceable author statement /// 0008531 // riboflavin kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 19.90 129.50 1.41 0.20 0.27 -4.58
203325_s_at 203325_s_at AI130969 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI130969 /FEA=EST /DB_XREF=gi:3600985 /DB_XREF=est:qc15e01.x1 /CLONE=IMAGE:1709688 /UG=Hs.146428 collagen, type V, alpha 1 /FL=gb:M76729.1 gb:D90279.1 gb:NM_000093.1 AI130969 collagen, type V, alpha 1 COL5A1 1289 NM_000093 /// NM_001278074 0001568 // blood vessel development // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007411 // axon guidance // traceable author statement /// 0016477 // cell migration // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from mutant phenotype /// 0030199 // collagen fibril organization // non-traceable author statement /// 0030574 // collagen catabolic process // traceable author statement /// 0032964 // collagen biosynthetic process // inferred from mutant phenotype /// 0035313 // wound healing, spreading of epidermal cells // inferred from mutant phenotype /// 0035989 // tendon development // inferred from electronic annotation /// 0043206 // extracellular fibril organization // inferred from mutant phenotype /// 0043588 // skin development // inferred from mutant phenotype /// 0045112 // integrin biosynthetic process // inferred from mutant phenotype /// 0048592 // eye morphogenesis // inferred from mutant phenotype /// 0051128 // regulation of cellular component organization // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005588 // collagen type V trimer // inferred from mutant phenotype /// 0005604 // basement membrane // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from mutant phenotype /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // non-traceable author statement /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0043394 // proteoglycan binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // inferred from direct assay -28.95 222.60 -1.41 0.20 0.27 -4.58
219599_at 219599_at NM_018507 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018507.1 /DEF=Homo sapiens hypothetical protein PRO1843 (PRO1843), mRNA. /FEA=mRNA /GEN=PRO1843 /PROD=hypothetical protein PRO1843 /DB_XREF=gi:8924082 /UG=Hs.283330 hypothetical protein PRO1843 /FL=gb:AF119854.1 gb:NM_018507.1 NM_018507 eukaryotic translation initiation factor 4B EIF4B 1975 NM_001417 /// NM_018507 /// XM_005268709 /// XM_006719274 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016281 // eukaryotic translation initiation factor 4F complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -48.25 194.35 -1.41 0.20 0.27 -4.58
208445_s_at 208445_s_at NM_023005 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_023005.1 /DEF=Homo sapiens bromodomain adjacent to zinc finger domain, 1B (BAZ1B), mRNA. /FEA=mRNA /GEN=BAZ1B /PROD=bromodomain adjacent to zinc finger domain, 1B /DB_XREF=gi:12711667 /UG=Hs.194688 bromodomain adjacent to zinc finger domain, 1B /FL=gb:NM_023005.1 gb:AF072810.1 NM_023005 bromodomain adjacent to zinc finger domain, 1B BAZ1B 9031 NM_023005 /// NM_032408 /// XM_005250683 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016572 // histone phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0034725 // DNA replication-dependent nucleosome disassembly // inferred from mutant phenotype /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0048096 // chromatin-mediated maintenance of transcription // inferred from sequence or structural similarity /// 2000273 // positive regulation of receptor activity // inferred from electronic annotation 0000793 // condensed chromosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // inferred from electronic annotation /// 0043596 // nuclear replication fork // inferred from direct assay /// 0071778 // WINAC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from direct assay /// 0035173 // histone kinase activity // inferred from direct assay /// 0042393 // histone binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070577 // lysine-acetylated histone binding // inferred from direct assay /// 0071884 // vitamin D receptor activator activity // inferred from electronic annotation 27.82 98.36 1.41 0.20 0.27 -4.58
202678_at 202678_at NM_004492 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004492.1 /DEF=Homo sapiens general transcription factor IIA, 2 (12kD subunit) (GTF2A2), mRNA. /FEA=mRNA /GEN=GTF2A2 /PROD=general transcription factor IIA, 2 (12kDsubunit) /DB_XREF=gi:4758485 /UG=Hs.76362 general transcription factor IIA, 2 (12kD subunit) /FL=gb:BC000287.1 gb:BC001919.1 gb:U21242.1 gb:NM_004492.1 gb:U14193.1 NM_004492 general transcription factor IIA, 2, 12kDa GTF2A2 2958 NM_004492 /// XM_005254324 /// XM_005254325 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051123 // RNA polymerase II transcriptional preinitiation complex assembly // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005672 // transcription factor TFIIA complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0001103 // RNA polymerase II repressing transcription factor binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0017025 // TBP-class protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction 44.20 393.43 1.41 0.20 0.27 -4.58
203952_at 203952_at NM_007348 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007348.1 /DEF=Homo sapiens activating transcription factor 6 (ATF6), mRNA. /FEA=mRNA /GEN=ATF6 /PROD=activating transcription factor 6 /DB_XREF=gi:6671584 /UG=Hs.247433 activating transcription factor 6 /FL=gb:AF005887.1 gb:AB015856.1 gb:NM_007348.1 NM_007348 activating transcription factor 6 ATF6 22926 NM_007348 /// XM_006711224 /// XM_006711225 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006950 // response to stress // traceable author statement /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0006990 // positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005635 // nuclear envelope // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -66.77 148.89 -1.40 0.20 0.27 -4.58
201351_s_at 201351_s_at AF070656 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF070656.1 /DEF=Homo sapiens FtsH homolog mRNA, complete cds. /FEA=mRNA /PROD=FtsH homolog /DB_XREF=gi:4454687 /UG=Hs.206521 YME1 (S.cerevisiae)-like 1 /FL=gb:AF070656.1 gb:NM_014263.1 AF070656 YME1-like 1 ATPase YME1L1 10730 NM_001253866 /// NM_014263 /// NM_139312 /// NM_139313 0006508 // proteolysis // inferred from electronic annotation /// 0006515 // misfolded or incompletely synthesized protein catabolic process // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031295 // T cell costimulation // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042287 // MHC protein binding // non-traceable author statement /// 0042605 // peptide antigen binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -51.50 543.02 -1.40 0.20 0.27 -4.58
204640_s_at 204640_s_at NM_003563 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003563.1 /DEF=Homo sapiens speckle-type POZ protein (SPOP), mRNA. /FEA=mRNA /GEN=SPOP /PROD=speckle-type POZ protein /DB_XREF=gi:4507182 /UG=Hs.129951 speckle-type POZ protein /FL=gb:BC003385.1 gb:NM_003563.1 NM_003563 speckle-type POZ protein SPOP 8405 NM_001007226 /// NM_001007227 /// NM_001007228 /// NM_001007229 /// NM_001007230 /// NM_003563 /// XM_005257723 /// XM_005257724 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -25.80 240.68 -1.40 0.20 0.27 -4.58
208978_at 208978_at U36190 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U36190.1 /DEF=Human cysteine-rich protein 2 (hCRP2) mRNA, complete cds. /FEA=mRNA /GEN=hCRP2 /PROD=cysteine-rich protein 2 /DB_XREF=gi:1399027 /UG=Hs.70327 cysteine-rich protein 2 /FL=gb:D42123.1 gb:BC000434.1 gb:BC001931.1 gb:U36190.1 gb:NM_001312.1 U36190 cysteine-rich protein 2 CRIP2 1397 NM_001270837 /// NM_001270841 /// NM_001312 /// NR_073081 /// NR_073082 /// NR_073083 /// NR_073084 /// NR_073085 /// XR_429291 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation 0005938 // cell cortex // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -49.25 484.68 -1.40 0.20 0.27 -4.58
203675_at 203675_at NM_005013 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005013.1 /DEF=Homo sapiens nucleobindin 2 (NUCB2), mRNA. /FEA=mRNA /GEN=NUCB2 /PROD=nucleobindin 2 /DB_XREF=gi:4826869 /UG=Hs.3164 nucleobindin 2 /FL=gb:AF052642.1 gb:AF052643.1 gb:AF052644.1 gb:NM_005013.1 NM_005013 nucleobindin 2 NUCB2 4925 NM_005013 /// XM_005252941 /// XM_005252942 /// XM_005252943 /// XM_005252944 /// XM_005252945 /// XM_005252947 /// XM_005252948 /// XM_006718239 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 21.20 135.12 1.40 0.20 0.27 -4.58
206302_s_at 206302_s_at NM_019094 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019094.1 /DEF=Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 4 (NUDT4), mRNA. /FEA=mRNA /GEN=NUDT4 /PROD=nudix (nucleoside diphosphate linked moietyX)-type motif 4 /DB_XREF=gi:10800135 /UG=Hs.92381 nudix (nucleoside diphosphate linked moiety X)-type motif 4 /FL=gb:NM_019094.1 gb:AF191649.1 gb:AF191650.1 gb:AF191653.1 NM_019094 nudix (nucleoside diphosphate linked moiety X)-type motif 4 /// nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 /// nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 2 NUDT4 /// NUDT4P1 /// NUDT4P2 11163 /// 170688 /// 440672 NM_019094 /// NM_199040 /// NR_002212 /// NR_104005 /// XM_005268595 0008152 // metabolic process // inferred from electronic annotation /// 0009187 // cyclic nucleotide metabolic process // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement /// 0019935 // cyclic-nucleotide-mediated signaling // traceable author statement /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046831 // regulation of RNA export from nucleus // traceable author statement /// 0046907 // intracellular transport // traceable author statement 0005622 // intracellular // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030515 // snoRNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050072 // m7G(5')pppN diphosphatase activity // inferred from sequence or structural similarity /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // traceable author statement /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation 51.25 459.55 1.40 0.20 0.27 -4.58
202411_at 202411_at NM_005532 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005532.1 /DEF=Homo sapiens interferon, alpha-inducible protein 27 (IFI27), mRNA. /FEA=mRNA /GEN=IFI27 /PROD=interferon, alpha-inducible protein 27 /DB_XREF=gi:5031780 /UG=Hs.278613 interferon, alpha-inducible protein 27 /FL=gb:NM_005532.1 NM_005532 interferon, alpha-inducible protein 27 IFI27 3429 NM_001130080 /// NM_001288952 /// NM_001288954 /// NM_001288956 /// NM_001288957 /// NM_001288958 /// NM_001288959 /// NM_001288960 /// NM_001288995 /// NM_005532 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0097190 // apoptotic signaling pathway // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -79.05 428.68 -1.40 0.20 0.27 -4.58
215918_s_at 215918_s_at AA131826 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA131826 /FEA=EST /DB_XREF=gi:1693379 /DB_XREF=est:zl37f06.s1 /CLONE=IMAGE:504131 /UG=Hs.107164 spectrin, beta, non-erythrocytic 1 AA131826 spectrin, beta, non-erythrocytic 1 SPTBN1 6711 NM_003128 /// NM_178313 /// XM_005264517 /// XM_005264518 /// XM_006712087 0000281 // mitotic cytokinesis // inferred from mutant phenotype /// 0007009 // plasma membrane organization // inferred from mutant phenotype /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein import into nucleus // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0043001 // Golgi to plasma membrane protein transport // inferred from mutant phenotype /// 0051693 // actin filament capping // inferred from electronic annotation /// 0071709 // membrane assembly // inferred from mutant phenotype /// 0072661 // protein targeting to plasma membrane // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0014731 // spectrin-associated cytoskeleton // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030673 // axolemma // inferred from sequence or structural similarity /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0030506 // ankyrin binding // inferred from physical interaction /// 0030506 // ankyrin binding // non-traceable author statement /// 0032403 // protein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 17.85 35.67 1.40 0.20 0.28 -4.58
218753_at 218753_at NM_018053 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018053.1 /DEF=Homo sapiens hypothetical protein FLJ10307 (FLJ10307), mRNA. /FEA=mRNA /GEN=FLJ10307 /PROD=hypothetical protein FLJ10307 /DB_XREF=gi:8922341 /UG=Hs.55024 hypothetical protein FLJ10307 /FL=gb:BC003606.1 gb:NM_018053.1 NM_018053 XK, Kell blood group complex subunit-related family, member 8 XKR8 55113 NM_018053 0006915 // apoptotic process // inferred from electronic annotation /// 0043652 // engulfment of apoptotic cell // inferred from direct assay /// 0070782 // phosphatidylserine exposure on apoptotic cell surface // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -39.38 287.49 -1.40 0.20 0.28 -4.58
206074_s_at 206074_s_at NM_002131 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002131.1 /DEF=Homo sapiens high-mobility group (nonhistone chromosomal) protein isoforms I and Y (HMGIY), mRNA. /FEA=mRNA /GEN=HMGIY /PROD=high-mobility group (nonhistone chromosomal)protein isoforms I and Y /DB_XREF=gi:4504432 /UG=Hs.139800 high-mobility group (nonhistone chromosomal) protein isoforms I and Y /FL=gb:BC004924.1 gb:NM_002131.1 NM_002131 high mobility group AT-hook 1 HMGA1 3159 NM_002131 /// NM_145899 /// NM_145901 /// NM_145902 /// NM_145903 /// NM_145904 /// NM_145905 /// XM_005249061 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0006268 // DNA unwinding involved in DNA replication // non-traceable author statement /// 0006284 // base-excision repair // inferred from direct assay /// 0006337 // nucleosome disassembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006461 // protein complex assembly // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009615 // response to virus // inferred from expression pattern /// 0016032 // viral process // traceable author statement /// 0031936 // negative regulation of chromatin silencing // traceable author statement /// 0035986 // senescence-associated heterochromatin focus assembly // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0075713 // establishment of integrated proviral latency // traceable author statement /// 0090402 // oncogene-induced cell senescence // inferred from direct assay /// 2000774 // positive regulation of cellular senescence // inferred from mutant phenotype 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0035985 // senescence-associated heterochromatin focus // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003680 // AT DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from mutant phenotype /// 0042974 // retinoic acid receptor binding // inferred from direct assay /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046965 // retinoid X receptor binding // inferred from direct assay /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from direct assay 116.82 964.39 1.39 0.20 0.28 -4.58
211946_s_at 211946_s_at AL096857 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL096857.1 /DEF=Novel human mRNA from chromosome 1, which has similarities to BAT2 genes. /FEA=mRNA /PROD=hypothetical protein /DB_XREF=gi:5541862 /UG=Hs.69559 KIAA1096 protein AL096857 proline-rich coiled-coil 2C PRRC2C 23215 NM_015172 /// XM_005245015 /// XM_005245016 /// XM_005245017 /// XM_005245018 /// XM_005245019 /// XM_005245020 /// XM_005245022 /// XM_005245023 /// XM_005245024 /// XM_005245025 /// XM_005245026 /// XM_005245027 /// XM_005245028 /// XM_005245029 /// XM_005245030 /// XM_006711238 /// XM_006711239 0016020 // membrane // inferred from direct assay 0008022 // protein C-terminus binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 46.10 524.65 1.39 0.20 0.28 -4.58
210875_s_at 210875_s_at U12170 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U12170.1 /DEF=Human zinc finger homeodomain protein mRNA, complete cds. /FEA=mRNA /PROD=zinc finger homeodomain protein /DB_XREF=gi:529172 /UG=Hs.232068 transcription factor 8 (represses interleukin 2 expression) /FL=gb:U12170.1 U12170 uncharacterized LOC100996668 /// zinc finger E-box binding homeobox 1 LOC100996668 /// ZEB1 6935 /// 100996668 NM_001128128 /// NM_001174093 /// NM_001174094 /// NM_001174095 /// NM_001174096 /// NM_030751 /// NR_024285 /// NR_024286 /// NR_024287 /// XM_005252575 /// XM_005252576 /// XM_006717497 /// XM_006717498 /// XM_006717499 /// XR_158862 /// XR_159196 /// XR_171848 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006955 // immune response // traceable author statement /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010464 // regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0033081 // regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048513 // organ development // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048752 // semicircular canal morphogenesis // inferred from electronic annotation /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0090103 // cochlea morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity 61.73 166.29 1.39 0.21 0.28 -4.58
213939_s_at 213939_s_at AI871641 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI871641 /FEA=EST /DB_XREF=gi:5545690 /DB_XREF=est:we28f04.x1 /CLONE=IMAGE:2342431 /UG=Hs.306623 Homo sapiens cDNA FLJ12012 fis, clone HEMBB1001668 AI871641 RUN and FYVE domain containing 3 RUFY3 22902 NM_001037442 /// NM_001130709 /// NM_001291993 /// NM_001291994 /// NM_014961 /// XM_005265656 /// XM_005265657 /// XM_005265658 /// XM_005265659 /// XM_006714148 /// XM_006714149 /// XM_006714150 /// XR_427534 /// XR_427535 /// XR_427536 /// XR_427537 /// XR_427538 /// XR_427539 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from sequence or structural similarity 0030175 // filopodium // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation 18.35 27.12 1.39 0.21 0.28 -4.58
213318_s_at 213318_s_at BG028844 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG028844 /FEA=EST /DB_XREF=gi:12417939 /DB_XREF=est:602292337F1 /CLONE=IMAGE:4387280 /UG=Hs.274348 HLA-B associated transcript-3 BG028844 BCL2-associated athanogene 6 BAG6 7917 NM_001098534 /// NM_001199697 /// NM_001199698 /// NM_004639 /// NM_080702 /// NM_080703 /// XM_005249393 /// XM_005249396 /// XM_005272880 /// XM_005272883 /// XM_005275034 /// XM_005275037 /// XM_005275169 /// XM_005275172 /// XM_005275292 /// XM_005275295 /// XM_005275464 /// XM_005275468 /// XM_005275597 /// XM_005275601 /// XM_006715192 /// XM_006715193 /// XM_006715194 /// XM_006715195 /// XM_006715196 /// XM_006715197 /// XM_006715198 /// XM_006715199 /// XM_006715200 /// XM_006715201 /// XM_006715202 /// XM_006715203 /// XM_006725509 /// XM_006725510 /// XM_006725511 /// XM_006725512 /// XM_006725513 /// XM_006725514 /// XM_006725515 /// XM_006725516 /// XM_006725517 /// XM_006725518 /// XM_006725519 /// XM_006725520 /// XM_006725725 /// XM_006725726 /// XM_006725727 /// XM_006725728 /// XM_006725729 /// XM_006725730 /// XM_006725731 /// XM_006725732 /// XM_006725733 /// XM_006725734 /// XM_006725735 /// XM_006725736 /// XM_006725835 /// XM_006725836 /// XM_006725837 /// XM_006725838 /// XM_006725839 /// XM_006725840 /// XM_006725841 /// XM_006725842 /// XM_006725843 /// XM_006725844 /// XM_006725845 /// XM_006725846 /// XM_006725923 /// XM_006725924 /// XM_006725925 /// XM_006725926 /// XM_006725927 /// XM_006725928 /// XM_006725929 /// XM_006725930 /// XM_006725931 /// XM_006725932 /// XM_006725933 /// XM_006725934 /// XM_006726025 /// XM_006726026 /// XM_006726027 /// XM_006726028 /// XM_006726029 /// XM_006726030 /// XM_006726031 /// XM_006726032 /// XM_006726033 /// XM_006726034 /// XM_006726035 /// XM_006726036 /// XM_006726113 /// XM_006726114 /// XM_006726115 /// XM_006726116 /// XM_006726117 /// XM_006726118 /// XM_006726119 /// XM_006726120 /// XM_006726121 /// XM_006726122 /// XM_006726123 /// XM_006726124 0001822 // kidney development // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018393 // internal peptidyl-lysine acetylation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from mutant phenotype /// 0045861 // negative regulation of proteolysis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0071816 // tail-anchored membrane protein insertion into ER membrane // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0071818 // BAT3 complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity /// 0043022 // ribosome binding // inferred from direct assay /// 0070628 // proteasome binding // inferred from sequence or structural similarity -60.82 435.26 -1.39 0.21 0.28 -4.58
213047_x_at 213047_x_at AI278616 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI278616 /FEA=EST /DB_XREF=gi:3916850 /DB_XREF=est:qm47a06.x1 /CLONE=IMAGE:1891858 /UG=Hs.145279 SET translocation (myeloid leukemia-associated) AI278616 SET nuclear proto-oncogene /// SET-like protein SET /// SETSIP 6418 /// 646817 NM_001122821 /// NM_001248000 /// NM_001248001 /// NM_001287737 /// NM_003011 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006337 // nucleosome disassembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035067 // negative regulation of histone acetylation // traceable author statement /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0045446 // endothelial cell differentiation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0004864 // protein phosphatase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0042393 // histone binding // traceable author statement 85.12 887.36 1.39 0.21 0.28 -4.58
200049_at 200049_at NM_007067 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007067.1 /DEF=Homo sapiens histone acetyltransferase (HBOA), mRNA. /FEA=mRNA /GEN=HBOA /PROD=histone acetyltransferase /DB_XREF=gi:5901961 /UG=Hs.21907 histone acetyltransferase /FL=gb:AF074606.1 gb:AF140360.1 gb:NM_007067.1 NM_007067 K(lysine) acetyltransferase 7 KAT7 11143 NM_001199155 /// NM_001199156 /// NM_001199157 /// NM_001199158 /// NM_007067 0006260 // DNA replication // inferred from direct assay /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0043981 // histone H4-K5 acetylation // inferred from direct assay /// 0043982 // histone H4-K8 acetylation // inferred from direct assay /// 0043983 // histone H4-K12 acetylation // inferred from direct assay /// 0043984 // histone H4-K16 acetylation // inferred from direct assay 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -18.95 140.82 -1.39 0.21 0.28 -4.58
214327_x_at 214327_x_at AI888178 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI888178 /FEA=EST /DB_XREF=gi:5593342 /DB_XREF=est:wm40b09.x1 /CLONE=IMAGE:2438393 /UG=Hs.279860 tumor protein, translationally-controlled 1 AI888178 uncharacterized LOC101928826 /// tumor protein, translationally-controlled 1 LOC101928826 /// TPT1 7178 /// 101928826 NM_001286272 /// NM_001286273 /// NM_003295 /// XR_242670 /// XR_250536 /// XR_252641 0006816 // calcium ion transport // inferred by curator /// 0006874 // cellular calcium ion homeostasis // inferred by curator /// 0009615 // response to virus // inferred from expression pattern /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype /// 2000384 // negative regulation of ectoderm development // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005771 // multivesicular body // inferred from direct assay /// 0045298 // tubulin complex // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 488.15 2603.35 1.38 0.21 0.28 -4.58
203008_x_at 203008_x_at NM_005783 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005783.1 /DEF=Homo sapiens ATP binding protein associated with cell differentiation (APACD), mRNA. /FEA=mRNA /GEN=APACD /PROD=ATP binding protein associated with celldifferentiation /DB_XREF=gi:5031582 /UG=Hs.153884 ATP binding protein associated with cell differentiation /FL=gb:AB006679.1 gb:NM_005783.1 NM_005783 thioredoxin domain containing 9 TXNDC9 10190 NM_005783 0045454 // cell redox homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 72.85 498.52 1.38 0.21 0.28 -4.58
211944_at 211944_at BE729523 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE729523 /FEA=EST /DB_XREF=gi:10143515 /DB_XREF=est:601564896F1 /CLONE=IMAGE:3926279 /UG=Hs.69559 KIAA1096 protein BE729523 proline-rich coiled-coil 2C PRRC2C 23215 NM_015172 /// XM_005245015 /// XM_005245016 /// XM_005245017 /// XM_005245018 /// XM_005245019 /// XM_005245020 /// XM_005245022 /// XM_005245023 /// XM_005245024 /// XM_005245025 /// XM_005245026 /// XM_005245027 /// XM_005245028 /// XM_005245029 /// XM_005245030 /// XM_006711238 /// XM_006711239 0016020 // membrane // inferred from direct assay 0008022 // protein C-terminus binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -22.80 100.05 -1.38 0.21 0.28 -4.58
202728_s_at 202728_s_at AI986120 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI986120 /FEA=EST /DB_XREF=gi:5813397 /DB_XREF=est:wr80e09.x1 /CLONE=IMAGE:2494024 /UG=Hs.241257 latent transforming growth factor beta binding protein 1 /FL=gb:M34057.1 gb:NM_000627.1 AI986120 latent transforming growth factor beta binding protein 1 LTBP1 4052 NM_000627 /// NM_001166264 /// NM_001166265 /// NM_001166266 /// NM_206943 /// XM_005264315 /// XM_005264316 /// XM_005264317 /// XM_005264318 /// XM_005264319 /// XM_006712019 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // non-traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0035583 // sequestering of TGFbeta in extracellular matrix // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay 0005024 // transforming growth factor beta-activated receptor activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019838 // growth factor binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // inferred from physical interaction -28.70 144.85 -1.38 0.21 0.28 -4.58
221775_x_at 221775_x_at BG152979 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG152979 /FEA=EST /DB_XREF=gi:12665009 /DB_XREF=est:nah24c06.y1 /CLONE=IMAGE:4232050 /UG=Hs.99914 ribosomal protein L22 BG152979 ribosomal protein L22 RPL22 6146 NM_000983 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0046632 // alpha-beta T cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -303.68 2588.76 -1.38 0.21 0.28 -4.58
214020_x_at 214020_x_at BE138575 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE138575 /FEA=EST /DB_XREF=gi:8601075 /DB_XREF=est:xr77e12.x2 /CLONE=IMAGE:2766190 /UG=Hs.149846 integrin, beta 5 BE138575 integrin, beta 5 ITGB5 3693 NM_002213 /// XM_005247436 /// XM_006713630 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0008305 // integrin complex // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay /// 0045335 // phagocytic vesicle // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 44.60 211.40 1.38 0.21 0.28 -4.58
211963_s_at 211963_s_at AL516350 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL516350 /FEA=EST /DB_XREF=gi:12779843 /DB_XREF=est:AL516350 /CLONE=CS0DA005YD24 (3 prime) /UG=Hs.82425 actin related protein 23 complex, subunit 5 (16 kD) /FL=gb:AF017807.1 AL516350 actin related protein 2/3 complex, subunit 5, 16kDa ARPC5 10092 NM_001270439 /// NM_005717 0006928 // cellular component movement // traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0015629 // actin cytoskeleton // traceable author statement /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 88.27 965.79 1.38 0.21 0.28 -4.58
215452_x_at 215452_x_at AL031133 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031133 /DEF=Human DNA sequence from clone 281H8 on chromosome 6q25.1-25.3. Contains up to four novel genes, one with similarity to KIAA0323 and worm C30F12.1 and another with Ubiquitin-Like protein gene SMT3 (the latter in an intron of a novel gene). Contains... /FEA=mRNA_2 /DB_XREF=gi:3676189 /UG=Hs.113293 Human DNA sequence from clone 281H8 on chromosome 6q25.1-25.3. Contains up to four novel genes, one with similarity to KIAA0323 and worm C30F12.1 and another with Ubiquitin-Like protein gene SMT3 (the latter in an intron of a novel gene). Contains ESTs, S AL031133 small ubiquitin-like modifier 4 SUMO4 387082 NM_001002255 0016925 // protein sumoylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 60.00 242.35 1.37 0.21 0.28 -4.58
217771_at 217771_at NM_016548 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016548.1 /DEF=Homo sapiens golgi membrane protein GP73 (LOC51280), mRNA. /FEA=mRNA /GEN=LOC51280 /PROD=golgi membrane protein GP73 /DB_XREF=gi:7706084 /UG=Hs.182793 golgi membrane protein GP73 /FL=gb:BC001740.1 gb:AF236056.1 gb:NM_016548.1 NM_016548 golgi membrane protein 1 GOLM1 51280 NM_001099268 /// NM_016548 /// NM_177937 0006997 // nucleus organization // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 31.45 153.85 1.37 0.21 0.28 -4.58
212083_at 212083_at BG170659 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG170659 /FEA=EST /DB_XREF=gi:12677362 /DB_XREF=est:602323531F1 /CLONE=IMAGE:4426926 /UG=Hs.226138 Homo sapiens mRNA; cDNA DKFZp566H2446 (from clone DKFZp566H2446) BG170659 testis expressed 261 TEX261 113419 NM_144582 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 32.02 286.64 1.37 0.21 0.28 -4.58
204950_at 204950_at NM_014959 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014959.1 /DEF=Homo sapiens KIAA0955 protein (KIAA0955), mRNA. /FEA=mRNA /GEN=KIAA0955 /PROD=KIAA0955 protein /DB_XREF=gi:7662403 /UG=Hs.10031 KIAA0955 protein /FL=gb:AF322184.1 gb:AF331519.1 gb:AY026322.1 gb:AB023172.1 gb:NM_014959.1 NM_014959 caspase recruitment domain family, member 8 CARD8 22900 NM_001184900 /// NM_001184901 /// NM_001184902 /// NM_001184903 /// NM_001184904 /// NM_014959 /// NR_033678 /// NR_033679 /// NR_033680 /// XM_006723091 /// XM_006723092 /// XM_006723093 /// XM_006723094 /// XM_006723095 /// XM_006723096 /// XM_006723097 /// XM_006723098 /// XM_006723099 /// XM_006723100 /// XM_006723101 /// XM_006723102 /// XM_006723103 /// XM_006723104 /// XM_006723105 /// XM_006723106 /// XM_006723107 /// XM_006723108 /// XM_006723109 /// XM_006723110 /// XR_430193 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0072559 // NLRP3 inflammasome complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from direct assay /// 0032089 // NACHT domain binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay 34.75 231.95 1.37 0.21 0.28 -4.58
215338_s_at 215338_s_at AI688640 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI688640 /FEA=EST /DB_XREF=gi:4899934 /DB_XREF=est:wd40b07.x1 /CLONE=IMAGE:2330581 /UG=Hs.241493 natural killer-tumor recognition sequence AI688640 natural killer cell triggering receptor NKTR 4820 NM_001012651 /// NM_005385 /// XM_005265173 /// XM_005265174 /// XM_005265176 /// XM_005265178 /// XM_006713171 /// XM_006713172 /// XM_006713173 /// XM_006713174 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016018 // cyclosporin A binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 19.85 74.70 1.37 0.21 0.28 -4.58
203445_s_at 203445_s_at NM_005730 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005730.1 /DEF=Homo sapiens conserved gene amplified in osteosarcoma (OS4), mRNA. /FEA=mRNA /GEN=OS4 /PROD=conserved gene amplified in osteosarcoma /DB_XREF=gi:5031964 /UG=Hs.180669 conserved gene amplified in osteosarcoma /FL=gb:U81556.1 gb:NM_005730.1 NM_005730 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 CTDSP2 10106 NM_005730 /// XM_005268556 0006470 // protein dephosphorylation // inferred from direct assay /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008420 // CTD phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 32.62 448.31 1.37 0.21 0.28 -4.58
203011_at 203011_at NM_005536 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005536.2 /DEF=Homo sapiens inositol(myo)-1(or 4)-monophosphatase 1 (IMPA1), mRNA. /FEA=mRNA /GEN=IMPA1 /PROD=inositol(myo)-1(or 4)-monophosphatase 1 /DB_XREF=gi:8393607 /UG=Hs.171776 inositol(myo)-1(or 4)-monophosphatase 1 /FL=gb:AF042729.2 gb:NM_005536.2 NM_005536 inositol(myo)-1(or 4)-monophosphatase 1 IMPA1 3612 NM_001144878 /// NM_001144879 /// NM_005536 0006021 // inositol biosynthetic process // inferred from electronic annotation /// 0006661 // phosphatidylinositol biosynthetic process // inferred from mutant phenotype /// 0006796 // phosphate-containing compound metabolic process // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from mutant phenotype /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0046855 // inositol phosphate dephosphorylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008934 // inositol monophosphate 1-phosphatase activity // inferred from direct assay /// 0008934 // inositol monophosphate 1-phosphatase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052832 // inositol monophosphate 3-phosphatase activity // inferred from electronic annotation /// 0052833 // inositol monophosphate 4-phosphatase activity // inferred from electronic annotation /// 0052834 // inositol monophosphate phosphatase activity // inferred from electronic annotation 25.95 231.70 1.37 0.21 0.29 -4.58
200021_at 200021_at NM_005507 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005507.1 /DEF=Homo sapiens cofilin 1 (non-muscle) (CFL1), mRNA. /FEA=mRNA /GEN=CFL1 /PROD=cofilin 1 (non-muscle) /DB_XREF=gi:5031634 /UG=Hs.180370 cofilin 1 (non-muscle) /FL=gb:NM_005507.1 NM_005507 cofilin 1 (non-muscle) CFL1 1072 NM_005507 0000910 // cytokinesis // inferred from electronic annotation /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001842 // neural fold formation // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype /// 0030010 // establishment of cell polarity // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030042 // actin filament depolymerization // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030836 // positive regulation of actin filament depolymerization // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043200 // response to amino acid // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045792 // negative regulation of cell size // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -349.70 4228.70 -1.36 0.21 0.29 -4.58
209971_x_at 209971_x_at AI928526 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI928526 /FEA=EST /DB_XREF=gi:5664490 /DB_XREF=est:wp59a06.x1 /CLONE=IMAGE:2466034 /UG=Hs.258730 heme-regulated initiation factor 2-alpha kinase /FL=gb:AF116615.1 AI928526 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 AIMP2 7965 NM_006303 /// XM_005249847 /// XM_005249848 /// XM_005249850 /// XM_006715772 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009605 // response to external stimulus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0010999 // regulation of eIF2 alpha phosphorylation by heme // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0045993 // negative regulation of translational initiation by iron // non-traceable author statement /// 0046501 // protoporphyrinogen IX metabolic process // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046984 // regulation of hemoglobin biosynthetic process // inferred from electronic annotation /// 0046986 // negative regulation of hemoglobin biosynthetic process // inferred from electronic annotation /// 0046986 // negative regulation of hemoglobin biosynthetic process // inferred from sequence or structural similarity /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 27.40 329.10 1.36 0.21 0.29 -4.58
200847_s_at 200847_s_at NM_016127 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016127.1 /DEF=Homo sapiens HSPC035 protein (LOC51669), mRNA. /FEA=mRNA /GEN=LOC51669 /PROD=HSPC035 protein /DB_XREF=gi:7706384 /UG=Hs.279921 HSPC035 protein /FL=gb:AF100748.1 gb:AF078855.1 gb:NM_016127.1 NM_016127 store-operated calcium entry-associated regulatory factor SARAF 51669 NM_001284239 /// NM_016127 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // inferred from direct assay /// 2001256 // regulation of store-operated calcium entry // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015279 // store-operated calcium channel activity // inferred from direct assay -40.20 414.38 -1.36 0.21 0.29 -4.58
201302_at 201302_at NM_001153 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001153.2 /DEF=Homo sapiens annexin A4 (ANXA4), mRNA. /FEA=mRNA /GEN=ANXA4 /PROD=annexin IV /DB_XREF=gi:4809272 /UG=Hs.77840 annexin A4 /FL=gb:D78152.1 gb:BC000182.1 gb:M82809.1 gb:M19383.1 gb:NM_001153.2 NM_001153 annexin A4 ANXA4 307 NM_001153 /// XM_006712000 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // non-traceable author statement /// 0050819 // negative regulation of coagulation // inferred from electronic annotation /// 2000483 // negative regulation of interleukin-8 secretion // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0012506 // vesicle membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004859 // phospholipase inhibitor activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // non-traceable author statement /// 0042802 // identical protein binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from physical interaction 20.85 220.90 1.36 0.21 0.29 -4.58
218119_at 218119_at NM_006327 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006327.1 /DEF=Homo sapiens translocase of inner mitochondrial membrane 23 (yeast) homolog (TIM23), mRNA. /FEA=mRNA /GEN=TIM23 /PROD=translocase of inner mitochondrial membrane 23(yeast) homolog /DB_XREF=gi:5454121 /UG=Hs.283684 translocase of inner mitochondrial membrane 23 (yeast) homolog /FL=gb:AF030162.1 gb:NM_006327.1 NM_006327 translocase of inner mitochondrial membrane 23 homolog (yeast) /// translocase of inner mitochondrial membrane 23 homolog B (yeast) TIMM23 /// TIMM23B 100287932 /// 100652748 NM_001290117 /// NM_001290118 /// NM_006327 /// NR_073029 /// NR_073030 /// NR_110767 /// XM_005278340 /// XM_006710232 /// XM_006718099 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0071806 // protein transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from direct assay /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031305 // integral component of mitochondrial inner membrane // inferred from direct assay 0004649 // poly(ADP-ribose) glycohydrolase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -33.35 231.95 -1.36 0.21 0.29 -4.58
211999_at 211999_at Z48950 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z48950 /DEF=H.sapiens hH3.3B gene for histone H3.3 /FEA=mRNA /DB_XREF=gi:761715 /UG=Hs.180877 H3 histone, family 3B (H3.3B) /FL=gb:NM_005324.1 Z48950 H3 histone, family 3A /// H3 histone, family 3B (H3.3B) /// microRNA 4738 H3F3A /// H3F3B /// MIR4738 3020 /// 3021 /// 100616282 NM_002107 /// NM_005324 /// NR_039892 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -70.75 1239.67 -1.36 0.21 0.29 -4.58
201966_at 201966_at NM_004550 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004550.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD) (NADH-coenzyme Q reductase) (NDUFS2), mRNA. /FEA=mRNA /GEN=NDUFS2 /PROD=NADH dehydrogenase (ubiquinone) Fe-S protein 2(49kD) (NADH-coenzyme Q reductase) /DB_XREF=gi:4758785 /UG=Hs.173611 NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD) (NADH-coenzyme Q reductase) /FL=gb:BC001456.1 gb:BC000170.2 gb:AF050640.1 gb:AF013160.1 gb:NM_004550.1 NM_004550 NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) NDUFS2 4720 NM_001166159 /// NM_004550 /// XM_005245208 /// XM_005245209 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006979 // response to oxidative stress // inferred from direct assay /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // inferred from mutant phenotype /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0009055 // electron carrier activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NAD(P)H // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 22.35 490.23 1.36 0.21 0.29 -4.58
203781_at 203781_at NM_004891 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004891.1 /DEF=Homo sapiens chromosome 2 open reading frame 1 (C2ORF1), mRNA. /FEA=mRNA /GEN=C2ORF1 /PROD=chromosome 2 open reading frame 1 /DB_XREF=gi:4759047 /UG=Hs.14454 chromosome 2 open reading frame 1 /FL=gb:AF047440.1 gb:NM_004891.1 NM_004891 mitochondrial ribosomal protein L33 MRPL33 9553 NM_004891 /// NM_145330 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 125.05 392.68 1.36 0.22 0.29 -4.58
212165_at 212165_at AF070537 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF070537.1 /DEF=Homo sapiens clone 24606 mRNA sequence. /FEA=mRNA /DB_XREF=gi:3387894 /UG=Hs.17481 Homo sapiens clone 24606 mRNA sequence AF070537 transmembrane protein 183A /// transmembrane protein 183B TMEM183A /// TMEM183B 92703 /// 653659 NM_001079809 /// NM_138391 /// XM_005245612 /// XR_241106 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 27.40 164.57 1.36 0.22 0.29 -4.58
207785_s_at 207785_s_at NM_015874 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015874.1 /DEF=Homo sapiens H-2K binding factor-2 (LOC51580), mRNA. /FEA=mRNA /GEN=LOC51580 /PROD=H-2K binding factor-2 /DB_XREF=gi:7706215 /UG=Hs.327138 H-2K binding factor-2 /FL=gb:D14041.1 gb:NM_015874.1 NM_015874 recombination signal binding protein for immunoglobulin kappa J region RBPJ 3516 NM_005349 /// NM_015874 /// NM_203283 /// NM_203284 /// XM_005248161 /// XM_006713962 /// XM_006713963 /// XM_006713964 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002437 // inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003157 // endocardium development // inferred from electronic annotation /// 0003160 // endocardium morphogenesis // inferred from sequence or structural similarity /// 0003198 // epithelial to mesenchymal transition involved in endocardial cushion formation // inferred from sequence or structural similarity /// 0003214 // cardiac left ventricle morphogenesis // inferred from sequence or structural similarity /// 0003222 // ventricular trabecula myocardium morphogenesis // inferred from sequence or structural similarity /// 0003256 // regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation // inferred from sequence or structural similarity /// 0006310 // DNA recombination // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006959 // humoral immune response // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // traceable author statement /// 0007221 // positive regulation of transcription of Notch receptor target // inferred from direct assay /// 0007507 // heart development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009912 // auditory receptor cell fate commitment // inferred from electronic annotation /// 0009957 // epidermal cell fate specification // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030279 // negative regulation of ossification // inferred from sequence or structural similarity /// 0030513 // positive regulation of BMP signaling pathway // inferred from sequence or structural similarity /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035912 // dorsal aorta morphogenesis // inferred from sequence or structural similarity /// 0036302 // atrioventricular canal development // inferred from sequence or structural similarity /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048733 // sebaceous gland development // inferred from electronic annotation /// 0048820 // hair follicle maturation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060486 // Clara cell differentiation // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from sequence or structural similarity /// 0060844 // arterial endothelial cell fate commitment // inferred from electronic annotation /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0072554 // blood vessel lumenization // inferred from sequence or structural similarity /// 0072602 // interleukin-4 secretion // inferred from electronic annotation /// 0097101 // blood vessel endothelial cell fate specification // inferred from sequence or structural similarity /// 1901186 // positive regulation of ERBB signaling pathway // inferred from sequence or structural similarity /// 1901189 // positive regulation of ephrin receptor signaling pathway // inferred from sequence or structural similarity /// 2000138 // positive regulation of cell proliferation involved in heart morphogenesis // inferred from sequence or structural similarity 0002193 // MAML1-RBP-Jkappa- ICN1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000150 // recombinase activity // non-traceable author statement /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from electronic annotation /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0000982 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation -27.85 162.40 -1.36 0.22 0.29 -4.58
212548_s_at 212548_s_at BF515124 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF515124 /FEA=EST /DB_XREF=gi:11600303 /DB_XREF=est:UI-H-BW1-anv-f-02-0-UI.s1 /CLONE=IMAGE:3083666 /UG=Hs.169600 KIAA0826 protein BF515124 FRY-like FRYL 285527 NM_001039751 /// NM_015030 /// XM_005248082 /// XM_005248083 /// XM_005248084 /// XM_005248085 /// XM_005248086 /// XM_005248087 /// XM_005248088 /// XM_005248089 /// XM_005248090 /// XM_005248091 /// XM_005248093 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -33.25 279.32 -1.35 0.22 0.29 -4.58
212988_x_at 212988_x_at AL515810 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL515810 /FEA=EST /DB_XREF=gi:12779303 /DB_XREF=est:AL515810 /CLONE=CS0DA001YI24 (3 prime) /UG=Hs.14376 actin, gamma 1 AL515810 actin, beta /// actin, gamma 1 ACTB /// ACTG1 60 /// 71 NM_001101 /// NM_001199954 /// NM_001614 /// NR_037688 /// XM_006715764 /// XM_006722048 /// XM_006722049 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -536.23 4937.16 -1.35 0.22 0.29 -4.58
207826_s_at 207826_s_at NM_002167 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002167.1 /DEF=Homo sapiens inhibitor of DNA binding 3, dominant negative helix-loop-helix protein (ID3), mRNA. /FEA=mRNA /GEN=ID3 /PROD=inhibitor of DNA binding 3, dominant negativehelix-loop-helix protein /DB_XREF=gi:10835060 /UG=Hs.76884 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein /FL=gb:NM_002167.1 NM_002167 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein ID3 3399 NM_002167 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001656 // metanephros development // inferred from electronic annotation /// 0006275 // regulation of DNA replication // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030903 // notochord development // inferred from electronic annotation /// 0042476 // odontogenesis // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 46.60 228.15 1.35 0.22 0.29 -4.58
206050_s_at 206050_s_at NM_002939 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002939.1 /DEF=Homo sapiens ribonucleaseangiogenin inhibitor (RNH), mRNA. /FEA=mRNA /GEN=RNH /PROD=ribonucleaseangiogenin inhibitor /DB_XREF=gi:4506564 /UG=Hs.75108 ribonucleaseangiogenin inhibitor /FL=gb:M36717.1 gb:NM_002939.1 NM_002939 ribonuclease/angiogenin inhibitor 1 RNH1 6050 NM_002939 /// NM_203383 /// NM_203384 /// NM_203385 /// NM_203386 /// NM_203387 /// NM_203388 /// NM_203389 0006402 // mRNA catabolic process // non-traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0045765 // regulation of angiogenesis // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0032311 // angiogenin-PRI complex // inferred from physical interaction /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008428 // ribonuclease inhibitor activity // inferred from direct assay -75.52 438.69 -1.35 0.22 0.29 -4.58
213274_s_at 213274_s_at AA020826 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA020826 /FEA=EST /DB_XREF=gi:1484570 /DB_XREF=est:ze64b04.s1 /CLONE=IMAGE:363727 /UG=Hs.297939 cathepsin B AA020826 cathepsin B CTSB 1508 NM_001908 /// NM_147780 /// NM_147781 /// NM_147782 /// NM_147783 /// XM_006716244 /// XM_006716245 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006508 // proteolysis // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // inferred from direct assay /// 0030574 // collagen catabolic process // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0042981 // regulation of apoptotic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from direct assay /// 0097067 // cellular response to thyroid hormone stimulus // inferred from expression pattern 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005622 // intracellular // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0036021 // endolysosome lumen // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043394 // proteoglycan binding // inferred from physical interaction 30.07 435.26 1.35 0.22 0.29 -4.58
208778_s_at 208778_s_at BC000665 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000665.1 /DEF=Homo sapiens, t-complex 1, clone MGC:2234, mRNA, complete cds. /FEA=mRNA /PROD=t-complex 1 /DB_XREF=gi:12653758 /UG=Hs.4112 t-complex 1 /FL=gb:BC000665.1 BC000665 small nucleolar RNA, H/ACA box 29 /// t-complex 1 SNORA29 /// TCP1 6950 /// 677812 NM_001008897 /// NM_030752 /// NR_002965 0006457 // protein folding // traceable author statement /// 0007021 // tubulin complex assembly // non-traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0000242 // pericentriolar material // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 56.85 826.02 1.35 0.22 0.29 -4.58
219350_s_at 219350_s_at NM_019887 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019887.1 /DEF=Homo sapiens second mitochondria-derived activator of caspase (SMAC), mRNA. /FEA=mRNA /GEN=SMAC /PROD=second mitochondria-derived activator ofcaspase /DB_XREF=gi:9845296 /UG=Hs.169611 second mitochondria-derived activator of caspase /FL=gb:AF262240.1 gb:NM_019887.1 NM_019887 diablo, IAP-binding mitochondrial protein DIABLO 56616 NM_001278302 /// NM_001278303 /// NM_001278304 /// NM_001278342 /// NM_019887 /// NM_138929 /// NM_138930 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // traceable author statement /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation /// 0008635 // activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0009898 // cytoplasmic side of plasma membrane // inferred from sequence or structural similarity /// 0035631 // CD40 receptor complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction -54.97 326.21 -1.35 0.22 0.29 -4.58
211385_x_at 211385_x_at U28169 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U28169.1 /DEF=Human clone hast4v aryl sulfotransferase mRNA, complete cds. /FEA=mRNA /PROD=aryl sulfotransferase /DB_XREF=gi:881502 /UG=Hs.272462 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 /FL=gb:U28169.1 gb:U28170.1 U28169 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 SULT1A2 6799 NM_001054 /// NM_177528 /// XM_006721076 /// XM_006721077 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0009309 // amine biosynthetic process // traceable author statement /// 0018958 // phenol-containing compound metabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // traceable author statement /// 0051923 // sulfation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004062 // aryl sulfotransferase activity // inferred from direct assay /// 0008146 // sulfotransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0047894 // flavonol 3-sulfotransferase activity // inferred from direct assay -24.12 83.91 -1.35 0.22 0.29 -4.58
208866_at 208866_at BF510713 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF510713 /FEA=EST /DB_XREF=gi:11594011 /DB_XREF=est:UI-H-BI4-aoh-b-03-0-UI.s1 /CLONE=IMAGE:3084629 /UG=Hs.144477 hypothetical protein PRO2975 /FL=gb:AF119911.1 BF510713 casein kinase 1, alpha 1 CSNK1A1 1452 NM_001025105 /// NM_001271741 /// NM_001271742 /// NM_001892 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 41.37 127.31 1.35 0.22 0.29 -4.58
202593_s_at 202593_s_at NM_016641 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016641.1 /DEF=Homo sapiens membrane interacting protein of RGS16 (MIR16), mRNA. /FEA=mRNA /GEN=MIR16 /PROD=membrane interacting protein of RGS16 /DB_XREF=gi:7706616 /UG=Hs.107014 membrane interacting protein of RGS16 /FL=gb:AF212862.1 gb:NM_016641.1 NM_016641 glycerophosphodiester phosphodiesterase 1 GDE1 51573 NM_016641 /// XM_005255355 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047395 // glycerophosphoinositol glycerophosphodiesterase activity // inferred from electronic annotation 30.60 155.90 1.35 0.22 0.29 -4.58
35685_at 35685_at AL031228 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. Z14000:H.sapiens RING1 gene /cds=(75,1208) /gb=Z14000 /gi=296063 /ug=Hs.35384 /len=1529 AL031228 ring finger protein 1 RING1 6015 NM_002931 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016568 // chromatin modification // non-traceable author statement /// 0016574 // histone ubiquitination // inferred from electronic annotation /// 0035518 // histone H2A monoubiquitination // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0001739 // sex chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016604 // nuclear body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from direct assay /// 0035102 // PRC1 complex // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 19.57 168.26 1.34 0.22 0.29 -4.58
201352_at 201352_at NM_014263 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014263.1 /DEF=Homo sapiens YME1 (S.cerevisiae)-like 1 (YME1L1), mRNA. /FEA=mRNA /GEN=YME1L1 /PROD=YME1 (S.cerevisiae)-like 1 /DB_XREF=gi:7657688 /UG=Hs.206521 YME1 (S.cerevisiae)-like 1 /FL=gb:AF070656.1 gb:NM_014263.1 NM_014263 YME1-like 1 ATPase YME1L1 10730 NM_001253866 /// NM_014263 /// NM_139312 /// NM_139313 0006508 // proteolysis // inferred from electronic annotation /// 0006515 // misfolded or incompletely synthesized protein catabolic process // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031295 // T cell costimulation // traceable author statement /// 0050776 // regulation of immune response // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042287 // MHC protein binding // non-traceable author statement /// 0042605 // peptide antigen binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 25.28 530.39 1.34 0.22 0.29 -4.58
201814_at 201814_at AI300084 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI300084 /FEA=EST /DB_XREF=gi:3959430 /DB_XREF=est:qn59f02.x1 /CLONE=IMAGE:1902555 /UG=Hs.115740 KIAA0210 gene product /FL=gb:D86965.1 gb:NM_014744.1 AI300084 TBC1 domain family, member 5 TBC1D5 9779 NM_001134380 /// NM_001134381 /// NM_014744 /// XM_005265611 /// XM_005265612 /// XM_005265613 /// XM_005265614 /// XM_005265615 /// XM_005265616 /// XM_006713429 /// XM_006713430 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0030904 // retromer complex // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 19.90 192.00 1.34 0.22 0.29 -4.58
205961_s_at 205961_s_at NM_004682 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004682.1 /DEF=Homo sapiens PC4 and SFRS1 interacting protein 2 (PSIP2), mRNA. /FEA=mRNA /GEN=PSIP2 /PROD=PC4 and SFRS1 interacting protein 2 /DB_XREF=gi:4758869 /UG=Hs.306179 PC4 and SFRS1 interacting protein 2 /FL=gb:AF098483.1 gb:NM_004682.1 NM_004682 PC4 and SFRS1 interacting protein 1 PSIP1 11168 NM_001128217 /// NM_021144 /// NM_033222 /// XM_005251355 /// XM_005251356 /// XM_005251357 /// XM_005251358 0000395 // mRNA 5'-splice site recognition // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0075713 // establishment of integrated proviral latency // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005720 // nuclear heterochromatin // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0034399 // nuclear periphery // inferred from direct assay /// 0035327 // transcriptionally active chromatin // inferred from sequence or structural similarity 0001105 // RNA polymerase II transcription coactivator activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0033613 // activating transcription factor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0097100 // supercoiled DNA binding // inferred from sequence or structural similarity -27.80 97.35 -1.34 0.22 0.29 -4.58
210125_s_at 210125_s_at AF044773 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF044773.1 /DEF=Homo sapiens breakpoint cluster region protein 1 (BCRG1) mRNA, complete cds. /FEA=mRNA /GEN=BCRG1 /PROD=breakpoint cluster region protein 1 /DB_XREF=gi:3002950 /UG=Hs.268763 Breakpoint cluster region protein, uterine leiomyoma, 1; barrier to autointegration factor /FL=gb:AF044773.1 AF044773 barrier to autointegration factor 1 BANF1 8815 NM_001143985 /// NM_003860 0000278 // mitotic cell cycle // traceable author statement /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0009615 // response to virus // traceable author statement /// 0015074 // DNA integration // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0075713 // establishment of integrated proviral latency // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 81.10 533.90 1.34 0.22 0.29 -4.58
201745_at 201745_at NM_002822 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002822.1 /DEF=Homo sapiens protein tyrosine kinase 9 (PTK9), mRNA. /FEA=mRNA /GEN=PTK9 /PROD=protein tyrosine kinase 9 /DB_XREF=gi:4506274 /UG=Hs.82643 protein tyrosine kinase 9 /FL=gb:NM_002822.1 gb:U02680.1 NM_002822 twinfilin actin-binding protein 1 TWF1 5756 NM_001242397 /// NM_002822 /// NM_198974 /// NR_073472 /// NR_073473 0030837 // negative regulation of actin filament polymerization // inferred from sequence or structural similarity /// 0042989 // sequestering of actin monomers // inferred from sequence or structural similarity /// 0043538 // regulation of actin phosphorylation // inferred from direct assay /// 0051016 // barbed-end actin filament capping // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0030016 // myofibril // inferred from sequence or structural similarity /// 0030175 // filopodium // inferred from sequence or structural similarity /// 0032587 // ruffle membrane // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0003785 // actin monomer binding // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from direct assay /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from sequence or structural similarity -29.65 288.85 -1.34 0.22 0.29 -4.58
201243_s_at 201243_s_at NM_001677 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001677.1 /DEF=Homo sapiens ATPase, Na+K+ transporting, beta 1 polypeptide (ATP1B1), mRNA. /FEA=mRNA /GEN=ATP1B1 /PROD=ATPase, Na+K+ transporting, beta 1 polypeptide /DB_XREF=gi:4502276 /UG=Hs.78629 ATPase, Na+K+ transporting, beta 1 polypeptide /FL=gb:BC000006.1 gb:NM_001677.1 NM_001677 ATPase, Na+/K+ transporting, beta 1 polypeptide ATP1B1 481 NM_001001787 /// NM_001677 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030001 // metal ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0035725 // sodium ion transmembrane transport // inferred from electronic annotation /// 0035725 // sodium ion transmembrane transport // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0023026 // MHC class II protein complex binding // inferred from direct assay -99.22 578.69 -1.34 0.22 0.29 -4.58
211982_x_at 211982_x_at AL546600 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL546600 /FEA=EST /DB_XREF=gi:12879872 /DB_XREF=est:AL546600 /CLONE=CS0DI029YA23 (3 prime) /UG=Hs.70500 KIAA0370 protein AL546600 exportin 6 XPO6 23214 NM_001270940 /// NM_015171 /// XM_005255195 /// XM_005255197 /// XM_005255198 /// XM_005255199 /// XM_005255200 0006611 // protein export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred by curator /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from direct assay -26.00 326.93 -1.34 0.22 0.29 -4.58
212533_at 212533_at X62048 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X62048.1 /DEF=H.sapiens Wee1 hu gene. /FEA=mRNA /GEN=Wee1 Hu /DB_XREF=gi:499071 /UG=Hs.75188 wee1+ (S. pombe) homolog /FL=gb:NM_003390.1 gb:U10564.1 X62048 WEE1 G2 checkpoint kinase WEE1 7465 NM_001143976 /// NM_003390 /// XM_005253118 /// XM_005253119 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030010 // establishment of cell polarity // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // traceable author statement 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 27.68 129.34 1.34 0.22 0.29 -4.58
218377_s_at 218377_s_at NM_016940 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016940.1 /DEF=Homo sapiens chromosome 21 open reading frame 6 (C21ORF6), mRNA. /FEA=mRNA /GEN=C21ORF6 /PROD=chromosome 21 open reading frame 6 /DB_XREF=gi:8393017 /UG=Hs.34136 chromosome 21 open reading frame 6 /FL=gb:AF212232.1 gb:NM_016940.1 NM_016940 RWD domain containing 2B RWDD2B 10069 NM_016940 /// XM_006723952 0005515 // protein binding // inferred from electronic annotation -27.30 135.90 -1.34 0.22 0.30 -4.58
214323_s_at 214323_s_at N36842 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N36842 /FEA=EST /DB_XREF=gi:1157984 /DB_XREF=est:yy35g03.s1 /CLONE=IMAGE:273268 /UG=Hs.274412 similar to yeast Upf3, variant A N36842 UPF3 regulator of nonsense transcripts homolog A (yeast) UPF3A 65110 NM_023011 /// NM_080687 /// XM_005266200 /// XM_005266201 /// XM_005266202 /// XM_006719991 /// XR_429283 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from direct assay /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // non-traceable author statement /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0035145 // exon-exon junction complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005487 // nucleocytoplasmic transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 19.97 199.11 1.34 0.22 0.30 -4.58
201550_x_at 201550_x_at NM_001614 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001614.2 /DEF=Homo sapiens actin, gamma 1 (ACTG1), mRNA. /FEA=mRNA /GEN=ACTG1 /PROD=actin, gamma 1 propeptide /DB_XREF=gi:11038618 /UG=Hs.14376 actin, gamma 1 /FL=gb:NM_001614.2 gb:BC000292.1 NM_001614 actin, beta /// actin, gamma 1 ACTB /// ACTG1 60 /// 71 NM_001101 /// NM_001199954 /// NM_001614 /// NR_037688 /// XM_006715764 /// XM_006722048 /// XM_006722049 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -781.30 5606.55 -1.34 0.22 0.30 -4.58
207318_s_at 207318_s_at AJ297710 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ297710.1 /DEF=Homo sapiens mRNA for CDC2L5 protein kinase, (CDC2L5 gene), isoform 2. /FEA=mRNA /GEN=CDC2L5 /PROD=CDC2L5 protein kinase /DB_XREF=gi:10443223 /UG=Hs.59498 cell division cycle 2-like 5 (cholinesterase-related cell division controller) /FL=gb:M80629.1 gb:NM_003718.1 AJ297710 cyclin-dependent kinase 13 CDK13 8621 NM_003718 /// NM_031267 0000380 // alternative mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000380 // alternative mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007088 // regulation of mitosis // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from mutant phenotype /// 0070816 // phosphorylation of RNA polymerase II C-terminal domain // inferred from direct assay 0002945 // cyclin K-CDK13 complex // inferred from physical interaction /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0019908 // nuclear cyclin-dependent protein kinase holoenzyme complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -32.02 201.84 -1.33 0.22 0.30 -4.58
215690_x_at 215690_x_at AL157437 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL157437.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434E1512 (from clone DKFZp434E1512); partial cds. /FEA=mRNA /GEN=DKFZp434E1512 /PROD=hypothetical protein /DB_XREF=gi:7018511 /UG=Hs.4742 anchor attachment protein 1 (Gaa1p, yeast) homolog AL157437 glycosylphosphatidylinositol anchor attachment 1 GPAA1 8733 NM_003801 0006461 // protein complex assembly // non-traceable author statement /// 0006501 // C-terminal protein lipidation // traceable author statement /// 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0006621 // protein retention in ER lumen // non-traceable author statement /// 0016255 // attachment of GPI anchor to protein // non-traceable author statement /// 0016255 // attachment of GPI anchor to protein // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042765 // GPI-anchor transamidase complex // traceable author statement 0003923 // GPI-anchor transamidase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0015631 // tubulin binding // non-traceable author statement /// 0034235 // GPI anchor binding // inferred from mutant phenotype -33.35 215.70 -1.33 0.22 0.30 -4.58
210208_x_at 210208_x_at BC003133 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003133.1 /DEF=Homo sapiens, Similar to HLA-B associated transcript-3, clone MGC:3619, mRNA, complete cds. /FEA=mRNA /PROD=Similar to HLA-B associated transcript-3 /DB_XREF=gi:13111924 /UG=Hs.274348 HLA-B associated transcript-3 /FL=gb:BC003133.1 BC003133 BCL2-associated athanogene 6 BAG6 7917 NM_001098534 /// NM_001199697 /// NM_001199698 /// NM_004639 /// NM_080702 /// NM_080703 /// XM_005249393 /// XM_005249396 /// XM_005272880 /// XM_005272883 /// XM_005275034 /// XM_005275037 /// XM_005275169 /// XM_005275172 /// XM_005275292 /// XM_005275295 /// XM_005275464 /// XM_005275468 /// XM_005275597 /// XM_005275601 /// XM_006715192 /// XM_006715193 /// XM_006715194 /// XM_006715195 /// XM_006715196 /// XM_006715197 /// XM_006715198 /// XM_006715199 /// XM_006715200 /// XM_006715201 /// XM_006715202 /// XM_006715203 /// XM_006725509 /// XM_006725510 /// XM_006725511 /// XM_006725512 /// XM_006725513 /// XM_006725514 /// XM_006725515 /// XM_006725516 /// XM_006725517 /// XM_006725518 /// XM_006725519 /// XM_006725520 /// XM_006725725 /// XM_006725726 /// XM_006725727 /// XM_006725728 /// XM_006725729 /// XM_006725730 /// XM_006725731 /// XM_006725732 /// XM_006725733 /// XM_006725734 /// XM_006725735 /// XM_006725736 /// XM_006725835 /// XM_006725836 /// XM_006725837 /// XM_006725838 /// XM_006725839 /// XM_006725840 /// XM_006725841 /// XM_006725842 /// XM_006725843 /// XM_006725844 /// XM_006725845 /// XM_006725846 /// XM_006725923 /// XM_006725924 /// XM_006725925 /// XM_006725926 /// XM_006725927 /// XM_006725928 /// XM_006725929 /// XM_006725930 /// XM_006725931 /// XM_006725932 /// XM_006725933 /// XM_006725934 /// XM_006726025 /// XM_006726026 /// XM_006726027 /// XM_006726028 /// XM_006726029 /// XM_006726030 /// XM_006726031 /// XM_006726032 /// XM_006726033 /// XM_006726034 /// XM_006726035 /// XM_006726036 /// XM_006726113 /// XM_006726114 /// XM_006726115 /// XM_006726116 /// XM_006726117 /// XM_006726118 /// XM_006726119 /// XM_006726120 /// XM_006726121 /// XM_006726122 /// XM_006726123 /// XM_006726124 0001822 // kidney development // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018393 // internal peptidyl-lysine acetylation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from mutant phenotype /// 0045861 // negative regulation of proteolysis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0071816 // tail-anchored membrane protein insertion into ER membrane // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0071818 // BAT3 complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity /// 0043022 // ribosome binding // inferred from direct assay /// 0070628 // proteasome binding // inferred from sequence or structural similarity -49.77 349.56 -1.33 0.22 0.30 -4.58
200072_s_at 200072_s_at AF061832 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF061832.1 /DEF=Homo sapiens M4 protein deletion mutant mRNA, complete cds. /FEA=mRNA /PROD=M4 protein deletion mutant /DB_XREF=gi:3126877 /UG=Hs.79024 heterogeneous nuclear ribonucleoprotein M /FL=gb:AF061832.1 AF061832 heterogeneous nuclear ribonucleoprotein M HNRNPM 4670 NM_001297418 /// NM_005968 /// NM_031203 /// XM_005272478 /// XM_005272479 /// XM_005272480 /// XM_005272481 /// XM_005272482 /// XM_005272483 0000380 // alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0042382 // paraspeckles // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -133.28 821.21 -1.33 0.22 0.30 -4.58
221952_x_at 221952_x_at AB037814 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB037814.1 /DEF=Homo sapiens mRNA for KIAA1393 protein, partial cds. /FEA=mRNA /GEN=KIAA1393 /PROD=KIAA1393 protein /DB_XREF=gi:7243166 /UG=Hs.33317 KIAA1393 protein AB037814 tRNA methyltransferase 5 TRMT5 57570 NM_020810 /// XM_005267916 0008033 // tRNA processing // inferred from electronic annotation /// 0030488 // tRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0009019 // tRNA (guanine-N1-)-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0052906 // tRNA (guanine(37)-N(1))-methyltransferase activity // inferred from electronic annotation 113.35 902.33 1.33 0.22 0.30 -4.58
213306_at 213306_at AA917899 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA917899 /FEA=EST /DB_XREF=gi:3057789 /DB_XREF=est:ol76e05.s1 /CLONE=IMAGE:1535552 /UG=Hs.169378 multiple PDZ domain protein AA917899 multiple PDZ domain protein MPDZ 8777 NM_001261406 /// NM_001261407 /// NM_003829 /// XM_005251622 /// XM_005251623 /// XM_006716885 /// XM_006716886 /// XM_006716887 /// XM_006716888 /// XM_006716889 /// XM_006716890 /// XM_006716891 /// XM_006716892 0007155 // cell adhesion // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016327 // apicolateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction 19.65 105.17 1.33 0.22 0.30 -4.58
200671_s_at 200671_s_at N92501 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N92501 /FEA=EST /DB_XREF=gi:1264810 /DB_XREF=est:zb28a07.s1 /CLONE=IMAGE:304884 /UG=Hs.107164 spectrin, beta, non-erythrocytic 1 /FL=gb:M96803.1 gb:NM_003128.1 N92501 spectrin, beta, non-erythrocytic 1 SPTBN1 6711 NM_003128 /// NM_178313 /// XM_005264517 /// XM_005264518 /// XM_006712087 0000281 // mitotic cytokinesis // inferred from mutant phenotype /// 0007009 // plasma membrane organization // inferred from mutant phenotype /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein import into nucleus // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0043001 // Golgi to plasma membrane protein transport // inferred from mutant phenotype /// 0051693 // actin filament capping // inferred from electronic annotation /// 0071709 // membrane assembly // inferred from mutant phenotype /// 0072661 // protein targeting to plasma membrane // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0014731 // spectrin-associated cytoskeleton // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030673 // axolemma // inferred from sequence or structural similarity /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0030506 // ankyrin binding // inferred from physical interaction /// 0030506 // ankyrin binding // non-traceable author statement /// 0032403 // protein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -29.35 102.92 -1.33 0.22 0.30 -4.58
202827_s_at 202827_s_at AU149305 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU149305 /FEA=EST /DB_XREF=gi:11010826 /DB_XREF=est:AU149305 /CLONE=NT2RM4002036 /UG=Hs.2399 matrix metalloproteinase 14 (membrane-inserted) /FL=gb:U41078.1 gb:NM_004995.2 AU149305 matrix metallopeptidase 14 (membrane-inserted) MMP14 4323 NM_004995 0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030574 // collagen catabolic process // traceable author statement /// 0031638 // zymogen activation // inferred from electronic annotation /// 0043615 // astrocyte cell migration // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 62.92 221.71 1.32 0.22 0.30 -4.58
208877_at 208877_at W74494 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W74494 /FEA=EST /DB_XREF=gi:1384781 /DB_XREF=est:zd75f10.s1 /CLONE=IMAGE:346507 /UG=Hs.284275 Homo sapiens PAK2 mRNA, complete cds /FL=gb:AF092132.1 W74494 p21 protein (Cdc42/Rac)-activated kinase 2 PAK2 5062 NM_002577 0000278 // mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0031295 // T cell costimulation // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001271 // negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030296 // protein tyrosine kinase activator activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction 21.62 250.44 1.32 0.23 0.30 -4.58
207051_at 207051_at NM_005495 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005495.1 /DEF=Homo sapiens solute carrier family 17 (sodium phosphate), member 4 (SLC17A4), mRNA. /FEA=mRNA /GEN=SLC17A4 /PROD=solute carrier family 17 (sodium phosphate),member 4 /DB_XREF=gi:4885440 /UG=Hs.128827 solute carrier family 17 (sodium phosphate), member 4 /FL=gb:AB020527.1 gb:NM_005495.1 NM_005495 solute carrier family 17, member 4 SLC17A4 10050 NM_001286121 /// NM_005495 /// XM_006714946 0006796 // phosphate-containing compound metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0035435 // phosphate ion transmembrane transport // traceable author statement /// 0035725 // sodium ion transmembrane transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005436 // sodium:phosphate symporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 17.95 41.80 1.32 0.23 0.30 -4.58
214239_x_at 214239_x_at AI560455 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI560455 /FEA=EST /DB_XREF=gi:4510796 /DB_XREF=est:tn11b01.x1 /CLONE=IMAGE:2167273 /UG=Hs.184669 zinc finger protein 144 (Mel-18) AI560455 polycomb group ring finger 2 PCGF2 7703 NM_007144 /// XM_005257640 /// XM_005257641 /// XM_005257642 /// XM_006722071 /// XM_006725342 /// XM_006725343 /// XM_006725344 /// XM_006725345 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0001739 // sex chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0016604 // nuclear body // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from direct assay /// 0035102 // PRC1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 35.90 168.80 1.32 0.23 0.30 -4.58
204970_s_at 204970_s_at NM_002359 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002359.1 /DEF=Homo sapiens v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein G (MAFG), mRNA. /FEA=mRNA /GEN=MAFG /PROD=v-maf musculoaponeurotic fibrosarcoma (avian)oncogene family, protein G /DB_XREF=gi:4505072 /UG=Hs.252229 v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein G /FL=gb:AF059195.1 gb:NM_002359.1 NM_002359 v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog G MAFG 4097 NM_002359 /// NM_032711 /// XM_006722282 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030534 // adult behavior // inferred from electronic annotation /// 0030641 // regulation of cellular pH // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 23.12 98.44 1.32 0.23 0.30 -4.58
213074_at 213074_at BG545769 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG545769 /FEA=EST /DB_XREF=gi:13544434 /DB_XREF=est:602573042F1 /CLONE=IMAGE:4701250 /UG=Hs.9927 Homo sapiens mRNA; cDNA DKFZp564D156 (from clone DKFZp564D156) BG545769 pleckstrin homology domain interacting protein PHIP 55023 NM_017934 /// XM_005248729 0001932 // regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // non-traceable author statement /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0045840 // positive regulation of mitosis // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005158 // insulin receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay 22.10 139.62 1.32 0.23 0.30 -4.58
203692_s_at 203692_s_at AI640363 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI640363 /FEA=EST /DB_XREF=gi:4703472 /DB_XREF=est:wa17d03.x1 /CLONE=IMAGE:2298341 /UG=Hs.1189 E2F transcription factor 3 /FL=gb:NM_001949.2 AI640363 E2F transcription factor 3 E2F3 1871 NM_001243076 /// NM_001949 /// XM_005248865 /// XM_005248866 /// XM_005248868 0000085 // mitotic G2 phase // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0001047 // core promoter binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -22.98 81.89 -1.32 0.23 0.30 -4.58
200792_at 200792_at NM_001469 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001469.1 /DEF=Homo sapiens thyroid autoantigen 70kD (Ku antigen) (G22P1), mRNA. /FEA=mRNA /GEN=G22P1 /PROD=thyroid autoantigen 70kD (Ku antigen) /DB_XREF=gi:4503840 /UG=Hs.197345 thyroid autoantigen 70kD (Ku antigen) /FL=gb:J04611.1 gb:M32865.1 gb:J04607.1 gb:NM_001469.1 NM_001469 X-ray repair complementing defective repair in Chinese hamster cells 6 XRCC6 2547 NM_001288976 /// NM_001288977 /// NM_001288978 /// NM_001469 0000723 // telomere maintenance // traceable author statement /// 0006266 // DNA ligation // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from mutant phenotype /// 0006303 // double-strand break repair via nonhomologous end joining // traceable author statement /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0033151 // V(D)J recombination // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0071475 // cellular hyperosmotic salinity response // inferred from electronic annotation /// 0071481 // cellular response to X-ray // inferred from electronic annotation /// 0075713 // establishment of integrated proviral latency // traceable author statement 0000783 // nuclear telomere cap complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation /// 0043564 // Ku70:Ku80 complex // inferred from direct assay /// 0070419 // nonhomologous end joining complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author statement /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003691 // double-stranded telomeric DNA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0042162 // telomeric DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from mutant phenotype -94.10 1082.67 -1.32 0.23 0.30 -4.58
201138_s_at 201138_s_at BG532929 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG532929 /FEA=EST /DB_XREF=gi:13524468 /DB_XREF=est:602580582F1 /CLONE=IMAGE:4718180 /UG=Hs.83715 Sjogren syndrome antigen B (autoantigen La) /FL=gb:NM_003142.1 gb:BC001289.1 gb:J04205.1 BG532929 Sjogren syndrome antigen B (autoantigen La) SSB 6741 NM_001294145 /// NM_003142 /// XM_005246811 0006396 // RNA processing // inferred from electronic annotation /// 0006400 // tRNA modification // traceable author statement /// 0008334 // histone mRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000049 // tRNA binding // traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 25.80 182.82 1.32 0.23 0.30 -4.58
200825_s_at 200825_s_at NM_006389 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006389.2 /DEF=Homo sapiens oxygen regulated protein (150kD) (ORP150), mRNA. /FEA=mRNA /GEN=ORP150 /PROD=oxygen regulated protein precursor /DB_XREF=gi:13699861 /UG=Hs.277704 oxygen regulated protein (150kD) /FL=gb:NM_006389.2 gb:U65785.1 NM_006389 hypoxia up-regulated 1 HYOU1 10525 NM_001130991 /// NM_006389 /// XM_005271390 /// XM_005271392 /// XM_005271393 /// XM_005271394 0002931 // response to ischemia // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 54.05 881.67 1.32 0.23 0.30 -4.58
218366_x_at 218366_x_at NM_022734 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022734.1 /DEF=Homo sapiens hypothetical protein FLJ20859 (FLJ20859), mRNA. /FEA=mRNA /GEN=FLJ20859 /PROD=hypothetical protein FLJ20859 /DB_XREF=gi:12232388 /UG=Hs.6311 hypothetical protein FLJ20859 /FL=gb:NM_022734.1 NM_022734 methyltransferase like 17 METTL17 64745 NM_001029991 /// NM_001029992 /// NM_022734 /// XM_006720235 /// XM_006720236 /// XM_006720237 0006412 // translation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 34.28 122.81 1.32 0.23 0.30 -4.58
213002_at 213002_at AA770596 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA770596 /FEA=EST /DB_XREF=gi:2821834 /DB_XREF=est:oe54a06.s1 /CLONE=IMAGE:1415410 /UG=Hs.75607 myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L) AA770596 myristoylated alanine-rich protein kinase C substrate MARCKS 4082 NM_002356 0006112 // energy reserve metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005813 // centrosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // traceable author statement -87.50 366.40 -1.31 0.23 0.30 -4.58
203676_at 203676_at NM_002076 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002076.1 /DEF=Homo sapiens glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID) (GNS), mRNA. /FEA=mRNA /GEN=GNS /PROD=glucosamine (N-acetyl)-6-sulfatase precursor /DB_XREF=gi:4504060 /UG=Hs.321070 glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID) /FL=gb:NM_002076.1 NM_002076 glucosamine (N-acetyl)-6-sulfatase GNS 2799 NM_002076 0005975 // carbohydrate metabolic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0042340 // keratan sulfate catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005764 // lysosome // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -40.52 145.29 -1.31 0.23 0.30 -4.58
212875_s_at 212875_s_at AP001745 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AP001745 /DEF=Homo sapiens genomic DNA, chromosome 21q, section 89105 /FEA=mRNA_3 /DB_XREF=gi:7768737 /UG=Hs.16007 chromosome 21 open reading frame 25 AP001745 C2 calcium-dependent domain containing 2 C2CD2 25966 NM_015500 /// NM_199050 /// XM_005261106 /// XM_005261107 /// XM_005261109 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation -16.23 140.39 -1.31 0.23 0.30 -4.58
211933_s_at 211933_s_at AA528233 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA528233 /FEA=EST /DB_XREF=gi:2270302 /DB_XREF=est:nh92b01.s1 /CLONE=IMAGE:965929 /UG=Hs.249247 heterogeneous nuclear protein similar to rat helix destabilizing protein AA528233 heterogeneous nuclear ribonucleoprotein A3 /// heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 HNRNPA3 /// HNRNPA3P1 10151 /// 220988 NM_194247 /// NR_002726 /// XM_005246380 /// XM_005246381 /// XM_005246382 /// XM_006712365 /// XR_427076 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 74.58 596.76 1.31 0.23 0.31 -4.58
211934_x_at 211934_x_at W87689 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W87689 /FEA=EST /DB_XREF=gi:1401814 /DB_XREF=est:zh68c04.s1 /CLONE=IMAGE:417222 /UG=Hs.76847 KIAA0088 protein /FL=gb:NM_014610.1 W87689 glucosidase, alpha; neutral AB GANAB 23193 NM_001278192 /// NM_001278193 /// NM_001278194 /// NM_014610 /// NM_198334 /// NM_198335 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0017177 // glucosidase II complex // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0033919 // glucan 1,3-alpha-glucosidase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -108.75 668.73 -1.31 0.23 0.31 -4.58
212273_x_at 212273_x_at AI591100 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI591100 /FEA=EST /DB_XREF=gi:4600148 /DB_XREF=est:tw91c03.x1 /CLONE=IMAGE:2267044 /UG=Hs.113368 neuroendocrine secretory protein 55 AI591100 GNAS complex locus GNAS 2778 NM_000516 /// NM_001077488 /// NM_001077489 /// NM_001077490 /// NM_016592 /// NM_080425 /// NM_080426 /// NR_003259 /// XM_005260401 /// XM_005260402 /// XM_006723781 /// XM_006723782 0001501 // skeletal system development // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006171 // cAMP biosynthetic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007190 // activation of adenylate cyclase activity // traceable author statement /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // not recorded /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007565 // female pregnancy // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007606 // sensory perception of chemical stimulus // not recorded /// 0007608 // sensory perception of smell // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0009306 // protein secretion // non-traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040032 // post-embryonic body morphogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0046907 // intracellular transport // non-traceable author statement /// 0048589 // developmental growth // inferred from direct assay /// 0048589 // developmental growth // inferred from mutant phenotype /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050890 // cognition // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0051216 // cartilage development // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060348 // bone development // inferred from direct assay /// 0060348 // bone development // inferred from mutant phenotype /// 0060789 // hair follicle placode formation // inferred from direct assay /// 0060789 // hair follicle placode formation // inferred from mutant phenotype /// 0070527 // platelet aggregation // inferred from direct assay /// 0070527 // platelet aggregation // inferred from mutant phenotype /// 0071107 // response to parathyroid hormone // inferred from mutant phenotype /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071514 // genetic imprinting // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity /// 0071880 // adenylate cyclase-activating adrenergic receptor signaling pathway // inferred from direct assay 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0004016 // adenylate cyclase activity // traceable author statement /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from direct assay /// 0005159 // insulin-like growth factor receptor binding // /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // /// 0031748 // D1 dopamine receptor binding // /// 0031852 // mu-type opioid receptor binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051430 // corticotropin-releasing hormone receptor 1 binding // -340.95 2191.10 -1.31 0.23 0.31 -4.58
209284_s_at 209284_s_at AI922509 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI922509 /FEA=EST /DB_XREF=gi:5658473 /DB_XREF=est:wh13g11.x1 /CLONE=IMAGE:2380676 /UG=Hs.23440 KIAA1105 protein /FL=gb:AF180425.2 AI922509 family with sequence similarity 208, member A FAM208A 23272 NM_001112736 /// NM_015224 /// XM_005264999 /// XM_006713077 /// XM_006713078 0044822 // poly(A) RNA binding // inferred from direct assay -25.75 107.70 -1.31 0.23 0.31 -4.58
213594_x_at 213594_x_at AU130523 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU130523 /FEA=EST /DB_XREF=gi:10990877 /DB_XREF=est:AU130523 /CLONE=NT2RP3000977 /UG=Hs.3530 TLS-associated serine-arginine protein 2 AU130523 serine/arginine-rich splicing factor 10 SRSF10 10772 NM_001191005 /// NM_001191006 /// NM_001191007 /// NM_001191009 /// NM_006625 /// NM_054016 /// NR_034035 /// XM_006710298 /// XM_006710299 /// XM_006710300 /// XM_006710301 0000244 // spliceosomal tri-snRNP complex assembly // non-traceable author statement /// 0000375 // RNA splicing, via transesterification reactions // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006376 // mRNA splice site selection // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // non-traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016482 // cytoplasmic transport // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // non-traceable author statement /// 0051082 // unfolded protein binding // non-traceable author statement 21.60 160.20 1.31 0.23 0.31 -4.58
217466_x_at 217466_x_at L48784 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:L48784 /DEF=050 Homo sapiens cDNA /FEA=mRNA /DB_XREF=gi:1066715 /UG=Hs.182426 ribosomal protein S2 L48784 ribosomal protein S2 /// small nucleolar RNA, H/ACA box 64 RPS2 /// SNORA64 6187 /// 26784 NM_002952 /// NR_002326 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051347 // positive regulation of transferase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 372.73 1533.34 1.30 0.23 0.31 -4.58
200012_x_at 200012_x_at NM_000982 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000982.1 /DEF=Homo sapiens ribosomal protein L21 (gene or pseudogene) (RPL21), mRNA. /FEA=mRNA /GEN=RPL21 /PROD=ribosomal protein L21 (gene or pseudogene) /DB_XREF=gi:4506610 /UG=Hs.184108 ribosomal protein L21 /FL=gb:BC001603.1 gb:NM_000982.1 gb:U14967.1 gb:U25789.1 NM_000982 ribosomal protein L21 /// ribosomal protein L21 pseudogene 28 /// small nucleolar RNA, H/ACA box 27 /// small nucleolar RNA, C/D box 102 RPL21 /// RPL21P28 /// SNORA27 /// SNORD102 6144 /// 26771 /// 619499 /// 100131205 NM_000982 /// NR_002574 /// NR_002575 /// NR_026911 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -202.35 2681.90 -1.30 0.23 0.31 -4.58
213356_x_at 213356_x_at AL568186 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL568186 /FEA=EST /DB_XREF=gi:12922280 /DB_XREF=est:AL568186 /CLONE=CS0DF035YA23 (3 prime) /UG=Hs.249495 heterogeneous nuclear ribonucleoprotein A1 AL568186 heterogeneous nuclear ribonucleoprotein A1 /// heterogeneous nuclear ribonucleoprotein A1-like 2 /// heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 /// heterogeneous nuclear ribonucleoprotein A1 pseudogene 33 HNRNPA1 /// HNRNPA1L2 /// HNRNPA1P10 /// HNRNPA1P33 3178 /// 144983 /// 664709 /// 728643 NM_001011724 /// NM_001011725 /// NM_002136 /// NM_031157 /// NR_002944 /// NR_003277 /// XM_005268826 /// XR_245923 /// XR_245924 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006405 // RNA export from nucleus // inferred by curator /// 0006810 // transport // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051168 // nuclear export // inferred from direct assay /// 0051170 // nuclear import // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -292.55 3012.95 -1.30 0.23 0.31 -4.58
219293_s_at 219293_s_at NM_013341 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013341.1 /DEF=Homo sapiens hypothetical protein (PTD004), mRNA. /FEA=mRNA /GEN=PTD004 /PROD=hypothetical protein /DB_XREF=gi:9558756 /UG=Hs.86347 hypothetical protein /FL=gb:AF078859.1 gb:AF078868.1 gb:AF116703.1 gb:NM_013341.1 NM_013341 Obg-like ATPase 1 OLA1 29789 NM_001011708 /// NM_013341 0006200 // ATP catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0015684 // ferrous iron transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from electronic annotation /// 0043023 // ribosomal large subunit binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -37.98 604.89 -1.30 0.23 0.31 -4.58
212758_s_at 212758_s_at AI373166 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI373166 /FEA=EST /DB_XREF=gi:4153032 /DB_XREF=est:qz13b01.x1 /CLONE=IMAGE:2021353 /UG=Hs.232068 transcription factor 8 (represses interleukin 2 expression) AI373166 uncharacterized LOC100996668 /// zinc finger E-box binding homeobox 1 LOC100996668 /// ZEB1 6935 /// 100996668 NM_001128128 /// NM_001174093 /// NM_001174094 /// NM_001174095 /// NM_001174096 /// NM_030751 /// NR_024285 /// NR_024286 /// NR_024287 /// XM_005252575 /// XM_005252576 /// XM_006717497 /// XM_006717498 /// XM_006717499 /// XR_158862 /// XR_159196 /// XR_171848 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006955 // immune response // traceable author statement /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010464 // regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0033081 // regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048513 // organ development // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048752 // semicircular canal morphogenesis // inferred from electronic annotation /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0090103 // cochlea morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity -41.78 183.41 -1.30 0.23 0.31 -4.58
209190_s_at 209190_s_at AF051782 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF051782.1 /DEF=Homo sapiens diaphanous 1 (HDIA1) mRNA, complete cds. /FEA=mRNA /GEN=HDIA1 /PROD=diaphanous 1 /DB_XREF=gi:2947237 /UG=Hs.26584 diaphanous (Drosophila, homolog) 1 /FL=gb:AF051782.1 gb:NM_005219.1 AF051782 diaphanous-related formin 1 DIAPH1 1729 NM_001079812 /// NM_005219 /// XM_005268384 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030041 // actin filament polymerization // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0035372 // protein localization to microtubule // inferred from mutant phenotype /// 0051279 // regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0071420 // cellular response to histamine // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0072686 // mitotic spindle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005102 // receptor binding // non-traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005522 // profilin binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 28.57 186.39 1.30 0.23 0.31 -4.58
209676_at 209676_at J03225 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:J03225.1 /DEF=Human lipoprotein-associated coagulation inhibitor mRNA, complete cds. /FEA=mRNA /GEN=TFPI /DB_XREF=gi:180545 /UG=Hs.170279 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) /FL=gb:J03225.1 gb:NM_006287.2 J03225 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) TFPI 7035 NM_001032281 /// NM_006287 /// XM_005246818 /// XM_005246819 /// XM_005246820 /// XM_006712720 0007596 // blood coagulation // traceable author statement /// 0007598 // blood coagulation, extrinsic pathway // traceable author statement /// 0007599 // hemostasis // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -75.50 307.40 -1.30 0.23 0.31 -4.58
205129_at 205129_at NM_006993 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006993.1 /DEF=Homo sapiens nucleophosminnucleoplasmin 3 (NPM3), mRNA. /FEA=mRNA /GEN=NPM3 /PROD=nucleophosminnucleoplasmin 3 /DB_XREF=gi:6857817 /UG=Hs.90691 nucleophosminnucleoplasmin 3 /FL=gb:AF081280.1 gb:NM_006993.1 NM_006993 nucleophosmin/nucleoplasmin 3 NPM3 10360 NM_006993 0006364 // rRNA processing // inferred from electronic annotation /// 0009303 // rRNA transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 26.30 150.53 1.30 0.23 0.31 -4.58
206464_at 206464_at NM_001721 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001721.1 /DEF=Homo sapiens BMX non-receptor tyrosine kinase (BMX), mRNA. /FEA=mRNA /GEN=BMX /PROD=BMX non-receptor tyrosine kinase /DB_XREF=gi:4502434 /UG=Hs.27372 BMX non-receptor tyrosine kinase /FL=gb:AF045459.1 gb:NM_001721.1 NM_001721 BMX non-receptor tyrosine kinase BMX 660 NM_001721 /// NM_203281 /// XM_006724510 0006468 // protein phosphorylation // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007498 // mesoderm development // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0032587 // ruffle membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from direct assay /// 0004871 // signal transducer activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -68.58 521.06 -1.30 0.23 0.31 -4.58
209329_x_at 209329_x_at BC000587 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000587.1 /DEF=Homo sapiens, clone MGC:2198, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:2198) /DB_XREF=gi:12653618 /UG=Hs.227152 mannan-binding lectin serine protease 1 (C4C2 activating component of Ra-reactive factor) /FL=gb:BC000587.1 BC000587 HIG1 hypoxia inducible domain family, member 2A HIGD2A 192286 NM_138820 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation -29.65 442.82 -1.30 0.23 0.31 -4.58
222101_s_at 222101_s_at BF222893 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF222893 /FEA=EST /DB_XREF=gi:11130070 /DB_XREF=est:7q24f08.x1 /CLONE=IMAGE:3699231 /UG=Hs.9658 hypothetical protein FLJ11790 BF222893 dachsous cadherin-related 1 DCHS1 8642 NM_003737 /// NM_024542 /// XM_005253207 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from sequence or structural similarity /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement /// 0022008 // neurogenesis // inferred from sequence or structural similarity /// 0035329 // hippo signaling // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 28.15 184.05 1.29 0.23 0.31 -4.58
202718_at 202718_at NM_000597 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000597.1 /DEF=Homo sapiens insulin-like growth factor binding protein 2 (36kD) (IGFBP2), mRNA. /FEA=mRNA /GEN=IGFBP2 /PROD=insulin-like growth factor binding protein 2(36kD) /DB_XREF=gi:10835156 /UG=Hs.162 insulin-like growth factor binding protein 2 (36kD) /FL=gb:NM_000597.1 gb:BC004312.1 gb:M35410.1 NM_000597 insulin-like growth factor binding protein 2, 36kDa IGFBP2 3485 NM_000597 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0010226 // response to lithium ion // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // inferred by curator /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048545 // response to steroid hormone // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from direct assay /// 0031995 // insulin-like growth factor II binding // inferred from sequence or structural similarity 31.63 205.21 1.29 0.24 0.31 -4.58
209282_at 209282_at AF309082 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF309082.1 /DEF=Homo sapiens protein kinase D2 mRNA, complete cds. /FEA=mRNA /PROD=protein kinase D2 /DB_XREF=gi:12659006 /UG=Hs.91146 protein kinase D2 /FL=gb:AF309082.1 gb:AF151021.1 gb:NM_016457.1 AF309082 protein kinase D2 PRKD2 25865 NM_001079880 /// NM_001079881 /// NM_001079882 /// NM_016457 /// XM_005258716 0001525 // angiogenesis // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from genetic interaction /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008219 // cell death // inferred from mutant phenotype /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0032743 // positive regulation of interleukin-2 production // inferred from sequence or structural similarity /// 0032757 // positive regulation of interleukin-8 production // inferred from mutant phenotype /// 0032793 // positive regulation of CREB transcription factor activity // inferred from genetic interaction /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from genetic interaction /// 0035556 // intracellular signal transduction // inferred from genetic interaction /// 0035556 // intracellular signal transduction // inferred from mutant phenotype /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from genetic interaction /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from mutant phenotype /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from genetic interaction /// 0038033 // positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from genetic interaction /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from mutant phenotype /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from genetic interaction /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // traceable author statement /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // inferred from direct assay /// 0050862 // positive regulation of T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0061154 // endothelial tube morphogenesis // traceable author statement /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 1901727 // positive regulation of histone deacetylase activity // inferred from genetic interaction /// 1902533 // positive regulation of intracellular signal transduction // inferred from mutant phenotype /// 2000573 // positive regulation of DNA biosynthetic process // inferred from sequence or structural similarity /// 2001028 // positive regulation of endothelial cell chemotaxis // inferred from mutant phenotype 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // non-traceable author statement /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -27.85 136.38 -1.29 0.24 0.31 -4.58
222065_s_at 222065_s_at AI830227 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI830227 /FEA=EST /DB_XREF=gi:5450887 /DB_XREF=est:wj78g07.x1 /CLONE=IMAGE:2408988 /UG=Hs.83849 flightless I (Drosophila) homolog AI830227 flightless I homolog (Drosophila) FLII 2314 NM_001256264 /// NM_001256265 /// NM_002018 /// XM_005256555 /// XM_005256556 /// XM_005256558 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -19.68 154.41 -1.29 0.24 0.31 -4.58
217815_at 217815_at NM_007192 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007192.1 /DEF=Homo sapiens chromatin-specific transcription elongation factor, 140 kDa subunit (FACTP140), mRNA. /FEA=mRNA /GEN=FACTP140 /PROD=chromatin-specific transcription elongationfactor, 140 kDa subunit /DB_XREF=gi:6005756 /UG=Hs.14963 chromatin-specific transcription elongation factor, 140 kDa subunit /FL=gb:AF152961.1 gb:NM_007192.1 NM_007192 suppressor of Ty 16 homolog (S. cerevisiae) SUPT16H 11198 NM_007192 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006337 // nucleosome disassembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0032786 // positive regulation of DNA-templated transcription, elongation // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 54.48 378.06 1.29 0.24 0.31 -4.58
218561_s_at 218561_s_at NM_020408 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020408.1 /DEF=Homo sapiens CGI-203 protein (CGI-203), mRNA. /FEA=mRNA /GEN=CGI-203 /PROD=CGI-203 protein /DB_XREF=gi:9966892 /UG=Hs.184860 CGI-203 protein /FL=gb:AF285118.1 gb:NM_020408.1 NM_020408 LYR motif containing 4 LYRM4 57128 NM_001164840 /// NM_001164841 /// NM_020408 /// NR_104417 /// NR_104418 /// XM_005249237 /// XM_005249239 /// XM_006715151 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement 18.57 171.96 1.29 0.24 0.31 -4.58
202789_at 202789_at AL022394 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL022394 /DEF=Human DNA sequence from clone RP3-511B24 on chromosome 20q11.2-12. Contains the 3 end of the TOP1 gene for topoisomerase (DNA) I, the PLCG1 gene for phospholipase C gamma 1, gene KIAA0395 for a possible homeobox protein, a 60S Ribosomal Protein L... /FEA=mRNA_1 /DB_XREF=gi:11345540 /UG=Hs.268177 phospholipase C, gamma 1 (formerly subtype 148) /FL=gb:M34667.1 gb:NM_002660.1 AL022394 phospholipase C, gamma 1 PLCG1 5335 NM_002660 /// NM_182811 /// XM_005260438 /// XR_244143 0000186 // activation of MAPKK activity // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0019722 // calcium-mediated signaling // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from direct assay /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from mutant phenotype 0001726 // ruffle // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay 0004435 // phosphatidylinositol phospholipase C activity // inferred from direct assay /// 0004435 // phosphatidylinositol phospholipase C activity // traceable author statement /// 0004629 // phospholipase C activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // non-traceable author statement /// 0005168 // neurotrophin TRKA receptor binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation /// 0035254 // glutamate receptor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 25.10 126.40 1.29 0.24 0.31 -4.58
219968_at 219968_at NM_016089 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016089.1 /DEF=Homo sapiens KRAB-zinc finger protein SZF1-1 (SZF1), mRNA. /FEA=mRNA /GEN=SZF1 /PROD=KRAB-zinc finger protein SZF1-1 /DB_XREF=gi:7706726 /UG=Hs.19585 KRAB-zinc finger protein SZF1-1 /FL=gb:AF114816.1 gb:NM_016089.1 NM_016089 zinc finger protein 589 ZNF589 51385 NM_016089 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 20.55 58.50 1.29 0.24 0.31 -4.58
210815_s_at 210815_s_at U17473 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U17473.1 /DEF=Human calcitonin-like receptor mRNA, complete cds. /FEA=mRNA /PROD=calcitonin-like receptor /DB_XREF=gi:662328 /UG=Hs.152175 calcitonin receptor-like /FL=gb:U17473.1 U17473 calcitonin receptor-like CALCRL 10203 NM_001271751 /// NM_005795 /// XM_005246231 /// XM_005246232 /// XM_005246234 0001525 // angiogenesis // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006816 // calcium ion transport // inferred from direct assay /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007187 // G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger // traceable author statement /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0015031 // protein transport // inferred from direct assay /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0031623 // receptor internalization // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0071329 // cellular response to sucrose stimulus // inferred from direct assay 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001605 // adrenomedullin receptor activity // inferred from direct assay /// 0001635 // calcitonin gene-related polypeptide receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004948 // calcitonin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from direct assay -37.70 273.57 -1.29 0.24 0.31 -4.58
202707_at 202707_at NM_000373 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000373.1 /DEF=Homo sapiens uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5-decarboxylase) (UMPS), mRNA. /FEA=mRNA /GEN=UMPS /PROD=uridine monophosphate synthetase (orotatephosphoribosyl transferase andorotidine-5-decarboxylase) /DB_XREF=gi:4507834 /UG=Hs.2057 uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5-decarboxylase) /FL=gb:BC000364.1 gb:D86227.1 gb:D86228.1 gb:D86230.1 gb:J03626.1 gb:NM_000373.1 NM_000373 uridine monophosphate synthetase UMPS 7372 NM_000373 /// NR_033434 /// NR_033437 0006206 // pyrimidine nucleobase metabolic process // traceable author statement /// 0006207 // 'de novo' pyrimidine nucleobase biosynthetic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006222 // UMP biosynthetic process // inferred from direct assay /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0044205 // 'de novo' UMP biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046134 // pyrimidine nucleoside biosynthetic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004588 // orotate phosphoribosyltransferase activity // inferred from direct assay /// 0004588 // orotate phosphoribosyltransferase activity // traceable author statement /// 0004590 // orotidine-5'-phosphate decarboxylase activity // inferred from direct assay /// 0004590 // orotidine-5'-phosphate decarboxylase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 17.27 32.36 1.29 0.24 0.31 -4.58
201116_s_at 201116_s_at AI922855 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI922855 /FEA=EST /DB_XREF=gi:5658819 /DB_XREF=est:wo14h05.x1 /CLONE=IMAGE:2455353 /UG=Hs.75360 carboxypeptidase E /FL=gb:NM_001873.1 AI922855 carboxypeptidase E CPE 1363 NM_001873 0003214 // cardiac left ventricle morphogenesis // inferred from mutant phenotype /// 0006464 // cellular protein modification process // non-traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // non-traceable author statement /// 0008152 // metabolic process // traceable author statement /// 0030070 // insulin processing // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0072657 // protein localization to membrane // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0030667 // secretory granule membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004180 // carboxypeptidase activity // traceable author statement /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042043 // neurexin family protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 15.15 37.12 1.29 0.24 0.31 -4.58
215952_s_at 215952_s_at AF090094 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF090094.1 /DEF=Homo sapiens clone IMAGE 172979. /FEA=mRNA /DB_XREF=gi:4063629 /UG=Hs.125078 ornithine decarboxylase antizyme 1 AF090094 ornithine decarboxylase antizyme 1 OAZ1 4946 NM_004152 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0045732 // positive regulation of protein catabolic process // inferred from sequence or structural similarity 0005829 // cytosol // traceable author statement 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008073 // ornithine decarboxylase inhibitor activity // inferred from electronic annotation -114.78 1349.44 -1.29 0.24 0.31 -4.58
200687_s_at 200687_s_at NM_012426 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012426.1 /DEF=Homo sapiens splicing factor 3b, subunit 3, 130kD (SF3B3), mRNA. /FEA=mRNA /GEN=SF3B3 /PROD=splicing factor 3b, subunit 3, 130kD /DB_XREF=gi:11034822 /UG=Hs.195614 splicing factor 3b, subunit 3, 130kD /FL=gb:NM_012426.1 gb:BC000463.1 gb:BC003146.1 gb:D13642.1 gb:D87686.1 NM_012426 splicing factor 3b, subunit 3, 130kDa SF3B3 23450 NM_012426 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006461 // protein complex assembly // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 25.15 191.35 1.28 0.24 0.32 -4.58
221675_s_at 221675_s_at AF195624 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF195624.1 /DEF=Homo sapiens cholinephosphotransferase 1 beta mRNA, complete cds. /FEA=mRNA /PROD=cholinephosphotransferase 1 beta /DB_XREF=gi:9502012 /UG=Hs.171889 cholinephosphotransferase 1 /FL=gb:AF195624.1 AF195624 choline phosphotransferase 1 CHPT1 56994 NM_020244 /// XM_005269036 /// XR_245946 0001558 // regulation of cell growth // non-traceable author statement /// 0006629 // lipid metabolic process // traceable author statement /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006656 // phosphatidylcholine biosynthetic process // inferred from direct assay /// 0006656 // phosphatidylcholine biosynthetic process // traceable author statement /// 0006657 // CDP-choline pathway // non-traceable author statement /// 0006663 // platelet activating factor biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // non-traceable author statement 0004142 // diacylglycerol cholinephosphotransferase activity // inferred from direct assay /// 0004142 // diacylglycerol cholinephosphotransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation /// 0019992 // diacylglycerol binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 24.28 201.74 1.28 0.24 0.32 -4.58
217772_s_at 217772_s_at NM_014342 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014342.1 /DEF=Homo sapiens mitochondrial carrier homolog 2 (MTCH2), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=MTCH2 /PROD=mitochondrial carrier homolog 2 /DB_XREF=gi:7657346 /UG=Hs.279609 mitochondrial carrier homolog 2 /FL=gb:BC000875.1 gb:AF085361.1 gb:AF176008.1 gb:NM_014342.1 NM_014342 mitochondrial carrier 2 MTCH2 23788 NM_014342 /// XM_005252841 /// XM_006718172 /// XM_006718173 0006810 // transport // inferred from electronic annotation /// 0070585 // protein localization to mitochondrion // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay -61.47 479.81 -1.28 0.24 0.32 -4.58
221509_at 221509_at AB014731 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB014731.1 /DEF=Homo sapiens mRNA for SMAP-3, complete cds. /FEA=mRNA /GEN=smap-3 /PROD=SMAP-3 /DB_XREF=gi:12248760 /UG=Hs.22393 density-regulated protein /FL=gb:AB014731.1 AB014731 density-regulated protein DENR 8562 NM_003677 0001731 // formation of translation preinitiation complex // inferred from direct assay /// 0002192 // IRES-dependent translational initiation // inferred from direct assay /// 0006413 // translational initiation // inferred from electronic annotation /// 0032790 // ribosome disassembly // inferred from direct assay 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 22.25 312.23 1.28 0.24 0.32 -4.58
208708_x_at 208708_x_at AL080102 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL080102.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564N1916 (from clone DKFZp564N1916); complete cds. /FEA=mRNA /GEN=DKFZp564N1916 /PROD=hypothetical protein /DB_XREF=gi:5262526 /UG=Hs.286236 eukaryotic translation initiation factor 5 /FL=gb:AL080102.1 AL080102 eukaryotic translation initiation factor 5 EIF5 1983 NM_001969 /// NM_183004 0006184 // GTP catabolic process // traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // non-traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 30.82 266.41 1.27 0.24 0.32 -4.58
208668_x_at 208668_x_at BC003689 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003689.1 /DEF=Homo sapiens, high-mobility group (nonhistone chromosomal) protein 17, clone MGC:5301, mRNA, complete cds. /FEA=mRNA /PROD=high-mobility group (nonhistone chromosomal)protein 17 /DB_XREF=gi:13277559 /UG=Hs.181163 high-mobility group (nonhistone chromosomal) protein 17 /FL=gb:BC003689.1 gb:M12623.1 BC003689 high mobility group nucleosomal binding domain 2 HMGN2 3151 NM_005517 0006325 // chromatin organization // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author statement /// 0031492 // nucleosomal DNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 99.78 1448.04 1.27 0.24 0.32 -4.58
203552_at 203552_at AW298170 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW298170 /FEA=EST /DB_XREF=gi:6704806 /DB_XREF=est:UI-H-BW0-ajt-a-06-0-UI.s1 /CLONE=IMAGE:2732819 /UG=Hs.246970 mitogen-activated protein kinase kinase kinase kinase 5 /FL=gb:U77129.1 gb:NM_006575.1 AW298170 mitogen-activated protein kinase kinase kinase kinase 5 MAP4K5 11183 NM_006575 /// NM_198794 /// XM_006720013 /// XM_006720014 0000165 // MAPK cascade // /// 0000185 // activation of MAPKKK activity // /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007257 // activation of JUN kinase activity // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008349 // MAP kinase kinase kinase kinase activity // /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -23.50 130.32 -1.27 0.24 0.32 -4.58
202462_s_at 202462_s_at NM_014829 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014829.1 /DEF=Homo sapiens KIAA0801 gene product (KIAA0801), mRNA. /FEA=mRNA /GEN=KIAA0801 /PROD=KIAA0801 gene product /DB_XREF=gi:7662317 /UG=Hs.17585 KIAA0801 gene product /FL=gb:AB018344.1 gb:NM_014829.1 NM_014829 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 DDX46 9879 NM_014829 /// XM_005272142 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -39.68 294.41 -1.27 0.24 0.32 -4.58
203395_s_at 203395_s_at NM_005524 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005524.2 /DEF=Homo sapiens hairy (Drosophila)-homolog (HRY), mRNA. /FEA=mRNA /GEN=HRY /PROD=hairy (Drosophila)-homolog /DB_XREF=gi:8400709 /UG=Hs.250666 hairy (Drosophila)-homolog /FL=gb:AF264785.1 gb:NM_005524.2 NM_005524 hes family bHLH transcription factor 1 HES1 3280 NM_005524 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0003143 // embryonic heart tube morphogenesis // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from sequence or structural similarity /// 0003266 // regulation of secondary heart field cardioblast proliferation // inferred from sequence or structural similarity /// 0003281 // ventricular septum development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // traceable author statement /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007262 // STAT protein import into nucleus // inferred from sequence or structural similarity /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0016477 // cell migration // inferred from electronic annotation /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021555 // midbrain-hindbrain boundary morphogenesis // inferred from electronic annotation /// 0021557 // oculomotor nerve development // inferred from electronic annotation /// 0021558 // trochlear nerve development // inferred from electronic annotation /// 0021575 // hindbrain morphogenesis // inferred from electronic annotation /// 0021861 // forebrain radial glial cell differentiation // inferred from sequence or structural similarity /// 0021915 // neural tube development // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0031016 // pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // traceable author statement /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035909 // aorta morphogenesis // inferred from electronic annotation /// 0035910 // ascending aorta morphogenesis // inferred from sequence or structural similarity /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from sequence or structural similarity /// 0042668 // auditory receptor cell fate determination // inferred from electronic annotation /// 0043388 // positive regulation of DNA binding // inferred from sequence or structural similarity /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045598 // regulation of fat cell differentiation // inferred from electronic annotation /// 0045608 // negative regulation of auditory receptor cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045977 // positive regulation of mitotic cell cycle, embryonic // inferred from sequence or structural similarity /// 0046331 // lateral inhibition // inferred from electronic annotation /// 0046427 // positive regulation of JAK-STAT cascade // inferred from sequence or structural similarity /// 0048469 // cell maturation // inferred from electronic annotation /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048538 // thymus development // inferred from sequence or structural similarity /// 0048667 // cell morphogenesis involved in neuron differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from sequence or structural similarity /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // inferred from sequence or structural similarity /// 0060164 // regulation of timing of neuron differentiation // inferred from electronic annotation /// 0060253 // negative regulation of glial cell proliferation // inferred from sequence or structural similarity /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060675 // ureteric bud morphogenesis // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0061009 // common bile duct development // inferred from electronic annotation /// 0061106 // negative regulation of stomach neuroendocrine cell differentiation // inferred from electronic annotation /// 0061309 // cardiac neural crest cell development involved in outflow tract morphogenesis // inferred from sequence or structural similarity /// 0061626 // pharyngeal arch artery morphogenesis // inferred from sequence or structural similarity /// 0072012 // glomerulus vasculature development // inferred from electronic annotation /// 0072049 // comma-shaped body morphogenesis // inferred from electronic annotation /// 0072050 // S-shaped body morphogenesis // inferred from electronic annotation /// 0072141 // renal interstitial cell development // inferred from electronic annotation /// 0072282 // metanephric nephron tubule morphogenesis // inferred from electronic annotation /// 0090102 // cochlea development // inferred from electronic annotation /// 0097084 // vascular smooth muscle cell development // inferred from sequence or structural similarity /// 0097150 // neuronal stem cell maintenance // inferred from expression pattern /// 2000227 // negative regulation of pancreatic A cell differentiation // inferred from electronic annotation /// 2000737 // negative regulation of stem cell differentiation // inferred from mutant phenotype /// 2000974 // negative regulation of pro-B cell differentiation // inferred from mutant phenotype /// 2000978 // negative regulation of forebrain neuron differentiation // inferred from sequence or structural similarity /// 2000981 // negative regulation of inner ear receptor cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from sequence or structural similarity /// 0003677 // DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // non-traceable author statement /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0071820 // N-box binding // inferred from sequence or structural similarity -21.85 125.68 -1.27 0.24 0.32 -4.58
216620_s_at 216620_s_at AF009205 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF009205.1 /DEF=Homo sapiens clone L5 unknown mRNA, partial cds. /FEA=mRNA /PROD=unknown /DB_XREF=gi:2454511 /UG=Hs.20695 Rho guanine nucleotide exchange factor (GEF) 10 AF009205 Rho guanine nucleotide exchange factor (GEF) 10 ARHGEF10 9639 NM_014629 /// XM_005266039 /// XM_005266040 /// XM_005266041 /// XM_005266042 /// XM_006716238 /// XM_006716239 /// XM_006716240 /// XM_006716241 /// XM_006725104 /// XM_006725105 /// XM_006725106 /// XM_006725107 /// XM_006725108 /// XM_006725109 /// XM_006725110 /// XM_006725111 0022011 // myelination in peripheral nervous system // inferred from mutant phenotype /// 0032319 // regulation of Rho GTPase activity // inferred from direct assay /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from direct assay /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0033126 // positive regulation of GTP catabolic process // inferred from direct assay /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051298 // centrosome duplication // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0090307 // spindle assembly involved in mitosis // inferred from mutant phenotype 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019894 // kinesin binding // inferred from physical interaction 27.42 146.64 1.27 0.24 0.32 -4.58
202636_at 202636_at NM_005667 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005667.1 /DEF=Homo sapiens zinc finger protein homologous to Zfp103 in mouse (ZFP103), mRNA. /FEA=mRNA /GEN=ZFP103 /PROD=zinc finger protein homologous to Zfp103 inmouse /DB_XREF=gi:5031824 /UG=Hs.155968 zinc finger protein homologous to Zfp103 in mouse /FL=gb:D76444.1 gb:NM_005667.1 NM_005667 ring finger protein 103 RNF103 7844 NM_001198951 /// NM_001198952 /// NM_005667 0007417 // central nervous system development // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -35.50 247.65 -1.27 0.24 0.32 -4.58
209120_at 209120_at AL037401 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL037401 /FEA=EST /DB_XREF=gi:5406798 /DB_XREF=est:DKFZp564K1671_s1 /CLONE=DKFZp564K1671 /UG=Hs.288869 nuclear receptor subfamily 2, group F, member 2 /FL=gb:M64497.1 AL037401 nuclear receptor subfamily 2, group F, member 2 NR2F2 7026 NM_001145155 /// NM_001145156 /// NM_001145157 /// NM_021005 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001893 // maternal placenta development // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006629 // lipid metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0009956 // radial pattern formation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010596 // negative regulation of endothelial cell migration // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0021796 // cerebral cortex regionalization // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // inferred from direct assay /// 0030522 // intracellular receptor signaling pathway // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0001972 // retinoic acid binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred by curator /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044323 // retinoic acid-responsive element binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 39.80 615.02 1.27 0.24 0.32 -4.58
209953_s_at 209953_s_at U63131 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U63131.1 /DEF=Human CDC37 homolog mRNA, complete cds. /FEA=mRNA /PROD=CDC37 homolog /DB_XREF=gi:1421820 /UG=Hs.160958 CDC37 (cell division cycle 37, S. cerevisiae, homolog) /FL=gb:BC000083.1 gb:U43077.1 gb:U63131.1 gb:NM_007065.1 U63131 cell division cycle 37 CDC37 11140 NM_007065 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0006605 // protein targeting // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // inferred from mutant phenotype /// 0060338 // regulation of type I interferon-mediated signaling pathway // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation /// 0043422 // protein kinase B binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // traceable author statement /// 0051087 // chaperone binding // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from electronic annotation -48.70 252.95 -1.27 0.24 0.32 -4.58
216207_x_at 216207_x_at AW408194 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW408194 /FEA=EST /DB_XREF=gi:6927251 /DB_XREF=est:UI-HF-BL0-abw-b-10-0-UI.r1 /CLONE=IMAGE:3057763 /UG=Hs.37089 immunoglobulin kappa variable 1-13 AW408194 immunoglobulin kappa constant IGKC 3514 0001895 // retina homeostasis // inferred from expression pattern /// 0006955 // immune response // non-traceable author statement /// 0006956 // complement activation // traceable author statement /// 0006958 // complement activation, classical pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050776 // regulation of immune response // traceable author statement 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0003823 // antigen binding // non-traceable author statement -21.80 41.50 -1.27 0.24 0.32 -4.58
221269_s_at 221269_s_at NM_031286 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031286.1 /DEF=Homo sapiens SH3BGRL3-like protein (SH3BGRL3), mRNA. /FEA=mRNA /GEN=SH3BGRL3 /PROD=SH3BGRL3-like protein /DB_XREF=gi:13775197 /FL=gb:NM_031286.1 NM_031286 SH3 domain binding glutamate-rich protein like 3 SH3BGRL3 83442 NM_031286 0030834 // regulation of actin filament depolymerization // inferred from mutant phenotype /// 0032321 // positive regulation of Rho GTPase activity // inferred from mutant phenotype /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0043535 // regulation of blood vessel endothelial cell migration // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005100 // Rho GTPase activator activity // inferred from mutant phenotype /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0030215 // semaphorin receptor binding // inferred from physical interaction 50.42 589.41 1.27 0.24 0.32 -4.58
39729_at 39729_at L19185 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. L19185:Human natural killer cell enhancing factor (NKEFB) mRNA, complete cds /cds=(124,720) /gb=L19185 /gi=440307 /ug=Hs.146354 /len=980 L19185 peroxiredoxin 2 PRDX2 7001 NM_005809 /// NM_181737 /// NM_181738 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0006979 // response to oxidative stress // non-traceable author statement /// 0019430 // removal of superoxide radicals // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from direct assay /// 0042744 // hydrogen peroxide catabolic process // traceable author statement /// 0042981 // regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004601 // peroxidase activity // inferred from electronic annotation /// 0008379 // thioredoxin peroxidase activity // inferred from direct assay /// 0008379 // thioredoxin peroxidase activity // traceable author statement /// 0016209 // antioxidant activity // inferred from direct assay /// 0016209 // antioxidant activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 22.40 385.93 1.27 0.24 0.32 -4.58
217835_x_at 217835_x_at NM_018840 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018840.1 /DEF=Homo sapiens putative Rab5-interacting protein (LOC55969), mRNA. /FEA=mRNA /GEN=LOC55969 /PROD=putative Rab5-interacting protein /DB_XREF=gi:10047115 /UG=Hs.184062 putative Rab5-interacting protein /FL=gb:NM_018840.1 gb:AF274936.1 gb:AF112213.1 NM_018840 chromosome 20 open reading frame 24 /// TGIF2-C20orf24 readthrough C20orf24 /// TGIF2-C20orf24 55969 /// 100527943 NM_001199534 /// NM_001199535 /// NM_018840 /// NM_199483 /// NM_199484 /// NM_199485 /// NR_026562 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 47.98 771.59 1.26 0.24 0.32 -4.58
201864_at 201864_at NM_001493 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001493.1 /DEF=Homo sapiens GDP dissociation inhibitor 1 (GDI1), mRNA. /FEA=mRNA /GEN=GDI1 /PROD=GDP dissociation inhibitor 1 /DB_XREF=gi:4503970 /UG=Hs.74576 GDP dissociation inhibitor 1 /FL=gb:BC000317.1 gb:NM_001493.1 gb:D45021.1 NM_001493 GDP dissociation inhibitor 1 GDI1 2664 NM_001493 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0032482 // Rab protein signal transduction // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0090315 // negative regulation of protein targeting to membrane // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0030496 // midbody // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0005092 // GDP-dissociation inhibitor activity // traceable author statement /// 0005093 // Rab GDP-dissociation inhibitor activity // inferred from sequence or structural similarity /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017137 // Rab GTPase binding // inferred from electronic annotation 53.83 350.99 1.26 0.24 0.32 -4.58
208807_s_at 208807_s_at U91543 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U91543.1 /DEF=Homo sapiens zinc-finger helicase (hZFH) mRNA, complete cds. /FEA=mRNA /GEN=hZFH /PROD=zinc-finger helicase /DB_XREF=gi:3298561 /UG=Hs.25601 chromodomain helicase DNA binding protein 3 /FL=gb:U91543.1 U91543 chromodomain helicase DNA binding protein 3 CHD3 1107 NM_001005271 /// NM_001005273 /// NM_005852 /// XM_005256427 /// XM_005256428 /// XM_005256429 /// XM_005256431 /// XM_006721423 /// XM_006721424 /// XM_006721425 /// XM_006721426 /// XM_006721427 /// XM_006721428 /// XM_006721429 /// XM_006721430 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007051 // spindle organization // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0051297 // centrosome organization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016581 // NuRD complex // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // traceable author statement /// 0004386 // helicase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 18.98 222.64 1.26 0.25 0.32 -4.58
213258_at 213258_at BF511231 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF511231 /FEA=EST /DB_XREF=gi:11594529 /DB_XREF=est:UI-H-BI4-aoi-g-11-0-UI.s1 /CLONE=IMAGE:3085244 /UG=Hs.288582 ESTs, Weakly similar to ubiquitous TPR motif, Y isoform H.sapiens BF511231 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) TFPI 7035 NM_001032281 /// NM_006287 /// XM_005246818 /// XM_005246819 /// XM_005246820 /// XM_006712720 0007596 // blood coagulation // traceable author statement /// 0007598 // blood coagulation, extrinsic pathway // traceable author statement /// 0007599 // hemostasis // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation -83.10 726.73 -1.26 0.25 0.32 -4.58
203113_s_at 203113_s_at NM_001960 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001960.1 /DEF=Homo sapiens eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) (EEF1D), mRNA. /FEA=mRNA /GEN=EEF1D /PROD=eukaryotic translation elongation factor 1 delta(guanine nucleotide exchange protein) /DB_XREF=gi:4503478 /UG=Hs.223241 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) /FL=gb:NM_001960.1 NM_001960 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) EEF1D 1936 NM_001130053 /// NM_001130054 /// NM_001130055 /// NM_001130056 /// NM_001130057 /// NM_001195203 /// NM_001289950 /// NM_001960 /// NM_032378 /// XM_005250820 /// XM_005250821 /// XM_005250823 /// XM_005250824 /// XM_005250825 /// XM_005250826 /// XM_006716519 /// XM_006716520 /// XM_006716521 /// XM_006716522 /// XM_006716523 /// XM_006716524 /// XM_006716525 /// XM_006725064 /// XM_006725065 /// XM_006725066 /// XM_006725067 /// XM_006725068 /// XM_006725069 /// XM_006725070 /// XM_006725071 /// XM_006725072 /// XM_006725073 /// XM_006725074 /// XM_006725075 /// XM_006725076 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0007165 // signal transduction // inferred from mutant phenotype /// 0010467 // gene expression // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement -92.63 774.81 -1.26 0.25 0.32 -4.58
200877_at 200877_at NM_006430 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006430.1 /DEF=Homo sapiens chaperonin containing TCP1, subunit 4 (delta) (CCT4), mRNA. /FEA=mRNA /GEN=CCT4 /PROD=chaperonin containing TCP1, subunit 4 (delta) /DB_XREF=gi:5453604 /UG=Hs.79150 chaperonin containing TCP1, subunit 4 (delta) /FL=gb:U38846.1 gb:AF026291.1 gb:NM_006430.1 NM_006430 chaperonin containing TCP1, subunit 4 (delta) CCT4 10575 NM_001256721 /// NM_006430 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 150.70 1384.30 1.26 0.25 0.33 -4.58
212096_s_at 212096_s_at AL096842 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL096842.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586D1519 (from clone DKFZp586D1519). /FEA=mRNA /DB_XREF=gi:5524930 /UG=Hs.7946 KIAA1288 protein AL096842 microtubule associated tumor suppressor 1 MTUS1 57509 NM_001001924 /// NM_001001925 /// NM_001001927 /// NM_001001931 /// NM_001166393 /// NM_020749 /// XM_005273577 /// XM_005273578 /// XM_005273579 /// XM_005273580 /// XM_005273581 /// XM_005273582 /// XM_005273583 /// XR_247126 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 131.85 891.02 1.25 0.25 0.33 -4.58
210835_s_at 210835_s_at AF222711 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF222711.1 /DEF=Homo sapiens ribeye mRNA, complete cds. /FEA=mRNA /PROD=ribeye /DB_XREF=gi:12034652 /UG=Hs.171391 C-terminal binding protein 2 /FL=gb:AF222711.1 gb:NM_022802.1 AF222711 C-terminal binding protein 2 CTBP2 1488 NM_001083914 /// NM_001290214 /// NM_001290215 /// NM_001329 /// NM_022802 /// XM_005269561 /// XM_005269562 /// XM_005269563 /// XM_005269564 /// XM_005269565 /// XM_005269567 /// XM_005269568 /// XM_005269569 /// XM_005269570 /// XM_005269571 /// XM_005269572 /// XM_006717641 /// XM_006717642 /// XM_006717643 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0019079 // viral genome replication // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 66.63 456.69 1.25 0.25 0.33 -4.58
218495_at 218495_at NM_004182 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004182.1 /DEF=Homo sapiens ubiquitously-expressed transcript (UXT), mRNA. /FEA=mRNA /GEN=UXT /PROD=ubiquitously-expressed transcript /DB_XREF=gi:4759297 /UG=Hs.172791 ubiquitously-expressed transcript /FL=gb:BC000720.1 gb:AF092737.1 gb:NM_004182.1 gb:AF083241.1 gb:AF083242.1 NM_004182 ubiquitously-expressed, prefoldin-like chaperone UXT 8409 NM_004182 /// NM_153477 /// NR_045559 /// NR_045560 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000226 // microtubule cytoskeleton organization // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // traceable author statement /// 0051297 // centrosome organization // inferred from mutant phenotype 0000930 // gamma-tubulin complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0016272 // prefoldin complex // inferred from electronic annotation 0001106 // RNA polymerase II transcription corepressor activity // inferred from direct assay /// 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // traceable author statement /// 0048487 // beta-tubulin binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 18.62 292.96 1.25 0.25 0.33 -4.58
200959_at 200959_at NM_004960 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004960.1 /DEF=Homo sapiens fusion, derived from t(12;16) malignant liposarcoma (FUS), mRNA. /FEA=mRNA /GEN=FUS /PROD=fusion, derived from t(12;16) malignantliposarcoma /DB_XREF=gi:4826733 /UG=Hs.99969 fusion, derived from t(12;16) malignant liposarcoma /FL=gb:BC000402.1 gb:BC002459.1 gb:NM_004960.1 NM_004960 FUS RNA binding protein FUS 2521 NM_001010850 /// NM_001170634 /// NM_001170937 /// NM_004960 /// NR_028388 /// XM_005255233 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -30.83 363.74 -1.25 0.25 0.33 -4.58
200660_at 200660_at NM_005620 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005620.1 /DEF=Homo sapiens S100 calcium-binding protein A11 (calgizzarin) (S100A11), mRNA. /FEA=mRNA /GEN=S100A11 /PROD=S100 calcium-binding protein A11 /DB_XREF=gi:5032056 /UG=Hs.256290 S100 calcium-binding protein A11 (calgizzarin) /FL=gb:D49355.1 gb:BC001410.1 gb:D50374.1 gb:NM_005620.1 gb:D38583.1 NM_005620 S100 calcium binding protein A11 S100A11 6282 NM_005620 0007165 // signal transduction // traceable author statement /// 0008156 // negative regulation of DNA replication // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation 0001726 // ruffle // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044548 // S100 protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from direct assay 78.75 631.17 1.25 0.25 0.33 -4.58
214359_s_at 214359_s_at AI218219 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI218219 /FEA=EST /DB_XREF=gi:3798034 /DB_XREF=est:qh17h11.x1 /CLONE=IMAGE:1844997 /UG=Hs.74335 heat shock 90kD protein 1, beta AI218219 heat shock protein 90kDa alpha (cytosolic), class B member 1 HSP90AB1 3326 NM_001271969 /// NM_001271970 /// NM_001271971 /// NM_001271972 /// NM_007355 /// NR_073528 /// XM_005249075 0001890 // placenta development // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009651 // response to salt stress // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // inferred from mutant phenotype /// 0060338 // regulation of type I interferon-mediated signaling pathway // inferred from mutant phenotype /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016234 // inclusion body // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002134 // UTP binding // inferred from electronic annotation /// 0002135 // CTP binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017098 // sulfonylurea receptor binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0030235 // nitric-oxide synthase regulator activity // inferred from sequence or structural similarity /// 0030911 // TPR domain binding // inferred from sequence or structural similarity /// 0032564 // dATP binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation -83.77 1234.61 -1.25 0.25 0.33 -4.58
201588_at 201588_at NM_004786 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004786.1 /DEF=Homo sapiens thioredoxin-like, 32kD (TXNL), mRNA. /FEA=mRNA /GEN=TXNL /PROD=thioredoxin-like, 32kD /DB_XREF=gi:4759273 /UG=Hs.18792 thioredoxin-like, 32kD /FL=gb:BC001156.1 gb:AF003938.1 gb:AF051896.1 gb:AF052659.1 gb:NM_004786.1 NM_004786 thioredoxin-like 1 TXNL1 9352 NM_004786 /// NR_024546 /// XM_006722580 /// XM_006722581 /// XR_430086 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015036 // disulfide oxidoreductase activity // inferred from direct assay -33.18 698.71 -1.25 0.25 0.33 -4.58
206095_s_at 206095_s_at NM_006625 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006625.2 /DEF=Homo sapiens TLS-associated serine-arginine protein 1 (TASR1), mRNA. /FEA=mRNA /GEN=TASR1 /PROD=TLS-associated serine-arginine protein 1 /DB_XREF=gi:12056474 /UG=Hs.288038 TLS-associated serine-arginine protein 1 /FL=gb:NM_006625.2 NM_006625 serine/arginine-rich splicing factor 10 SRSF10 10772 NM_001191005 /// NM_001191006 /// NM_001191007 /// NM_001191009 /// NM_006625 /// NM_054016 /// NR_034035 /// XM_006710298 /// XM_006710299 /// XM_006710300 /// XM_006710301 0000244 // spliceosomal tri-snRNP complex assembly // non-traceable author statement /// 0000375 // RNA splicing, via transesterification reactions // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006376 // mRNA splice site selection // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // non-traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016482 // cytoplasmic transport // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // non-traceable author statement /// 0051082 // unfolded protein binding // non-traceable author statement 27.77 191.96 1.25 0.25 0.33 -4.58
202828_s_at 202828_s_at NM_004995 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004995.2 /DEF=Homo sapiens matrix metalloproteinase 14 (membrane-inserted) (MMP14), mRNA. /FEA=mRNA /GEN=MMP14 /PROD=matrix metalloproteinase 14 preproprotein /DB_XREF=gi:13027797 /UG=Hs.2399 matrix metalloproteinase 14 (membrane-inserted) /FL=gb:U41078.1 gb:NM_004995.2 NM_004995 matrix metallopeptidase 14 (membrane-inserted) MMP14 4323 NM_004995 0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030574 // collagen catabolic process // traceable author statement /// 0031638 // zymogen activation // inferred from electronic annotation /// 0043615 // astrocyte cell migration // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 45.07 154.16 1.24 0.25 0.33 -4.58
210764_s_at 210764_s_at AF003114 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF003114.1 /DEF=Homo sapiens CYR61 mRNA, complete cds. /FEA=mRNA /GEN=CYR61 /DB_XREF=gi:6649848 /UG=Hs.8867 cysteine-rich, angiogenic inducer, 61 /FL=gb:AF003114.1 AF003114 cysteine-rich, angiogenic inducer, 61 CYR61 3491 NM_001554 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0002041 // intussusceptive angiogenesis // inferred from electronic annotation /// 0003181 // atrioventricular valve morphogenesis // inferred from electronic annotation /// 0003278 // apoptotic process involved in heart morphogenesis // inferred from electronic annotation /// 0003281 // ventricular septum development // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0010518 // positive regulation of phospholipase activity // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030513 // positive regulation of BMP signaling pathway // inferred from genetic interaction /// 0033690 // positive regulation of osteoblast proliferation // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0044319 // wound healing, spreading of cells // inferred from direct assay /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060413 // atrial septum morphogenesis // inferred from electronic annotation /// 0060591 // chondroblast differentiation // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0072593 // reactive oxygen species metabolic process // inferred from electronic annotation /// 2000304 // positive regulation of ceramide biosynthetic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation 169.90 1472.80 1.24 0.25 0.33 -4.58
212347_x_at 212347_x_at AA831438 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA831438 /FEA=EST /DB_XREF=gi:2904537 /DB_XREF=est:oc74e08.s1 /CLONE=IMAGE:1355462 /UG=Hs.102402 Mad4 homolog AA831438 microRNA 4800 /// MAX dimerization protein 4 MIR4800 /// MXD4 10608 /// 100616358 NM_006454 /// NR_039964 /// XR_427467 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -24.78 153.21 -1.24 0.25 0.33 -4.58
218448_at 218448_at NM_017896 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017896.1 /DEF=Homo sapiens hypothetical protein FLJ20602 (FLJ20602), mRNA. /FEA=mRNA /GEN=FLJ20602 /PROD=hypothetical protein FLJ20602 /DB_XREF=gi:8923556 /UG=Hs.103808 hypothetical protein FLJ20602 /FL=gb:NM_017896.1 NM_017896 GID complex subunit 8 GID8 54994 NM_017896 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation -18.22 245.36 -1.24 0.25 0.33 -4.58
214315_x_at 214315_x_at AI348935 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI348935 /FEA=EST /DB_XREF=gi:4086141 /DB_XREF=est:tb60a01.x1 /CLONE=IMAGE:2058696 /UG=Hs.16488 calreticulin AI348935 calreticulin CALR 811 NM_004343 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002502 // peptide antigen assembly with MHC class I protein complex // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006611 // protein export from nucleus // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007050 // cell cycle arrest // inferred from genetic interaction /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0017148 // negative regulation of translation // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0022417 // protein maturation by protein folding // traceable author statement /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033144 // negative regulation of intracellular steroid hormone receptor signaling pathway // inferred from direct assay /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034504 // protein localization to nucleus // inferred from direct assay /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042921 // glucocorticoid receptor signaling pathway // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from genetic interaction /// 0045787 // positive regulation of cell cycle // inferred from genetic interaction /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050821 // protein stabilization // traceable author statement /// 0051208 // sequestering of calcium ion // traceable author statement /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // inferred from electronic annotation /// 0071285 // cellular response to lithium ion // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0090398 // cellular senescence // inferred from genetic interaction /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from mutant phenotype /// 2000510 // positive regulation of dendritic cell chemotaxis // inferred from mutant phenotype 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005844 // polysome // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation /// 0042824 // MHC class I peptide loading complex // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement /// 0071682 // endocytic vesicle lumen // traceable author statement 0001849 // complement component C1q binding // traceable author statement /// 0001948 // glycoprotein binding // inferred from physical interaction /// 0003677 // DNA binding // non-traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0030246 // carbohydrate binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation /// 0042562 // hormone binding // inferred from electronic annotation /// 0044183 // protein binding involved in protein folding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement /// 0051087 // chaperone binding // traceable author statement 199.68 741.29 1.23 0.26 0.34 -4.58
219058_x_at 219058_x_at NM_022164 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022164.1 /DEF=Homo sapiens P3ECSL (LIECG3), mRNA. /FEA=mRNA /GEN=LIECG3 /PROD=P3ECSL /DB_XREF=gi:11545917 /UG=Hs.173508 P3ECSL /FL=gb:AF205436.1 gb:AB050716.1 gb:NM_022164.1 gb:AF236150.1 NM_022164 tubulointerstitial nephritis antigen-like 1 TINAGL1 64129 NM_001204414 /// NM_001204415 /// NM_022164 /// XM_005271106 /// XM_005271107 0006508 // proteolysis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0016197 // endosomal transport // traceable author statement 0005576 // extracellular region // non-traceable author statement /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from electronic annotation /// 0043236 // laminin binding // inferred from electronic annotation -33.18 220.41 -1.23 0.26 0.34 -4.58
204145_at 204145_at NM_004477 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004477.1 /DEF=Homo sapiens FSHD region gene 1 (FRG1), mRNA. /FEA=mRNA /GEN=FRG1 /PROD=FSHD region gene 1 /DB_XREF=gi:4758403 /UG=Hs.203772 FSHD region gene 1 /FL=gb:L76159.1 gb:NM_004477.1 NM_004477 FSHD region gene 1 /// protein FRG1-like /// uncharacterized LOC101930278 /// protein FRG1-like FRG1 /// LOC100289097 /// LOC101930278 /// LOC101930531 2483 /// 100289097 /// 101930278 /// 101930531 NM_004477 /// XM_005262879 /// XM_005262880 /// XM_006714166 /// XM_006725445 /// XM_006725446 /// XM_006725447 /// XR_250590 /// XR_250603 /// XR_426484 /// XR_430284 /// XR_430390 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from electronic annotation -20.12 80.41 -1.23 0.26 0.34 -4.58
212285_s_at 212285_s_at AW008051 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW008051 /FEA=EST /DB_XREF=gi:5856829 /DB_XREF=est:wv48h10.x1 /CLONE=IMAGE:2532835 /UG=Hs.273330 Homo sapiens, clone IMAGE:3506210, mRNA, partial cds AW008051 agrin AGRN 375790 NM_198576 /// XM_005244749 /// XM_006710633 /// XM_006710634 /// XM_006710635 /// XM_006710636 /// XM_006710637 0001523 // retinoid metabolic process // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0007009 // plasma membrane organization // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007213 // G-protein coupled acetylcholine receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0008582 // regulation of synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0043113 // receptor clustering // inferred from direct assay /// 0043113 // receptor clustering // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045162 // clustering of voltage-gated sodium channels // traceable author statement /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045887 // positive regulation of synaptic growth at neuromuscular junction // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0050808 // synapse organization // traceable author statement /// 0051491 // positive regulation of filopodium assembly // inferred from sequence or structural similarity 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // traceable author statement /// 0043202 // lysosomal lumen // traceable author statement /// 0045202 // synapse // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002162 // dystroglycan binding // inferred from sequence or structural similarity /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0030548 // acetylcholine receptor regulator activity // inferred from electronic annotation /// 0033691 // sialic acid binding // inferred from sequence or structural similarity /// 0035374 // chondroitin sulfate binding // inferred from sequence or structural similarity /// 0043236 // laminin binding // traceable author statement /// 0043395 // heparan sulfate proteoglycan binding // inferred from sequence or structural similarity -28.03 247.24 -1.23 0.26 0.34 -4.58
217998_at 217998_at NM_007350 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_007350.1 /DEF=Homo sapiens pleckstrin homology-like domain, family A, member 1 (PHLDA1), mRNA. /FEA=mRNA /GEN=PHLDA1 /PROD=pleckstrin homology-like domain, family A,member 1 /DB_XREF=gi:6679302 /UG=Hs.82101 pleckstrin homology-like domain, family A, member 1 /FL=gb:NM_007350.1 NM_007350 pleckstrin homology-like domain, family A, member 1 PHLDA1 22822 NM_007350 0006915 // apoptotic process // inferred from electronic annotation /// 0021879 // forebrain neuron differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0045210 // FasL biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation 27.77 104.74 1.23 0.26 0.34 -4.59
212363_x_at 212363_x_at AU145192 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU145192 /FEA=EST /DB_XREF=gi:11006713 /DB_XREF=est:AU145192 /CLONE=HEMBA1004153 /UG=Hs.14376 actin, gamma 1 AU145192 actin, beta /// actin, gamma 1 ACTB /// ACTG1 60 /// 71 NM_001101 /// NM_001199954 /// NM_001614 /// NR_037688 /// XM_006715764 /// XM_006722048 /// XM_006722049 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -858.00 5776.73 -1.23 0.26 0.34 -4.59
201739_at 201739_at NM_005627 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005627.1 /DEF=Homo sapiens serumglucocorticoid regulated kinase (SGK), mRNA. /FEA=mRNA /GEN=SGK /PROD=serumglucocorticoid regulated kinase /DB_XREF=gi:5032090 /UG=Hs.296323 serumglucocorticoid regulated kinase /FL=gb:BC001263.1 gb:NM_005627.1 gb:AF153609.1 NM_005627 serum/glucocorticoid regulated kinase 1 SGK1 6446 NM_001143676 /// NM_001143677 /// NM_001143678 /// NM_001291995 /// NM_005627 0001558 // regulation of cell growth // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007616 // long-term memory // traceable author statement /// 0008217 // regulation of blood pressure // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030334 // regulation of cell migration // traceable author statement /// 0032411 // positive regulation of transporter activity // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0050790 // regulation of catalytic activity // traceable author statement /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060453 // regulation of gastric acid secretion // traceable author statement /// 0070294 // renal sodium ion absorption // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017080 // sodium channel regulator activity // traceable author statement /// 0017081 // chloride channel regulator activity // traceable author statement /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation -189.92 959.61 -1.23 0.26 0.34 -4.59
201360_at 201360_at NM_000099 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000099.1 /DEF=Homo sapiens cystatin C (amyloid angiopathy and cerebral hemorrhage) (CST3), mRNA. /FEA=mRNA /GEN=CST3 /PROD=cystatin C (amyloid angiopathy and cerebralhemorrhage) /DB_XREF=gi:4503106 /UG=Hs.135084 cystatin C (amyloid angiopathy and cerebral hemorrhage) /FL=gb:NM_000099.1 NM_000099 cystatin C CST3 1471 NM_000099 /// NM_001288614 0006952 // defense response // inferred from direct assay /// 0010466 // negative regulation of peptidase activity // inferred from direct assay /// 0010703 // negative regulation of histolysis // inferred by curator /// 0010711 // negative regulation of collagen catabolic process // inferred from expression pattern /// 0010716 // negative regulation of extracellular matrix disassembly // inferred by curator /// 0010716 // negative regulation of extracellular matrix disassembly // inferred from expression pattern /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0034103 // regulation of tissue remodeling // inferred from expression pattern /// 0043206 // extracellular fibril organization // inferred from genetic interaction /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0060311 // negative regulation of elastin catabolic process // inferred from mutant phenotype /// 0060313 // negative regulation of blood vessel remodeling // inferred from expression pattern 0005576 // extracellular region // inferred from mutant phenotype /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001540 // beta-amyloid binding // inferred from physical interaction /// 0002020 // protease binding // inferred from physical interaction /// 0004866 // endopeptidase inhibitor activity // inferred from direct assay /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 28.75 330.52 1.22 0.26 0.34 -4.59
200989_at 200989_at NM_001530 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001530.1 /DEF=Homo sapiens hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) (HIF1A), mRNA. /FEA=mRNA /GEN=HIF1A /PROD=hypoxia-inducible factor 1, alpha subunit (basichelix-loop-helix transcription factor) /DB_XREF=gi:4504384 /UG=Hs.197540 hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) /FL=gb:U29165.1 gb:AF304431.1 gb:NM_001530.1 gb:AF207601.1 gb:AF207602.1 gb:U22431.1 NM_001530 hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) HIF1A 3091 NM_001243084 /// NM_001530 /// NM_181054 0001525 // angiogenesis // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001922 // B-1 B cell homeostasis // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred by curator /// 0001944 // vasculature development // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0002248 // connective tissue replacement involved in inflammatory response wound healing // inferred from sequence or structural similarity /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003208 // cardiac ventricle morphogenesis // inferred from electronic annotation /// 0006089 // lactate metabolic process // inferred from electronic annotation /// 0006110 // regulation of glycolytic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // traceable author statement /// 0007595 // lactation // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from direct assay /// 0010573 // vascular endothelial growth factor production // inferred from direct assay /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from direct assay /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from sequence or structural similarity /// 0010870 // positive regulation of receptor biosynthetic process // inferred from mutant phenotype /// 0014850 // response to muscle activity // inferred from electronic annotation /// 0019896 // axon transport of mitochondrion // inferred from mutant phenotype /// 0021502 // neural fold elevation formation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030502 // negative regulation of bone mineralization // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred by curator /// 0032007 // negative regulation of TOR signaling // inferred from electronic annotation /// 0032364 // oxygen homeostasis // inferred from direct assay /// 0032722 // positive regulation of chemokine production // traceable author statement /// 0032909 // regulation of transforming growth factor beta2 production // inferred from mutant phenotype /// 0032963 // collagen metabolic process // inferred from sequence or structural similarity /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042541 // hemoglobin biosynthetic process // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred by curator /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from direct assay /// 0045648 // positive regulation of erythrocyte differentiation // inferred by curator /// 0045766 // positive regulation of angiogenesis // inferred by curator /// 0045821 // positive regulation of glycolytic process // inferred by curator /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045926 // negative regulation of growth // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0046716 // muscle cell cellular homeostasis // inferred from electronic annotation /// 0046886 // positive regulation of hormone biosynthetic process // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048546 // digestive tract morphogenesis // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // traceable author statement /// 0051216 // cartilage development // inferred from electronic annotation /// 0051541 // elastin metabolic process // inferred from sequence or structural similarity /// 0060574 // intestinal epithelial cell maturation // inferred from electronic annotation /// 0061030 // epithelial cell differentiation involved in mammary gland alveolus development // inferred from electronic annotation /// 0061298 // retina vasculature development in camera-type eye // inferred from electronic annotation /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0061419 // positive regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from direct assay /// 0061419 // positive regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from mutant phenotype /// 0070101 // positive regulation of chemokine-mediated signaling pathway // inferred by curator /// 0070243 // regulation of thymocyte apoptotic process // inferred from electronic annotation /// 0070244 // negative regulation of thymocyte apoptotic process // inferred from electronic annotation /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0071456 // cellular response to hypoxia // traceable author statement /// 0071542 // dopaminergic neuron differentiation // inferred from electronic annotation /// 2001054 // negative regulation of mesenchymal cell apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from physical interaction /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031514 // motile cilium // inferred from electronic annotation 0000988 // protein binding transcription factor activity // inferred from direct assay /// 0000989 // transcription factor binding transcription factor activity // inferred from direct assay /// 0001076 // RNA polymerase II transcription factor binding transcription factor activity // inferred from electronic annotation /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0035257 // nuclear hormone receptor binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from direct assay -41.20 874.62 -1.22 0.26 0.34 -4.59
210993_s_at 210993_s_at U54826 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U54826.1 /DEF=Human mad-related protein MADR1 mRNA, complete cds. /FEA=mRNA /PROD=mad-related protein MADR1 /DB_XREF=gi:1332713 /UG=Hs.79067 MAD (mothers against decapentaplegic, Drosophila) homolog 1 /FL=gb:U54826.1 gb:U59912.1 U54826 SMAD family member 1 SMAD1 4086 NM_001003688 /// NM_005900 /// XM_005262991 /// XM_005262992 /// XM_005262993 /// XM_006714217 0000165 // MAPK cascade // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001710 // mesodermal cell fate commitment // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0002051 // osteoblast fate commitment // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // non-traceable author statement /// 0007183 // SMAD protein complex assembly // inferred from direct assay /// 0007276 // gamete generation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from sequence or structural similarity /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010656 // negative regulation of muscle cell apoptotic process // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0030509 // BMP signaling pathway // traceable author statement /// 0030901 // midbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0031053 // primary miRNA processing // traceable author statement /// 0042060 // wound healing // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042592 // homeostatic process // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred by curator /// 0050775 // positive regulation of dendrite morphogenesis // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0060348 // bone development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071773 // cellular response to BMP stimulus // inferred from sequence or structural similarity /// 1901522 // positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus // inferred from sequence or structural similarity 0005622 // intracellular // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005637 // nuclear inner membrane // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016021 // integral component of membrane // non-traceable author statement /// 0043234 // protein complex // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005057 // receptor signaling protein activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030618 // transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity // traceable author statement /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from physical interaction /// 0070411 // I-SMAD binding // inferred from physical interaction 35.92 545.01 1.22 0.26 0.34 -4.59
208781_x_at 208781_x_at AF062483 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF062483.1 /DEF=Homo sapiens SDP3 mRNA, complete cds. /FEA=mRNA /PROD=SDP3 /DB_XREF=gi:3126978 /UG=Hs.12102 sorting nexin 3 /FL=gb:AF062483.1 gb:AF034546.1 gb:NM_003795.1 AF062483 sorting nexin 3 SNX3 8724 NM_003795 /// NM_152827 /// NM_152828 /// XM_005267192 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006897 // endocytosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0042541 // hemoglobin biosynthetic process // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from direct assay /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation 52.85 561.98 1.22 0.26 0.34 -4.59
221984_s_at 221984_s_at AL040896 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL040896 /FEA=EST /DB_XREF=gi:5409841 /DB_XREF=est:DKFZp434I2415_s1 /CLONE=DKFZp434I2415 /UG=Hs.22412 hypothetical protein MGC3035 AL040896 family with sequence similarity 134, member A FAM134A 79137 NM_024293 /// XM_005246848 /// XM_005246849 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -18.48 123.99 -1.22 0.26 0.34 -4.59
213133_s_at 213133_s_at AW237404 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW237404 /FEA=EST /DB_XREF=gi:6569793 /DB_XREF=est:xm71d06.x1 /CLONE=IMAGE:2689643 /UG=Hs.77631 glycine cleavage system protein H (aminomethyl carrier) AW237404 glycine cleavage system protein H (aminomethyl carrier) /// glycine cleavage system H protein, mitochondrial-like GCSH /// LOC101060817 2653 /// 101060817 NM_004483 /// NR_033249 /// XM_003960892 0006546 // glycine catabolic process // traceable author statement /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0032259 // methylation // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005960 // glycine cleavage complex // inferred from electronic annotation 0004047 // aminomethyltransferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation 40.10 188.10 1.22 0.26 0.34 -4.59
211924_s_at 211924_s_at AY029180 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AY029180.1 /DEF=Homo sapiens soluble urokinase plasminogen activator receptor precursor (SUPAR) mRNA, complete cds. /FEA=CDS /GEN=SUPAR /PROD=soluble urokinase plasminogen activator receptorprecursor /DB_XREF=gi:13641308 /FL=gb:AY029180.1 AY029180 plasminogen activator, urokinase receptor PLAUR 5329 NM_001005376 /// NM_001005377 /// NM_002659 /// XM_005258988 /// XM_005258989 /// XM_005258990 /// XM_006723241 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006501 // C-terminal protein lipidation // traceable author statement /// 0006928 // cellular component movement // non-traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0016255 // attachment of GPI anchor to protein // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030162 // regulation of proteolysis // non-traceable author statement /// 0038195 // urokinase plasminogen activator signaling pathway // non-traceable author statement /// 0042730 // fibrinolysis // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0019898 // extrinsic component of membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0004872 // receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030377 // urokinase plasminogen activator receptor activity // non-traceable author statement 21.93 111.76 1.22 0.26 0.34 -4.59
201576_s_at 201576_s_at NM_000404 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000404.1 /DEF=Homo sapiens galactosidase, beta 1 (GLB1), mRNA. /FEA=mRNA /GEN=GLB1 /PROD=galactosidase, beta 1 /DB_XREF=gi:10834965 /UG=Hs.79222 galactosidase, beta 1 /FL=gb:NM_000404.1 gb:M27507.1 gb:M22590.1 gb:M34423.1 NM_000404 galactosidase, beta 1 /// transmembrane protein with metallophosphoesterase domain GLB1 /// TMPPE 2720 /// 643853 NM_000404 /// NM_001039770 /// NM_001079811 /// NM_001135602 /// NM_001136238 0005975 // carbohydrate metabolic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0019388 // galactose catabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0042340 // keratan sulfate catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0009341 // beta-galactosidase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004565 // beta-galactosidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016936 // galactoside binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -27.00 311.70 -1.22 0.26 0.34 -4.59
201059_at 201059_at NM_005231 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005231.1 /DEF=Homo sapiens ems1 sequence (mammary tumor and squamous cell carcinoma-associated (p8085 src substrate) (EMS1), mRNA. /FEA=mRNA /GEN=EMS1 /PROD=cortactin /DB_XREF=gi:4885204 /UG=Hs.119257 ems1 sequence (mammary tumor and squamous cell carcinoma-associated (p8085 src substrate) /FL=gb:M98343.1 gb:NM_005231.1 NM_005231 cortactin CTTN 2017 NM_001184740 /// NM_005231 /// NM_138565 /// XM_006718447 /// XM_006718448 0001726 // ruffle // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from direct assay /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 94.35 238.43 1.22 0.26 0.34 -4.59
209130_at 209130_at BC003686 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003686.1 /DEF=Homo sapiens, synaptosomal-associated protein, 23kD, clone MGC:5155, mRNA, complete cds. /FEA=mRNA /PROD=synaptosomal-associated protein, 23kD /DB_XREF=gi:13277555 /UG=Hs.184376 synaptosomal-associated protein, 23kD /FL=gb:BC000148.2 gb:BC003686.1 gb:U55936.1 gb:Y09567.1 BC003686 synaptosomal-associated protein, 23kDa SNAP23 8773 NM_003825 /// NM_130798 /// XM_006720725 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006903 // vesicle targeting // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061025 // membrane fusion // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042581 // specific granule // inferred from direct assay /// 0042582 // azurophil granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 61.40 624.92 1.22 0.26 0.34 -4.59
201626_at 201626_at BG292233 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG292233 /FEA=EST /DB_XREF=gi:13050848 /DB_XREF=est:602386668F1 /CLONE=IMAGE:4515521 /UG=Hs.56205 insulin induced gene 1 /FL=gb:NM_005542.1 BG292233 insulin induced gene 1 INSIG1 3638 NM_005542 /// NM_198336 /// NM_198337 /// XM_005249542 /// XM_005249543 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006991 // response to sterol depletion // inferred from electronic annotation /// 0008152 // metabolic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010894 // negative regulation of steroid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0032933 // SREBP signaling pathway // inferred from direct assay /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation /// 1901303 // negative regulation of cargo loading into COPII-coated vesicle // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 25.83 137.21 1.22 0.26 0.34 -4.59
209868_s_at 209868_s_at D28482 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D28482.1 /DEF=Human scr2 mRNA for RNA binding protein SCR2, complete cds. /FEA=mRNA /GEN=scr2 /PROD=SCR2 /DB_XREF=gi:520588 /UG=Hs.241567 RNA binding motif, single stranded interacting protein 1 /FL=gb:D28482.1 gb:NM_016836.1 gb:NM_016838.1 gb:NM_002897.2 D28482 RNA binding motif, single stranded interacting protein 1 RBMS1 5937 NM_002897 /// NM_016836 /// NM_016839 /// XM_005246737 /// XM_005246738 /// XM_005246739 /// XM_005246740 /// XM_005246741 /// XM_006712671 /// XM_006712672 /// XM_006712673 /// XM_006712674 /// XM_006712675 0006260 // DNA replication // non-traceable author statement /// 0006396 // RNA processing // traceable author statement 0005634 // nucleus // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // non-traceable author statement /// 0003697 // single-stranded DNA binding // non-traceable author statement /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 34.22 395.71 1.22 0.26 0.34 -4.59
216107_at 216107_at AF218021 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF218021.1 /DEF=Homo sapiens clone PP552 unknown mRNA. /FEA=mRNA /PROD=unknown /DB_XREF=gi:10441971 /UG=Hs.302127 Homo sapiens clone PP552 unknown mRNA AF218021 uncharacterized LOC100129503 PP13 100129503 XR_243769 -14.52 42.41 -1.21 0.26 0.34 -4.59
218849_s_at 218849_s_at NM_006663 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006663.1 /DEF=Homo sapiens RelA-associated inhibitor (RAI), mRNA. /FEA=mRNA /GEN=RAI /PROD=RelA-associated inhibitor /DB_XREF=gi:5730000 /UG=Hs.324051 RelA-associated inhibitor /FL=gb:AF078037.1 gb:NM_006663.1 NM_006663 protein phosphatase 1, regulatory subunit 13 like PPP1R13L 10848 NM_001142502 /// NM_006663 /// XM_005258424 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0003215 // cardiac right ventricle morphogenesis // inferred from electronic annotation /// 0003229 // ventricular cardiac muscle tissue development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042633 // hair cycle // inferred from electronic annotation /// 0048871 // multicellular organismal homeostasis // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction -22.52 217.16 -1.21 0.26 0.34 -4.59
211995_x_at 211995_x_at AL567820 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL567820 /FEA=EST /DB_XREF=gi:12921560 /DB_XREF=est:AL567820 /CLONE=CS0DF033YD24 (3 prime) /UG=Hs.14376 actin, gamma 1 AL567820 actin, beta /// actin, gamma 1 ACTB /// ACTG1 60 /// 71 NM_001101 /// NM_001199954 /// NM_001614 /// NR_037688 /// XM_006715764 /// XM_006722048 /// XM_006722049 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -711.13 5533.66 -1.21 0.26 0.34 -4.59
210759_s_at 210759_s_at M64992 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M64992.1 /DEF=Human prosomal protein P30-33K (pros-30) mRNA, complete cds. /FEA=mRNA /GEN=pros-30 /PROD=prosomal protein P30-33K /DB_XREF=gi:190446 /UG=Hs.82159 proteasome (prosome, macropain) subunit, alpha type, 1 /FL=gb:M64992.1 M64992 proteasome (prosome, macropain) subunit, alpha type, 1 PSMA1 5682 NM_001143937 /// NM_002786 /// NM_148976 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0005844 // polysome // traceable author statement /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -71.60 960.60 -1.21 0.26 0.34 -4.59
218708_at 218708_at NM_013248 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013248.1 /DEF=Homo sapiens NTF2-related export protein 1 (NXT1), mRNA. /FEA=mRNA /GEN=NXT1 /PROD=NTF2-related export protein 1 /DB_XREF=gi:7019470 /UG=Hs.24563 NTF2-related export protein 1 /FL=gb:BC000759.1 gb:BC002687.1 gb:BC003029.1 gb:BC003410.1 gb:AF156957.1 gb:NM_013248.1 NM_013248 nuclear transport factor 2-like export factor 1 NXT1 29107 NM_013248 0006405 // RNA export from nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation -17.55 155.82 -1.21 0.26 0.34 -4.59
202458_at 202458_at NM_007173 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007173.1 /DEF=Homo sapiens protease, serine, 23 (SPUVE), mRNA. /FEA=mRNA /GEN=SPUVE /PROD=protease, serine, 23 /DB_XREF=gi:6005881 /UG=Hs.325820 protease, serine, 23 /FL=gb:AL136914.1 gb:BC001278.1 gb:AF015287.1 gb:NM_007173.1 gb:AF193611.1 NM_007173 protease, serine, 23 PRSS23 11098 NM_001293178 /// NM_001293179 /// NM_001293180 /// NM_007173 /// NR_120591 /// NR_120592 /// NR_120593 /// XM_005273727 /// XR_424260 /// XR_428964 /// XR_432738 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -80.65 1290.58 -1.21 0.26 0.34 -4.59
207525_s_at 207525_s_at NM_005716 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005716.1 /DEF=Homo sapiens chromosome 19 open reading frame 3 (C19ORF3), mRNA. /FEA=mRNA /GEN=C19ORF3 /PROD=GLUT1 C-terminal binding protein /DB_XREF=gi:5031714 /UG=Hs.6454 chromosome 19 open reading frame 3 /FL=gb:AF089816.1 gb:NM_005716.1 NM_005716 GIPC PDZ domain containing family, member 1 GIPC1 10755 NM_005716 /// NM_202467 /// NM_202468 /// NM_202469 /// NM_202470 /// NM_202494 0006605 // protein targeting // inferred from sequence or structural similarity /// 0007186 // G-protein coupled receptor signaling pathway // non-traceable author statement /// 0007268 // synaptic transmission // inferred from sequence or structural similarity /// 0014047 // glutamate secretion // inferred from sequence or structural similarity /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0031647 // regulation of protein stability // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0032467 // positive regulation of cytokinesis // inferred from mutant phenotype /// 0043542 // endothelial cell migration // inferred from sequence or structural similarity /// 0048167 // regulation of synaptic plasticity // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005903 // brush border // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0012506 // vesicle membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from sequence or structural similarity /// 0043198 // dendritic shaft // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from sequence or structural similarity /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0017022 // myosin binding // inferred from sequence or structural similarity /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 19.92 175.31 1.21 0.26 0.34 -4.59
202069_s_at 202069_s_at AI826060 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI826060 /FEA=EST /DB_XREF=gi:5446731 /DB_XREF=est:wk28a12.x1 /CLONE=IMAGE:2413630 /UG=Hs.250616 isocitrate dehydrogenase 3 (NAD+) alpha /FL=gb:NM_005530.1 gb:U07681.1 AI826060 isocitrate dehydrogenase 3 (NAD+) alpha IDH3A 3419 NM_005530 /// XM_005254334 /// XM_005254336 /// XM_005254337 0000038 // very long-chain fatty acid metabolic process // inferred from direct assay /// 0001552 // ovarian follicle atresia // inferred from electronic annotation /// 0001676 // long-chain fatty acid metabolic process // inferred from direct assay /// 0005975 // carbohydrate metabolic process // non-traceable author statement /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042552 // myelination // non-traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031957 // very long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 15.35 94.17 1.21 0.26 0.34 -4.59
217679_x_at 217679_x_at AI683552 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI683552 /FEA=EST /DB_XREF=gi:4893734 /DB_XREF=est:tx67h02.x1 /CLONE=IMAGE:2274675 /UG=Hs.201605 ESTs, Moderately similar to ALU8_HUMAN ALU SUBFAMILY SX SEQUENCE CONTAMINATION WARNING ENTRY H.sapiens AI683552 17.92 54.74 1.21 0.26 0.34 -4.59
212221_x_at 212221_x_at AV703259 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV703259 /FEA=EST /DB_XREF=gi:10720588 /DB_XREF=est:AV703259 /CLONE=ADBCRE12 /UG=Hs.303154 popeye protein 3 AV703259 iduronate 2-sulfatase IDS 3423 NM_000202 /// NM_001166550 /// NM_006123 /// NR_104128 0005975 // carbohydrate metabolic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030207 // chondroitin sulfate catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005764 // lysosome // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004423 // iduronate-2-sulfatase activity // traceable author statement /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 24.50 130.28 1.21 0.27 0.34 -4.59
200947_s_at 200947_s_at NM_005271 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005271.1 /DEF=Homo sapiens glutamate dehydrogenase 1 (GLUD1), mRNA. /FEA=mRNA /GEN=GLUD1 /PROD=glutamate dehydrogenase 1 /DB_XREF=gi:4885280 /UG=Hs.77508 glutamate dehydrogenase 1 /FL=gb:J03248.1 gb:M37154.1 gb:M20867.1 gb:NM_005271.1 NM_005271 glutamate dehydrogenase 1 GLUD1 2746 NM_005271 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // inferred from direct assay /// 0006538 // glutamate catabolic process // inferred from direct assay /// 0006541 // glutamine metabolic process // inferred from sequence or structural similarity /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0072350 // tricarboxylic acid metabolic process // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004352 // glutamate dehydrogenase (NAD+) activity // inferred from direct assay /// 0004353 // glutamate dehydrogenase [NAD(P)+] activity // not recorded /// 0004353 // glutamate dehydrogenase [NAD(P)+] activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016639 // oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // traceable author statement /// 0043531 // ADP binding // inferred from direct assay /// 0070403 // NAD+ binding // inferred from direct assay /// 0070728 // leucine binding // inferred from direct assay -50.17 268.86 -1.20 0.27 0.35 -4.59
201859_at 201859_at NM_002727 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002727.1 /DEF=Homo sapiens proteoglycan 1, secretory granule (PRG1), mRNA. /FEA=mRNA /GEN=PRG1 /PROD=proteoglycan 1, secretory granule /DB_XREF=gi:4506044 /UG=Hs.1908 proteoglycan 1, secretory granule /FL=gb:J03223.1 gb:NM_002727.1 NM_002727 serglycin SRGN 5552 NM_002727 /// NR_036430 0002576 // platelet degranulation // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008626 // granzyme-mediated apoptotic signaling pathway // inferred from direct assay /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0030168 // platelet activation // traceable author statement /// 0030502 // negative regulation of bone mineralization // inferred from direct assay /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0033364 // mast cell secretory granule organization // inferred from sequence or structural similarity /// 0033371 // T cell secretory granule organization // inferred from sequence or structural similarity /// 0033373 // maintenance of protease location in mast cell secretory granule // inferred from sequence or structural similarity /// 0033382 // maintenance of granzyme B location in T cell secretory granule // inferred from sequence or structural similarity /// 0050710 // negative regulation of cytokine secretion // inferred from sequence or structural similarity 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0042588 // zymogen granule // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from electronic annotation 118.45 1195.65 1.20 0.27 0.35 -4.59
201184_s_at 201184_s_at NM_001273 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001273.1 /DEF=Homo sapiens chromodomain helicase DNA binding protein 4 (CHD4), mRNA. /FEA=mRNA /GEN=CHD4 /PROD=chromodomain helicase DNA binding protein 4 /DB_XREF=gi:4557452 /UG=Hs.74441 chromodomain helicase DNA binding protein 4 /FL=gb:NM_001273.1 NM_001273 chromodomain helicase DNA binding protein 4 CHD4 1108 NM_001273 /// XM_005253668 /// XM_006718958 /// XM_006718959 /// XM_006718960 /// XM_006718961 /// XM_006718962 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0051225 // spindle assembly // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016581 // NuRD complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0004003 // ATP-dependent DNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -30.77 215.69 -1.20 0.27 0.35 -4.59
201954_at 201954_at NM_005720 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005720.1 /DEF=Homo sapiens actin related protein 23 complex, subunit 1A (41 kD) (ARPC1B), mRNA. /FEA=mRNA /GEN=ARPC1B /PROD=actin related protein 23 complex, subunit 1A(41 kD) /DB_XREF=gi:5031600 /UG=Hs.11538 actin related protein 23 complex, subunit 1A (41 kD) /FL=gb:BC002562.1 gb:AF006084.1 gb:NM_005720.1 NM_005720 actin related protein 2/3 complex, subunit 1B, 41kDa ARPC1B 10095 NM_005720 /// XM_006715825 /// XM_006715826 0006928 // cellular component movement // traceable author statement /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0015629 // actin cytoskeleton // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 77.73 711.81 1.20 0.27 0.35 -4.59
208674_x_at 208674_x_at BC002594 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002594.1 /DEF=Homo sapiens, dolichyl-diphosphooligosaccharide-protein glycosyltransferase, clone MGC:2191, mRNA, complete cds. /FEA=mRNA /PROD=dolichyl-diphosphooligosaccharide-proteinglycosyltransferase /DB_XREF=gi:12803530 /UG=Hs.34789 dolichyl-diphosphooligosaccharide-protein glycosyltransferase /FL=gb:BC002594.1 gb:D29643.1 gb:NM_005216.1 BC002594 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) DDOST 1650 NM_005216 0006412 // translation // traceable author statement /// 0006486 // protein glycosylation // inferred from sequence or structural similarity /// 0006487 // protein N-linked glycosylation // inferred from direct assay /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // inferred by curator /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0034097 // response to cytokine // inferred from direct assay /// 0042110 // T cell activation // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0008250 // oligosaccharyltransferase complex // inferred from sequence or structural similarity /// 0008250 // oligosaccharyltransferase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004576 // oligosaccharyl transferase activity // inferred from sequence or structural similarity /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred by curator /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 70.88 452.01 1.20 0.27 0.35 -4.59
210996_s_at 210996_s_at U43430 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U43430.1 /DEF=Human epsilon isoform 14-3-3 protein mRNA, complete cds. /FEA=mRNA /PROD=14-3-3 protein /DB_XREF=gi:4096984 /UG=Hs.79474 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, epsilon polypeptide /FL=gb:U43399.1 gb:U43430.1 U43430 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon YWHAE 7531 NM_006761 /// NR_024058 /// XM_005256784 /// XM_006725298 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001764 // neuron migration // inferred from electronic annotation /// 0003064 // regulation of heart rate by hormone // non-traceable author statement /// 0006605 // protein targeting // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0035308 // negative regulation of protein dephosphorylation // inferred from electronic annotation /// 0035329 // hippo signaling // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0060306 // regulation of membrane repolarization // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 0086013 // membrane repolarization during cardiac muscle cell action potential // inferred by curator /// 0086091 // regulation of heart rate by cardiac conduction // inferred by curator /// 0097190 // apoptotic signaling pathway // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement /// 1901016 // regulation of potassium ion transmembrane transporter activity // inferred from direct assay /// 1902309 // negative regulation of peptidyl-serine dephosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005871 // kinesin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0044325 // ion channel binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0050815 // phosphoserine binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 155.55 690.67 1.20 0.27 0.35 -4.59
204825_at 204825_at NM_014791 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014791.1 /DEF=Homo sapiens KIAA0175 gene product (KIAA0175), mRNA. /FEA=mRNA /GEN=KIAA0175 /PROD=KIAA0175 gene product /DB_XREF=gi:7661973 /UG=Hs.184339 KIAA0175 gene product /FL=gb:D79997.1 gb:NM_014791.1 NM_014791 maternal embryonic leucine zipper kinase MELK 9833 NM_001256685 /// NM_001256687 /// NM_001256688 /// NM_001256689 /// NM_001256690 /// NM_001256691 /// NM_001256692 /// NM_001256693 /// NM_014791 /// NR_046337 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptotic process // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0061351 // neural precursor cell proliferation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation -56.82 313.46 -1.20 0.27 0.35 -4.59
203250_at 203250_at NM_014892 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014892.1 /DEF=Homo sapiens KIAA1116 protein (KIAA1116), mRNA. /FEA=mRNA /GEN=KIAA1116 /PROD=KIAA1116 protein /DB_XREF=gi:7662491 /UG=Hs.227602 KIAA1116 protein /FL=gb:AB029039.1 gb:NM_014892.1 NM_014892 SR-related CTD-associated factor 8 SCAF8 22828 NM_001286188 /// NM_001286189 /// NM_001286194 /// NM_001286199 /// NM_014892 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016363 // nuclear matrix // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0043175 // RNA polymerase core enzyme binding // inferred from physical interaction 27.25 215.72 1.20 0.27 0.35 -4.59
217279_x_at 217279_x_at X83535 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X83535.1 /DEF=Homo sapiens mRNA for membrane-type matrix metalloproteinase. /FEA=mRNA /GEN=human 29 /PROD=MT-MMP /DB_XREF=gi:804993 /UG=Hs.2399 matrix metalloproteinase 14 (membrane-inserted) X83535 matrix metallopeptidase 14 (membrane-inserted) MMP14 4323 NM_004995 0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030574 // collagen catabolic process // traceable author statement /// 0031638 // zymogen activation // inferred from electronic annotation /// 0043615 // astrocyte cell migration // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 34.20 96.90 1.19 0.27 0.35 -4.59
209259_s_at 209259_s_at AF020043 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF020043.1 /DEF=Homo sapiens chromosome-associated polypeptide (HCAP) mRNA, complete cds. /FEA=mRNA /GEN=HCAP /PROD=chromosome-associated polypeptide /DB_XREF=gi:3089367 /UG=Hs.24485 chondroitin sulfate proteoglycan 6 (bamacan) /FL=gb:AF020043.1 gb:NM_005445.1 gb:AF067163.1 AF020043 structural maintenance of chromosomes 3 SMC3 9126 NM_005445 0000278 // mitotic cell cycle // traceable author statement /// 0006275 // regulation of DNA replication // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // inferred from expression pattern /// 0007062 // sister chromatid cohesion // inferred from mutant phenotype /// 0007062 // sister chromatid cohesion // non-traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from direct assay /// 0007165 // signal transduction // inferred from direct assay /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0032876 // negative regulation of DNA endoreduplication // inferred from mutant phenotype /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0000800 // lateral element // inferred from electronic annotation /// 0000922 // spindle pole // inferred from direct assay /// 0005604 // basement membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008278 // cohesin complex // non-traceable author statement /// 0016363 // nuclear matrix // inferred from direct assay /// 0030893 // meiotic cohesin complex // inferred from direct assay /// 0034991 // nuclear meiotic cohesin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0036033 // mediator complex binding // inferred from electronic annotation /// 0045502 // dynein binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 20.75 137.12 1.19 0.27 0.35 -4.59
201134_x_at 201134_x_at NM_001867 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001867.1 /DEF=Homo sapiens cytochrome c oxidase subunit VIIc (COX7C), mRNA. /FEA=mRNA /GEN=COX7C /PROD=cytochrome c oxidase subunit VIIc /DB_XREF=gi:4502992 /UG=Hs.3462 cytochrome c oxidase subunit VIIc /FL=gb:BC001005.1 gb:NM_001867.1 NM_001867 cytochrome c oxidase subunit VIIc COX7C 1350 NM_001867 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 40.92 946.06 1.19 0.27 0.35 -4.59
211505_s_at 211505_s_at AL136601 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136601.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564J1516 (from clone DKFZp564J1516); complete cds. /FEA=mRNA /GEN=DKFZp564J1516 /PROD=hypothetical protein /DB_XREF=gi:13276702 /UG=Hs.6113 staufen (Drosophila, RNA-binding protein) /FL=gb:AL136601.1 AL136601 staufen double-stranded RNA binding protein 1 STAU1 6780 NM_001037328 /// NM_004602 /// NM_017452 /// NM_017453 /// NM_017454 /// XM_005260524 /// XM_005260525 /// XM_005260526 /// XM_005260527 /// XM_005260528 /// XM_005260529 /// XM_006723865 /// XM_006723866 /// XM_006723867 /// XM_006723868 /// XM_006723869 0008298 // intracellular mRNA localization // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0044297 // cell body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008157 // protein phosphatase 1 binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -31.15 251.15 -1.19 0.27 0.35 -4.59
213843_x_at 213843_x_at AW276522 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW276522 /FEA=EST /DB_XREF=gi:6663552 /DB_XREF=est:xr15a02.x1 /CLONE=IMAGE:2760170 /UG=Hs.291904 accessory proteins BAP31BAP29 AW276522 solute carrier family 6 (neurotransmitter transporter), member 8 SLC6A8 6535 NM_001142805 /// NM_001142806 /// NM_005629 0006600 // creatine metabolic process // traceable author statement /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0015871 // choline transport // inferred from electronic annotation /// 0015881 // creatine transport // non-traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation /// 1902598 // creatine transmembrane transport // inferred from electronic annotation /// 1902598 // creatine transmembrane transport // non-traceable author statement /// 1902598 // creatine transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement 0005308 // creatine transmembrane transporter activity // non-traceable author statement /// 0005309 // creatine:sodium symporter activity // inferred from electronic annotation /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015220 // choline transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation -19.75 93.72 -1.19 0.27 0.35 -4.59
202564_x_at 202564_x_at NM_001667 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001667.1 /DEF=Homo sapiens ADP-ribosylation factor-like 2 (ARL2), mRNA. /FEA=mRNA /GEN=ARL2 /PROD=ADP-ribosylation factor-like 2 /DB_XREF=gi:4502228 /UG=Hs.154162 ADP-ribosylation factor-like 2 /FL=gb:BC002530.1 gb:L13687.1 gb:NM_001667.1 NM_001667 ADP-ribosylation factor-like 2 ARL2 402 NM_001199745 /// NM_001667 0006184 // GTP catabolic process // inferred from mutant phenotype /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007021 // tubulin complex assembly // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0031113 // regulation of microtubule polymerization // inferred from mutant phenotype /// 0031116 // positive regulation of microtubule polymerization // inferred from direct assay /// 0034260 // negative regulation of GTPase activity // inferred from direct assay /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0051457 // maintenance of protein location in nucleus // inferred from direct assay /// 0070830 // tight junction assembly // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005095 // GTPase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from mutant phenotype /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation -32.48 249.44 -1.19 0.27 0.35 -4.59
213491_x_at 213491_x_at AL514285 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL514285 /FEA=EST /DB_XREF=gi:12777779 /DB_XREF=est:AL514285 /CLONE=CL0BB007ZF04 (3 prime) /UG=Hs.75722 ribophorin II AL514285 ribophorin II RPN2 6185 NM_001135771 /// NM_002951 /// XM_005260491 /// XM_006723849 /// XM_006723850 /// XM_006723851 /// XM_006723852 0006412 // translation // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // non-traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from electronic annotation -183.50 1302.40 -1.19 0.27 0.35 -4.59
213989_x_at 213989_x_at AB004853 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB004853.1 /DEF=Homo sapiens mRNA expressed in neuron, clone IMAGE:546180. /FEA=mRNA /DB_XREF=gi:3702687 /UG=Hs.50748 chromosome 21 open reading frame 18 AB004853 SET domain containing 4 SETD4 54093 NM_001007258 /// NM_001007259 /// NM_001007260 /// NM_001007261 /// NM_001007262 /// NM_001286752 /// NM_017438 /// NR_040087 /// XM_005260999 /// XM_005261000 /// XM_005261001 /// XM_005261003 /// XM_006724021 /// XM_006724022 /// XM_006724023 /// XR_244283 /// XR_430350 0032259 // methylation // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 16.95 45.17 1.19 0.27 0.35 -4.59
213366_x_at 213366_x_at AV711183 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV711183 /FEA=EST /DB_XREF=gi:10730489 /DB_XREF=est:AV711183 /CLONE=CuAAOG09 /UG=Hs.155433 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 AV711183 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 ATP5C1 509 NM_001001973 /// NM_005174 0006119 // oxidative phosphorylation // non-traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // non-traceable author statement /// 0006754 // ATP biosynthetic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // non-traceable author statement /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // non-traceable author statement /// 0022857 // transmembrane transporter activity // inferred by curator /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation -87.22 1192.16 -1.19 0.27 0.35 -4.59
212077_at 212077_at AL583520 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL583520 /FEA=EST /DB_XREF=gi:12952562 /DB_XREF=est:AL583520 /CLONE=CS0DC024YE13 (5 prime) /UG=Hs.182183 Homo sapiens mRNA for caldesmon, 3 UTR AL583520 caldesmon 1 CALD1 800 NM_004342 /// NM_033138 /// NM_033139 /// NM_033140 /// NM_033157 /// XM_006716136 /// XM_006716137 /// XM_006716138 /// XM_006716139 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030478 // actin cap // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // traceable author statement /// 0017022 // myosin binding // inferred from electronic annotation -130.30 1447.05 -1.18 0.27 0.35 -4.59
200960_x_at 200960_x_at NM_007096 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007096.1 /DEF=Homo sapiens clathrin, light polypeptide (Lca) (CLTA), transcript variant brain-specific, mRNA. /FEA=mRNA /GEN=CLTA /PROD=clathrin, light polypeptide A (Lca) isoform b /DB_XREF=gi:6005992 /UG=Hs.104143 clathrin, light polypeptide (Lca) /FL=gb:M20471.1 gb:NM_007096.1 NM_007096 clathrin, light chain A CLTA 1211 NM_001076677 /// NM_001184760 /// NM_001184761 /// NM_001184762 /// NM_001833 /// NM_007096 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from sequence or structural similarity /// 0030118 // clathrin coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0071439 // clathrin complex // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032050 // clathrin heavy chain binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation 21.25 1002.20 1.18 0.27 0.35 -4.59
213867_x_at 213867_x_at AA809056 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA809056 /FEA=EST /DB_XREF=gi:2878462 /DB_XREF=est:nw17a02.s1 /CLONE=IMAGE:1240682 /UG=Hs.288061 actin, beta AA809056 actin, beta ACTB 60 NM_001101 /// XM_006715764 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -691.90 5177.38 -1.18 0.27 0.35 -4.59
210588_x_at 210588_x_at L32610 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L32610.1 /DEF=Homo sapiens ribonucleoprotein mRNA, complete cds. /FEA=mRNA /PROD=ribonucleoprotein /DB_XREF=gi:5542019 /UG=Hs.279681 heterogeneous nuclear ribonucleoprotein H3 (2H9) /FL=gb:L32610.1 L32610 heterogeneous nuclear ribonucleoprotein H3 (2H9) HNRNPH3 3189 NM_012207 /// NM_021644 /// XM_005269748 /// XM_005269749 /// XM_005269751 /// XM_005269752 /// XM_005269753 /// XM_005269754 /// XM_006717816 /// XM_006717817 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 51.80 285.23 1.18 0.27 0.35 -4.59
211971_s_at 211971_s_at AI653608 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI653608 /FEA=EST /DB_XREF=gi:4737587 /DB_XREF=est:tz21a06.x1 /CLONE=IMAGE:2289202 /UG=Hs.182490 leucine-rich protein mRNA AI653608 leucine-rich pentatricopeptide repeat containing LRPPRC 10128 NM_133259 /// XM_006711915 /// XM_006711916 0000961 // negative regulation of mitochondrial RNA catabolic process // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0070129 // regulation of mitochondrial translation // inferred from electronic annotation 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048487 // beta-tubulin binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from direct assay -45.77 444.99 -1.18 0.27 0.35 -4.59
201726_at 201726_at BC003376 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003376.1 /DEF=Homo sapiens, ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R), clone MGC:5084, mRNA, complete cds. /FEA=mRNA /PROD=ELAV (embryonic lethal, abnormal vision,Drosophila)-like 1 (Hu antigen R) /DB_XREF=gi:13097227 /UG=Hs.12379 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) /FL=gb:U38175.1 gb:BC003376.1 gb:NM_001419.1 BC003376 ELAV like RNA binding protein 1 ELAVL1 1994 NM_001419 /// XR_430131 0006417 // regulation of translation // inferred from mutant phenotype /// 0007275 // multicellular organismal development // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from direct assay /// 0048255 // mRNA stabilization // inferred from direct assay /// 0048255 // mRNA stabilization // inferred from mutant phenotype /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from mutant phenotype /// 2000036 // regulation of stem cell maintenance // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003729 // mRNA binding // traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0017091 // AU-rich element binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0035925 // mRNA 3'-UTR AU-rich region binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 51.90 617.20 1.18 0.27 0.36 -4.59
202422_s_at 202422_s_at NM_022977 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022977.1 /DEF=Homo sapiens fatty-acid-Coenzyme A ligase, long-chain 4 (FACL4), transcript variant 2, mRNA. /FEA=mRNA /GEN=FACL4 /PROD=long-chain fatty-acid-Coenzyme A ligase 4,isoform 2 /DB_XREF=gi:12669908 /UG=Hs.81452 fatty-acid-Coenzyme A ligase, long-chain 4 /FL=gb:NM_022977.1 NM_022977 acyl-CoA synthetase long-chain family member 4 ACSL4 2182 NM_004458 /// NM_022977 /// XM_005262108 /// XM_005262109 /// XM_005262110 /// XM_006724635 0001676 // long-chain fatty acid metabolic process // inferred from direct assay /// 0001676 // long-chain fatty acid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from direct assay /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from direct assay /// 0015908 // fatty acid transport // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0032307 // negative regulation of prostaglandin secretion // inferred from direct assay /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060996 // dendritic spine development // inferred from electronic annotation /// 0070672 // response to interleukin-15 // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031957 // very long-chain fatty acid-CoA ligase activity // inferred from mutant phenotype /// 0047676 // arachidonate-CoA ligase activity // inferred from direct assay 25.85 119.28 1.18 0.28 0.36 -4.59
200929_at 200929_at NM_006827 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006827.1 /DEF=Homo sapiens transmembrane trafficking protein (TMP21), mRNA. /FEA=mRNA /GEN=TMP21 /PROD=transmembrane trafficking protein /DB_XREF=gi:5803200 /UG=Hs.74137 transmembrane trafficking protein /FL=gb:BC001825.1 gb:NM_006827.1 NM_006827 transmembrane emp24-like trafficking protein 10 (yeast) TMED10 10972 NM_006827 0001101 // response to acid // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from direct assay /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0007030 // Golgi organization // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0034205 // beta-amyloid formation // inferred from mutant phenotype /// 0035459 // cargo loading into vesicle // traceable author statement /// 0035964 // COPI-coated vesicle budding // inferred from direct assay /// 0043279 // response to alkaloid // inferred from electronic annotation /// 0045055 // regulated secretory pathway // inferred from sequence or structural similarity /// 0048199 // vesicle targeting, to, from or within Golgi // inferred from sequence or structural similarity /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0051259 // protein oligomerization // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0030137 // COPI-coated vesicle // inferred from sequence or structural similarity /// 0030140 // trans-Golgi network transport vesicle // inferred from sequence or structural similarity /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0030667 // secretory granule membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070765 // gamma-secretase complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation -85.60 509.48 -1.18 0.28 0.36 -4.59
200981_x_at 200981_x_at NM_016592 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016592.1 /DEF=Homo sapiens neuroendocrine secretory protein 55 (NESP55), mRNA. /FEA=mRNA /GEN=NESP55 /PROD=neuroendocrine secretory protein 55 /DB_XREF=gi:7706588 /UG=Hs.113368 neuroendocrine secretory protein 55 /FL=gb:AF105253.1 gb:NM_016592.1 NM_016592 GNAS complex locus GNAS 2778 NM_000516 /// NM_001077488 /// NM_001077489 /// NM_001077490 /// NM_016592 /// NM_080425 /// NM_080426 /// NR_003259 /// XM_005260401 /// XM_005260402 /// XM_006723781 /// XM_006723782 0001501 // skeletal system development // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006171 // cAMP biosynthetic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007190 // activation of adenylate cyclase activity // traceable author statement /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // not recorded /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007565 // female pregnancy // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007606 // sensory perception of chemical stimulus // not recorded /// 0007608 // sensory perception of smell // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0009306 // protein secretion // non-traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040032 // post-embryonic body morphogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0046907 // intracellular transport // non-traceable author statement /// 0048589 // developmental growth // inferred from direct assay /// 0048589 // developmental growth // inferred from mutant phenotype /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050890 // cognition // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0051216 // cartilage development // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060348 // bone development // inferred from direct assay /// 0060348 // bone development // inferred from mutant phenotype /// 0060789 // hair follicle placode formation // inferred from direct assay /// 0060789 // hair follicle placode formation // inferred from mutant phenotype /// 0070527 // platelet aggregation // inferred from direct assay /// 0070527 // platelet aggregation // inferred from mutant phenotype /// 0071107 // response to parathyroid hormone // inferred from mutant phenotype /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071514 // genetic imprinting // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity /// 0071880 // adenylate cyclase-activating adrenergic receptor signaling pathway // inferred from direct assay 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0004016 // adenylate cyclase activity // traceable author statement /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from direct assay /// 0005159 // insulin-like growth factor receptor binding // /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // /// 0031748 // D1 dopamine receptor binding // /// 0031852 // mu-type opioid receptor binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051430 // corticotropin-releasing hormone receptor 1 binding // -341.93 2284.91 -1.18 0.28 0.36 -4.59
203215_s_at 203215_s_at AA877789 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA877789 /FEA=EST /DB_XREF=gi:2986754 /DB_XREF=est:nr06h10.s1 /CLONE=IMAGE:1161091 /UG=Hs.22564 myosin VI /FL=gb:AB002387.1 gb:NM_004999.1 AA877789 myosin VI MYO6 4646 NM_004999 /// XM_005248719 /// XM_005248720 /// XM_005248721 /// XM_005248722 /// XM_005248724 /// XM_005248725 /// XM_005248726 0006605 // protein targeting // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0007268 // synaptic transmission // traceable author statement /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from sequence or structural similarity /// 0008152 // metabolic process // non-traceable author statement /// 0014047 // glutamate secretion // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0030048 // actin filament-based movement // inferred from sequence or structural similarity /// 0030048 // actin filament-based movement // non-traceable author statement /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 0051046 // regulation of secretion // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0071257 // cellular response to electrical stimulus // inferred from electronic annotation 0001726 // ruffle // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005902 // microvillus // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005938 // cell cortex // inferred from sequence or structural similarity /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0016461 // unconventional myosin complex // traceable author statement /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from direct assay /// 0031941 // filamentous actin // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from direct assay /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045334 // clathrin-coated endocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0005516 // calmodulin binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0043531 // ADP binding // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from sequence or structural similarity /// 0060001 // minus-end directed microfilament motor activity // non-traceable author statement -18.97 104.69 -1.18 0.28 0.36 -4.59
215179_x_at 215179_x_at AK023843 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023843.1 /DEF=Homo sapiens cDNA FLJ13781 fis, clone PLACE4000465. /FEA=mRNA /DB_XREF=gi:10435902 /UG=Hs.252820 Homo sapiens cDNA FLJ13781 fis, clone PLACE4000465 AK023843 placental growth factor PGF 5228 NM_001207012 /// NM_001293643 /// NM_002632 /// XM_005267761 0001525 // angiogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from mutant phenotype /// 0008201 // heparin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 32.08 165.11 1.18 0.28 0.36 -4.59
200751_s_at 200751_s_at BE898861 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE898861 /FEA=EST /DB_XREF=gi:10365758 /DB_XREF=est:601682157F1 /CLONE=IMAGE:3952046 /UG=Hs.182447 heterogeneous nuclear ribonucleoprotein C (C1C2) /FL=gb:BC003394.1 gb:M16342.1 gb:NM_004500.1 BE898861 heterogeneous nuclear ribonucleoprotein C (C1/C2) HNRNPC 3183 NM_001077442 /// NM_001077443 /// NM_004500 /// NM_031314 /// XM_006720124 /// XM_006720125 /// XM_006720126 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045120 // pronucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -79.17 346.16 -1.17 0.28 0.36 -4.59
209313_at 209313_at AB044661 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB044661.1 /DEF=Homo sapiens XAB1 mRNA for XPA binding protein 1, complete cds. /FEA=mRNA /GEN=XAB1 /PROD=XPA binding protein 1 /DB_XREF=gi:11094140 /UG=Hs.18259 XPA binding protein 1; putative ATP(GTP)-binding protein /FL=gb:AB044661.1 AB044661 GPN-loop GTPase 1 GPN1 11321 NM_001145047 /// NM_001145048 /// NM_001145049 /// NM_007266 /// NR_026735 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0051457 // maintenance of protein location in nucleus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030914 // STAGA complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 38.98 201.86 1.17 0.28 0.36 -4.59
200741_s_at 200741_s_at NM_001030 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001030.1 /DEF=Homo sapiens ribosomal protein S27 (metallopanstimulin 1) (RPS27), mRNA. /FEA=mRNA /GEN=RPS27 /PROD=ribosomal protein S27 (metallopanstimulin 1) /DB_XREF=gi:4506710 /UG=Hs.195453 ribosomal protein S27 (metallopanstimulin 1) /FL=gb:U57847.1 gb:L19739.1 gb:NM_001030.1 NM_001030 ribosomal protein S27 RPS27 6232 NM_001030 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0008283 // cell proliferation // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // non-traceable author statement /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -223.65 2829.78 -1.17 0.28 0.36 -4.59
201950_x_at 201950_x_at NM_004930 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004930.1 /DEF=Homo sapiens capping protein (actin filament) muscle Z-line, beta (CAPZB), mRNA. /FEA=mRNA /GEN=CAPZB /PROD=F-actin capping protein beta subunit /DB_XREF=gi:4826658 /UG=Hs.76368 capping protein (actin filament) muscle Z-line, beta /FL=gb:NM_004930.1 gb:U03271.1 NM_004930 capping protein (actin filament) muscle Z-line, beta CAPZB 832 NM_001206540 /// NM_001206541 /// NM_001282162 /// NM_004930 /// XM_006710938 0006928 // cellular component movement // traceable author statement /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0048747 // muscle fiber development // inferred from electronic annotation /// 0051016 // barbed-end actin filament capping // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation /// 0090036 // regulation of protein kinase C signaling // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071203 // WASH complex // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation -58.75 469.12 -1.17 0.28 0.36 -4.59
203430_at 203430_at NM_014320 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014320.1 /DEF=Homo sapiens putative heme-binding protein (SOUL), mRNA. /FEA=mRNA /GEN=SOUL /PROD=putative heme-binding protein /DB_XREF=gi:7657602 /UG=Hs.111029 putative heme-binding protein /FL=gb:AF117616.1 gb:NM_014320.1 NM_014320 heme binding protein 2 HEBP2 23593 NM_014320 0010917 // negative regulation of mitochondrial membrane potential // inferred from mutant phenotype /// 0010940 // positive regulation of necrotic cell death // inferred from mutant phenotype /// 0035794 // positive regulation of mitochondrial membrane permeability // inferred from mutant phenotype /// 1901031 // regulation of response to reactive oxygen species // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 31.20 389.77 1.17 0.28 0.36 -4.59
218839_at 218839_at NM_012258 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012258.1 /DEF=Homo sapiens hairyenhancer-of-split related with YRPW motif 1 (HEY1), mRNA. /FEA=mRNA /GEN=HEY1 /PROD=hairyenhancer-of-split related with YRPW motif1 /DB_XREF=gi:6912411 /UG=Hs.234434 hairyenhancer-of-split related with YRPW motif 1 /FL=gb:AF311883.1 gb:BC001873.1 gb:AF151522.1 gb:AF176422.1 gb:NM_012258.1 gb:AF232239.1 NM_012258 hes-related family bHLH transcription factor with YRPW motif 1 HEY1 23462 NM_001040708 /// NM_001282851 /// NM_012258 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from expression pattern /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0002076 // osteoblast development // inferred from electronic annotation /// 0003184 // pulmonary valve morphogenesis // inferred from sequence or structural similarity /// 0003190 // atrioventricular valve formation // inferred from sequence or structural similarity /// 0003198 // epithelial to mesenchymal transition involved in endocardial cushion formation // inferred from sequence or structural similarity /// 0003199 // endocardial cushion to mesenchymal transition involved in heart valve formation // inferred from electronic annotation /// 0003203 // endocardial cushion morphogenesis // inferred from sequence or structural similarity /// 0003208 // cardiac ventricle morphogenesis // inferred from sequence or structural similarity /// 0003222 // ventricular trabecula myocardium morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from direct assay /// 0007219 // Notch signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0035912 // dorsal aorta morphogenesis // inferred from sequence or structural similarity /// 0036304 // umbilical cord morphogenesis // inferred from sequence or structural similarity /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0060347 // heart trabecula formation // inferred from sequence or structural similarity /// 0060411 // cardiac septum morphogenesis // inferred from sequence or structural similarity /// 0060412 // ventricular septum morphogenesis // inferred from sequence or structural similarity /// 0060716 // labyrinthine layer blood vessel development // inferred from sequence or structural similarity /// 0060840 // artery development // inferred from electronic annotation /// 0060842 // arterial endothelial cell differentiation // inferred from sequence or structural similarity /// 0061314 // Notch signaling involved in heart development // inferred by curator /// 0071385 // cellular response to glucocorticoid stimulus // inferred from electronic annotation /// 2000678 // negative regulation of transcription regulatory region DNA binding // inferred from direct assay /// 2000820 // negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation // inferred from direct assay /// 2001212 // regulation of vasculogenesis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0000983 // RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0000988 // protein binding transcription factor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // non-traceable author statement /// 0035939 // microsatellite binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -15.32 26.06 -1.17 0.28 0.36 -4.59
201343_at 201343_at BE621259 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE621259 /FEA=EST /DB_XREF=gi:9892197 /DB_XREF=est:601493415F1 /CLONE=IMAGE:3895850 /UG=Hs.108332 ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC45) /FL=gb:U39317.1 gb:NM_003339.1 BE621259 ubiquitin-conjugating enzyme E2D 2 UBE2D2 7322 NM_003339 /// NM_181838 0000209 // protein polyubiquitination // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 55.18 439.29 1.17 0.28 0.36 -4.59
214730_s_at 214730_s_at AK025457 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025457.1 /DEF=Homo sapiens cDNA: FLJ21804 fis, clone HEP00746, highly similar to HSU64791 Human Golgi membrane sialoglycoprotein MG160 (GLG1) mRNA. /FEA=mRNA /DB_XREF=gi:10437977 /UG=Hs.78979 Golgi apparatus protein 1 AK025457 golgi glycoprotein 1 GLG1 2734 NM_001145666 /// NM_001145667 /// NM_012201 /// NR_027264 /// NR_027265 0007596 // blood coagulation // traceable author statement /// 0010955 // negative regulation of protein processing // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0060349 // bone morphogenesis // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // traceable author statement -22.38 377.61 -1.17 0.28 0.36 -4.59
204805_s_at 204805_s_at NM_006026 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006026.1 /DEF=Homo sapiens H1 histone family, member X (H1FX), mRNA. /FEA=mRNA /GEN=H1FX /PROD=H1 histone family, member X /DB_XREF=gi:5174448 /UG=Hs.109804 H1 histone family, member X /FL=gb:BC000426.1 gb:D64142.1 gb:NM_006026.1 NM_006026 H1 histone family, member X H1FX 8971 NM_006026 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 28.30 144.80 1.17 0.28 0.36 -4.59
200736_s_at 200736_s_at NM_000581 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000581.1 /DEF=Homo sapiens glutathione peroxidase 1 (GPX1), mRNA. /FEA=mRNA /GEN=GPX1 /PROD=glutathione peroxidase 1 /DB_XREF=gi:10834975 /UG=Hs.76686 glutathione peroxidase 1 /FL=gb:NM_000581.1 gb:BC000742.1 gb:M21304.1 NM_000581 glutathione peroxidase 1 GPX1 2876 NM_000581 /// NM_201397 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001885 // endothelial cell development // inferred from electronic annotation /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006195 // purine nucleotide catabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006982 // response to lipid hydroperoxide // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation /// 0009410 // response to xenobiotic stimulus // inferred from electronic annotation /// 0009609 // response to symbiotic bacterium // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0009650 // UV protection // inferred from mutant phenotype /// 0009725 // response to hormone // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0010269 // response to selenium ion // inferred from mutant phenotype /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014902 // myotube differentiation // inferred from electronic annotation /// 0018158 // protein oxidation // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0019372 // lipoxygenase pathway // traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033194 // response to hydroperoxide // inferred from electronic annotation /// 0033599 // regulation of mammary gland epithelial cell proliferation // inferred from mutant phenotype /// 0035094 // response to nicotine // inferred from electronic annotation /// 0040029 // regulation of gene expression, epigenetic // inferred from direct assay /// 0042311 // vasodilation // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from mutant phenotype /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043403 // skeletal muscle tissue regeneration // inferred from electronic annotation /// 0043523 // regulation of neuron apoptotic process // inferred from electronic annotation /// 0043534 // blood vessel endothelial cell migration // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from direct assay /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0051450 // myoblast proliferation // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from electronic annotation /// 0051702 // interaction with symbiont // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060047 // heart contraction // inferred from mutant phenotype /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0061136 // regulation of proteasomal protein catabolic process // inferred from direct assay /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // traceable author statement /// 0004866 // endopeptidase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008430 // selenium binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0043295 // glutathione binding // inferred from electronic annotation /// 0047066 // phospholipid-hydroperoxide glutathione peroxidase activity // inferred from electronic annotation 141.45 790.85 1.17 0.28 0.36 -4.59
202334_s_at 202334_s_at AI768723 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI768723 /FEA=EST /DB_XREF=gi:5235232 /DB_XREF=est:wh25c12.x1 /CLONE=IMAGE:2381782 /UG=Hs.811 ubiquitin-conjugating enzyme E2B (RAD6 homolog) /FL=gb:M74525.1 gb:NM_003337.1 AI768723 ubiquitin-conjugating enzyme E2B UBE2B 7320 NM_003337 0000209 // protein polyubiquitination // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006281 // DNA repair // inferred from genetic interaction /// 0006301 // postreplication repair // inferred from direct assay /// 0006301 // postreplication repair // non-traceable author statement /// 0006344 // maintenance of chromatin silencing // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006513 // protein monoubiquitination // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007283 // spermatogenesis // traceable author statement /// 0007288 // sperm axoneme assembly // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009411 // response to UV // inferred from genetic interaction /// 0010845 // positive regulation of reciprocal meiotic recombination // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031056 // regulation of histone modification // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0033128 // negative regulation of histone phosphorylation // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // inferred from mutant phenotype /// 0042493 // response to drug // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043951 // negative regulation of cAMP-mediated signaling // inferred from direct assay /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0051026 // chiasma assembly // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0070076 // histone lysine demethylation // inferred from electronic annotation /// 0070193 // synaptonemal complex organization // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0000785 // chromatin // inferred from sequence or structural similarity /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0001741 // XY body // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005657 // replication fork // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033503 // HULC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -23.88 151.06 -1.17 0.28 0.36 -4.59
200682_s_at 200682_s_at BG531983 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG531983 /FEA=EST /DB_XREF=gi:13523521 /DB_XREF=est:602561007F1 /CLONE=IMAGE:4699176 /UG=Hs.108104 ubiquitin-conjugating enzyme E2L 3 /FL=gb:NM_003347.1 BG531983 ubiquitin-conjugating enzyme E2L 3 UBE2L3 7332 NM_001256355 /// NM_001256356 /// NM_003347 /// NM_198157 /// NR_028436 /// NR_046082 0000209 // protein polyubiquitination // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0071383 // cellular response to steroid hormone stimulus // inferred from mutant phenotype /// 0071385 // cellular response to glucocorticoid stimulus // inferred from direct assay 0000151 // ubiquitin ligase complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 49.57 818.81 1.17 0.28 0.36 -4.59
217266_at 217266_at Z97353 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z97353 /DEF=Human DNA sequence from clone RP1-90L6 on chromosome 22q11.21-11.23 Contains an RPL15 (60S Ribosomal Protein L15) pseudogene, ESTs, STSs and GSSs /FEA=CDS /DB_XREF=gi:4455632 /UG=Hs.247851 Human DNA sequence from clone RP1-90L6 on chromosome 22q11.21-11.23 Contains an RPL15 (60S Ribosomal Protein L15) pseudogene, ESTs, STSs and GSSs Z97353 ribosomal protein L15 RPL15 6138 NM_001253379 /// NM_001253380 /// NM_001253382 /// NM_001253383 /// NM_001253384 /// NM_002948 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -31.18 137.06 -1.17 0.28 0.36 -4.59
202058_s_at 202058_s_at BC002374 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002374.1 /DEF=Homo sapiens, karyopherin alpha 1 (importin alpha 5), clone MGC:8554, mRNA, complete cds. /FEA=mRNA /PROD=karyopherin alpha 1 (importin alpha 5) /DB_XREF=gi:12803140 /UG=Hs.169149 karyopherin alpha 1 (importin alpha 5) /FL=gb:BC002374.1 gb:BC003009.1 gb:NM_002264.1 BC002374 karyopherin alpha 1 (importin alpha 5) KPNA1 3836 NM_002264 /// NR_026698 /// XM_005247437 /// XM_005247439 0000018 // regulation of DNA recombination // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0042307 // positive regulation of protein import into nucleus // inferred from sequence or structural similarity /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030425 // dendrite // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008565 // protein transporter activity // inferred from electronic annotation -23.43 119.11 -1.17 0.28 0.36 -4.59
213399_x_at 213399_x_at AI560720 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI560720 /FEA=EST /DB_XREF=gi:4511061 /DB_XREF=est:tq55e12.x1 /CLONE=IMAGE:2212750 /UG=Hs.75722 ribophorin II AI560720 ribophorin II RPN2 6185 NM_001135771 /// NM_002951 /// XM_005260491 /// XM_006723849 /// XM_006723850 /// XM_006723851 /// XM_006723852 0006412 // translation // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // non-traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from electronic annotation -150.40 1282.08 -1.17 0.28 0.36 -4.59
208827_at 208827_at BC000835 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000835.1 /DEF=Homo sapiens, Similar to proteasome (prosome, macropain) subunit, beta type 6, clone MGC:5169, mRNA, complete cds. /FEA=mRNA /PROD=Similar to proteasome (prosome, macropain)subunit, beta type 6 /DB_XREF=gi:12654058 /UG=Hs.77060 proteasome (prosome, macropain) subunit, beta type, 6 /FL=gb:BC000835.1 gb:D29012.1 BC000835 proteasome (prosome, macropain) subunit, beta type, 6 PSMB6 5694 NM_001270481 /// NM_002798 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // non-traceable author statement /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -34.80 469.50 -1.17 0.28 0.36 -4.59
204281_at 204281_at NM_003213 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003213.1 /DEF=Homo sapiens TEA domain family member 4 (TEAD4), mRNA. /FEA=mRNA /GEN=TEAD4 /PROD=TEA domain family member 4 /DB_XREF=gi:4507426 /UG=Hs.94865 TEA domain family member 4 /FL=gb:U63824.1 gb:NM_003213.1 NM_003213 TEA domain family member 4 TEAD4 7004 NM_003213 /// NM_201441 /// NM_201443 0001501 // skeletal system development // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001825 // blastocyst formation // inferred from electronic annotation /// 0001830 // trophectodermal cell fate commitment // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007517 // muscle organ development // traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0035329 // hippo signaling // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 15.33 127.01 1.16 0.28 0.36 -4.59
31837_at 31837_at U62317 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. U62317:Chromosome 22q13 BAC Clone CIT987SK-384D8 complete sequence /cds=(0,1739) /gb=U62317 /gi=1399959 /ug=Hs.150540 /len=2557 U62317 lipase maturation factor 2 LMF2 91289 NM_033200 /// XM_005261955 /// XM_006724426 /// XM_006724427 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 24.15 185.57 1.16 0.28 0.36 -4.59
221253_s_at 221253_s_at NM_030810 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030810.1 /DEF=Homo sapiens hypothetical protein MGC3178 (MGC3178), mRNA. /FEA=mRNA /GEN=MGC3178 /PROD=hypothetical protein MGC3178 /DB_XREF=gi:13540603 /FL=gb:NM_030810.1 NM_030810 BLOC1S5-TXNDC5 readthrough (NMD candidate) /// thioredoxin domain containing 5 (endoplasmic reticulum) BLOC1S5-TXNDC5 /// TXNDC5 81567 /// 100526836 NM_001145549 /// NM_022085 /// NM_030810 /// NR_037616 0006457 // protein folding // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043277 // apoptotic cell clearance // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0031083 // BLOC-1 complex // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation -291.60 3765.85 -1.16 0.28 0.36 -4.59
202205_at 202205_at NM_003370 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003370.1 /DEF=Homo sapiens vasodilator-stimulated phosphoprotein (VASP), mRNA. /FEA=mRNA /GEN=VASP /PROD=vasodilator-stimulated phosphoprotein /DB_XREF=gi:4507868 /UG=Hs.93183 vasodilator-stimulated phosphoprotein /FL=gb:NM_003370.1 NM_003370 vasodilator-stimulated phosphoprotein VASP 7408 NM_001008736 /// NM_003370 /// XM_005259199 /// XM_005259200 0001843 // neural tube closure // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0008154 // actin polymerization or depolymerization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from direct assay /// 0034329 // cell junction assembly // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0031527 // filopodium membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005522 // profilin binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation -36.62 163.14 -1.16 0.28 0.36 -4.59
202001_s_at 202001_s_at NM_002490 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002490.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (14kD, B14) (NDUFA6), mRNA. /FEA=mRNA /GEN=NDUFA6 /PROD=NADH dehydrogenase (ubiquinone) 1 alphasubcomplex, 6 (14kD, B14) /DB_XREF=gi:4505358 /UG=Hs.274416 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (14kD, B14) /FL=gb:BC002772.1 gb:AF047182.1 gb:NM_002490.1 NM_002490 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa NDUFA6 4700 NM_002490 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006979 // response to oxidative stress // inferred from direct assay /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 33.72 349.06 1.16 0.28 0.36 -4.59
208833_s_at 208833_s_at AF119662 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF119662.1 /DEF=Homo sapiens E46 protein mRNA, complete cds. /FEA=mRNA /PROD=E46 protein /DB_XREF=gi:6563249 /UG=Hs.13493 like mouse brain protein E46 /FL=gb:AL050282.1 gb:AF119662.1 gb:NM_013236.1 AF119662 ataxin 10 ATXN10 25814 NM_001167621 /// NM_013236 0007399 // nervous system development // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation 114.47 765.86 1.16 0.28 0.36 -4.59
217737_x_at 217737_x_at NM_016407 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016407.1 /DEF=Homo sapiens hypothetical protein (HSPC164), mRNA. /FEA=mRNA /GEN=HSPC164 /PROD=hypothetical protein /DB_XREF=gi:7705482 /UG=Hs.182281 hypothetical protein /FL=gb:BC003359.1 gb:AF212244.1 gb:AF117231.1 gb:AF161513.1 gb:AF161518.1 gb:NM_016407.1 NM_016407 replication termination factor 2 domain containing 1 RTFDC1 51507 NM_001283035 /// NM_001283036 /// NM_001283037 /// NM_016407 24.10 202.40 1.16 0.28 0.36 -4.59
217816_s_at 217816_s_at NM_020357 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020357.1 /DEF=Homo sapiens PEST-containing nuclear protein (pcnp), mRNA. /FEA=mRNA /GEN=pcnp /PROD=PEST-containing nuclear protein /DB_XREF=gi:9966826 /UG=Hs.283728 PEST-containing nuclear protein /FL=gb:AB037675.1 gb:NM_020357.1 NM_020357 PEST proteolytic signal containing nuclear protein PCNP 57092 NM_020357 0007049 // cell cycle // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 63.75 519.95 1.16 0.28 0.36 -4.59
200997_at 200997_at NM_002896 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002896.1 /DEF=Homo sapiens RNA binding motif protein 4 (RBM4), mRNA. /FEA=mRNA /GEN=RBM4 /PROD=RNA binding motif protein 4 /DB_XREF=gi:4506444 /UG=Hs.6106 RNA binding motif protein 4 /FL=gb:BC000307.1 gb:U89505.1 gb:NM_002896.1 NM_002896 RBM14-RBM4 readthrough /// RNA binding motif protein 4 RBM14-RBM4 /// RBM4 5936 /// 100526737 NM_001198843 /// NM_001198844 /// NM_001198845 /// NM_001198846 /// NM_002896 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0002190 // cap-independent translational initiation // inferred from direct assay /// 0002192 // IRES-dependent translational initiation // inferred from direct assay /// 0006260 // DNA replication // non-traceable author statement /// 0006281 // DNA repair // non-traceable author statement /// 0006310 // DNA recombination // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // non-traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009725 // response to hormone // traceable author statement /// 0016575 // histone deacetylation // inferred from physical interaction /// 0017148 // negative regulation of translation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030520 // intracellular estrogen receptor signaling pathway // non-traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0032055 // negative regulation of translation in response to stress // inferred from direct assay /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // inferred from direct assay /// 0042921 // glucocorticoid receptor signaling pathway // non-traceable author statement /// 0043153 // entrainment of circadian clock by photoperiod // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045947 // negative regulation of translational initiation // inferred from direct assay /// 0046685 // response to arsenic-containing substance // inferred from direct assay /// 0046822 // regulation of nucleocytoplasmic transport // inferred from direct assay /// 0051149 // positive regulation of muscle cell differentiation // inferred from direct assay /// 0051403 // stress-activated MAPK cascade // inferred from direct assay /// 0097167 // circadian regulation of translation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005667 // transcription factor complex // inferred from physical interaction /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016592 // mediator complex // non-traceable author statement /// 0016607 // nuclear speck // inferred from direct assay /// 0030529 // ribonucleoprotein complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0001104 // RNA polymerase II transcription cofactor activity // non-traceable author statement /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from physical interaction /// 0030674 // protein binding, bridging // non-traceable author statement /// 0035198 // miRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0097157 // pre-mRNA intronic binding // inferred from direct assay /// 0097158 // pre-mRNA intronic pyrimidine-rich binding // inferred from direct assay 34.00 219.60 1.16 0.28 0.36 -4.59
212794_s_at 212794_s_at AK001728 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001728.1 /DEF=Homo sapiens cDNA FLJ10866 fis, clone NT2RP4001614. /FEA=mRNA /DB_XREF=gi:7023169 /UG=Hs.12144 KIAA1033 protein AK001728 KIAA1033 KIAA1033 23325 NM_001293640 /// NM_015275 /// XM_005268742 /// XM_005268743 /// XM_005268744 /// XM_005268745 /// XM_005268746 /// XR_245916 0016197 // endosomal transport // inferred from mutant phenotype /// 0016197 // endosomal transport // inferred from sequence or structural similarity 0005768 // endosome // inferred from direct assay /// 0071203 // WASH complex // inferred from direct assay 51.60 259.98 1.16 0.28 0.36 -4.59
208994_s_at 208994_s_at AI638762 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI638762 /FEA=EST /DB_XREF=gi:4690996 /DB_XREF=est:tt32a04.x1 /CLONE=IMAGE:2242446 /UG=Hs.77965 peptidyl-prolyl isomerase G (cyclophilin G) /FL=gb:U40763.1 gb:NM_004792.1 AI638762 peptidylprolyl isomerase G (cyclophilin G) PPIG 9360 NM_004792 /// XM_005246966 /// XM_005246967 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016018 // cyclosporin A binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 19.45 152.30 1.15 0.28 0.37 -4.59
202689_at 202689_at NM_013286 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013286.1 /DEF=Homo sapiens chromosome 3p21.1 gene sequence (HUMAGCGB), mRNA. /FEA=mRNA /GEN=HUMAGCGB /PROD=chromosome 3p21.1 gene sequence /DB_XREF=gi:7110644 /UG=Hs.84162 chromosome 3p21.1 gene sequence /FL=gb:BC001367.1 gb:L13434.1 gb:NM_013286.1 NM_013286 RNA binding motif protein 15B RBM15B 29890 NM_013286 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -25.65 214.50 -1.15 0.29 0.37 -4.59
222182_s_at 222182_s_at BG105204 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG105204 /FEA=EST /DB_XREF=gi:12599050 /DB_XREF=est:602312951F1 /CLONE=IMAGE:4422541 /UG=Hs.239720 CCR4-NOT transcription complex, subunit 2 BG105204 CCR4-NOT transcription complex, subunit 2 CNOT2 4848 NM_001199302 /// NM_001199303 /// NM_014515 /// NR_037615 /// XM_006719429 /// XM_006719430 /// XM_006719431 /// XM_006719432 /// XM_006719433 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010606 // positive regulation of cytoplasmic mRNA processing body assembly // inferred from mutant phenotype /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0033147 // negative regulation of intracellular estrogen receptor signaling pathway // inferred from mutant phenotype /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // inferred from mutant phenotype /// 2000036 // regulation of stem cell maintenance // inferred from mutant phenotype 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030014 // CCR4-NOT complex // inferred from direct assay 0001104 // RNA polymerase II transcription cofactor activity // traceable author statement /// 0001226 // RNA polymerase II transcription corepressor binding // inferred from direct assay /// 0004535 // poly(A)-specific ribonuclease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction -26.08 187.86 -1.15 0.29 0.37 -4.59
201073_s_at 201073_s_at AL040633 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL040633 /FEA=EST /DB_XREF=gi:5409580 /DB_XREF=est:DKFZp434M2414_s1 /CLONE=DKFZp434M2414 /UG=Hs.172280 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 /FL=gb:U66615.1 gb:NM_003074.1 AL040633 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 SMARCC1 6599 NM_003074 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0001741 // XY body // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction 26.28 150.61 1.15 0.29 0.37 -4.59
212112_s_at 212112_s_at AI816243 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI816243 /FEA=EST /DB_XREF=gi:5431789 /DB_XREF=est:au46a11.x1 /CLONE=IMAGE:2517788 /UG=Hs.106823 H.sapiens gene from PAC 426I6, similar to syntaxin 7 AI816243 syntaxin 12 STX12 23673 NM_177424 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0033344 // cholesterol efflux // inferred from direct assay /// 0050821 // protein stabilization // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031083 // BLOC-1 complex // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000149 // SNARE binding // not recorded /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction -67.20 453.73 -1.15 0.29 0.37 -4.59
221827_at 221827_at BE788439 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE788439 /FEA=EST /DB_XREF=gi:10209637 /DB_XREF=est:601475616F1 /CLONE=IMAGE:3878643 /UG=Hs.247280 HBV associated factor BE788439 RanBP-type and C3HC4-type zinc finger containing 1 RBCK1 10616 NM_006462 /// NM_031227 /// NM_031228 /// NM_031229 /// XM_005260645 /// XM_005260646 /// XM_005260649 /// XR_430266 /// XR_430267 0000209 // protein polyubiquitination // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0097039 // protein linear polyubiquitination // inferred from direct assay /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0071797 // LUBAC complex // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -19.53 222.39 -1.14 0.29 0.37 -4.59
208699_x_at 208699_x_at BF696840 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF696840 /FEA=EST /DB_XREF=gi:11982248 /DB_XREF=est:602125377F1 /CLONE=IMAGE:4282458 /UG=Hs.89643 transketolase (Wernicke-Korsakoff syndrome) /FL=gb:U55017.1 gb:L12711.1 gb:NM_001064.1 BF696840 transketolase TKT 7086 NM_001064 /// NM_001135055 /// NM_001135056 /// NM_001258028 /// NR_047579 /// NR_047580 /// XM_006713319 0005975 // carbohydrate metabolic process // traceable author statement /// 0005999 // xylulose biosynthetic process // traceable author statement /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009052 // pentose-phosphate shunt, non-oxidative branch // non-traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046166 // glyceraldehyde-3-phosphate biosynthetic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004802 // transketolase activity // not recorded /// 0004802 // transketolase activity // inferred from direct assay /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from direct assay -94.55 698.52 -1.14 0.29 0.37 -4.59
213214_x_at 213214_x_at AW190090 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW190090 /FEA=EST /DB_XREF=gi:6464570 /DB_XREF=est:xl59a03.x1 /CLONE=IMAGE:2678956 /UG=Hs.14376 actin, gamma 1 AW190090 actin, beta /// actin, gamma 1 ACTB /// ACTG1 60 /// 71 NM_001101 /// NM_001199954 /// NM_001614 /// NR_037688 /// XM_006715764 /// XM_006722048 /// XM_006722049 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -579.98 5329.96 -1.14 0.29 0.37 -4.59
52255_s_at 52255_s_at AI984221 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI984221:wz57c09.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2562160 /clone_end=3' /gb=AI984221 /gi=5811440 /ug=Hs.235368 /len=515 AI984221 collagen, type V, alpha 3 COL5A3 50509 NM_015719 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // non-traceable author statement /// 0030574 // collagen catabolic process // traceable author statement /// 0043588 // skin development // non-traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005588 // collagen type V trimer // non-traceable author statement /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005518 // collagen binding // non-traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0043394 // proteoglycan binding // inferred from electronic annotation -15.25 29.77 -1.14 0.29 0.37 -4.59
200846_s_at 200846_s_at NM_002708 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002708.1 /DEF=Homo sapiens protein phosphatase 1, catalytic subunit, alpha isoform (PPP1CA), mRNA. /FEA=mRNA /GEN=PPP1CA /PROD=protein phosphatase 1, catalytic subunit, alphaisoform /DB_XREF=gi:4506002 /UG=Hs.183994 protein phosphatase 1, catalytic subunit, alpha isoform /FL=gb:BC001888.1 gb:BC004482.1 gb:M63960.1 gb:NM_002708.1 NM_002708 protein phosphatase 1, catalytic subunit, alpha isozyme PPP1CA 5499 NM_001008709 /// NM_002708 /// NM_206873 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0005981 // regulation of glycogen catabolic process // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // inferred from mutant phenotype /// 0043153 // entrainment of circadian clock by photoperiod // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0046822 // regulation of nucleocytoplasmic transport // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0000164 // protein phosphatase type 1 complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0042587 // glycogen granule // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from sequence or structural similarity /// 0043021 // ribonucleoprotein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 24.80 322.57 1.14 0.29 0.37 -4.59
203324_s_at 203324_s_at NM_001233 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001233.1 /DEF=Homo sapiens caveolin 2 (CAV2), mRNA. /FEA=mRNA /GEN=CAV2 /PROD=caveolin 2 /DB_XREF=gi:4557412 /UG=Hs.139851 caveolin 2 /FL=gb:BC005256.1 gb:AF035752.1 gb:NM_001233.1 NM_001233 caveolin 2 CAV2 858 NM_001206747 /// NM_001206748 /// NM_001233 /// NM_198212 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006906 // vesicle fusion // inferred from direct assay /// 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007088 // regulation of mitosis // inferred from expression pattern /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0016050 // vesicle organization // inferred from direct assay /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0048278 // vesicle docking // inferred from direct assay /// 0048741 // skeletal muscle fiber development // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from mutant phenotype /// 0070836 // caveola assembly // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0002080 // acrosomal membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030133 // transport vesicle // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000149 // SNARE binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0031748 // D1 dopamine receptor binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from electronic annotation 65.83 557.01 1.14 0.29 0.37 -4.59
48612_at 48612_at AA225490 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA225490:nc25b01.r1 Homo sapiens cDNA /clone=IMAGE-1009129 /gb=AA225490 /gi=1846817 /ug=Hs.80115 /len=539 AA225490 NEDD4 binding protein 1 N4BP1 9683 NM_153029 /// XM_005256262 /// XM_006721351 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0034644 // cellular response to UV // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction -51.70 293.25 -1.14 0.29 0.37 -4.59
219061_s_at 219061_s_at NM_006014 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006014.1 /DEF=Homo sapiens DNA segment on chromosome X (unique) 9879 expressed sequence (DXS9879E), mRNA. /FEA=mRNA /GEN=DXS9879E /PROD=ITBA2 protein /DB_XREF=gi:5174432 /UG=Hs.18212 DNA segment on chromosome X (unique) 9879 expressed sequence /FL=gb:NM_006014.1 NM_006014 L antigen family, member 3 LAGE3 8270 NM_006014 0008033 // tRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 15.05 67.40 1.14 0.29 0.37 -4.59
201698_s_at 201698_s_at NM_003769 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003769.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 9 (SFRS9), mRNA. /FEA=mRNA /GEN=SFRS9 /PROD=splicing factor, arginineserine-rich 9 /DB_XREF=gi:4506902 /UG=Hs.77608 splicing factor, arginineserine-rich 9 /FL=gb:U30825.1 gb:NM_003769.1 NM_003769 glutamyl-tRNA(Gln) amidotransferase, subunit C /// serine/arginine-rich splicing factor 9 GATC /// SRSF9 8683 /// 283459 NM_003769 /// NM_176818 /// NR_033684 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006376 // mRNA splice site selection // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006450 // regulation of translational fidelity // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0032543 // mitochondrial translation // inferred from mutant phenotype /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0070681 // glutaminyl-tRNAGln biosynthesis via transamidation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0030956 // glutamyl-tRNA(Gln) amidotransferase complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity, with glutamine as amido-N-donor // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050567 // glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity // inferred from direct assay 39.25 682.52 1.14 0.29 0.37 -4.59
209214_s_at 209214_s_at BC004817 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004817.1 /DEF=Homo sapiens, Ewing sarcoma breakpoint region 1, clone MGC:5432, mRNA, complete cds. /FEA=mRNA /PROD=Ewing sarcoma breakpoint region 1 /DB_XREF=gi:13435962 /UG=Hs.129953 Ewing sarcoma breakpoint region 1 /FL=gb:BC004817.1 gb:NM_005243.1 BC004817 EWS RNA-binding protein 1 EWSR1 2130 NM_001163285 /// NM_001163286 /// NM_001163287 /// NM_005243 /// NM_013986 /// XM_005261389 /// XM_005261390 /// XM_006724166 /// XM_006724167 /// XR_430403 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 28.92 419.09 1.14 0.29 0.37 -4.59
217986_s_at 217986_s_at NM_013448 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013448.1 /DEF=Homo sapiens bromodomain adjacent to zinc finger domain, 1A (BAZ1A), mRNA. /FEA=mRNA /GEN=BAZ1A /PROD=bromodomain adjacent to zinc finger domain, 1A /DB_XREF=gi:7304918 /UG=Hs.8858 bromodomain adjacent to zinc finger domain, 1A /FL=gb:AB032252.1 gb:NM_013448.1 NM_013448 bromodomain adjacent to zinc finger domain, 1A BAZ1A 11177 NM_013448 /// NM_182648 0006261 // DNA-dependent DNA replication // inferred from direct assay /// 0006338 // chromatin remodeling // traceable author statement /// 0006351 // transcription, DNA-templated // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement 0000228 // nuclear chromosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0008623 // CHRAC // inferred from direct assay /// 0016590 // ACF complex // traceable author statement 0004402 // histone acetyltransferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 26.55 259.12 1.14 0.29 0.37 -4.59
208720_s_at 208720_s_at AI890947 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI890947 /FEA=EST /DB_XREF=gi:5596111 /DB_XREF=est:wm93d01.x1 /CLONE=IMAGE:2443489 /UG=Hs.145696 splicing factor (CC1.3) /FL=gb:L10911.1 AI890947 RNA binding motif protein 39 RBM39 9584 NM_001242599 /// NM_001242600 /// NM_004902 /// NM_184234 /// NM_184237 /// NM_184241 /// NM_184244 /// NR_040722 /// NR_040723 /// NR_040724 /// XM_006723890 /// XM_006723891 /// XM_006723892 /// XM_006723893 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -44.98 393.34 -1.13 0.29 0.37 -4.59
202854_at 202854_at NM_000194 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000194.1 /DEF=Homo sapiens hypoxanthine phosphoribosyltransferase 1 (Lesch-Nyhan syndrome) (HPRT1), mRNA. /FEA=mRNA /GEN=HPRT1 /PROD=hypoxanthine phosphoribosyltransferase 1 /DB_XREF=gi:4504482 /UG=Hs.82314 hypoxanthine phosphoribosyltransferase 1 (Lesch-Nyhan syndrome) /FL=gb:BC000578.1 gb:M31642.1 gb:NM_000194.1 NM_000194 hypoxanthine phosphoribosyltransferase 1 HPRT1 3251 NM_000194 0001975 // response to amphetamine // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // inferred from mutant phenotype /// 0006166 // purine ribonucleoside salvage // inferred from mutant phenotype /// 0006168 // adenine salvage // not recorded /// 0006178 // guanine salvage // inferred from direct assay /// 0007610 // behavior // inferred from mutant phenotype /// 0007625 // grooming behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0019835 // cytolysis // inferred from electronic annotation /// 0021756 // striatum development // inferred from electronic annotation /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0032263 // GMP salvage // not recorded /// 0032264 // IMP salvage // not recorded /// 0032264 // IMP salvage // inferred from electronic annotation /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0043101 // purine-containing compound salvage // traceable author statement /// 0043103 // hypoxanthine salvage // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045964 // positive regulation of dopamine metabolic process // inferred from mutant phenotype /// 0046038 // GMP catabolic process // inferred from direct assay /// 0046040 // IMP metabolic process // inferred from direct assay /// 0046083 // adenine metabolic process // inferred from electronic annotation /// 0046100 // hypoxanthine metabolic process // inferred from mutant phenotype /// 0046651 // lymphocyte proliferation // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from physical interaction /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004422 // hypoxanthine phosphoribosyltransferase activity // not recorded /// 0004422 // hypoxanthine phosphoribosyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052657 // guanine phosphoribosyltransferase activity // inferred from direct assay 25.02 375.99 1.13 0.29 0.37 -4.59
203462_x_at 203462_x_at NM_003751 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003751.1 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 9 (eta, 116kD) (EIF3S9), mRNA. /FEA=mRNA /GEN=EIF3S9 /PROD=eukaryotic translation initiation factor 3,subunit 9 (eta, 116kD) /DB_XREF=gi:4503526 /UG=Hs.57783 eukaryotic translation initiation factor 3, subunit 9 (eta, 116kD) /FL=gb:U62583.1 gb:NM_003751.1 NM_003751 eukaryotic translation initiation factor 3, subunit B EIF3B 8662 NM_001037283 /// NM_003751 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0032947 // protein complex scaffold // traceable author statement -59.05 701.98 -1.13 0.29 0.38 -4.59
202252_at 202252_at NM_002870 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002870.1 /DEF=Homo sapiens RAB13, member RAS oncogene family (RAB13), mRNA. /FEA=mRNA /GEN=RAB13 /PROD=RAB13, member RAS oncogene family /DB_XREF=gi:4506362 /UG=Hs.151536 RAB13, member RAS oncogene family /FL=gb:BC000799.1 gb:NM_002870.1 NM_002870 RAB13, member RAS oncogene family RAB13 5872 NM_001272038 /// NM_002870 /// NR_073553 0006184 // GTP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0010737 // protein kinase A signaling // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0030866 // cortical actin cytoskeleton organization // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032456 // endocytic recycling // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0035767 // endothelial cell chemotaxis // inferred from sequence or structural similarity /// 0044795 // trans-Golgi network to recycling endosome transport // inferred from sequence or structural similarity /// 0061024 // membrane organization // traceable author statement /// 0070830 // tight junction assembly // inferred from mutant phenotype /// 0072659 // protein localization to plasma membrane // inferred from electronic annotation /// 0090002 // establishment of protein localization to plasma membrane // inferred from mutant phenotype /// 0097368 // establishment of Sertoli cell barrier // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0032593 // insulin-responsive compartment // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0055037 // recycling endosome // inferred from direct assay /// 0055038 // recycling endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0034236 // protein kinase A catalytic subunit binding // inferred from electronic annotation -51.20 450.93 -1.13 0.29 0.38 -4.59
200019_s_at 200019_s_at NM_001997 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001997.1 /DEF=Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 (FAU), mRNA. /FEA=mRNA /GEN=FAU /PROD=Finkel-Biskis-Reilly murine sarcoma virus(FBR-MuSV) ubiquitously expressed (fox derived); ribosomalprotein S30 /DB_XREF=gi:4503658 /UG=Hs.177415 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 /FL=gb:NM_001997.1 NM_001997 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed FAU 2197 NM_001997 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0002227 // innate immune response in mucosa // inferred from direct assay /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0019731 // antibacterial humoral response // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050830 // defense response to Gram-positive bacterium // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -82.95 1595.28 -1.13 0.29 0.38 -4.59
202579_x_at 202579_x_at NM_006353 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006353.1 /DEF=Homo sapiens high-mobility group (nonhistone chromosomal) protein 17-like 3 (HMG17L3), mRNA. /FEA=mRNA /GEN=HMG17L3 /PROD=high-mobility group (nonhistone chromosomal)protein 17-like 3 /DB_XREF=gi:10835239 /UG=Hs.236774 high-mobility group (nonhistone chromosomal) protein 17-like 3 /FL=gb:NM_006353.1 gb:U90549.1 NM_006353 high mobility group nucleosomal binding domain 4 HMGN4 10473 NM_006353 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from electronic annotation 22.27 398.21 1.13 0.29 0.38 -4.59
211783_s_at 211783_s_at BC006177 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006177.1 /DEF=Homo sapiens, Similar to metastasis associated 1, clone MGC:13258, mRNA, complete cds. /FEA=mRNA /PROD=Similar to metastasis associated 1 /DB_XREF=gi:13544097 /FL=gb:BC006177.1 BC006177 metastasis associated 1 MTA1 9112 NM_001203258 /// NM_004689 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0033363 // secretory granule organization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016581 // NuRD complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0001103 // RNA polymerase II repressing transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 29.73 239.36 1.13 0.29 0.38 -4.59
211285_s_at 211285_s_at U84404 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U84404.1 /DEF=Human E6-associated protein E6-APubiquitin-protein ligase (UBE3A) mRNA, alternatively spliced, complete cds. /FEA=mRNA /GEN=UBE3A /PROD=E6-associated protein E6-APubiquitin-proteinligase /DB_XREF=gi:1872513 /UG=Hs.180686 ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome) /FL=gb:AF273050.1 gb:U84404.1 U84404 ubiquitin protein ligase E3A UBE3A 7337 NM_000462 /// NM_130838 /// NM_130839 /// XM_005268267 /// XM_005268268 /// XM_005268269 /// XM_005268270 /// XM_005268271 /// XM_006720673 /// XM_006720674 /// XM_006720675 /// XM_006720676 0001541 // ovarian follicle development // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007420 // brain development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // not recorded /// 0035037 // sperm entry // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation 20.27 127.26 1.13 0.30 0.38 -4.59
213850_s_at 213850_s_at AI984932 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI984932 /FEA=EST /DB_XREF=gi:5812209 /DB_XREF=est:wr86e12.x1 /CLONE=IMAGE:2494606 /UG=Hs.51957 splicing factor, arginineserine-rich 2, interacting protein AI984932 SR-related CTD-associated factor 11 SCAF11 9169 NM_004719 /// XM_005269230 /// XM_006719692 0000245 // spliceosomal complex assembly // inferred from direct assay /// 0000375 // RNA splicing, via transesterification reactions // inferred from direct assay /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 21.23 163.56 1.13 0.30 0.38 -4.59
211996_s_at 211996_s_at BG256504 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG256504 /FEA=EST /DB_XREF=gi:12766320 /DB_XREF=est:602370041F1 /CLONE=IMAGE:4478098 /UG=Hs.110613 KIAA0220 protein BG256504 nuclear pore complex-interacting protein family member B4-like /// nuclear pore complex-interacting protein family member B4-like /// nuclear pore complex interacting protein pseudogene /// nuclear pore complex interacting protein family, member A5 /// nuclear pore complex interacting protein family, member B11 /// nuclear pore complex interacting protein family, member B3 /// nuclear pore complex interacting protein family, member B4 /// nuclear pore complex interacting protein family, member B5 LOC101060275 /// LOC101929910 /// LOC613037 /// NPIPA5 /// NPIPB11 /// NPIPB3 /// NPIPB4 /// NPIPB5 23117 /// 440345 /// 613037 /// 728888 /// 100132247 /// 100288332 /// 101060275 /// 101929910 NM_001135865 /// NM_001277325 /// NM_130464 /// NR_002555 /// XM_005255019 /// XM_005255020 /// XM_005255021 /// XM_005255024 /// XM_005276516 /// XM_006720823 /// XM_006720824 /// XM_006720825 /// XM_006720826 /// XM_006720827 /// XM_006720828 /// XM_006721108 /// XM_006721110 /// XM_006725185 /// XM_006725186 /// XM_006725187 /// XM_006725188 /// XM_006725189 /// XM_006726610 /// XM_006726615 /// XM_006726626 /// XM_006726627 /// XM_006726628 /// XR_433240 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -40.60 139.03 -1.12 0.30 0.38 -4.59
209397_at 209397_at BC000147 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000147.1 /DEF=Homo sapiens, Similar to malic enzyme 2, NAD(+)-dependent, mitochondrial, clone MGC:5187, mRNA, complete cds. /FEA=mRNA /PROD=Similar to malic enzyme 2, NAD(+)-dependent,mitochondrial /DB_XREF=gi:12652790 /UG=Hs.75342 malic enzyme 2, NAD(+)-dependent, mitochondrial /FL=gb:BC000147.1 BC000147 malic enzyme 2, NAD(+)-dependent, mitochondrial ME2 4200 NM_001168335 /// NM_002396 0006108 // malate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred from electronic annotation /// 0004471 // malate dehydrogenase (decarboxylating) (NAD+) activity // inferred from electronic annotation /// 0008948 // oxaloacetate decarboxylase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation -21.20 265.88 -1.12 0.30 0.38 -4.59
200794_x_at 200794_x_at NM_014764 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014764.1 /DEF=Homo sapiens DAZ associated protein 2 (DAZAP2), mRNA. /FEA=mRNA /GEN=DAZAP2 /PROD=DAZ associated protein 2 /DB_XREF=gi:7661885 /UG=Hs.75416 DAZ associated protein 2 /FL=gb:BC002334.1 gb:D31767.1 gb:NM_014764.1 NM_014764 DAZ associated protein 2 DAZAP2 9802 NM_001136264 /// NM_001136266 /// NM_001136267 /// NM_001136268 /// NM_001136269 /// NM_014764 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0050699 // WW domain binding // inferred from physical interaction 75.92 794.94 1.12 0.30 0.38 -4.59
211862_x_at 211862_x_at AF015451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF015451.1 /DEF=Homo sapiens Usurpin-beta mRNA, complete cds. /FEA=CDS /PROD=Usurpin-beta /DB_XREF=gi:3133282 /UG=Hs.195175 CASP8 and FADD-like apoptosis regulator /FL=gb:AF015451.1 AF015451 CASP8 and FADD-like apoptosis regulator CFLAR 8837 NM_001127183 /// NM_001127184 /// NM_001202515 /// NM_001202516 /// NM_001202517 /// NM_001202518 /// NM_001202519 /// NM_003879 /// XM_005246935 /// XM_005246936 /// XM_005246937 /// XM_005246938 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0014732 // skeletal muscle atrophy // inferred from sequence or structural similarity /// 0014842 // regulation of satellite cell proliferation // inferred from sequence or structural similarity /// 0014866 // skeletal myofibril assembly // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043403 // skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0060544 // regulation of necroptotic process // inferred from direct assay /// 0097190 // apoptotic signaling pathway // traceable author statement /// 1901740 // negative regulation of myoblast fusion // inferred from sequence or structural similarity /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0031264 // death-inducing signaling complex // inferred from direct assay /// 0031265 // CD95 death-inducing signaling complex // inferred from electronic annotation /// 0097342 // ripoptosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0035877 // death effector domain binding // not recorded 40.57 240.06 1.12 0.30 0.38 -4.59
200093_s_at 200093_s_at N32864 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N32864 /FEA=EST /DB_XREF=gi:1153263 /DB_XREF=est:yw88d08.s1 /CLONE=IMAGE:259311 /UG=Hs.256697 histidine triad nucleotide-binding protein N32864 histidine triad nucleotide binding protein 1 HINT1 3094 NM_005340 /// NR_024610 /// NR_024611 /// NR_073488 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009154 // purine ribonucleotide catabolic process // inferred from direct assay /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // traceable author statement /// 0016787 // hydrolase activity // inferred from direct assay 35.45 684.15 1.12 0.30 0.38 -4.59
217809_at 217809_at NM_014038 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014038.1 /DEF=Homo sapiens HSPC028 protein (HSPC028), mRNA. /FEA=mRNA /GEN=HSPC028 /PROD=HSPC028 protein /DB_XREF=gi:7661743 /UG=Hs.5216 HSPC028 protein /FL=gb:AF110323.1 gb:BC003056.1 gb:AF083246.1 gb:NM_014038.1 NM_014038 basic leucine zipper and W2 domains 2 BZW2 28969 NM_001159767 /// NM_014038 /// NR_027624 /// XM_006715706 /// XM_006715707 /// XM_006715708 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -94.67 732.96 -1.12 0.30 0.38 -4.59
200801_x_at 200801_x_at NM_001101 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001101.2 /DEF=Homo sapiens actin, beta (ACTB), mRNA. /FEA=mRNA /GEN=ACTB /PROD=beta actin /DB_XREF=gi:5016088 /UG=Hs.288061 actin, beta /FL=gb:BC001301.1 gb:BC002409.1 gb:BC004251.1 gb:NM_001101.2 NM_001101 actin, beta ACTB 60 NM_001101 /// XM_006715764 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -569.28 5412.44 -1.12 0.30 0.38 -4.59
202918_s_at 202918_s_at AF151853 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF151853.1 /DEF=Homo sapiens CGI-95 protein mRNA, complete cds. /FEA=mRNA /PROD=CGI-95 protein /DB_XREF=gi:4929658 /UG=Hs.107942 DKFZP564M112 protein /FL=gb:AB015441.1 gb:BC005237.1 gb:AF151853.1 gb:AL080070.1 gb:NM_015387.1 AF151853 HSPE1-MOB4 readthrough /// MOB family member 4, phocein HSPE1-MOB4 /// MOB4 25843 /// 100529241 NM_001100819 /// NM_001202485 /// NM_001204094 /// NM_015387 /// NM_199482 0006457 // protein folding // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 24.50 208.60 1.12 0.30 0.38 -4.59
211609_x_at 211609_x_at U51007 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U51007.1 /DEF=Human 26S protease subunit S5a mRNA, complete cds. /FEA=mRNA /PROD=26S protease subunit S5a /DB_XREF=gi:1256400 /FL=gb:U51007.1 U51007 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 PSMD4 5710 NM_002810 /// NM_153822 /// XM_005245354 /// XM_006711464 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008540 // proteasome regulatory particle, base subcomplex // inferred from electronic annotation /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -46.43 334.01 -1.12 0.30 0.38 -4.59
200620_at 200620_at NM_004872 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004872.1 /DEF=Homo sapiens chromosome 1 open reading frame 8 (C1ORF8), mRNA. /FEA=mRNA /GEN=C1ORF8 /PROD=chromosome 1 open reading frame 8 /DB_XREF=gi:4758571 /UG=Hs.11441 chromosome 1 open reading frame 8 /FL=gb:BC003106.1 gb:AF290615.1 gb:AF047439.1 gb:NM_004872.1 NM_004872 transmembrane protein 59 TMEM59 9528 NM_004872 /// XM_005271350 /// XM_005271351 /// XM_006711051 0006508 // proteolysis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0010508 // positive regulation of autophagy // inferred from mutant phenotype /// 0010955 // negative regulation of protein processing // inferred from direct assay /// 0090005 // negative regulation of establishment of protein localization to plasma membrane // inferred from direct assay /// 0090285 // negative regulation of protein glycosylation in Golgi // inferred from direct assay 0000137 // Golgi cis cisterna // inferred from direct assay /// 0000138 // Golgi trans cisterna // inferred from direct assay /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005797 // Golgi medial cisterna // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 42.63 463.24 1.11 0.30 0.38 -4.59
212371_at 212371_at AL049397 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049397.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586C1019 (from clone DKFZp586C1019). /FEA=mRNA /DB_XREF=gi:4500188 /UG=Hs.12314 Homo sapiens mRNA; cDNA DKFZp586C1019 (from clone DKFZp586C1019) AL049397 desumoylating isopeptidase 2 DESI2 51029 NM_016076 /// XM_005273154 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -28.03 441.86 -1.11 0.30 0.38 -4.59
218450_at 218450_at NM_015987 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015987.1 /DEF=Homo sapiens heme-binding protein (HEBP), mRNA. /FEA=mRNA /GEN=HEBP /PROD=heme-binding protein /DB_XREF=gi:7705404 /UG=Hs.108675 heme-binding protein /FL=gb:AF117615.1 gb:NM_015987.1 gb:AF167473.1 NM_015987 heme binding protein 1 HEBP1 50865 NM_015987 0007623 // circadian rhythm // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0020037 // heme binding // inferred from sequence or structural similarity 20.38 144.24 1.11 0.30 0.38 -4.59
212250_at 212250_at AV700332 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV700332 /FEA=EST /DB_XREF=gi:10302303 /DB_XREF=est:AV700332 /CLONE=GKCDIF11 /UG=Hs.243901 Homo sapiens cDNA FLJ20738 fis, clone HEP08257 AV700332 metadherin MTDH 92140 NM_178812 /// XM_005251098 /// XM_005251099 /// XM_005251100 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0010508 // positive regulation of autophagy // inferred from direct assay /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0070830 // tight junction assembly // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016604 // nuclear body // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0046581 // intercellular canaliculus // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051059 // NF-kappaB binding // inferred from physical interaction 54.82 360.79 1.11 0.30 0.38 -4.59
212464_s_at 212464_s_at X02761 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X02761.1 /DEF=Human mRNA for fibronectin (FN precursor). /FEA=mRNA /PROD=fibronectin precursor /DB_XREF=gi:31396 /UG=Hs.287820 fibronectin 1 X02761 fibronectin 1 FN1 2335 NM_002026 /// NM_054034 /// NM_212474 /// NM_212475 /// NM_212476 /// NM_212478 /// NM_212482 /// XM_005246397 /// XM_005246398 /// XM_005246399 /// XM_005246400 /// XM_005246401 /// XM_005246402 /// XM_005246403 /// XM_005246404 /// XM_005246405 /// XM_005246406 /// XM_005246407 /// XM_005246408 /// XM_005246409 /// XM_005246410 /// XM_005246411 /// XM_005246412 /// XM_005246413 /// XM_005246414 /// XM_005246415 /// XM_005246416 /// XM_005246417 0001525 // angiogenesis // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007161 // calcium-independent cell-matrix adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009611 // response to wounding // non-traceable author statement /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0016477 // cell migration // non-traceable author statement /// 0018149 // peptide cross-linking // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0042060 // wound healing // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from direct assay /// 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // non-traceable author statement /// 0008201 // heparin binding // non-traceable author statement /// 0016504 // peptidase activator activity // inferred from electronic annotation -274.48 3079.56 -1.11 0.30 0.38 -4.59
201666_at 201666_at NM_003254 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003254.1 /DEF=Homo sapiens tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) (TIMP1), mRNA. /FEA=mRNA /GEN=TIMP1 /PROD=tissue inhibitor of metalloproteinase 1precursor /DB_XREF=gi:4507508 /UG=Hs.5831 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) /FL=gb:BC000866.1 gb:M12670.1 gb:M59906.1 gb:NM_003254.1 NM_003254 TIMP metallopeptidase inhibitor 1 TIMP1 7076 NM_003254 /// XM_005272645 0001775 // cell activation // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034097 // response to cytokine // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043249 // erythrocyte maturation // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0048553 // negative regulation of metalloenzyme activity // inferred from direct assay /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // inferred from direct assay /// 1901164 // negative regulation of trophoblast cell migration // inferred from mutant phenotype /// 2001044 // regulation of integrin-mediated signaling pathway // inferred from mutant phenotype 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008191 // metalloendopeptidase inhibitor activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 31.92 419.89 1.11 0.30 0.38 -4.59
209455_at 209455_at BE963245 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE963245 /FEA=EST /DB_XREF=gi:11766663 /DB_XREF=est:601656874R1 /CLONE=IMAGE:3865699 /UG=Hs.21229 f-box and WD-40 domain protein 1B /FL=gb:AF176022.1 gb:AB033281.1 BE963245 F-box and WD repeat domain containing 11 FBXW11 23291 NM_012300 /// NM_033644 /// NM_033645 /// XM_005265855 /// XM_005265856 /// XM_005265857 /// XM_005265858 /// XM_005265859 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // inferred from direct assay /// 0000278 // mitotic cell cycle // traceable author statement /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // non-traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0031648 // protein destabilization // inferred from mutant phenotype /// 0042347 // negative regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042753 // positive regulation of circadian rhythm // inferred from sequence or structural similarity /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0045862 // positive regulation of proteolysis // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048511 // rhythmic process // inferred from electronic annotation 0000151 // ubiquitin ligase complex // non-traceable author statement /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation -19.60 151.03 -1.11 0.30 0.38 -4.59
201322_at 201322_at NM_001686 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001686.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (ATP5B), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=ATP5B /PROD=ATP synthase, H+ transporting, mitochondrial F1complex, beta polypeptide /DB_XREF=gi:4502294 /UG=Hs.25 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide /FL=gb:D00022.1 gb:NM_001686.1 NM_001686 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide ATP5B 506 NM_001686 0001525 // angiogenesis // inferred from mutant phenotype /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006754 // ATP biosynthetic process // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006933 // negative regulation of cell adhesion involved in substrate-bound cell migration // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0051453 // regulation of intracellular pH // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005754 // mitochondrial proton-transporting ATP synthase, catalytic core // non-traceable author statement /// 0005759 // mitochondrial matrix // non-traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred by curator /// 0042288 // MHC class I protein binding // inferred from direct assay /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from mutant phenotype -130.22 1575.31 -1.11 0.30 0.38 -4.59
33778_at 33778_at AL096779 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL096779:Novel human gene mapping to chomosome 2213.3 similar to yeast ORF YOR070C, putative GTPase Activator (start missing) /cds=(51,917) /gb=AL096779 /gi=5420221 /ug=Hs.20017 /len=1416 AL096779 TBC1 domain family, member 22A TBC1D22A 25771 NM_001284303 /// NM_001284304 /// NM_001284305 /// NM_014346 /// NR_104292 /// XM_005261496 /// XM_006724223 /// XR_244364 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay -21.68 194.31 -1.11 0.30 0.38 -4.59
202004_x_at 202004_x_at NM_003001 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003001.2 /DEF=Homo sapiens succinate dehydrogenase complex, subunit C, integral membrane protein, 15kD (SDHC), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=SDHC /PROD=succinate dehydrogenase complex, subunit Cprecursor /DB_XREF=gi:9257243 /UG=Hs.3577 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kD /FL=gb:U57877.1 gb:NM_003001.2 NM_003001 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa SDHC 6391 NM_001035511 /// NM_001035512 /// NM_001035513 /// NM_001278172 /// NM_003001 /// NR_103459 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0009060 // aerobic respiration // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // traceable author statement 0005739 // mitochondrion // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0045273 // respiratory chain complex II // traceable author statement /// 0045281 // succinate dehydrogenase complex // inferred from electronic annotation 0000104 // succinate dehydrogenase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 27.42 354.84 1.11 0.30 0.39 -4.59
220477_s_at 220477_s_at NM_014145 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014145.1 /DEF=Homo sapiens HSPC274 protein (HSPC274), mRNA. /FEA=mRNA /GEN=HSPC274 /PROD=HSPC274 protein /DB_XREF=gi:7661833 /UG=Hs.323476 HSPC274 protein /FL=gb:AF161392.1 gb:NM_014145.1 NM_014145 transmembrane protein 230 TMEM230 29058 NM_001009923 /// NM_001009924 /// NM_001009925 /// NM_014145 /// XM_005260713 /// XM_006723561 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 33.92 305.39 1.11 0.30 0.39 -4.59
200787_s_at 200787_s_at BC002426 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002426.1 /DEF=Homo sapiens, phosphoprotein enriched in astrocytes 15, clone MGC:1685, mRNA, complete cds. /FEA=mRNA /PROD=phosphoprotein enriched in astrocytes 15 /DB_XREF=gi:12803230 /UG=Hs.194673 phosphoprotein enriched in astrocytes 15 /FL=gb:BC002426.1 gb:NM_003768.1 BC002426 phosphoprotein enriched in astrocytes 15 PEA15 8682 NM_003768 /// XM_005245564 /// XM_006711598 /// XM_006711599 0006810 // transport // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0046325 // negative regulation of glucose import // inferred from direct assay /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005875 // microtubule associated complex // non-traceable author statement 0005515 // protein binding // inferred from physical interaction 41.32 487.34 1.11 0.30 0.39 -4.59
211036_x_at 211036_x_at BC006301 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006301.1 /DEF=Homo sapiens, anaphase-promoting complex subunit 5, clone MGC:13295, mRNA, complete cds. /FEA=mRNA /PROD=anaphase-promoting complex subunit 5 /DB_XREF=gi:13623410 /FL=gb:BC006301.1 BC006301 anaphase promoting complex subunit 5 ANAPC5 51433 NM_001137559 /// NM_016237 /// XM_005253900 /// XM_006719449 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000090 // mitotic anaphase // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005680 // anaphase-promoting complex // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction 33.40 437.00 1.10 0.31 0.39 -4.59
217811_at 217811_at NM_016275 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016275.1 /DEF=Homo sapiens selenoprotein T (LOC51714), mRNA. /FEA=mRNA /GEN=LOC51714 /PROD=selenoprotein T /DB_XREF=gi:7706470 /UG=Hs.8148 selenoprotein T /FL=gb:AF131856.1 gb:AF195141.1 gb:NM_016275.1 NM_016275 selenoprotein T SELT 51714 NM_016275 0001514 // selenocysteine incorporation // non-traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0008430 // selenium binding // non-traceable author statement -40.68 521.61 -1.10 0.31 0.39 -4.59
221619_s_at 221619_s_at AF189289 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF189289.1 /DEF=Homo sapiens presenilin-associated protein mRNA, complete cds. /FEA=mRNA /PROD=presenilin-associated protein /DB_XREF=gi:6409315 /UG=Hs.279939 mitochondrial carrier homolog 1 /FL=gb:AF189289.1 AF189289 mitochondrial carrier 1 MTCH1 23787 NM_001271641 /// NM_014341 /// XM_005248978 /// XM_005248979 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0009966 // regulation of signal transduction // non-traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from expression pattern /// 0045161 // neuronal ion channel clustering // non-traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005739 // mitochondrion // inferred from mutant phenotype /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -150.27 1405.39 -1.10 0.31 0.39 -4.59
202413_s_at 202413_s_at NM_003368 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003368.1 /DEF=Homo sapiens ubiquitin specific protease 1 (USP1), mRNA. /FEA=mRNA /GEN=USP1 /PROD=ubiquitin specific protease 1 /DB_XREF=gi:4507850 /UG=Hs.35086 ubiquitin specific protease 1 /FL=gb:AB014458.1 gb:AF117386.1 gb:NM_003368.1 gb:AL117575.1 NM_003368 ubiquitin specific peptidase 1 USP1 7398 NM_001017415 /// NM_001017416 /// NM_003368 0006281 // DNA repair // traceable author statement /// 0006282 // regulation of DNA repair // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0009411 // response to UV // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from direct assay /// 0035520 // monoubiquitinated protein deubiquitination // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation -17.45 287.18 -1.10 0.31 0.39 -4.59
202783_at 202783_at U40490 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U40490.1 /DEF=Human nicotinamide nucleotide transhydrogenase mRNA, nuclear gene encoding mitochondrial protein, complete cds. /FEA=mRNA /PROD=nicotinamide nucleotide transhydrogenase /DB_XREF=gi:1110519 /UG=Hs.18136 nicotinamide nucleotide transhydrogenase /FL=gb:U40490.1 gb:NM_012343.1 U40490 nicotinamide nucleotide transhydrogenase NNT 23530 NM_012343 /// NM_182977 /// XM_005248274 /// XM_005248275 /// XM_006714461 0006099 // tricarboxylic acid cycle // traceable author statement /// 0015992 // proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // traceable author statement /// 0072593 // reactive oxygen species metabolic process // inferred from mutant phenotype /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003957 // NAD(P)+ transhydrogenase (B-specific) activity // traceable author statement /// 0008746 // NAD(P)+ transhydrogenase activity // not recorded /// 0008750 // NAD(P)+ transhydrogenase (AB-specific) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050661 // NADP binding // inferred from direct assay /// 0051287 // NAD binding // traceable author statement 21.50 82.58 1.10 0.31 0.39 -4.59
206809_s_at 206809_s_at NM_005758 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005758.1 /DEF=Homo sapiens heterogeneous nuclear protein similar to rat helix destabilizing protein (FBRNP), mRNA. /FEA=mRNA /GEN=FBRNP /PROD=heterogeneous nuclear protein similar to rathelix destabilizing protein /DB_XREF=gi:5031692 /UG=Hs.249247 heterogeneous nuclear protein similar to rat helix destabilizing protein /FL=gb:NM_005758.1 NM_005758 heterogeneous nuclear ribonucleoprotein A3 /// heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 HNRNPA3 /// HNRNPA3P1 10151 /// 220988 NM_194247 /// NR_002726 /// XM_005246380 /// XM_005246381 /// XM_005246382 /// XM_006712365 /// XR_427076 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 43.50 346.15 1.09 0.31 0.39 -4.59
222230_s_at 222230_s_at AK022248 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK022248.1 /DEF=Homo sapiens cDNA FLJ12186 fis, clone MAMMA1000824, weakly similar to ACTIN. /FEA=mRNA /DB_XREF=gi:10433604 /UG=Hs.274369 uncharacterized hypothalamus protein HARP11 AK022248 actin-related protein 10 homolog (S. cerevisiae) ACTR10 55860 NM_018477 0007018 // microtubule-based movement // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005869 // dynactin complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -40.50 474.77 -1.09 0.31 0.39 -4.59
217024_x_at 217024_x_at AC004832 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC004832 /DEF=Homo sapiens PAC clone RP4-539M6 from 22 /FEA=CDS_3 /DB_XREF=gi:6624129 /UG=Hs.287353 Homo sapiens PAC clone RP4-539M6 from 22 AC004832 signal-regulatory protein alpha pseudogene 1 /// SIRPAP1 /// SIRPAP1 -17.90 36.48 -1.09 0.31 0.39 -4.59
201106_at 201106_at NM_002085 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002085.1 /DEF=Homo sapiens glutathione peroxidase 4 (phospholipid hydroperoxidase) (GPX4), mRNA. /FEA=mRNA /GEN=GPX4 /PROD=glutathione peroxidase 4 /DB_XREF=gi:4504106 /UG=Hs.2706 glutathione peroxidase 4 (phospholipid hydroperoxidase) /FL=gb:NM_002085.1 NM_002085 glutathione peroxidase 4 GPX4 2879 NM_001039847 /// NM_001039848 /// NM_002085 0006325 // chromatin organization // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0019372 // lipoxygenase pathway // traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0055114 // oxidation-reduction process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // traceable author statement /// 0008430 // selenium binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from electronic annotation /// 0047066 // phospholipid-hydroperoxide glutathione peroxidase activity // inferred from electronic annotation -92.15 777.80 -1.09 0.31 0.39 -4.59
210986_s_at 210986_s_at Z24727 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:Z24727.1 /DEF=H.sapiens tropomyosin isoform mRNA, complete CDS. /FEA=mRNA /PROD=tropomyosin isoform /DB_XREF=gi:854188 /UG=Hs.77899 tropomyosin 1 (alpha) /FL=gb:Z24727.1 Z24727 tropomyosin 1 (alpha) TPM1 7168 NM_000366 /// NM_001018004 /// NM_001018005 /// NM_001018006 /// NM_001018007 /// NM_001018008 /// NM_001018020 /// XM_005254637 /// XM_005254638 /// XM_005254639 /// XM_005254640 /// XM_005254641 /// XM_005254643 /// XM_005254644 /// XM_005254645 /// XM_005254646 /// XM_005254647 /// XM_005254648 /// XM_005254649 /// XM_005254650 /// XM_005254651 /// XM_005254652 /// XM_005254653 /// XM_006720667 /// XM_006720668 /// XM_006720669 /// XR_429470 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003065 // positive regulation of heart rate by epinephrine // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0006937 // regulation of muscle contraction // traceable author statement /// 0007010 // cytoskeleton organization // traceable author statement /// 0008016 // regulation of heart contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from sequence or structural similarity /// 0030049 // muscle filament sliding // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0031529 // ruffle organization // inferred from sequence or structural similarity /// 0032781 // positive regulation of ATPase activity // inferred from sequence or structural similarity /// 0034614 // cellular response to reactive oxygen species // inferred from expression pattern /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0045214 // sarcomere organization // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from sequence or structural similarity /// 0051496 // positive regulation of stress fiber assembly // inferred from sequence or structural similarity /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005862 // muscle thin filament tropomyosin // traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030017 // sarcomere // traceable author statement /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032059 // bleb // inferred from mutant phenotype /// 0032587 // ruffle membrane // inferred from direct assay 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003779 // actin binding // traceable author statement /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0008092 // cytoskeletal protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // traceable author statement -206.75 1892.93 -1.09 0.31 0.39 -4.59
207165_at 207165_at NM_012485 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012485.1 /DEF=Homo sapiens hyaluronan-mediated motility receptor (RHAMM) (HMMR), transcript variant 2, mRNA. /FEA=mRNA /GEN=HMMR /PROD=hyaluronan-mediated motility receptor (RHAMM) /DB_XREF=gi:7108350 /UG=Hs.72550 hyaluronan-mediated motility receptor (RHAMM) /FL=gb:NM_012485.1 NM_012485 hyaluronan-mediated motility receptor (RHAMM) HMMR 3161 NM_001142556 /// NM_001142557 /// NM_012484 /// NM_012485 0005975 // carbohydrate metabolic process // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005540 // hyaluronic acid binding // inferred from electronic annotation -33.38 172.29 -1.09 0.31 0.39 -4.59
205273_s_at 205273_s_at NM_014968 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014968.1 /DEF=Homo sapiens KIAA1104 protein (KIAA1104), mRNA. /FEA=mRNA /GEN=KIAA1104 /PROD=KIAA1104 protein /DB_XREF=gi:7662487 /UG=Hs.279039 KIAA1104 protein /FL=gb:AB029027.1 gb:NM_014968.1 NM_014968 pitrilysin metallopeptidase 1 PITRM1 10531 NM_001242307 /// NM_001242309 /// NM_014889 /// NM_014968 /// XM_005252345 /// XM_006717362 /// XR_428633 0006508 // proteolysis // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0008047 // enzyme activator activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -61.73 547.61 -1.09 0.31 0.39 -4.59
201319_at 201319_at NM_006471 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006471.1 /DEF=Homo sapiens myosin, light polypeptide, regulatory, non-sarcomeric (20kD) (MLCB), mRNA. /FEA=mRNA /GEN=MLCB /PROD=myosin, light polypeptide, regulatory,non-sarcomeric (20kD) /DB_XREF=gi:5453739 /UG=Hs.233936 myosin, light polypeptide, regulatory, non-sarcomeric (20kD) /FL=gb:NM_006471.1 NM_006471 myosin, light chain 12A, regulatory, non-sarcomeric MYL12A 10627 NM_006471 /// XM_005258076 /// XM_005258077 /// XM_005258078 0008360 // regulation of cell shape // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from electronic annotation 0001725 // stress fiber // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016460 // myosin II complex // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0035254 // glutamate receptor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -63.60 475.12 -1.09 0.31 0.39 -4.59
209536_s_at 209536_s_at AF320070 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF320070.1 /DEF=Homo sapiens hepatocellular carcinoma-associated protein HCA10 mRNA, complete cds. /FEA=mRNA /PROD=hepatocellular carcinoma-associated proteinHCA10 /DB_XREF=gi:11386004 /UG=Hs.55058 EH-domain containing 4 /FL=gb:AF307137.1 gb:AF320070.1 gb:AF323924.1 AF320070 EH-domain containing 4 EHD4 30844 NM_139265 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006907 // pinocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0032456 // endocytic recycling // inferred from genetic interaction /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from physical interaction /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 33.57 654.34 1.09 0.31 0.39 -4.59
202779_s_at 202779_s_at NM_014501 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014501.1 /DEF=Homo sapiens ubiquitin carrier protein (E2-EPF), mRNA. /FEA=mRNA /GEN=E2-EPF /PROD=ubiquitin carrier protein /DB_XREF=gi:7657045 /UG=Hs.174070 ubiquitin carrier protein /FL=gb:M91670.1 gb:NM_014501.1 NM_014501 ubiquitin-conjugating enzyme E2S UBE2S 27338 NM_014501 0006464 // cellular protein modification process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010458 // exit from mitosis // inferred from direct assay /// 0010458 // exit from mitosis // inferred from mutant phenotype /// 0010994 // free ubiquitin chain polymerization // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0035519 // protein K29-linked ubiquitination // inferred from direct assay /// 0044314 // protein K27-linked ubiquitination // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051488 // activation of anaphase-promoting complex activity // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0085020 // protein K6-linked ubiquitination // inferred from direct assay 0005680 // anaphase-promoting complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 73.45 519.62 1.09 0.31 0.39 -4.59
218605_at 218605_at NM_022366 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022366.1 /DEF=Homo sapiens hypothetical protein FLJ23182 (FLJ23182), mRNA. /FEA=mRNA /GEN=FLJ23182 /PROD=hypothetical protein FLJ23182 /DB_XREF=gi:11641288 /UG=Hs.7395 hypothetical protein FLJ23182 /FL=gb:NM_022366.1 gb:BC003383.1 NM_022366 transcription factor B2, mitochondrial TFB2M 64216 NM_022366 0000154 // rRNA modification // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006390 // transcription from mitochondrial promoter // inferred from direct assay /// 0006390 // transcription from mitochondrial promoter // traceable author statement /// 0006391 // transcription initiation from mitochondrial promoter // inferred from direct assay /// 0006391 // transcription initiation from mitochondrial promoter // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0000179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 42.98 205.74 1.09 0.31 0.39 -4.59
217810_x_at 217810_x_at NM_020117 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020117.1 /DEF=Homo sapiens hypothetical protein FLJ10595 (FLJ10595), mRNA. /FEA=mRNA /GEN=FLJ10595 /PROD=hypothetical protein FLJ10595 /DB_XREF=gi:9910223 /UG=Hs.6762 hypothetical protein FLJ10595 /FL=gb:D84223.1 gb:NM_020117.1 NM_020117 leucyl-tRNA synthetase LARS 51520 NM_020117 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006429 // leucyl-tRNA aminoacylation // inferred from electronic annotation /// 0006450 // regulation of translational fidelity // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0002161 // aminoacyl-tRNA editing activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004823 // leucine-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 22.32 184.71 1.08 0.31 0.40 -4.59
201096_s_at 201096_s_at AL537042 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL537042 /FEA=EST /DB_XREF=gi:12800535 /DB_XREF=est:AL537042 /CLONE=CS0DF017YF17 (5 prime) /UG=Hs.75290 ADP-ribosylation factor 4 /FL=gb:BC003364.1 gb:M36341.1 gb:NM_001660.2 AL537042 ADP-ribosylation factor 4 ARF4 378 NM_001660 0006471 // protein ADP-ribosylation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0031584 // activation of phospholipase D activity // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048678 // response to axon injury // inferred from electronic annotation /// 2000377 // regulation of reactive oxygen species metabolic process // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation 122.95 1120.85 1.08 0.31 0.40 -4.59
217906_at 217906_at NM_014315 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014315.1 /DEF=Homo sapiens host cell factor homolog (LCP), mRNA. /FEA=mRNA /GEN=LCP /PROD=host cell factor homolog /DB_XREF=gi:7657300 /UG=Hs.20597 host cell factor homolog /FL=gb:BC002335.1 gb:AF113131.1 gb:NM_014315.1 gb:AF244137.1 NM_014315 kelch domain containing 2 KLHDC2 23588 NM_014315 /// XM_006720094 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -15.72 214.09 -1.08 0.31 0.40 -4.59
201459_at 201459_at NM_006666 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006666.1 /DEF=Homo sapiens RuvB (E coli homolog)-like 2 (RUVBL2), mRNA. /FEA=mRNA /GEN=RUVBL2 /PROD=RuvB (E coli homolog)-like 2 /DB_XREF=gi:5730022 /UG=Hs.6455 RuvB (E coli homolog)-like 2 /FL=gb:BC000428.1 gb:BC004531.1 gb:AB024301.1 gb:AF151804.1 gb:AF155138.1 gb:NM_006666.1 gb:AL136743.1 gb:AF124607.1 NM_006666 RuvB-like AAA ATPase 2 RUVBL2 10856 NM_006666 /// XM_005258426 /// XM_005258427 /// XM_005258428 0006200 // ATP catabolic process // inferred from direct assay /// 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006338 // chromatin remodeling // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0034644 // cellular response to UV // inferred from mutant phenotype /// 0035066 // positive regulation of histone acetylation // inferred from mutant phenotype /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from direct assay /// 0043968 // histone H2A acetylation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0071169 // establishment of protein localization to chromatin // inferred from mutant phenotype /// 0071392 // cellular response to estradiol stimulus // inferred from mutant phenotype /// 0071733 // transcriptional activation by promoter-enhancer looping // inferred from mutant phenotype /// 0071899 // negative regulation of estrogen receptor binding // inferred from mutant phenotype 0000812 // Swr1 complex // inferred from direct assay /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031011 // Ino80 complex // inferred from direct assay /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071339 // MLL1 complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003678 // DNA helicase activity // inferred from direct assay /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0043141 // ATP-dependent 5'-3' DNA helicase activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // traceable author statement -21.00 210.78 -1.08 0.31 0.40 -4.59
211270_x_at 211270_x_at BC002397 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002397.1 /DEF=Homo sapiens, polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I), clone MGC:8461, mRNA, complete cds. /FEA=mRNA /PROD=polypyrimidine tract binding protein(heterogeneous nuclear ribonucleoprotein I) /DB_XREF=gi:12803182 /UG=Hs.172550 polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) /FL=gb:BC002397.1 BC002397 polypyrimidine tract binding protein 1 PTBP1 5725 NM_002819 /// NM_031990 /// NM_031991 /// NM_175847 /// XM_005259597 /// XM_005259598 /// XR_244034 /// XR_244035 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051148 // negative regulation of muscle cell differentiation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008187 // poly-pyrimidine tract binding // traceable author statement /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 89.10 681.80 1.08 0.31 0.40 -4.59
201072_s_at 201072_s_at AW152160 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW152160 /FEA=EST /DB_XREF=gi:6200058 /DB_XREF=est:xf75e01.x1 /CLONE=IMAGE:2623896 /UG=Hs.172280 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 /FL=gb:U66615.1 gb:NM_003074.1 AW152160 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 SMARCC1 6599 NM_003074 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0001741 // XY body // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071778 // WINAC complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction -14.27 99.54 -1.08 0.31 0.40 -4.59
214431_at 214431_at NM_003875 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_003875.1 /DEF=Homo sapiens guanine monphosphate synthetase (GMPS), mRNA. /FEA=CDS /GEN=GMPS /PROD=guanine monophosphate synthetase /DB_XREF=gi:4504034 /UG=Hs.5398 guanine monphosphate synthetase /FL=gb:NM_003875.1 gb:U10860.1 NM_003875 guanine monphosphate synthase GMPS 8833 NM_003875 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006177 // GMP biosynthetic process // inferred from electronic annotation /// 0006529 // asparagine biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0009113 // purine nucleobase biosynthetic process // traceable author statement /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003921 // GMP synthase activity // traceable author statement /// 0003922 // GMP synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation /// 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016462 // pyrophosphatase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 28.15 108.33 1.08 0.31 0.40 -4.59
221580_s_at 221580_s_at BC001972 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001972.1 /DEF=Homo sapiens, clone MGC:5306, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:5306) /DB_XREF=gi:12805036 /UG=Hs.301732 hypothetical protein MGC5306 /FL=gb:BC001972.1 BC001972 microRNA 1304 /// small nucleolar RNA, H/ACA box 1 /// small nucleolar RNA, H/ACA box 18 /// small nucleolar RNA, H/ACA box 32 /// small nucleolar RNA, H/ACA box 40 /// small nucleolar RNA, H/ACA box 8 /// small nucleolar RNA, C/D box 5 /// TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa MIR1304 /// SNORA1 /// SNORA18 /// SNORA32 /// SNORA40 /// SNORA8 /// SNORD5 /// TAF1D 79101 /// 654320 /// 677792 /// 677805 /// 677822 /// 692063 /// 692072 /// 100302240 NM_024116 /// NR_002920 /// NR_002959 /// NR_002973 /// NR_003026 /// NR_003032 /// NR_003033 /// NR_031639 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006361 // transcription initiation from RNA polymerase I promoter // traceable author statement /// 0006362 // transcription elongation from RNA polymerase I promoter // traceable author statement /// 0006363 // termination of RNA polymerase I transcription // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005668 // RNA polymerase transcription factor SL1 complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 27.93 292.84 1.08 0.31 0.40 -4.59
207809_s_at 207809_s_at NM_001183 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001183.1 /DEF=Homo sapiens ATPase, H+ transporting, lysosomal (vacuolar proton pump), subunit 1 (ATP6S1), mRNA. /FEA=mRNA /GEN=ATP6S1 /PROD=ATPase, H+ transporting, lysosomal subunit 1 /DB_XREF=gi:4557340 /UG=Hs.6551 ATPase, H+ transporting, lysosomal (vacuolar proton pump), subunit 1 /FL=gb:NM_001183.1 NM_001183 ATPase, H+ transporting, lysosomal accessory protein 1 ATP6AP1 537 NM_001183 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from sequence or structural similarity /// 0045780 // positive regulation of bone resorption // inferred from sequence or structural similarity /// 0045851 // pH reduction // inferred from sequence or structural similarity /// 0045921 // positive regulation of exocytosis // inferred from sequence or structural similarity /// 0051656 // establishment of organelle localization // inferred from sequence or structural similarity /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 2001206 // positive regulation of osteoclast development // inferred from sequence or structural similarity 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016469 // proton-transporting two-sector ATPase complex // traceable author statement /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from sequence or structural similarity /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 23.82 561.59 1.08 0.31 0.40 -4.59
201399_s_at 201399_s_at NM_014294 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014294.1 /DEF=Homo sapiens translocating chain-associating membrane protein (TRAM), mRNA. /FEA=mRNA /GEN=TRAM /PROD=translocating chain-associating membraneprotein /DB_XREF=gi:7657654 /UG=Hs.4147 translocating chain-associating membrane protein /FL=gb:BC000687.1 gb:NM_014294.1 NM_014294 translocation associated membrane protein 1 TRAM1 23471 NM_014294 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -76.58 619.09 -1.08 0.31 0.40 -4.59
201064_s_at 201064_s_at NM_003819 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003819.2 /DEF=Homo sapiens poly(A)-binding protein, cytoplasmic 4 (inducible form) (PABPC4), mRNA. /FEA=mRNA /GEN=PABPC4 /PROD=poly(A)-binding protein, cytoplasmic 4(inducible form) /DB_XREF=gi:6552335 /UG=Hs.169900 poly(A)-binding protein, cytoplasmic 4 (inducible form) /FL=gb:NM_003819.2 NM_003819 polyadenylate-binding protein 4-like /// poly(A) binding protein, cytoplasmic 4 (inducible form) LOC100996696 /// PABPC4 8761 /// 100996696 NM_001135653 /// NM_001135654 /// NM_003819 /// XM_005269266 /// XM_005275723 /// XM_005276424 0006396 // RNA processing // traceable author statement /// 0006401 // RNA catabolic process // traceable author statement /// 0006412 // translation // traceable author statement /// 0007596 // blood coagulation // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from direct assay /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0017130 // poly(C) RNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -57.03 455.64 -1.08 0.31 0.40 -4.59
213408_s_at 213408_s_at AK024034 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024034.1 /DEF=Homo sapiens cDNA FLJ13972 fis, clone Y79AA1001548, highly similar to PHOSPHATIDYLINOSITOL 4-KINASE ALPHA (EC 2.7.1.67). /FEA=mRNA /DB_XREF=gi:10436297 /UG=Hs.171625 phosphatidylinositol 4-kinase, catalytic, alpha polypeptide AK024034 phosphatidylinositol 4-kinase, catalytic, alpha /// phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 /// phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 PI4KA /// PI4KAP1 /// PI4KAP2 5297 /// 375133 /// 728233 NM_002650 /// NM_058004 /// NR_003563 /// NR_003700 /// XM_005261634 /// XM_005261635 /// XR_249020 0006644 // phospholipid metabolic process // traceable author statement /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046854 // phosphatidylinositol phosphorylation // inferred from electronic annotation /// 0048015 // phosphatidylinositol-mediated signaling // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004430 // 1-phosphatidylinositol 4-kinase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 20.35 205.97 1.08 0.31 0.40 -4.59
207163_s_at 207163_s_at NM_005163 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005163.1 /DEF=Homo sapiens v-akt murine thymoma viral oncogene homolog 1 (AKT1), mRNA. /FEA=mRNA /GEN=AKT1 /PROD=serinethreonine protein kinase /DB_XREF=gi:4885060 /UG=Hs.71816 v-akt murine thymoma viral oncogene homolog 1 /FL=gb:M63167.1 gb:NM_005163.1 NM_005163 v-akt murine thymoma viral oncogene homolog 1 AKT1 207 NM_001014431 /// NM_001014432 /// NM_005163 /// XM_005267401 0000060 // protein import into nucleus, translocation // inferred from mutant phenotype /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001893 // maternal placenta development // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from mutant phenotype /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0006809 // nitric oxide biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006924 // activation-induced cell death of T cells // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0009408 // response to heat // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010507 // negative regulation of autophagy // inferred from mutant phenotype /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from mutant phenotype /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // inferred from mutant phenotype /// 0010951 // negative regulation of endopeptidase activity // inferred from mutant phenotype /// 0010975 // regulation of neuron projection development // inferred from sequence or structural similarity /// 0015758 // glucose transport // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030154 // cell differentiation // traceable author statement /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030334 // regulation of cell migration // inferred from mutant phenotype /// 0030334 // regulation of cell migration // traceable author statement /// 0031018 // endocrine pancreas development // traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0031659 // positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0031999 // negative regulation of fatty acid beta-oxidation // inferred from mutant phenotype /// 0032094 // response to food // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // inferred from sequence or structural similarity /// 0032287 // peripheral nervous system myelin maintenance // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034405 // response to fluid shear stress // inferred from mutant phenotype /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042640 // anagen // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from sequence or structural similarity /// 0043491 // protein kinase B signaling // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045600 // positive regulation of fat cell differentiation // inferred from mutant phenotype /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from mutant phenotype /// 0045725 // positive regulation of glycogen biosynthetic process // non-traceable author statement /// 0045792 // negative regulation of cell size // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046777 // protein autophosphorylation // traceable author statement /// 0046889 // positive regulation of lipid biosynthetic process // inferred from mutant phenotype /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from mutant phenotype /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0060644 // mammary gland epithelial cell differentiation // traceable author statement /// 0060709 // glycogen cell differentiation involved in embryonic placenta development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0070141 // response to UV-A // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from mutant phenotype /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from sequence or structural similarity /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 0097194 // execution phase of apoptosis // inferred from electronic annotation /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement /// 1901976 // regulation of cell cycle checkpoint // traceable author statement /// 1902176 // negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress // non-traceable author statement /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred by curator /// 0005524 // ATP binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0016301 // kinase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from mutant phenotype /// 0042802 // identical protein binding // inferred from physical interaction /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from direct assay /// 0071889 // 14-3-3 protein binding // inferred from physical interaction 21.75 259.38 1.08 0.32 0.40 -4.59
220659_s_at 220659_s_at NM_018275 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018275.1 /DEF=Homo sapiens hypothetical protein FLJ10925 (FLJ10925), mRNA. /FEA=mRNA /GEN=FLJ10925 /PROD=hypothetical protein FLJ10925 /DB_XREF=gi:8922774 /UG=Hs.23241 hypothetical protein FLJ10925 /FL=gb:AL136555.1 gb:NM_018275.1 NM_018275 chromosome 7 open reading frame 43 C7orf43 55262 NM_018275 -18.23 31.39 -1.08 0.32 0.40 -4.59
202144_s_at 202144_s_at NM_000026 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000026.1 /DEF=Homo sapiens adenylosuccinate lyase (ADSL), mRNA. /FEA=mRNA /GEN=ADSL /PROD=adenylosuccinate lyase /DB_XREF=gi:4557268 /UG=Hs.75527 adenylosuccinate lyase /FL=gb:AF067853.1 gb:NM_000026.1 NM_000026 adenylosuccinate lyase ADSL 158 NM_000026 /// NM_001123378 0001666 // response to hypoxia // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006163 // purine nucleotide metabolic process // inferred from electronic annotation /// 0006164 // purine nucleotide biosynthetic process // inferred by curator /// 0006167 // AMP biosynthetic process // inferred from direct assay /// 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008152 // metabolic process // inferred from direct assay /// 0009060 // aerobic respiration // inferred from electronic annotation /// 0009152 // purine ribonucleotide biosynthetic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0014850 // response to muscle activity // inferred from electronic annotation /// 0042594 // response to starvation // inferred from electronic annotation /// 0044208 // 'de novo' AMP biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051262 // protein tetramerization // inferred from direct assay /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004018 // N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity // inferred from direct assay /// 0004018 // N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0070626 // (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity // inferred from electronic annotation -39.20 350.00 -1.07 0.32 0.40 -4.59
215128_at 215128_at AV704232 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV704232 /FEA=EST /DB_XREF=gi:10721550 /DB_XREF=est:AV704232 /CLONE=ADBBLB11 /UG=Hs.228096 Homo sapiens cDNA FLJ11682 fis, clone HEMBA1004880 AV704232 20.70 93.83 1.07 0.32 0.40 -4.59
211681_s_at 211681_s_at AF116705 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF116705.1 /DEF=Homo sapiens PRO2489 mRNA, complete cds. /FEA=mRNA /PROD=PRO2489 /DB_XREF=gi:7959908 /FL=gb:AF116705.1 AF116705 PDZ and LIM domain 5 PDLIM5 10611 NM_001011513 /// NM_001011515 /// NM_001011516 /// NM_001256425 /// NM_001256426 /// NM_001256427 /// NM_001256428 /// NM_001256429 /// NM_006457 /// NR_046186 /// XM_005262693 /// XM_005262695 /// XM_005262696 /// XM_005262698 /// XM_006714066 /// XM_006714067 /// XM_006714068 /// XM_006714069 /// XM_006714070 0051963 // regulation of synapse assembly // inferred from sequence or structural similarity /// 0061001 // regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -20.20 184.22 -1.07 0.32 0.40 -4.59
221794_at 221794_at AI198543 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI198543 /FEA=EST /DB_XREF=gi:3751149 /DB_XREF=est:qf49f11.x1 /CLONE=IMAGE:1753389 /UG=Hs.8982 ESTs, Highly similar to KIAA1395 protein H.sapiens AI198543 dedicator of cytokinesis 6 DOCK6 57572 NM_020812 /// XM_005260000 /// XM_005260001 /// XM_006722802 /// XM_006722803 /// XM_006722804 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 16.13 183.84 1.07 0.32 0.40 -4.59
219397_at 219397_at NM_025147 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025147.1 /DEF=Homo sapiens hypothetical protein FLJ13448 (FLJ13448), mRNA. /FEA=mRNA /GEN=FLJ13448 /PROD=hypothetical protein FLJ13448 /DB_XREF=gi:13376736 /UG=Hs.288945 hypothetical protein FLJ13448 /FL=gb:NM_025147.1 NM_025147 coenzyme Q10 homolog B (S. cerevisiae) COQ10B 80219 NM_025147 /// XM_006712776 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation -23.70 181.68 -1.07 0.32 0.40 -4.59
215905_s_at 215905_s_at AL157420 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL157420.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434D199 (from clone DKFZp434D199); partial cds. /FEA=mRNA /GEN=DKFZp434D199 /PROD=hypothetical protein /DB_XREF=gi:7018441 /UG=Hs.10290 U5 snRNP-specific 40 kDa protein (hPrp8-binding) AL157420 small nuclear ribonucleoprotein 40kDa (U5) SNRNP40 9410 NM_004814 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005682 // U5 snRNP // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005732 // small nucleolar ribonucleoprotein complex // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 24.57 193.74 1.07 0.32 0.40 -4.59
201113_at 201113_at NM_003321 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003321.1 /DEF=Homo sapiens Tu translation elongation factor, mitochondrial (TUFM), mRNA. /FEA=mRNA /GEN=TUFM /PROD=Tu translation elongation factor, mitochondrial /DB_XREF=gi:4507732 /UG=Hs.12084 Tu translation elongation factor, mitochondrial /FL=gb:BC001633.1 gb:NM_003321.1 gb:L38995.1 NM_003321 Tu translation elongation factor, mitochondrial TUFM 7284 NM_003321 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -41.58 490.34 -1.07 0.32 0.40 -4.59
219911_s_at 219911_s_at NM_016354 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016354.1 /DEF=Homo sapiens solute carrier family 21 (organic anion transporter), member 12 (SLC21A12), mRNA. /FEA=mRNA /GEN=SLC21A12 /PROD=organic anion transporter OATP-E /DB_XREF=gi:7706516 /UG=Hs.235782 solute carrier family 21 (organic anion transporter), member 12 /FL=gb:AF205072.1 gb:AF187817.1 gb:AB031051.1 gb:NM_016354.1 NM_016354 solute carrier organic anion transporter family, member 4A1 SLCO4A1 28231 NM_016354 /// XM_005260203 /// XR_244115 /// XR_244116 /// XR_244117 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0043252 // sodium-independent organic anion transport // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -15.52 29.56 -1.07 0.32 0.40 -4.59
213564_x_at 213564_x_at BE042354 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE042354 /FEA=EST /DB_XREF=gi:8359407 /DB_XREF=est:ho19b09.x1 /CLONE=IMAGE:3037817 /UG=Hs.234489 lactate dehydrogenase B BE042354 lactate dehydrogenase B LDHB 3945 NM_001174097 /// NM_002300 /// XM_006719074 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006089 // lactate metabolic process // inferred from electronic annotation /// 0006090 // pyruvate metabolic process // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004457 // lactate dehydrogenase activity // inferred from electronic annotation /// 0004459 // L-lactate dehydrogenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 112.73 2275.99 1.06 0.32 0.40 -4.59
201216_at 201216_at NM_006817 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006817.2 /DEF=Homo sapiens endoplasmic reticulum lumenal protein (ERP28), mRNA. /FEA=mRNA /GEN=ERP28 /PROD=endoplasmic reticulum lumenal protein ERp28precursor /DB_XREF=gi:13124889 /UG=Hs.75841 endoplasmic reticulum lumenal protein /FL=gb:NM_006817.2 NM_006817 endoplasmic reticulum protein 29 ERP29 10961 NM_001034025 /// NM_006817 0006457 // protein folding // traceable author statement /// 0006886 // intracellular protein transport // traceable author statement /// 0009306 // protein secretion // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -33.27 337.11 -1.06 0.32 0.40 -4.59
210386_s_at 210386_s_at BC001906 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001906.1 /DEF=Homo sapiens, Similar to metaxin 1, clone MGC:2518, mRNA, complete cds. /FEA=mRNA /PROD=Similar to metaxin 1 /DB_XREF=gi:12804906 /UG=Hs.247551 metaxin 1 /FL=gb:BC001906.1 BC001906 metaxin 1 MTX1 4580 NM_002455 /// NM_198883 /// XM_006711338 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 18.25 223.28 1.06 0.32 0.40 -4.59
211402_x_at 211402_x_at AF004291 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF004291.1 /DEF=Homo sapiens germ cell nuclear factor (GCNF) mRNA, complete cds. /FEA=mRNA /GEN=GCNF /PROD=germ cell nuclear factor /DB_XREF=gi:2209118 /UG=Hs.278599 nuclear receptor subfamily 6, group A, member 1 /FL=gb:AF004291.1 AF004291 nuclear receptor subfamily 6, group A, member 1 NR6A1 2649 NM_001278546 /// NM_001489 /// NM_033334 /// NM_033335 /// XM_005251917 /// XM_005251918 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007276 // gamete generation // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0030522 // intracellular receptor signaling pathway // traceable author statement /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -14.82 43.61 -1.06 0.32 0.40 -4.59
200772_x_at 200772_x_at BF686442 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF686442 /FEA=EST /DB_XREF=gi:11971850 /DB_XREF=est:602143234F1 /CLONE=IMAGE:4304193 /UG=Hs.250655 prothymosin, alpha (gene sequence 28) /FL=gb:BC003510.1 gb:M26708.1 gb:M14630.1 gb:NM_002823.1 BF686442 prothymosin alpha-like /// prothymosin alpha-like /// microRNA 1244-1 /// microRNA 1244-2 /// microRNA 1244-3 /// prothymosin, alpha LOC100506248 /// LOC728026 /// MIR1244-1 /// MIR1244-2 /// MIR1244-3 /// PTMA 5757 /// 728026 /// 100302285 /// 100422872 /// 100422885 /// 100506248 NM_001099285 /// NM_002823 /// NR_036052 /// NR_036262 /// NR_036263 /// XM_001126659 /// XM_003960458 /// XM_005275719 /// XM_005276418 0006351 // transcription, DNA-templated // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay -85.85 1800.80 -1.06 0.32 0.40 -4.59
209526_s_at 209526_s_at AB029156 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB029156.1 /DEF=Homo sapiens HRP-3 mRNA, complete cds. /FEA=mRNA /GEN=HRP-3 /PROD=HRP-3 /DB_XREF=gi:6855467 /UG=Hs.127842 CGI-142 /FL=gb:AF151900.1 gb:AB029156.1 gb:NM_016073.1 AB029156 hepatoma-derived growth factor, related protein 3 HDGFRP3 50810 NM_016073 /// XM_006720554 0008283 // cell proliferation // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation -43.42 618.91 -1.06 0.32 0.40 -4.59
221607_x_at 221607_x_at BC001920 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001920.1 /DEF=Homo sapiens, actin, gamma 1, clone MGC:3728, mRNA, complete cds. /FEA=mRNA /PROD=actin, gamma 1 /DB_XREF=gi:12804934 /UG=Hs.14376 actin, gamma 1 /FL=gb:BC001920.1 BC001920 actin, beta /// actin, gamma 1 ACTB /// ACTG1 60 /// 71 NM_001101 /// NM_001199954 /// NM_001614 /// NR_037688 /// XM_006715764 /// XM_006722048 /// XM_006722049 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -409.82 4914.36 -1.06 0.32 0.41 -4.59
218389_s_at 218389_s_at NM_016022 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016022.1 /DEF=Homo sapiens CGI-78 protein (LOC51107), mRNA. /FEA=mRNA /GEN=LOC51107 /PROD=CGI-78 protein /DB_XREF=gi:7705786 /UG=Hs.108408 CGI-78 protein /FL=gb:AF151835.1 gb:NM_016022.1 NM_016022 APH1A gamma secretase subunit APH1A 51107 NM_001077628 /// NM_001243771 /// NM_001243772 /// NM_016022 /// NR_045033 /// NR_045034 /// NR_045035 /// XM_006711362 0001656 // metanephros development // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // inferred from mutant phenotype /// 0007220 // Notch receptor processing // traceable author statement /// 0016485 // protein processing // inferred from direct assay /// 0031293 // membrane protein intracellular domain proteolysis // inferred from mutant phenotype /// 0031293 // membrane protein intracellular domain proteolysis // traceable author statement /// 0042987 // amyloid precursor protein catabolic process // inferred from mutant phenotype /// 0042987 // amyloid precursor protein catabolic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 52.18 290.64 1.06 0.32 0.41 -4.59
214581_x_at 214581_x_at BE568134 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE568134 /FEA=EST /DB_XREF=gi:9811854 /DB_XREF=est:601341661F1 /CLONE=IMAGE:3683823 /UG=Hs.159651 death receptor 6 /FL=gb:AF068868.1 gb:NM_014452.1 BE568134 tumor necrosis factor receptor superfamily, member 21 TNFRSF21 27242 NM_014452 0001783 // B cell apoptotic process // inferred from sequence or structural similarity /// 0002250 // adaptive immune response // inferred from sequence or structural similarity /// 0002376 // immune system process // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006959 // humoral immune response // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0030889 // negative regulation of B cell proliferation // inferred from sequence or structural similarity /// 0031642 // negative regulation of myelination // inferred from mutant phenotype /// 0042130 // negative regulation of T cell proliferation // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from sequence or structural similarity /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048713 // regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0051402 // neuron apoptotic process // inferred from sequence or structural similarity /// 0071356 // cellular response to tumor necrosis factor // inferred from direct assay /// 0097252 // oligodendrocyte apoptotic process // inferred from sequence or structural similarity /// 2000663 // negative regulation of interleukin-5 secretion // inferred from sequence or structural similarity /// 2000666 // negative regulation of interleukin-13 secretion // inferred from sequence or structural similarity /// 2001180 // negative regulation of interleukin-10 secretion // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0031226 // intrinsic component of plasma membrane // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction 38.25 187.30 1.06 0.32 0.41 -4.59
219978_s_at 219978_s_at NM_018454 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018454.1 /DEF=Homo sapiens uncharacterized bone marrow protein BM037 (BM037), mRNA. /FEA=mRNA /GEN=BM037 /PROD=uncharacterized bone marrow protein BM037 /DB_XREF=gi:8922094 /UG=Hs.283649 uncharacterized bone marrow protein BM037 /FL=gb:AF217513.1 gb:NM_018454.1 NM_018454 nucleolar and spindle associated protein 1 NUSAP1 51203 NM_001129897 /// NM_001243142 /// NM_001243143 /// NM_001243144 /// NM_016359 /// NM_018454 /// XM_005254428 /// XM_005254429 /// XM_005254430 /// XM_005254431 /// XM_006720559 /// XM_006720560 /// XM_006720561 /// XM_006720562 /// XM_006720563 0000070 // mitotic sister chromatid segregation // inferred from direct assay /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000281 // mitotic cytokinesis // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // inferred from direct assay /// 0040001 // establishment of mitotic spindle localization // inferred from direct assay /// 0045840 // positive regulation of mitosis // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -24.25 137.68 -1.06 0.32 0.41 -4.59
201503_at 201503_at BG500067 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG500067 /FEA=EST /DB_XREF=gi:13461584 /DB_XREF=est:602545874F1 /CLONE=IMAGE:4668234 /UG=Hs.220689 Ras-GTPase-activating protein SH3-domain-binding protein /FL=gb:U32519.1 gb:NM_005754.1 BG500067 GTPase activating protein (SH3 domain) binding protein 1 G3BP1 10146 NM_005754 /// NM_198395 /// XM_006714749 /// XM_006714750 0006200 // ATP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010494 // cytoplasmic stress granule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // traceable author statement /// 0004004 // ATP-dependent RNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 20.75 447.93 1.06 0.32 0.41 -4.59
45526_g_at 45526_g_at AI246641 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI246641:qn65h10.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-1903171 /clone_end=3' /gb=AI246641 /gi=3842038 /ug=Hs.235980 /len=451 AI246641 N(alpha)-acetyltransferase 60, NatF catalytic subunit NAA60 79903 NM_001083600 /// NM_001083601 /// NM_024845 /// XM_006720949 /// XM_006720950 /// XM_006720951 /// XM_006720952 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0017196 // N-terminal peptidyl-methionine acetylation // inferred from direct assay /// 0043967 // histone H4 acetylation // inferred from direct assay 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004596 // peptide alpha-N-acetyltransferase activity // inferred from direct assay /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0010485 // H4 histone acetyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 21.18 419.11 1.06 0.32 0.41 -4.59
200728_at 200728_at BE566290 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE566290 /FEA=EST /DB_XREF=gi:9810010 /DB_XREF=est:601339864F1 /CLONE=IMAGE:3682406 /UG=Hs.42915 ARP2 (actin-related protein 2, yeast) homolog /FL=gb:AF006082.1 gb:NM_005722.1 BE566290 ARP2 actin-related protein 2 homolog (yeast) ACTR2 10097 NM_001005386 /// NM_005722 0006928 // cellular component movement // traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0008356 // asymmetric cell division // inferred from electronic annotation /// 0016482 // cytoplasmic transport // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0033206 // meiotic cytokinesis // inferred from electronic annotation /// 0034314 // Arp2/3 complex-mediated actin nucleation // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051321 // meiotic cell cycle // inferred from electronic annotation /// 0051653 // spindle localization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // inferred from reviewed computational analysis /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030478 // actin cap // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 85.67 818.94 1.05 0.32 0.41 -4.59
209154_at 209154_at AF234997 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF234997.1 /DEF=Homo sapiens glutaminase-interacting protein 3 mRNA, complete cds. /FEA=mRNA /PROD=glutaminase-interacting protein 3 /DB_XREF=gi:12005281 /UG=Hs.12956 Tax interaction protein 1 /FL=gb:AF028823.2 gb:NM_014604.1 gb:AF234997.1 AF234997 P2RX5-TAX1BP3 readthrough (NMD candidate) /// Tax1 (human T-cell leukemia virus type I) binding protein 3 P2RX5-TAX1BP3 /// TAX1BP3 30851 /// 100533970 NM_001204698 /// NM_014604 /// NR_037928 0006810 // transport // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from direct assay /// 0007399 // nervous system development // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // non-traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0032864 // activation of Cdc42 GTPase activity // inferred from direct assay /// 0034220 // ion transmembrane transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0035590 // purinergic nucleotide receptor signaling pathway // inferred from electronic annotation /// 0035590 // purinergic nucleotide receptor signaling pathway // non-traceable author statement /// 0050850 // positive regulation of calcium-mediated signaling // non-traceable author statement /// 2000009 // negative regulation of protein localization to cell surface // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005639 // integral component of nuclear inner membrane // /// 0005737 // cytoplasm // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001614 // purinergic nucleotide receptor activity // inferred from electronic annotation /// 0001614 // purinergic nucleotide receptor activity // non-traceable author statement /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0004931 // extracellular ATP-gated cation channel activity // non-traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // non-traceable author statement /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction 56.62 1117.19 1.05 0.33 0.41 -4.59
220658_s_at 220658_s_at NM_020183 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020183.1 /DEF=Homo sapiens transcription factor BMAL2 (LOC56938), mRNA. /FEA=mRNA /GEN=LOC56938 /PROD=transcription factor BMAL2 /DB_XREF=gi:9910367 /UG=Hs.222024 transcription factor BMAL2 /FL=gb:AB039921.1 gb:NM_020183.1 NM_020183 aryl hydrocarbon receptor nuclear translocator-like 2 ARNTL2 56938 NM_001248002 /// NM_001248003 /// NM_001248004 /// NM_001248005 /// NM_020183 /// XM_006719112 /// XM_006719113 /// XM_006719114 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from direct assay /// 0009649 // entrainment of circadian clock // non-traceable author statement /// 0042753 // positive regulation of circadian rhythm // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000982 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from direct assay -17.08 114.29 -1.05 0.33 0.41 -4.59
200663_at 200663_at NM_001780 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001780.1 /DEF=Homo sapiens CD63 antigen (melanoma 1 antigen) (CD63), mRNA. /FEA=mRNA /GEN=CD63 /PROD=CD63 antigen (melanoma 1 antigen) /DB_XREF=gi:4502678 /UG=Hs.76294 CD63 antigen (melanoma 1 antigen) /FL=gb:BC002349.1 gb:M59907.1 gb:NM_001780.1 NM_001780 CD63 molecule CD63 967 NM_001040034 /// NM_001257389 /// NM_001257390 /// NM_001257391 /// NM_001257392 /// NM_001257400 /// NM_001257401 /// NM_001267698 /// NM_001780 0002092 // positive regulation of receptor internalization // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0030168 // platelet activation // traceable author statement /// 0034613 // cellular protein localization // inferred from direct assay /// 0035646 // endosome to melanosome transport // inferred from mutant phenotype /// 0048757 // pigment granule maturation // inferred from mutant phenotype /// 1900746 // regulation of vascular endothelial growth factor signaling pathway // inferred from mutant phenotype /// 2000680 // regulation of rubidium ion transport // inferred from direct assay /// 2001046 // positive regulation of integrin-mediated signaling pathway // inferred from mutant phenotype 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0010008 // endosome membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031088 // platelet dense granule membrane // traceable author statement /// 0031226 // intrinsic component of plasma membrane // inferred from direct assay /// 0031902 // late endosome membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097487 // multivesicular body, internal vesicle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -113.72 1838.29 -1.05 0.33 0.41 -4.59
212335_at 212335_at AW167793 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW167793 /FEA=EST /DB_XREF=gi:6399401 /DB_XREF=est:xg56d07.x1 /CLONE=IMAGE:2632333 /UG=Hs.164036 Homo sapiens AKAP350C mRNA sequence, alternatively spliced AW167793 glucosamine (N-acetyl)-6-sulfatase GNS 2799 NM_002076 0005975 // carbohydrate metabolic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0042340 // keratan sulfate catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005764 // lysosome // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -27.25 308.88 -1.05 0.33 0.41 -4.59
218660_at 218660_at NM_003494 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003494.1 /DEF=Homo sapiens dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) (DYSF), mRNA. /FEA=mRNA /GEN=DYSF /PROD=dysferlin /DB_XREF=gi:4503430 /UG=Hs.143897 dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) /FL=gb:AF075575.1 gb:NM_003494.1 NM_003494 dysferlin DYSF 8291 NM_001130455 /// NM_001130976 /// NM_001130977 /// NM_001130978 /// NM_001130979 /// NM_001130980 /// NM_001130981 /// NM_001130982 /// NM_001130983 /// NM_001130984 /// NM_001130985 /// NM_001130986 /// NM_001130987 /// NM_003494 /// XM_005264584 /// XM_005264585 0001778 // plasma membrane repair // inferred from electronic annotation /// 0006906 // vesicle fusion // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from mutant phenotype /// 0008289 // lipid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 20.17 281.49 1.05 0.33 0.41 -4.59
202041_s_at 202041_s_at NM_004214 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004214.3 /DEF=Homo sapiens fibroblast growth factor (acidic) intracellular binding protein (FIBP), mRNA. /FEA=mRNA /GEN=FIBP /PROD=fibroblast growth factor (acidic) intracellularbinding protein /DB_XREF=gi:7262377 /UG=Hs.7768 fibroblast growth factor (acidic) intracellular binding protein /FL=gb:AF171944.1 gb:AF171945.1 gb:AF171946.1 gb:AF010187.2 gb:NM_004214.3 NM_004214 fibroblast growth factor (acidic) intracellular binding protein FIBP 9158 NM_004214 /// NM_198897 /// XM_005274391 /// XM_005274392 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0017134 // fibroblast growth factor binding // inferred from physical interaction 29.63 325.16 1.05 0.33 0.41 -4.59
200712_s_at 200712_s_at AI633566 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI633566 /FEA=EST /DB_XREF=gi:4684896 /DB_XREF=est:th68f09.x1 /CLONE=IMAGE:2123849 /UG=Hs.234279 microtubule-associated protein, RPEB family, member 1 /FL=gb:NM_012325.1 gb:U24166.1 AI633566 microtubule-associated protein, RP/EB family, member 1 MAPRE1 22919 NM_012325 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0031113 // regulation of microtubule polymerization // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // inferred from direct assay /// 0035372 // protein localization to microtubule // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0030981 // cortical microtubule cytoskeleton // inferred from direct assay /// 0031253 // cell projection membrane // inferred from electronic annotation /// 0035371 // microtubule plus-end // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051010 // microtubule plus-end binding // inferred from direct assay -27.90 234.22 -1.05 0.33 0.41 -4.59
211025_x_at 211025_x_at BC006229 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006229.1 /DEF=Homo sapiens, cytochrome c oxidase subunit Vb, clone MGC:10622, mRNA, complete cds. /FEA=mRNA /PROD=cytochrome c oxidase subunit Vb /DB_XREF=gi:13623258 /FL=gb:BC006229.1 BC006229 cytochrome c oxidase subunit Vb COX5B 1329 NM_001862 0007585 // respiratory gaseous exchange // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -24.45 278.05 -1.05 0.33 0.41 -4.59
217848_s_at 217848_s_at NM_021129 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021129.1 /DEF=Homo sapiens pyrophosphatase (inorganic) (PP), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=PP /PROD=pyrophosphatase (inorganic) /DB_XREF=gi:11056043 /UG=Hs.184011 pyrophosphatase (inorganic) /FL=gb:NM_021129.1 gb:AF217186.1 gb:BC001022.1 gb:AF154065.1 gb:AB026723.1 gb:AF119665.1 NM_021129 pyrophosphatase (inorganic) 1 PPA1 5464 NM_021129 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006796 // phosphate-containing compound metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0071344 // diphosphate metabolic process // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity // not recorded /// 0016462 // pyrophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -118.10 596.85 -1.05 0.33 0.41 -4.59
207714_s_at 207714_s_at NM_004353 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004353.1 /DEF=Homo sapiens serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1 (SERPINH1), mRNA. /FEA=mRNA /GEN=SERPINH1 /PROD=serine (or cysteine) proteinase inhibitor, cladeH (heat shock protein 47), member 1 /DB_XREF=gi:4757923 /UG=Hs.241579 serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1 /FL=gb:NM_004353.1 NM_004353 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) SERPINH1 871 NM_001207014 /// NM_001235 /// XM_006718727 /// XM_006718728 /// XM_006718729 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0030162 // regulation of proteolysis // not recorded /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // inferred from electronic annotation /// 0051604 // protein maturation // inferred from electronic annotation 0005581 // collagen trimer // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation -29.65 743.98 -1.05 0.33 0.41 -4.59
220605_s_at 220605_s_at NM_012237 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012237.2 /DEF=Homo sapiens sirtuin (silent mating type information regulation 2, S.cerevisiae, homolog) 2 (SIRT2), transcript variant 1, mRNA. /FEA=mRNA /GEN=SIRT2 /PROD=sirtuin 2, isoform 1 /DB_XREF=gi:13775599 /UG=Hs.44017 sirtuin (silent mating type information regulation 2, S.cerevisiae, homolog) 2 /FL=gb:AF083107.2 gb:NM_012237.2 NM_012237 sirtuin 2 SIRT2 22933 NM_001193286 /// NM_012237 /// NM_030593 /// NR_034146 /// XM_006723111 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000183 // chromatin silencing at rDNA // non-traceable author statement /// 0002376 // immune system process // inferred from electronic annotation /// 0006342 // chromatin silencing // non-traceable author statement /// 0006348 // chromatin silencing at telomere // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // non-traceable author statement /// 0006471 // protein ADP-ribosylation // traceable author statement /// 0006476 // protein deacetylation // inferred from direct assay /// 0006476 // protein deacetylation // inferred from mutant phenotype /// 0006914 // autophagy // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007096 // regulation of exit from mitosis // non-traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010507 // negative regulation of autophagy // inferred from mutant phenotype /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // inferred from sequence or structural similarity /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred from mutant phenotype /// 0016458 // gene silencing // non-traceable author statement /// 0016575 // histone deacetylation // inferred from direct assay /// 0016575 // histone deacetylation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022011 // myelination in peripheral nervous system // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031641 // regulation of myelination // inferred from sequence or structural similarity /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0034599 // cellular response to oxidative stress // inferred from sequence or structural similarity /// 0034983 // peptidyl-lysine deacetylation // inferred from direct assay /// 0035729 // cellular response to hepatocyte growth factor stimulus // inferred from direct assay /// 0042177 // negative regulation of protein catabolic process // inferred from mutant phenotype /// 0042325 // regulation of phosphorylation // non-traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0043388 // positive regulation of DNA binding // inferred from sequence or structural similarity /// 0043491 // protein kinase B signaling // inferred from mutant phenotype /// 0044242 // cellular lipid catabolic process // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045836 // positive regulation of meiosis // inferred from sequence or structural similarity /// 0045843 // negative regulation of striated muscle tissue development // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048012 // hepatocyte growth factor receptor signaling pathway // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0051775 // response to redox state // non-traceable author statement /// 0051781 // positive regulation of cell division // inferred from sequence or structural similarity /// 0051987 // positive regulation of attachment of spindle microtubules to kinetochore // inferred from sequence or structural similarity /// 0061428 // negative regulation of transcription from RNA polymerase II promoter in response to hypoxia // inferred from mutant phenotype /// 0061433 // cellular response to caloric restriction // inferred from sequence or structural similarity /// 0070446 // negative regulation of oligodendrocyte progenitor proliferation // inferred from sequence or structural similarity /// 0070932 // histone H3 deacetylation // inferred from mutant phenotype /// 0070933 // histone H4 deacetylation // inferred from direct assay /// 0071219 // cellular response to molecule of bacterial origin // inferred from direct assay /// 0071456 // cellular response to hypoxia // inferred from direct assay /// 0071872 // cellular response to epinephrine stimulus // inferred from sequence or structural similarity /// 0090042 // tubulin deacetylation // inferred from direct assay /// 0090042 // tubulin deacetylation // inferred from mutant phenotype /// 0090042 // tubulin deacetylation // inferred from sequence or structural similarity /// 1900119 // positive regulation of execution phase of apoptosis // inferred from sequence or structural similarity /// 1900195 // positive regulation of oocyte maturation // inferred from sequence or structural similarity /// 1900425 // negative regulation of defense response to bacterium // inferred from mutant phenotype /// 2000378 // negative regulation of reactive oxygen species metabolic process // inferred from sequence or structural similarity /// 2000777 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005677 // chromatin silencing complex // non-traceable author statement /// 0005694 // chromosome // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005814 // centriole // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0033010 // paranodal junction // inferred from sequence or structural similarity /// 0033270 // paranode region of axon // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from sequence or structural similarity /// 0043209 // myelin sheath // inferred from sequence or structural similarity /// 0043219 // lateral loop // inferred from sequence or structural similarity /// 0043220 // Schmidt-Lanterman incisure // inferred from sequence or structural similarity /// 0044224 // juxtaparanode region of axon // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0072686 // mitotic spindle // inferred from direct assay /// 0072687 // meiotic spindle // inferred from sequence or structural similarity /// 0097386 // glial cell projection // inferred from sequence or structural similarity 0003682 // chromatin binding // inferred from direct assay /// 0003950 // NAD+ ADP-ribosyltransferase activity // traceable author statement /// 0004407 // histone deacetylase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0017136 // NAD-dependent histone deacetylase activity // inferred from direct assay /// 0033558 // protein deacetylase activity // inferred from direct assay /// 0033558 // protein deacetylase activity // inferred from mutant phenotype /// 0034979 // NAD-dependent protein deacetylase activity // inferred from direct assay /// 0034979 // NAD-dependent protein deacetylase activity // inferred from mutant phenotype /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0042903 // tubulin deacetylase activity // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046970 // NAD-dependent histone deacetylase activity (H4-K16 specific) // inferred from direct assay /// 0051287 // NAD binding // inferred from electronic annotation /// 0070403 // NAD+ binding // inferred from direct assay 23.82 159.89 1.05 0.33 0.41 -4.59
214035_x_at 214035_x_at AA308853 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA308853 /FEA=EST /DB_XREF=gi:1961191 /DB_XREF=est:EST179659 /UG=Hs.251928 nuclear pore complex interacting protein AA308853 GPS, PLAT and transmembrane domain-containing protein LOC399491 399491 XR_248294 /// XR_430728 /// XR_433252 0001502 // cartilage condensation // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from sequence or structural similarity /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from sequence or structural similarity /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007156 // homophilic cell adhesion // traceable author statement /// 0007160 // cell-matrix adhesion // traceable author statement /// 0007161 // calcium-independent cell-matrix adhesion // traceable author statement /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0021510 // spinal cord development // inferred from expression pattern /// 0021915 // neural tube development // inferred from expression pattern /// 0031659 // positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle // inferred from direct assay /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from sequence or structural similarity /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from electronic annotation /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from sequence or structural similarity /// 0043588 // skin development // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048565 // digestive tract development // inferred from expression pattern /// 0048754 // branching morphogenesis of an epithelial tube // inferred from direct assay /// 0048806 // genitalia development // inferred from expression pattern /// 0050982 // detection of mechanical stimulus // /// 0050982 // detection of mechanical stimulus // inferred from electronic annotation /// 0050982 // detection of mechanical stimulus // inferred from sequence or structural similarity /// 0051216 // cartilage development // inferred from expression pattern /// 0060236 // regulation of mitotic spindle organization // inferred from electronic annotation /// 0060428 // lung epithelium development // inferred from expression pattern /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0060674 // placenta blood vessel development // inferred from sequence or structural similarity /// 0061136 // regulation of proteasomal protein catabolic process // inferred from direct assay /// 0070588 // calcium ion transmembrane transport // /// 0072001 // renal system development // inferred from electronic annotation /// 0072164 // mesonephric tubule development // inferred from expression pattern /// 0072177 // mesonephric duct development // inferred from expression pattern /// 0072205 // metanephric collecting duct development // inferred from expression pattern /// 0072218 // metanephric ascending thin limb development // inferred from expression pattern /// 0072237 // metanephric proximal tubule development // inferred from expression pattern /// 0072287 // metanephric distal tubule morphogenesis // inferred from expression pattern 0002133 // polycystin complex // inferred from electronic annotation /// 0002133 // polycystin complex // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0031512 // motile primary cilium // inferred from electronic annotation /// 0031512 // motile primary cilium // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005261 // cation channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from sequence or structural similarity /// 0005262 // calcium channel activity // /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction -68.93 383.24 -1.05 0.33 0.41 -4.59
201646_at 201646_at AA885297 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA885297 /FEA=EST /DB_XREF=gi:2994374 /DB_XREF=est:al58h03.s1 /CLONE=IMAGE:1461557 /UG=Hs.323567 CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 (lysosomal integral membrane protein II) /FL=gb:D12676.1 gb:NM_005506.1 AA885297 scavenger receptor class B, member 2 SCARB2 950 NM_001204255 /// NM_005506 0006622 // protein targeting to lysosome // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043202 // lysosomal lumen // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction -41.55 226.55 -1.05 0.33 0.41 -4.59
214749_s_at 214749_s_at AK000818 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000818.1 /DEF=Homo sapiens cDNA FLJ20811 fis, clone ADSE01435. /FEA=mRNA /DB_XREF=gi:7021128 /UG=Hs.83530 hypothetical protein AK000818 armadillo repeat containing, X-linked 6 ARMCX6 54470 NM_001009584 /// NM_001184768 /// NM_019007 /// NR_033669 /// NR_033670 /// XM_006724665 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016082 // synaptic vesicle priming // inferred from electronic annotation /// 0045921 // positive regulation of exocytosis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 56.88 604.79 1.04 0.33 0.41 -4.59
204173_at 204173_at NM_002475 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002475.1 /DEF=Homo sapiens myosin, light polypeptide 1, alkali; skeletal, fast (MYL1), mRNA. /FEA=mRNA /GEN=MYL1 /PROD=myosin, light polypeptide 1, alkali; skeletal,fast /DB_XREF=gi:4505302 /UG=Hs.90318 myosin, light polypeptide 1, alkali; skeletal, fast /FL=gb:M31211.1 gb:NM_002475.1 NM_002475 myosin, light chain 6B, alkali, smooth muscle and non-muscle MYL6B 140465 NM_001199629 /// NM_002475 0006936 // muscle contraction // traceable author statement /// 0007519 // skeletal muscle tissue development // traceable author statement /// 0008152 // metabolic process // traceable author statement /// 0030049 // muscle filament sliding // traceable author statement 0005829 // cytosol // traceable author statement /// 0005859 // muscle myosin complex // traceable author statement /// 0016459 // myosin complex // traceable author statement /// 0016461 // unconventional myosin complex // traceable author statement 0003774 // motor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008307 // structural constituent of muscle // traceable author statement -24.50 274.82 -1.04 0.33 0.41 -4.59
204313_s_at 204313_s_at AA161486 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA161486 /FEA=EST /DB_XREF=gi:1735796 /DB_XREF=est:zq42d09.s1 /CLONE=IMAGE:632369 /UG=Hs.79194 cAMP responsive element binding protein 1 /FL=gb:M27691.1 gb:NM_004379.1 AA161486 cAMP responsive element binding protein 1 CREB1 1385 NM_004379 /// NM_134442 /// XR_241289 /// XR_241290 /// XR_241292 /// XR_427071 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007595 // lactation // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0008361 // regulation of cell size // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010033 // response to organic substance // inferred from direct assay /// 0010944 // negative regulation of transcription by competitive promoter binding // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0033363 // secretory granule organization // inferred from electronic annotation /// 0033762 // response to glucagon // inferred from sequence or structural similarity /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045600 // positive regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046889 // positive regulation of lipid biosynthetic process // inferred from sequence or structural similarity /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0060428 // lung epithelium development // inferred from electronic annotation /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060509 // Type I pneumocyte differentiation // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred by curator /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003712 // transcription cofactor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0035497 // cAMP response element binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -19.00 117.02 -1.04 0.33 0.41 -4.59
215936_s_at 215936_s_at AK001657 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001657.1 /DEF=Homo sapiens cDNA FLJ10795 fis, clone NT2RP4000638. /FEA=mRNA /DB_XREF=gi:7023048 /UG=Hs.12144 KIAA1033 protein AK001657 KIAA1033 KIAA1033 23325 NM_001293640 /// NM_015275 /// XM_005268742 /// XM_005268743 /// XM_005268744 /// XM_005268745 /// XM_005268746 /// XR_245916 0016197 // endosomal transport // inferred from mutant phenotype /// 0016197 // endosomal transport // inferred from sequence or structural similarity 0005768 // endosome // inferred from direct assay /// 0071203 // WASH complex // inferred from direct assay 29.17 136.09 1.04 0.33 0.41 -4.59
217142_at 217142_at AL035687 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL035687 /DEF=Human DNA sequence from clone RP1-142O9 on chromosome 6p11.1-12.3. Contains an EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) pseudogene, a pseudogene similar to part of ZNF216, ESTs, STSs, GSSs and an aat repeat polymorphism /FEA=CDS /DB_XREF=gi:5295830 /UG=Hs.247893 Human DNA sequence from clone RP1-142O9 on chromosome 6p11.1-12.3. Contains an EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) pseudogene, a pseudogene similar to part of ZNF216, ESTs, STSs, GSSs and an aat repeat polymorphism AL035687 EEF1A1P42 14.98 89.79 1.04 0.33 0.41 -4.59
203390_s_at 203390_s_at NM_002254 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002254.1 /DEF=Homo sapiens kinesin family member 3C (KIF3C), mRNA. /FEA=mRNA /GEN=KIF3C /PROD=kinesin family member 3C /DB_XREF=gi:4504868 /UG=Hs.21611 kinesin family member 3C /FL=gb:AF018164.1 gb:AF035621.1 gb:NM_002254.1 NM_002254 kinesin family member 3C KIF3C 3797 NM_002254 /// XM_005264299 0007018 // microtubule-based movement // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // traceable author statement /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation -24.82 157.31 -1.04 0.33 0.41 -4.59
222297_x_at 222297_x_at AV738806 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV738806 /FEA=EST /DB_XREF=gi:10856387 /DB_XREF=est:AV738806 /CLONE=CBCAWB04 /UG=Hs.317387 ESTs, Weakly similar to RL18_HUMAN 60S RIBOSOMAL PROTEIN L1 H.sapiens AV738806 ribosomal protein L18 pseudogene 10 /// RPL18P10 /// RPL18P10 22.80 84.78 1.04 0.33 0.41 -4.59
207974_s_at 207974_s_at NM_006930 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006930.1 /DEF=Homo sapiens S-phase kinase-associated protein 1A (p19A) (SKP1A), mRNA. /FEA=mRNA /GEN=SKP1A /PROD=S-phase kinase-associated protein 1A (p19A) /DB_XREF=gi:5902087 /UG=Hs.227950 S-phase kinase-associated protein 1A (p19A) /FL=gb:NM_006930.1 gb:U33760.1 NM_006930 S-phase kinase-associated protein 1 SKP1 6500 NM_006930 /// NM_170679 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0035518 // histone H2A monoubiquitination // inferred from direct assay /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay /// 0031467 // Cul7-RING ubiquitin ligase complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 45.77 838.96 1.04 0.33 0.41 -4.59
215693_x_at 215693_x_at AL512707 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL512707.1 /DEF=Homo sapiens mRNA; cDNA DKFZp667N057 (from clone DKFZp667N057). /FEA=mRNA /DB_XREF=gi:12224949 /UG=Hs.65234 hypothetical protein FLJ20596 AL512707 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 DDX27 55661 NM_017895 /// XM_006723815 0006200 // ATP catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -26.98 172.96 -1.03 0.33 0.42 -4.59
208912_s_at 208912_s_at BC001362 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001362.1 /DEF=Homo sapiens, 2,3-cyclic nucleotide 3 phosphodiesterase, clone MGC:2262, mRNA, complete cds. /FEA=mRNA /PROD=2,3-cyclic nucleotide 3 phosphodiesterase /DB_XREF=gi:12655028 /UG=Hs.150741 2,3-cyclic nucleotide 3 phosphodiesterase /FL=gb:BC001362.1 gb:M19650.1 BC001362 2',3'-cyclic nucleotide 3' phosphodiesterase CNP 1267 NM_033133 /// XM_006721701 /// XM_006721702 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0009214 // cyclic nucleotide catabolic process // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0030900 // forebrain development // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031143 // pseudopodium // inferred from electronic annotation /// 0035748 // myelin sheath abaxonal region // inferred from electronic annotation /// 0035749 // myelin sheath adaxonal region // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030551 // cyclic nucleotide binding // inferred from electronic annotation 29.50 198.93 1.03 0.33 0.42 -4.59
201189_s_at 201189_s_at NM_002224 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002224.1 /DEF=Homo sapiens inositol 1,4,5-triphosphate receptor, type 3 (ITPR3), mRNA. /FEA=mRNA /GEN=ITPR3 /PROD=inositol 1,4,5-triphosphate receptor, type 3 /DB_XREF=gi:4504794 /UG=Hs.77515 inositol 1,4,5-triphosphate receptor, type 3 /FL=gb:D26351.1 gb:NM_002224.1 gb:U01062.1 NM_002224 inositol 1,4,5-trisphosphate receptor, type 3 ITPR3 3710 NM_002224 /// XM_006715091 /// XM_006715092 /// XM_006715093 0002082 // regulation of oxidative phosphorylation // inferred from mutant phenotype /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from sequence or structural similarity /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0007613 // memory // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048016 // inositol phosphate-mediated signaling // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050913 // sensory perception of bitter taste // inferred from electronic annotation /// 0050916 // sensory perception of sweet taste // inferred from electronic annotation /// 0050917 // sensory perception of umami taste // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051291 // protein heterooligomerization // inferred from sequence or structural similarity /// 0051592 // response to calcium ion // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060402 // calcium ion transport into cytosol // inferred from sequence or structural similarity /// 0070588 // calcium ion transmembrane transport // inferred from electronic annotation /// 2001014 // regulation of skeletal muscle cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005903 // brush border // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031095 // platelet dense tubular network membrane // traceable author statement /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043209 // myelin sheath // inferred from sequence or structural similarity /// 0043235 // receptor complex // inferred from direct assay /// 0045177 // apical part of cell // inferred from sequence or structural similarity 0000822 // inositol hexakisphosphate binding // inferred from sequence or structural similarity /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005218 // intracellular ligand-gated calcium channel activity // inferred from sequence or structural similarity /// 0005220 // inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from direct assay /// 0005220 // inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0043533 // inositol 1,3,4,5 tetrakisphosphate binding // inferred from sequence or structural similarity /// 0070679 // inositol 1,4,5 trisphosphate binding // inferred from direct assay -17.65 158.12 -1.03 0.33 0.42 -4.59
213757_at 213757_at AA393940 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA393940 /FEA=EST /DB_XREF=gi:2046909 /DB_XREF=est:zv64f10.r1 /CLONE=IMAGE:758443 /UG=Hs.119140 eukaryotic translation initiation factor 5A AA393940 -178.20 683.77 -1.03 0.33 0.42 -4.59
206055_s_at 206055_s_at NM_003090 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003090.1 /DEF=Homo sapiens small nuclear ribonucleoprotein polypeptide A (SNRPA1), mRNA. /FEA=mRNA /GEN=SNRPA1 /PROD=small nuclear ribonucleoprotein polypeptide A /DB_XREF=gi:4507120 /UG=Hs.80506 small nuclear ribonucleoprotein polypeptide A /FL=gb:NM_003090.1 NM_003090 small nuclear ribonucleoprotein polypeptide A' SNRPA1 6627 NM_003090 /// XR_243213 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from direct assay /// 0005686 // U2 snRNP // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // traceable author statement /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 27.05 235.57 1.03 0.33 0.42 -4.59
220617_s_at 220617_s_at NM_018181 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018181.1 /DEF=Homo sapiens hypothetical protein FLJ10697 (FLJ10697), mRNA. /FEA=mRNA /GEN=FLJ10697 /PROD=hypothetical protein FLJ10697 /DB_XREF=gi:8922593 /UG=Hs.104557 hypothetical protein FLJ10697 /FL=gb:NM_018181.1 NM_018181 zinc finger protein 532 ZNF532 55205 NM_018181 /// XM_005266722 /// XM_005266723 /// XM_005266724 /// XM_006722495 /// XM_006722496 /// XM_006722497 /// XM_006722498 /// XM_006722499 /// XR_430077 /// XR_430078 /// XR_430079 /// XR_430080 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -16.70 118.20 -1.03 0.33 0.42 -4.59
202429_s_at 202429_s_at AL353950 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL353950.1 /DEF=Homo sapiens mRNA; cDNA DKFZp761L0516 (from clone DKFZp761L0516); complete cds. /FEA=mRNA /GEN=DKFZp761L0516 /PROD=hypothetical protein /DB_XREF=gi:7669991 /UG=Hs.272458 protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha) /FL=gb:J05480.1 gb:L14778.1 gb:NM_000944.1 gb:AL353950.1 AL353950 protein phosphatase 3, catalytic subunit, alpha isozyme PPP3CA 5530 NM_000944 /// NM_001130691 /// NM_001130692 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // non-traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0014883 // transition between fast and slow fiber // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0033173 // calcineurin-NFAT signaling cascade // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from direct assay /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042110 // T cell activation // traceable author statement /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005955 // calcineurin complex // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // non-traceable author statement /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // non-traceable author statement /// 0008144 // drug binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0033192 // calmodulin-dependent protein phosphatase activity // inferred from direct assay /// 0033192 // calmodulin-dependent protein phosphatase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from physical interaction -18.45 197.03 -1.03 0.34 0.42 -4.59
201851_at 201851_at NM_003025 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003025.1 /DEF=Homo sapiens SH3-domain GRB2-like 1 (SH3GL1), mRNA. /FEA=mRNA /GEN=SH3GL1 /PROD=SH3-domain GRB2-like 1 /DB_XREF=gi:4506928 /UG=Hs.97616 SH3-domain GRB2-like 1 /FL=gb:BC001270.1 gb:U65999.1 gb:NM_003025.1 NM_003025 SH3-domain GRB2-like 1 SH3GL1 6455 NM_001199943 /// NM_001199944 /// NM_003025 0006897 // endocytosis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007417 // central nervous system development // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0002102 // podosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0019902 // phosphatase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 19.15 229.20 1.03 0.34 0.42 -4.59
202913_at 202913_at AI090007 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI090007 /FEA=EST /DB_XREF=gi:3429066 /DB_XREF=est:qb13h01.x1 /CLONE=IMAGE:1696177 /UG=Hs.47822 Rho guanine exchange factor (GEF) 11 /FL=gb:AB002378.1 gb:NM_014784.1 AI090007 Rho guanine nucleotide exchange factor (GEF) 11 ARHGEF11 9826 NM_014784 /// NM_198236 /// XM_005245629 /// XM_005245633 /// XM_006711659 /// XM_006711660 /// XM_006711661 /// XM_006711662 /// XM_006711663 /// XM_006711664 /// XM_006711665 0000910 // cytokinesis // non-traceable author statement /// 0001558 // regulation of cell growth // non-traceable author statement /// 0006928 // cellular component movement // non-traceable author statement /// 0006941 // striated muscle contraction // non-traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from direct assay /// 0007411 // axon guidance // traceable author statement /// 0030010 // establishment of cell polarity // non-traceable author statement /// 0030036 // actin cytoskeleton organization // non-traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // traceable author statement /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005622 // intracellular // inferred by curator /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0001664 // G-protein coupled receptor binding // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 16.57 72.06 1.03 0.34 0.42 -4.59
203593_at 203593_at NM_012120 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012120.1 /DEF=Homo sapiens CD2-associated protein (CD2AP), mRNA. /FEA=mRNA /GEN=CD2AP /PROD=CD2-associated protein /DB_XREF=gi:11321633 /UG=Hs.265561 CD2-associated protein /FL=gb:NM_012120.1 gb:AF146277.1 gb:AF164377.1 NM_012120 CD2-associated protein CD2AP 23607 NM_012120 /// XM_005248976 /// XM_005248977 0006461 // protein complex assembly // traceable author statement /// 0006930 // substrate-dependent cell migration, cell extension // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0016050 // vesicle organization // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0048259 // regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0001726 // ruffle // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005172 // vascular endothelial growth factor receptor binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from electronic annotation -16.70 140.95 -1.03 0.34 0.42 -4.59
201608_s_at 201608_s_at NM_007062 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007062.1 /DEF=Homo sapiens nuclear phosphoprotein similar to S. cerevisiae PWP1 (PWP1), mRNA. /FEA=mRNA /GEN=PWP1 /PROD=nuclear phosphoprotein similar to S. cerevisiaePWP1 /DB_XREF=gi:5902033 /UG=Hs.172589 nuclear phosphoprotein similar to S. cerevisiae PWP1 /FL=gb:BC001652.1 gb:L07758.1 gb:NM_007062.1 NM_007062 PWP1 homolog (S. cerevisiae) PWP1 11137 NM_007062 0006351 // transcription, DNA-templated // traceable author statement 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 41.55 425.85 1.03 0.34 0.42 -4.59
210665_at 210665_at AF021834 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF021834.1 /DEF=Homo sapiens tissue factor pathway inhibitor beta (TFPIbeta) mRNA, complete cds. /FEA=mRNA /GEN=TFPIbeta /PROD=tissue factor pathway inhibitor beta /DB_XREF=gi:4103170 /UG=Hs.170279 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) /FL=gb:AF021834.1 AF021834 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) TFPI 7035 NM_001032281 /// NM_006287 /// XM_005246818 /// XM_005246819 /// XM_005246820 /// XM_006712720 0007596 // blood coagulation // traceable author statement /// 0007598 // blood coagulation, extrinsic pathway // traceable author statement /// 0007599 // hemostasis // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 18.32 114.34 1.03 0.34 0.42 -4.59
201100_s_at 201100_s_at NM_004652 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004652.2 /DEF=Homo sapiens ubiquitin specific protease 9, X chromosome (Drosophila fat facets related) (USP9X), transcript variant 1, mRNA. /FEA=mRNA /GEN=USP9X /PROD=Drosophila fat facets related, X-linked, isoform1 /DB_XREF=gi:11641424 /UG=Hs.77578 ubiquitin specific protease 9, X chromosome (Drosophila fat facets related) /FL=gb:NM_004652.2 NM_004652 ubiquitin specific peptidase 9, X-linked USP9X 8239 NM_001039590 /// NM_001039591 /// NM_004652 /// NM_021906 /// XM_005272675 /// XM_005272676 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001764 // neuron migration // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007292 // female gamete generation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016579 // protein deubiquitination // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0048675 // axon extension // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004221 // ubiquitin thiolesterase activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from physical interaction -39.12 292.99 -1.03 0.34 0.42 -4.59
212120_at 212120_at BE897886 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE897886 /FEA=EST /DB_XREF=gi:10363799 /DB_XREF=est:601440558F1 /CLONE=IMAGE:3925214 /UG=Hs.166982 phosphatidylinositol glycan, class F BE897886 ras homolog family member Q RHOQ 23433 NM_012249 /// XM_005264229 0006184 // GTP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032956 // regulation of actin cytoskeleton organization // inferred by curator /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051491 // positive regulation of filopodium assembly // inferred from direct assay /// 0090005 // negative regulation of establishment of protein localization to plasma membrane // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005884 // actin filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005522 // profilin binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0032427 // GBD domain binding // inferred from physical interaction 18.17 195.06 1.03 0.34 0.42 -4.59
202012_s_at 202012_s_at AA196245 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA196245 /FEA=EST /DB_XREF=gi:1791879 /DB_XREF=est:zp92h05.s1 /CLONE=IMAGE:627705 /UG=Hs.75334 exostoses (multiple) 2 /FL=gb:U64511.1 gb:NM_000401.1 AA196245 exostosin glycosyltransferase 2 EXT2 2132 NM_000401 /// NM_001178083 /// NM_207122 0001503 // ossification // inferred from mutant phenotype /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // inferred from direct assay /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from mutant phenotype /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0033692 // cellular polysaccharide biosynthetic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031227 // intrinsic component of endoplasmic reticulum membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008375 // acetylglucosaminyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from direct assay /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0042328 // heparan sulfate N-acetylglucosaminyltransferase activity // non-traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0050508 // glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0050509 // N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity // non-traceable author statement -42.55 255.85 -1.03 0.34 0.42 -4.59
212396_s_at 212396_s_at AI143233 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI143233 /FEA=EST /DB_XREF=gi:3665042 /DB_XREF=est:qb76e09.x1 /CLONE=IMAGE:1706056 /UG=Hs.154797 KIAA0090 protein AI143233 ER membrane protein complex subunit 1 EMC1 23065 NM_001271427 /// NM_001271428 /// NM_001271429 /// NM_015047 /// XM_005245787 /// XM_005245788 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0072546 // ER membrane protein complex // inferred from direct assay -22.25 162.65 -1.02 0.34 0.42 -4.59
212329_at 212329_at D83782 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D83782.1 /DEF=Human mRNA for KIAA0199 gene, partial cds. /FEA=mRNA /GEN=KIAA0199 /DB_XREF=gi:1228046 /UG=Hs.78442 SREBP CLEAVAGE-ACTIVATING PROTEIN D83782 SREBF chaperone SCAP 22937 NM_012235 /// XM_005264967 /// XM_005264968 /// XM_005264969 /// XM_005264970 /// XM_005264971 /// XM_005264972 /// XM_006713034 0001666 // response to hypoxia // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0032933 // SREBP signaling pathway // inferred from mutant phenotype /// 0042304 // regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045541 // negative regulation of cholesterol biosynthetic process // non-traceable author statement /// 0045716 // positive regulation of low-density lipoprotein particle receptor biosynthetic process // non-traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // non-traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008158 // hedgehog receptor activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // non-traceable author statement 14.95 98.88 1.02 0.34 0.42 -4.59
201042_at 201042_at AL031651 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031651 /DEF=Human DNA sequence from clone RP5-1054A22 on chromosome 20q11.22-12 Contains two isoforms of the gene for TGM2 (transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase), ESTs, STSs, GSSs and a CpG island /FEA=mRNA_1 /DB_XREF=gi:6065866 /UG=Hs.8265 transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) /FL=gb:M55153.1 gb:NM_004613.1 AL031651 transglutaminase 2 TGM2 7052 NM_004613 /// NM_198951 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018153 // isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine // inferred from electronic annotation /// 0032471 // negative regulation of endoplasmic reticulum calcium ion concentration // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0043277 // apoptotic cell clearance // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from sequence or structural similarity /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// 0051561 // positive regulation of mitochondrial calcium ion concentration // inferred from mutant phenotype /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060662 // salivary gland cavitation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from mutant phenotype /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -63.02 705.84 -1.02 0.34 0.42 -4.59
218047_at 218047_at NM_024586 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024586.1 /DEF=Homo sapiens hypothetical protein FLJ12492 (FLJ12492), mRNA. /FEA=mRNA /GEN=FLJ12492 /PROD=hypothetical protein FLJ12492 /DB_XREF=gi:13375771 /UG=Hs.21938 hypothetical protein FLJ12492 /FL=gb:NM_024586.1 NM_024586 oxysterol binding protein-like 9 OSBPL9 114883 NM_024586 /// NM_148904 /// NM_148905 /// NM_148906 /// NM_148907 /// NM_148908 /// NM_148909 /// NR_036662 /// XM_006710318 /// XM_006710319 /// XM_006710320 /// XM_006710321 /// XM_006710322 /// XM_006710323 /// XM_006710324 /// XM_006710325 /// XM_006710326 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 21.40 329.40 1.02 0.34 0.43 -4.59
201773_at 201773_at NM_015339 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015339.1 /DEF=Homo sapiens activity-dependent neuroprotective protein (ADNP), mRNA. /FEA=mRNA /GEN=ADNP /PROD=activity-dependent neuroprotective protein /DB_XREF=gi:12229216 /UG=Hs.3657 activity-dependent neuroprotective protein /FL=gb:AF250860.1 gb:NM_015339.1 NM_015339 activity-dependent neuroprotector homeobox ADNP 23394 NM_001282531 /// NM_001282532 /// NM_015339 /// NM_181442 /// XM_006723759 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -34.40 291.52 -1.02 0.34 0.43 -4.59
200991_s_at 200991_s_at NM_014748 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014748.1 /DEF=Homo sapiens KIAA0064 gene product (KIAA0064), mRNA. /FEA=mRNA /GEN=KIAA0064 /PROD=KIAA0064 gene product /DB_XREF=gi:7661889 /UG=Hs.278569 sorting nexin 17 /FL=gb:BC002524.1 gb:BC002610.1 gb:D31764.1 gb:NM_014748.1 NM_014748 sorting nexin 17 SNX17 9784 NM_001267059 /// NM_001267060 /// NM_001267061 /// NM_014748 /// NR_049782 /// NR_049783 /// NR_049784 /// NR_049785 /// NR_049786 /// NR_049787 /// NR_049788 /// XM_006712154 0001525 // angiogenesis // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006707 // cholesterol catabolic process // inferred by curator /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016197 // endosomal transport // non-traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0021545 // cranial nerve development // inferred from electronic annotation /// 0021631 // optic nerve morphogenesis // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // inferred from sequence or structural similarity /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from sequence or structural similarity /// 0030010 // establishment of cell polarity // inferred from electronic annotation /// 0030010 // establishment of cell polarity // inferred from sequence or structural similarity /// 0030100 // regulation of endocytosis // non-traceable author statement /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 0031589 // cell-substrate adhesion // inferred from direct assay /// 0046328 // regulation of JNK cascade // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from sequence or structural similarity /// 0051965 // positive regulation of synapse assembly // inferred from electronic annotation /// 0051965 // positive regulation of synapse assembly // inferred from sequence or structural similarity /// 0060326 // cell chemotaxis // inferred from direct assay /// 0060326 // cell chemotaxis // inferred from electronic annotation /// 0060996 // dendritic spine development // inferred from electronic annotation /// 0060996 // dendritic spine development // inferred from sequence or structural similarity /// 0060997 // dendritic spine morphogenesis // inferred from electronic annotation /// 0060997 // dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0061351 // neural precursor cell proliferation // inferred from electronic annotation /// 0061351 // neural precursor cell proliferation // inferred from sequence or structural similarity /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from direct assay /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005005 // transmembrane-ephrin receptor activity // inferred from direct assay /// 0005102 // receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008046 // axon guidance receptor activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from direct assay /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay 18.15 171.55 1.01 0.34 0.43 -4.60
218847_at 218847_at NM_006548 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006548.1 /DEF=Homo sapiens IGF-II mRNA-binding protein 2 (IMP-2), mRNA. /FEA=mRNA /GEN=IMP-2 /PROD=IGF-II mRNA-binding protein 2 /DB_XREF=gi:5729883 /UG=Hs.30299 IGF-II mRNA-binding protein 2 /FL=gb:AF057352.1 gb:NM_006548.1 NM_006548 insulin-like growth factor 2 mRNA binding protein 2 IGF2BP2 10644 NM_001007225 /// NM_001291869 /// NM_001291872 /// NM_001291873 /// NM_001291874 /// NM_001291875 /// NM_006548 /// XM_006713477 /// XM_006713478 /// XR_427358 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0042035 // regulation of cytokine biosynthetic process // inferred by curator /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0045182 // translation regulator activity // inferred from sequence or structural similarity /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay 41.63 283.36 1.01 0.34 0.43 -4.60
200047_s_at 200047_s_at NM_003403 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003403.2 /DEF=Homo sapiens YY1 transcription factor (YY1), mRNA. /FEA=mRNA /GEN=YY1 /PROD=YY1 transcription factor /DB_XREF=gi:6042207 /UG=Hs.97496 YY1 transcription factor /FL=gb:M77698.1 gb:M76541.1 gb:NM_003403.2 NM_003403 YY1 transcription factor YY1 7528 NM_003403 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006403 // RNA localization // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010225 // response to UV-C // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034644 // cellular response to UV // inferred from mutant phenotype /// 0034696 // response to prostaglandin F // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0031011 // Ino80 complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from electronic annotation 0000400 // four-way junction DNA binding // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -46.47 535.04 -1.01 0.34 0.43 -4.60
200611_s_at 200611_s_at AB010427 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB010427.2 /DEF=Homo sapiens mRNA for NORI-1, complete cds. /FEA=mRNA /PROD=NORI-1 /DB_XREF=gi:5103672 /UG=Hs.85100 WD repeat domain 1 /FL=gb:BC000201.1 gb:BC002489.1 gb:AF020056.1 gb:AB010427.2 gb:NM_017491.1 AB010427 WD repeat domain 1 WDR1 9948 NM_005112 /// NM_017491 /// XM_006713988 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007605 // sensory perception of sound // traceable author statement /// 0030168 // platelet activation // traceable author statement 0002102 // podosome // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -88.92 1284.09 -1.01 0.34 0.43 -4.60
200726_at 200726_at NM_002710 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002710.1 /DEF=Homo sapiens protein phosphatase 1, catalytic subunit, gamma isoform (PPP1CC), mRNA. /FEA=mRNA /GEN=PPP1CC /PROD=protein phosphatase 1, catalytic subunit, gammaisoform /DB_XREF=gi:4506006 /UG=Hs.79081 protein phosphatase 1, catalytic subunit, gamma isoform /FL=gb:NM_002710.1 NM_002710 protein phosphatase 1, catalytic subunit, gamma isozyme PPP1CC 5501 NM_001244974 /// NM_002710 /// XM_006719469 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0005981 // regulation of glycogen catabolic process // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // traceable author statement /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // inferred from mutant phenotype /// 0043153 // entrainment of circadian clock by photoperiod // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0046822 // regulation of nucleocytoplasmic transport // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0000164 // protein phosphatase type 1 complex // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042587 // glycogen granule // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0043234 // protein complex // inferred from mutant phenotype /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // traceable author statement /// 0004722 // protein serine/threonine phosphatase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from physical interaction /// 0043021 // ribonucleoprotein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 66.53 602.04 1.01 0.34 0.43 -4.60
221816_s_at 221816_s_at BF055474 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF055474 /FEA=EST /DB_XREF=gi:10809370 /DB_XREF=est:7j80f07.x1 /CLONE=IMAGE:3392773 /UG=Hs.279799 putative zinc finger protein NY-REN-34 antigen BF055474 PHD finger protein 11 PHF11 51131 NM_001040443 /// NM_001040444 /// NM_016119 /// XM_005266417 /// XM_006719828 /// XM_006719829 /// XM_006719830 /// XM_006719831 /// XR_245387 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -12.95 75.53 -1.01 0.34 0.43 -4.60
203800_s_at 203800_s_at BG254653 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG254653 /FEA=EST /DB_XREF=gi:12764469 /DB_XREF=est:602368621F1 /CLONE=IMAGE:4476773 /UG=Hs.247324 hypothetical protein LOC63931 /FL=gb:NM_022100.1 BG254653 mitochondrial ribosomal protein S14 MRPS14 63931 NM_022100 /// NR_037606 0006412 // translation // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005761 // mitochondrial ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0003735 // structural constituent of ribosome // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -28.55 243.85 -1.01 0.35 0.43 -4.60
217485_x_at 217485_x_at D38435 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D38435.1 /DEF=Homo sapiens hPMS3 mRNA, partial cds. /FEA=mRNA /GEN=hPMS3 /DB_XREF=gi:600590 /UG=Hs.278466 postmeiotic segregation increased 2-like 1 D38435 postmeiotic segregation increased 2 pseudogene 1 PMS2P1 5379 NM_005394 /// NR_003613 0006298 // mismatch repair // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0032300 // mismatch repair complex // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 13.70 195.70 1.01 0.35 0.43 -4.60
202810_at 202810_at NM_004147 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004147.1 /DEF=Homo sapiens developmentally regulated GTP-binding protein 1 (DRG1), mRNA. /FEA=mRNA /GEN=DRG1 /PROD=developmentally regulated GTP-binding protein 1 /DB_XREF=gi:4758795 /UG=Hs.115242 developmentally regulated GTP-binding protein 1 /FL=gb:AF078103.1 gb:NM_004147.1 NM_004147 developmentally regulated GTP binding protein 1 DRG1 4733 NM_004147 0006351 // transcription, DNA-templated // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0015684 // ferrous iron transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005844 // polysome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // traceable author statement /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 34.05 408.73 1.00 0.35 0.43 -4.60
218080_x_at 218080_x_at NM_007051 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007051.1 /DEF=Homo sapiens Fas (TNFRSF6) associated factor 1 (FAF1), mRNA. /FEA=mRNA /GEN=FAF1 /PROD=Fas (TNFRSF6) associated factor 1 /DB_XREF=gi:5901947 /UG=Hs.25821 Fas (TNFRSF6) associated factor 1 /FL=gb:BC004970.1 gb:AF132938.1 gb:AF106798.1 gb:NM_007051.1 NM_007051 Fas (TNFRSF6) associated factor 1 FAF1 11124 NM_007051 /// NM_131917 0006915 // apoptotic process // inferred from electronic annotation /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from mutant phenotype /// 0008219 // cell death // inferred from mutant phenotype /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0031334 // positive regulation of protein complex assembly // inferred from mutant phenotype /// 0042176 // regulation of protein catabolic process // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // non-traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0045859 // regulation of protein kinase activity // non-traceable author statement /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0031265 // CD95 death-inducing signaling complex // non-traceable author statement /// 0034098 // Cdc48p-Npl4p-Ufd1p AAA ATPase complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019887 // protein kinase regulator activity // non-traceable author statement /// 0019901 // protein kinase binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay /// 0051059 // NF-kappaB binding // inferred from physical interaction 16.45 78.58 1.00 0.35 0.43 -4.60
201978_s_at 201978_s_at NM_014773 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014773.1 /DEF=Homo sapiens KIAA0141 gene product (KIAA0141), mRNA. /FEA=mRNA /GEN=KIAA0141 /PROD=KIAA0141 gene product /DB_XREF=gi:7661939 /UG=Hs.63510 KIAA0141 gene product /FL=gb:D50931.1 gb:NM_014773.1 NM_014773 KIAA0141 KIAA0141 9812 NM_001142603 /// NM_014773 /// XM_005268547 /// XM_005268548 /// XM_005268549 /// XM_005268550 /// XM_005268551 /// XM_005268552 /// XM_006714812 /// XR_245861 /// XR_427782 /// XR_427783 0006915 // apoptotic process // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 16.92 41.19 1.00 0.35 0.43 -4.60
212547_at 212547_at N34842 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N34842 /FEA=EST /DB_XREF=gi:1155984 /DB_XREF=est:yy45d11.s1 /CLONE=IMAGE:276501 /UG=Hs.6580 Homo sapiens cDNA: FLJ23227 fis, clone CAE00645, highly similar to AF052138 Homo sapiens clone 23718 mRNA sequence N34842 bromodomain containing 3 BRD3 8019 NM_007371 /// XM_005272214 /// XM_006717291 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0070577 // lysine-acetylated histone binding // inferred from direct assay -22.37 221.56 -1.00 0.35 0.43 -4.60
55705_at 55705_at W07773 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. W07773:zb03g04.r1 Homo sapiens cDNA, 5 end /clone=IMAGE-301014 /clone_end=5' /gb=W07773 /gi=1281785 /ug=Hs.9739 /len=533 W07773 R3H domain containing 4 R3HDM4 91300 NM_138774 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation -28.00 555.58 -1.00 0.35 0.43 -4.60
208815_x_at 208815_x_at AB023420 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB023420.1 /DEF=Homo sapiens mRNA for heat shock protein apg-2, complete cds. /FEA=mRNA /GEN=apg-2 /PROD=apg-2 /DB_XREF=gi:4579908 /UG=Hs.90093 heat shock 70kD protein 4 /FL=gb:AB023420.1 AB023420 heat shock 70kDa protein 4 HSPA4 3308 NM_002154 /// NM_198431 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0045040 // protein import into mitochondrial outer membrane // inferred from direct assay /// 0051131 // chaperone-mediated protein complex assembly // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // non-traceable author statement 18.62 274.71 1.00 0.35 0.44 -4.60
216194_s_at 216194_s_at AD001527 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AD001527 /DEF=Homo sapiens DNA from chromosome 19-cosmid f24590 containing CAPNS and POL2RI, genomic sequence /FEA=CDS_3 /DB_XREF=gi:1905899 /UG=Hs.31053 cytoskeleton-associated protein 1 AD001527 tubulin folding cofactor B TBCB 1155 NM_001281 /// XM_006722998 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // traceable author statement 0005515 // protein binding // inferred from physical interaction 24.45 300.40 1.00 0.35 0.44 -4.60
201359_at 201359_at NM_016451 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016451.1 /DEF=Homo sapiens coatomer protein complex, subunit beta (COPB), mRNA. /FEA=mRNA /GEN=COPB /PROD=coatomer protein complex, subunit beta /DB_XREF=gi:7705368 /UG=Hs.3059 coatomer protein complex, subunit beta /FL=gb:AF084457.1 gb:AL136593.1 gb:NM_016451.1 NM_016451 coatomer protein complex, subunit beta 1 COPB1 1315 NM_001144061 /// NM_001144062 /// NM_016451 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005798 // Golgi-associated vesicle // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -35.23 689.51 -1.00 0.35 0.44 -4.60
217773_s_at 217773_s_at NM_002489 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002489.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 (9kD, MLRQ) (NDUFA4), mRNA. /FEA=mRNA /GEN=NDUFA4 /PROD=NADH dehydrogenase (ubiquinone) 1 alphasubcomplex, 4 (9kD, MLRQ) /DB_XREF=gi:4505356 /UG=Hs.50098 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 (9kD, MLRQ) /FL=gb:U94586.1 gb:NM_002489.1 gb:AF201077.1 NM_002489 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa NDUFA4 4697 NM_002489 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0005751 // mitochondrial respiratory chain complex IV // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from mutant phenotype /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0032403 // protein complex binding // inferred from direct assay 49.35 602.38 1.00 0.35 0.44 -4.60
202776_at 202776_at NM_014597 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014597.1 /DEF=Homo sapiens acidic 82 kDa protein mRNA (HSU15552), mRNA. /FEA=mRNA /GEN=HSU15552 /PROD=acidic 82 kDa protein mRNA /DB_XREF=gi:7657203 /UG=Hs.85769 acidic 82 kDa protein mRNA /FL=gb:U15552.1 gb:NM_014597.1 NM_014597 deoxynucleotidyltransferase, terminal, interacting protein 2 DNTTIP2 30836 NM_014597 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay 39.63 253.41 1.00 0.35 0.44 -4.60
217720_at 217720_at NM_016139 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016139.1 /DEF=Homo sapiens 16.7Kd protein (LOC51142), mRNA. /FEA=mRNA /GEN=LOC51142 /PROD=16.7Kd protein /DB_XREF=gi:7705850 /UG=Hs.180859 16.7Kd protein /FL=gb:BC003079.1 gb:AF078845.1 gb:NM_016139.1 NM_016139 coiled-coil-helix-coiled-coil-helix domain containing 2 CHCHD2 51142 NM_016139 0005739 // mitochondrion // inferred from direct assay -175.78 1988.79 -0.99 0.35 0.44 -4.60
221819_at 221819_at BF791960 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF791960 /FEA=EST /DB_XREF=gi:12097014 /DB_XREF=est:602252342F1 /CLONE=IMAGE:4344539 /UG=Hs.94308 Homo sapiens cDNA FLJ10447 fis, clone NT2RP1000851 BF791960 RAB35, member RAS oncogene family RAB35 11021 NM_001167606 /// NM_006861 0000910 // cytokinesis // inferred from mutant phenotype /// 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008104 // protein localization // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0019882 // antigen processing and presentation // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0036010 // protein localization to endosome // inferred from mutant phenotype /// 1990090 // cellular response to nerve growth factor stimulus // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005905 // coated pit // inferred from direct assay /// 0010008 // endosome membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031253 // cell projection membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0045171 // intercellular bridge // inferred from direct assay /// 0045334 // clathrin-coated endocytic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay -40.77 243.51 -0.99 0.35 0.44 -4.60
214182_at 214182_at AA243143 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA243143 /FEA=EST /DB_XREF=gi:1874138 /DB_XREF=est:zs13h04.s1 /CLONE=IMAGE:685111 /UG=Hs.89474 ADP-ribosylation factor 6 AA243143 23.62 113.81 0.99 0.35 0.44 -4.60
217256_x_at 217256_x_at Z98950 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z98950 /DEF=Human DNA sequence from PAC 507I15 on chromosome Xq26.3-27.3. Contains 60S ribosomal protein L44 (L41, L36) like gene, ESTs, STSs and a polymorphic CA repeat /FEA=CDS /DB_XREF=gi:3036783 /UG=Hs.248094 Human DNA sequence from PAC 507I15 on chromosome Xq26.3-27.3. Contains 60S ribosomal protein L44 (L41, L36) like gene, ESTs, STSs and a polymorphic CA repeat Z98950 RP3-507I15.1 -48.35 453.45 -0.99 0.35 0.44 -4.60
206621_s_at 206621_s_at NM_022170 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022170.1 /DEF=Homo sapiens Williams-Beuren syndrome chromosome region 1 (WBSCR1), mRNA. /FEA=mRNA /GEN=WBSCR1 /PROD=eukaryotic translation initiation factor 4H /DB_XREF=gi:11559922 /UG=Hs.180900 Williams-Beuren syndrome chromosome region 1 /FL=gb:NM_022170.1 NM_022170 eukaryotic translation initiation factor 4H EIF4H 7458 NM_022170 /// NM_031992 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048589 // developmental growth // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -39.28 848.94 -0.99 0.35 0.44 -4.60
201289_at 201289_at NM_001554 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001554.1 /DEF=Homo sapiens cysteine-rich, angiogenic inducer, 61 (CYR61), mRNA. /FEA=mRNA /GEN=CYR61 /PROD=cysteine-rich, angiogenic inducer, 61 /DB_XREF=gi:4504612 /UG=Hs.8867 cysteine-rich, angiogenic inducer, 61 /FL=gb:BC001271.1 gb:U62015.1 gb:AF003594.1 gb:AF031385.1 gb:NM_001554.1 NM_001554 cysteine-rich, angiogenic inducer, 61 CYR61 3491 NM_001554 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0002041 // intussusceptive angiogenesis // inferred from electronic annotation /// 0003181 // atrioventricular valve morphogenesis // inferred from electronic annotation /// 0003278 // apoptotic process involved in heart morphogenesis // inferred from electronic annotation /// 0003281 // ventricular septum development // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0010518 // positive regulation of phospholipase activity // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030513 // positive regulation of BMP signaling pathway // inferred from genetic interaction /// 0033690 // positive regulation of osteoblast proliferation // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0044319 // wound healing, spreading of cells // inferred from direct assay /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060413 // atrial septum morphogenesis // inferred from electronic annotation /// 0060591 // chondroblast differentiation // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0072593 // reactive oxygen species metabolic process // inferred from electronic annotation /// 2000304 // positive regulation of ceramide biosynthetic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation 173.97 1567.91 0.99 0.35 0.44 -4.60
208728_s_at 208728_s_at BC003682 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003682.1 /DEF=Homo sapiens, cell division cycle 42 (GTP-binding protein, 25kD), clone MGC:5044, mRNA, complete cds. /FEA=mRNA /PROD=cell division cycle 42 (GTP-binding protein,25kD) /DB_XREF=gi:13277547 /UG=Hs.146409 cell division cycle 42 (GTP-binding protein, 25kD) /FL=gb:BC002711.1 gb:BC003682.1 gb:M57298.1 gb:NM_001791.1 BC003682 cell division cycle 42 CDC42 998 NM_001039802 /// NM_001791 /// NM_044472 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0003161 // cardiac conduction system development // inferred from electronic annotation /// 0003334 // keratinocyte development // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from sequence or structural similarity /// 0007088 // regulation of mitosis // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030225 // macrophage differentiation // traceable author statement /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031274 // positive regulation of pseudopodium assembly // inferred from direct assay /// 0031295 // T cell costimulation // traceable author statement /// 0031333 // negative regulation of protein complex assembly // inferred from physical interaction /// 0031424 // keratinization // inferred from electronic annotation /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0032467 // positive regulation of cytokinesis // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0043497 // regulation of protein heterodimerization activity // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0048554 // positive regulation of metalloenzyme activity // inferred from electronic annotation /// 0048664 // neuron fate determination // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051489 // regulation of filopodium assembly // inferred from direct assay /// 0051647 // nucleus localization // inferred from electronic annotation /// 0051683 // establishment of Golgi localization // inferred from sequence or structural similarity /// 0051835 // positive regulation of synapse structural plasticity // inferred from electronic annotation /// 0051988 // regulation of attachment of spindle microtubules to kinetochore // inferred from mutant phenotype /// 0060047 // heart contraction // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from electronic annotation /// 0060661 // submandibular salivary gland formation // inferred from electronic annotation /// 0060684 // epithelial-mesenchymal cell signaling // inferred from electronic annotation /// 0060789 // hair follicle placode formation // inferred from electronic annotation /// 0071338 // positive regulation of hair follicle cell proliferation // inferred from electronic annotation /// 0072384 // organelle transport along microtubule // inferred from sequence or structural similarity /// 0090135 // actin filament branching // inferred from electronic annotation /// 0090136 // epithelial cell-cell adhesion // inferred from electronic annotation /// 0090316 // positive regulation of intracellular protein transport // inferred from electronic annotation /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from direct assay 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030141 // secretory granule // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0051233 // spindle midzone // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from electronic annotation /// 0072686 // mitotic spindle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0034191 // apolipoprotein A-I receptor binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 34.38 240.01 0.99 0.36 0.44 -4.60
214501_s_at 214501_s_at AF044286 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF044286.1 /DEF=Homo sapiens histone macroH2A1.1 mRNA, complete cds. /FEA=CDS /PROD=histone macroH2A1.1 /DB_XREF=gi:3493530 /UG=Hs.75258 H2A histone family, member Y /FL=gb:AF044286.1 AF044286 H2A histone family, member Y H2AFY 9555 NM_001040158 /// NM_004893 /// NM_138609 /// NM_138610 /// XM_005272132 /// XM_005272134 /// XM_005272135 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001558 // regulation of cell growth // inferred from genetic interaction /// 0006334 // nucleosome assembly // non-traceable author statement /// 0007549 // dosage compensation // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0033128 // negative regulation of histone phosphorylation // inferred from mutant phenotype /// 0045814 // negative regulation of gene expression, epigenetic // inferred from mutant phenotype /// 0061187 // regulation of chromatin silencing at rDNA // inferred from mutant phenotype /// 0071169 // establishment of protein localization to chromatin // inferred from mutant phenotype /// 0071901 // negative regulation of protein serine/threonine kinase activity // inferred from mutant phenotype /// 1901837 // negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter // inferred from genetic interaction /// 1901837 // negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter // inferred from mutant phenotype /// 1902750 // negative regulation of cell cycle G2/M phase transition // inferred from mutant phenotype 0000786 // nucleosome // non-traceable author statement /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0001739 // sex chromatin // traceable author statement /// 0001740 // Barr body // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0035098 // ESC/E(Z) complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000182 // rDNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0010385 // double-stranded methylated DNA binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030291 // protein serine/threonine kinase inhibitor activity // inferred from mutant phenotype /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -19.18 254.49 -0.98 0.36 0.44 -4.60
214247_s_at 214247_s_at AU148057 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU148057 /FEA=EST /DB_XREF=gi:11009578 /DB_XREF=est:AU148057 /CLONE=MAMMA1002489 /UG=Hs.278503 regulated in glioma AU148057 dickkopf WNT signaling pathway inhibitor 3 DKK3 27122 NM_001018057 /// NM_013253 /// NM_015881 /// XM_006718177 /// XM_006718178 /// XM_006718179 /// XM_006718180 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from expression pattern /// 0032348 // negative regulation of aldosterone biosynthetic process // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from direct assay /// 2000065 // negative regulation of cortisol biosynthetic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement 37.95 523.25 0.98 0.36 0.44 -4.60
209247_s_at 209247_s_at BC001661 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001661.1 /DEF=Homo sapiens, ATP-binding cassette, sub-family F (GCN20), member 2, clone MGC:1425, mRNA, complete cds. /FEA=mRNA /PROD=ATP-binding cassette, sub-family F (GCN20),member 2 /DB_XREF=gi:12804500 /UG=Hs.153612 ATP-binding cassette, sub-family F (GCN20), member 2 /FL=gb:AF261091.1 gb:AF261092.1 gb:BC001661.1 gb:AF091073.1 BC001661 ATP-binding cassette, sub-family F (GCN20), member 2 ABCF2 10061 NM_005692 /// NM_007189 /// XM_005249931 /// XM_006715824 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0043190 // ATP-binding cassette (ABC) transporter complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 14.97 201.66 0.98 0.36 0.44 -4.60
218051_s_at 218051_s_at NM_022908 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022908.1 /DEF=Homo sapiens hypothetical protein FLJ12442 (FLJ12442), mRNA. /FEA=mRNA /GEN=FLJ12442 /PROD=hypothetical protein FLJ12442 /DB_XREF=gi:12597652 /UG=Hs.84753 hypothetical protein FLJ12442 /FL=gb:NM_022908.1 NM_022908 5'-nucleotidase domain containing 2 NT5DC2 64943 NM_001134231 /// NM_022908 /// XM_005265406 /// XM_006713303 /// XM_006713304 /// XM_006713305 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 28.00 347.30 0.98 0.36 0.44 -4.60
221923_s_at 221923_s_at AA191576 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA191576 /FEA=EST /DB_XREF=gi:1780275 /DB_XREF=est:zp81c10.s1 /CLONE=IMAGE:626610 /UG=Hs.9614 nucleophosmin (nucleolar phosphoprotein B23, numatrin) AA191576 nucleophosmin (nucleolar phosphoprotein B23, numatrin) NPM1 4869 NM_001037738 /// NM_002520 /// NM_199185 /// XM_005265920 /// XM_006714869 0006281 // DNA repair // inferred from direct assay /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // traceable author statement /// 0006886 // intracellular protein transport // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // traceable author statement /// 0006950 // response to stress // inferred from mutant phenotype /// 0007098 // centrosome cycle // inferred from mutant phenotype /// 0007098 // centrosome cycle // inferred from sequence or structural similarity /// 0007165 // signal transduction // non-traceable author statement /// 0007569 // cell aging // inferred from mutant phenotype /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0010826 // negative regulation of centrosome duplication // inferred from mutant phenotype /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032071 // regulation of endodeoxyribonuclease activity // inferred from direct assay /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0042255 // ribosome assembly // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // non-traceable author statement /// 0044387 // negative regulation of protein kinase activity by regulation of protein phosphorylation // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay /// 0046599 // regulation of centriole replication // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0060699 // regulation of endoribonuclease activity // inferred from direct assay /// 0060735 // regulation of eIF2 alpha phosphorylation by dsRNA // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031616 // spindle pole centrosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0004860 // protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030957 // Tat protein binding // inferred from direct assay /// 0042393 // histone binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043023 // ribosomal large subunit binding // inferred from direct assay /// 0043024 // ribosomal small subunit binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0051059 // NF-kappaB binding // inferred from direct assay /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity -77.83 1060.44 -0.98 0.36 0.44 -4.60
217898_at 217898_at NM_020154 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020154.1 /DEF=Homo sapiens chromosome 11 hypothetical protein ORF3 (LOC56851), mRNA. /FEA=mRNA /GEN=LOC56851 /PROD=chromosome 11 hypothetical protein ORF3 /DB_XREF=gi:9910345 /UG=Hs.4245 chromosome 11 hypothetical protein ORF3 /FL=gb:AF242729.1 gb:NM_020154.1 NM_020154 ER membrane protein complex subunit 7 EMC7 56851 NM_020154 0005737 // cytoplasm // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0016021 // integral component of membrane // non-traceable author statement /// 0072546 // ER membrane protein complex // inferred from direct assay 0017076 // purine nucleotide binding // non-traceable author statement /// 0030246 // carbohydrate binding // inferred from electronic annotation 28.00 269.45 0.98 0.36 0.44 -4.60
218190_s_at 218190_s_at NM_013387 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013387.1 /DEF=Homo sapiens ubiquinol-cytochrome c reductase complex (7.2 kD) (HSPC051), mRNA. /FEA=mRNA /GEN=HSPC051 /PROD=ubiquinol-cytochrome c reductase complex (7.2kD) /DB_XREF=gi:9994180 /UG=Hs.284292 ubiquinol-cytochrome c reductase complex (7.2 kD) /FL=gb:AB028598.1 gb:BC005402.1 gb:AF112217.1 gb:AF161536.1 gb:AF161468.1 gb:NM_013387.1 NM_013387 ubiquinol-cytochrome c reductase, complex III subunit X UQCR10 29796 NM_001003684 /// NM_013387 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // non-traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005750 // mitochondrial respiratory chain complex III // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0008121 // ubiquinol-cytochrome-c reductase activity // non-traceable author statement 90.05 869.92 0.98 0.36 0.44 -4.60
203562_at 203562_at NM_005103 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005103.2 /DEF=Homo sapiens fasciculation and elongation protein zeta 1 (zygin I) (FEZ1), transcript variant 1, mRNA. /FEA=mRNA /GEN=FEZ1 /PROD=zygin 1, isoform 1 /DB_XREF=gi:12025681 /UG=Hs.79226 fasciculation and elongation protein zeta 1 (zygin I) /FL=gb:NM_005103.2 gb:U69139.1 gb:U60060.1 NM_005103 fasciculation and elongation protein zeta 1 (zygin I) FEZ1 9638 NM_005103 /// NM_022549 /// XM_005271734 /// XM_005271735 0006810 // transport // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0051654 // establishment of mitochondrion localization // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation -18.65 311.52 -0.98 0.36 0.44 -4.60
219024_at 219024_at NM_021622 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021622.1 /DEF=Homo sapiens pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 1 (PLEKHA1), mRNA. /FEA=mRNA /GEN=PLEKHA1 /PROD=pleckstrin homology domain-containing, family A(phosphoinositide binding specific) member 1 /DB_XREF=gi:11055985 /UG=Hs.17757 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 1 /FL=gb:AF286160.1 gb:NM_021622.1 gb:BC001136.1 NM_021622 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 PLEKHA1 59338 NM_001001974 /// NM_001195608 /// NM_021622 /// XM_005270016 /// XM_005270017 /// XM_005270018 /// XM_005270019 /// XM_005270020 /// XM_005270021 /// XM_006717935 0001553 // luteinization // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0031529 // ruffle organization // inferred from direct assay /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0045184 // establishment of protein localization // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // inferred from direct assay /// 0051898 // negative regulation of protein kinase B signaling // inferred from mutant phenotype /// 0060021 // palate development // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from direct assay 22.83 163.39 0.98 0.36 0.44 -4.60
58900_at 58900_at AW025284 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AW025284:wu95h10.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-990806 /clone_end=3' /gb=AW025284 /gi=5878814 /ug=Hs.237946 /len=454 AW025284 ubiquitin-conjugating enzyme E2D 4 (putative) UBE2D4 51619 NM_015983 /// XM_005249772 /// XM_006715734 /// XM_006715735 /// XM_006715736 /// XM_006715737 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035519 // protein K29-linked ubiquitination // inferred from direct assay /// 0044314 // protein K27-linked ubiquitination // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0085020 // protein K6-linked ubiquitination // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 24.52 298.39 0.98 0.36 0.44 -4.60
201994_at 201994_at NM_012286 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012286.1 /DEF=Homo sapiens MORF-related gene X (KIAA0026), mRNA. /FEA=mRNA /GEN=KIAA0026 /PROD=MORF-related gene X /DB_XREF=gi:6912447 /UG=Hs.173714 MORF-related gene X /FL=gb:D14812.1 gb:AF100620.1 gb:NM_012286.1 gb:AF167174.1 NM_012286 mortality factor 4 like 2 MORF4L2 9643 NM_001142418 /// NM_001142419 /// NM_001142420 /// NM_001142421 /// NM_001142422 /// NM_001142423 /// NM_001142424 /// NM_001142425 /// NM_001142426 /// NM_001142427 /// NM_001142428 /// NM_001142429 /// NM_001142430 /// NM_001142431 /// NM_001142432 /// NM_012286 0001558 // regulation of cell growth // non-traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051155 // positive regulation of striated muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 86.38 1759.94 0.98 0.36 0.44 -4.60
213291_s_at 213291_s_at AA160522 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA160522 /FEA=EST /DB_XREF=gi:1735889 /DB_XREF=est:zq46b10.s1 /CLONE=IMAGE:632731 /UG=Hs.301667 Homo sapiens mRNA; cDNA DKFZp566I043 (from clone DKFZp566I043) AA160522 ubiquitin protein ligase E3A UBE3A 7337 NM_000462 /// NM_130838 /// NM_130839 /// XM_005268267 /// XM_005268268 /// XM_005268269 /// XM_005268270 /// XM_005268271 /// XM_006720673 /// XM_006720674 /// XM_006720675 /// XM_006720676 0001541 // ovarian follicle development // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007420 // brain development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // not recorded /// 0035037 // sperm entry // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation -19.47 199.51 -0.98 0.36 0.44 -4.60
200971_s_at 200971_s_at NM_014445 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014445.1 /DEF=Homo sapiens stress-associated endoplasmic reticulum protein 1; ribosome associated membrane protein 4 (SERP1), mRNA. /FEA=mRNA /GEN=SERP1 /PROD=stress-associated endoplasmic reticulum protein1; ribosome associated membrane protein 4 /DB_XREF=gi:7657551 /UG=Hs.76698 stress-associated endoplasmic reticulum protein 1; ribosome associated membrane protein 4 /FL=gb:AL136807.1 gb:AF136975.1 gb:AB022427.1 gb:NM_014445.1 NM_014445 uncharacterized LOC101928061 /// stress-associated endoplasmic reticulum protein 1 LOC101928061 /// SERP1 27230 /// 101928061 NM_014445 /// XR_241595 /// XR_249518 /// XR_251476 0001501 // skeletal system development // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007009 // plasma membrane organization // traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 62.47 805.76 0.98 0.36 0.44 -4.60
213101_s_at 213101_s_at Z78330 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z78330 /FEA=EST /DB_XREF=gi:1495103 /DB_XREF=est:HSZ78330 /CLONE=2.49 (CEPH) /UG=Hs.10927 hypothetical protein EUROIMAGE1875335 Z78330 ARP3 actin-related protein 3 homolog (yeast) ACTR3 10096 NM_001277140 /// NM_005721 /// NR_102318 0006928 // cellular component movement // traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0008356 // asymmetric cell division // inferred from electronic annotation /// 0009743 // response to carbohydrate // inferred from electronic annotation /// 0010592 // positive regulation of lamellipodium assembly // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0033206 // meiotic cytokinesis // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043519 // regulation of myosin II filament organization // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from electronic annotation /// 0051321 // meiotic cell cycle // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051653 // spindle localization // inferred from electronic annotation /// 0060271 // cilium morphogenesis // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation -91.55 2324.95 -0.97 0.36 0.45 -4.60
212028_at 212028_at BE466128 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE466128 /FEA=EST /DB_XREF=gi:9511903 /DB_XREF=est:hy10f03.x1 /CLONE=IMAGE:3196925 /UG=Hs.180789 S164 protein BE466128 RNA binding motif protein 25 RBM25 58517 NM_021239 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from direct assay /// 0097194 // execution phase of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -17.68 127.71 -0.97 0.36 0.45 -4.60
203006_at 203006_at NM_005539 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005539.1 /DEF=Homo sapiens inositol polyphosphate-5-phosphatase, 40kD (INPP5A), mRNA. /FEA=mRNA /GEN=INPP5A /PROD=inositol polyphosphate-5-phosphatase, 40kD /DB_XREF=gi:5031796 /UG=Hs.124029 inositol polyphosphate-5-phosphatase, 40kD /FL=gb:NM_005539.1 NM_005539 inositol polyphosphate-5-phosphatase, 40kDa INPP5A 3632 NM_005539 0007154 // cell communication // non-traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046856 // phosphatidylinositol dephosphorylation // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004445 // inositol-polyphosphate 5-phosphatase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042731 // PH domain binding // inferred from physical interaction /// 0052658 // inositol-1,4,5-trisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0052659 // inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity // inferred from electronic annotation 27.07 236.76 0.97 0.36 0.45 -4.60
212897_at 212897_at AI738802 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI738802 /FEA=EST /DB_XREF=gi:5100783 /DB_XREF=est:wi36g07.x1 /CLONE=IMAGE:2392380 /UG=Hs.129836 KIAA1028 protein AI738802 cyclin-dependent kinase 19 CDK19 23097 NM_015076 /// XM_005266870 /// XM_005266871 /// XM_005266872 /// XM_005266873 /// XM_006715402 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -15.50 43.92 -0.97 0.36 0.45 -4.60
201151_s_at 201151_s_at BF512200 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF512200 /FEA=EST /DB_XREF=gi:11597379 /DB_XREF=est:UI-H-BI3-alq-d-11-0-UI.s1 /CLONE=IMAGE:3068228 /UG=Hs.28578 muscleblind (Drosophila)-like /FL=gb:NM_021038.1 gb:AB007888.1 BF512200 muscleblind-like splicing regulator 1 MBNL1 4154 NM_021038 /// NM_207292 /// NM_207293 /// NM_207294 /// NM_207295 /// NM_207296 /// NM_207297 /// XM_005247457 /// XM_005247458 /// XM_005247459 /// XM_005247460 /// XM_005247461 /// XM_005247462 /// XM_005247463 /// XM_005247464 /// XM_005247465 /// XM_005247466 /// XM_005247467 /// XM_005247468 /// XM_005247469 /// XM_005247470 /// XM_005247471 /// XM_005247472 /// XM_005247473 /// XM_005247474 /// XM_005247475 /// XM_005247476 /// XM_005247477 /// XM_006713639 /// XM_006713640 /// XM_006713641 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from direct assay /// 0030326 // embryonic limb morphogenesis // inferred from sequence or structural similarity /// 0043484 // regulation of RNA splicing // inferred from direct assay /// 0045445 // myoblast differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0010494 // cytoplasmic stress granule // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 40.85 252.80 0.97 0.36 0.45 -4.60
202313_at 202313_at NM_002717 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002717.1 /DEF=Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform (PPP2R2A), mRNA. /FEA=mRNA /GEN=PPP2R2A /PROD=protein phosphatase 2 (formerly 2A), regulatorysubunit B (PR 52), alpha isoform /DB_XREF=gi:4506018 /UG=Hs.179574 protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform /FL=gb:M64929.1 gb:NM_002717.1 NM_002717 protein phosphatase 2, regulatory subunit B, alpha PPP2R2A 5520 NM_001177591 /// NM_002717 /// XM_005273559 /// XM_005273560 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0043278 // response to morphine // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // traceable author statement 0000159 // protein phosphatase type 2A complex // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement -24.10 489.02 -0.97 0.36 0.45 -4.60
209071_s_at 209071_s_at AF159570 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF159570.1 /DEF=Homo sapiens regulator of G-protein signalling 5 (RGS5) mRNA, complete cds. /FEA=mRNA /GEN=RGS5 /PROD=regulator of G-protein signalling 5 /DB_XREF=gi:5230675 /UG=Hs.24950 regulator of G-protein signalling 5 /FL=gb:AB008109.1 gb:NM_003617.1 gb:AF159570.1 AF159570 regulator of G-protein signaling 5 RGS5 8490 NM_001195303 /// NM_001254748 /// NM_001254749 /// NM_003617 /// NM_025226 /// NR_045630 0007165 // signal transduction // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // not recorded /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // not recorded 109.67 1800.94 0.97 0.36 0.45 -4.60
221728_x_at 221728_x_at AA628440 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA628440 /FEA=EST /DB_XREF=gi:2540827 /DB_XREF=est:af26f02.s1 /CLONE=IMAGE:1032795 /UG=Hs.83623 nuclear receptor subfamily 1, group I, member 3 AA628440 X inactive specific transcript (non-protein coding) XIST 7503 NR_001564 69.22 298.11 0.97 0.36 0.45 -4.60
209503_s_at 209503_s_at AF035309 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF035309.1 /DEF=Homo sapiens clone 23598 mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:2661070 /UG=Hs.79387 proteasome (prosome, macropain) 26S subunit, ATPase, 5 /FL=gb:AF035309.1 AF035309 proteasome (prosome, macropain) 26S subunit, ATPase, 5 PSMC5 5705 NM_001199163 /// NM_002805 /// XM_006721980 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043069 // negative regulation of programmed cell death // non-traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0090261 // positive regulation of inclusion body assembly // inferred from electronic annotation 0000502 // proteasome complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016234 // inclusion body // inferred from electronic annotation /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0031595 // nuclear proteasome complex // inferred from electronic annotation /// 0031597 // cytosolic proteasome complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // traceable author statement /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0016887 // ATPase activity // traceable author statement /// 0017025 // TBP-class protein binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0031531 // thyrotropin-releasing hormone receptor binding // inferred from physical interaction 40.68 313.66 0.97 0.36 0.45 -4.60
221676_s_at 221676_s_at BC002342 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002342.1 /DEF=Homo sapiens, coronin, actin-binding protein, 1C, clone MGC:8518, mRNA, complete cds. /FEA=mRNA /PROD=coronin, actin-binding protein, 1C /DB_XREF=gi:12803080 /UG=Hs.17377 coronin, actin-binding protein, 1C /FL=gb:BC002342.1 BC002342 coronin, actin binding protein, 1C CORO1C 23603 NM_001105237 /// NM_001276471 /// NM_014325 0006909 // phagocytosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0030036 // actin cytoskeleton organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded -33.62 543.69 -0.97 0.36 0.45 -4.60
213151_s_at 213151_s_at AU157515 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU157515 /FEA=EST /DB_XREF=gi:11019036 /DB_XREF=est:AU157515 /CLONE=PLACE1008067 /UG=Hs.184326 CDC10 (cell division cycle 10, S. cerevisiae, homolog) AU157515 septin 7 SEPT7 989 NM_001011553 /// NM_001242956 /// NM_001788 /// XM_006715806 /// XM_006715807 /// XM_006715808 /// XM_006715809 /// XM_006715810 0000910 // cytokinesis // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0016476 // regulation of embryonic cell shape // inferred from sequence or structural similarity /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0060271 // cilium morphogenesis // inferred from sequence or structural similarity 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0001725 // stress fiber // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005929 // cilium // inferred from electronic annotation /// 0005930 // axoneme // inferred from sequence or structural similarity /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0030496 // midbody // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 47.57 799.91 0.97 0.36 0.45 -4.60
211759_x_at 211759_x_at BC005969 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005969.1 /DEF=Homo sapiens, clone MGC:14625, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:14625) /DB_XREF=gi:13543641 /FL=gb:BC005969.1 BC005969 tubulin folding cofactor B TBCB 1155 NM_001281 /// XM_006722998 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // traceable author statement 0005515 // protein binding // inferred from physical interaction -43.15 530.15 -0.96 0.37 0.45 -4.60
200946_x_at 200946_x_at AI339331 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI339331 /FEA=EST /DB_XREF=gi:4076258 /DB_XREF=est:qt01g12.x1 /CLONE=IMAGE:1946374 /UG=Hs.77508 glutamate dehydrogenase 1 /FL=gb:J03248.1 gb:M37154.1 gb:M20867.1 gb:NM_005271.1 AI339331 glutamate dehydrogenase 1 GLUD1 2746 NM_005271 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // inferred from direct assay /// 0006538 // glutamate catabolic process // inferred from direct assay /// 0006541 // glutamine metabolic process // inferred from sequence or structural similarity /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0072350 // tricarboxylic acid metabolic process // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004352 // glutamate dehydrogenase (NAD+) activity // inferred from direct assay /// 0004353 // glutamate dehydrogenase [NAD(P)+] activity // not recorded /// 0004353 // glutamate dehydrogenase [NAD(P)+] activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016639 // oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // traceable author statement /// 0043531 // ADP binding // inferred from direct assay /// 0070403 // NAD+ binding // inferred from direct assay /// 0070728 // leucine binding // inferred from direct assay -22.40 242.03 -0.96 0.37 0.45 -4.60
212842_x_at 212842_x_at AL043571 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL043571 /FEA=EST /DB_XREF=gi:5422958 /DB_XREF=est:DKFZp434F1527_s1 /CLONE=DKFZp434F1527 /UG=Hs.179825 RAN binding protein 2-like 1 AL043571 RANBP2-like and GRIP domain containing 3 /// RANBP2-like and GRIP domain containing 4 /// RANBP2-like and GRIP domain containing 5 /// RANBP2-like and GRIP domain containing 6 /// RANBP2-like and GRIP domain containing 8 RGPD3 /// RGPD4 /// RGPD5 /// RGPD6 /// RGPD8 84220 /// 285190 /// 653489 /// 727851 /// 729540 NM_001037866 /// NM_001123363 /// NM_001144013 /// NM_001164463 /// NM_005054 /// NM_032260 /// NM_182588 /// XM_005263747 /// XM_005263748 /// XM_005263753 /// XM_005263755 /// XM_005263756 /// XM_005263819 /// XM_005263820 /// XM_005263821 /// XM_005263822 /// XM_006712454 /// XM_006712708 /// XM_006712794 0000042 // protein targeting to Golgi // inferred from electronic annotation /// 0033132 // negative regulation of glucokinase activity // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0090526 // regulation of gluconeogenesis involved in cellular glucose homeostasis // inferred from electronic annotation 0005643 // nuclear pore // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // non-traceable author statement -53.62 305.89 -0.96 0.37 0.45 -4.60
213710_s_at 213710_s_at AL523275 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523275 /FEA=EST /DB_XREF=gi:12786768 /DB_XREF=est:AL523275 /CLONE=CS0DC001YL12 (5 prime) /UG=Hs.279009 matrix Gla protein AL523275 calmodulin 1 (phosphorylase kinase, delta) CALM1 801 NM_001166106 /// NM_006888 /// XM_006720258 33.80 139.40 0.96 0.37 0.45 -4.60
200798_x_at 200798_x_at NM_021960 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021960.1 /DEF=Homo sapiens myeloid cell leukemia sequence 1 (BCL2-related) (MCL1), mRNA. /FEA=mRNA /GEN=MCL1 /PROD=myeloid cell leukemia sequence 1 (BCL2-related) /DB_XREF=gi:11386164 /UG=Hs.86386 myeloid cell leukemia sequence 1 (BCL2-related) /FL=gb:NM_021960.1 gb:AF118124.1 NM_021960 myeloid cell leukemia 1 MCL1 4170 NM_001197320 /// NM_021960 /// NM_182763 0001709 // cell fate determination // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0019725 // cellular homeostasis // non-traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0071806 // protein transmembrane transport // traceable author statement /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype /// 0097194 // execution phase of apoptosis // inferred from direct assay /// 1900118 // negative regulation of execution phase of apoptosis // traceable author statement /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype /// 2001020 // regulation of response to DNA damage stimulus // inferred from mutant phenotype /// 2001240 // negative regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0097136 // Bcl-2 family protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015266 // protein channel activity // traceable author statement /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051434 // BH3 domain binding // inferred from physical interaction 39.95 477.80 0.96 0.37 0.45 -4.60
218529_at 218529_at NM_016579 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016579.1 /DEF=Homo sapiens 8D6 antigen (LOC51293), mRNA. /FEA=mRNA /GEN=LOC51293 /PROD=8D6 antigen /DB_XREF=gi:7706110 /UG=Hs.106196 8D6 antigen /FL=gb:AL136652.1 gb:BC000668.1 gb:AF161254.1 gb:NM_016579.1 NM_016579 CD320 molecule CD320 51293 NM_001165895 /// NM_016579 0001558 // regulation of cell growth // non-traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0009235 // cobalamin metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0031419 // cobalamin binding // inferred from direct assay -16.88 87.61 -0.96 0.37 0.45 -4.60
203218_at 203218_at W37431 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W37431 /FEA=EST /DB_XREF=gi:1319025 /DB_XREF=est:zc11f11.s1 /CLONE=IMAGE:322029 /UG=Hs.246857 mitogen-activated protein kinase 9 /FL=gb:U34821.1 gb:NM_002752.1 gb:L31951.1 gb:U09759.1 W37431 mitogen-activated protein kinase 9 MAPK9 5601 NM_001135044 /// NM_002752 /// NM_139068 /// NM_139069 /// NM_139070 /// XM_005265940 /// XM_006714891 0000165 // MAPK cascade // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0007254 // JNK cascade // inferred from direct assay /// 0007254 // JNK cascade // traceable author statement /// 0007258 // JUN phosphorylation // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from mutant phenotype /// 0010770 // positive regulation of cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0014075 // response to amine // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031394 // positive regulation of prostaglandin biosynthetic process // inferred from electronic annotation /// 0031396 // regulation of protein ubiquitination // inferred from electronic annotation /// 0032308 // positive regulation of prostaglandin secretion // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0034644 // cellular response to UV // inferred from electronic annotation /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071347 // cellular response to interleukin-1 // inferred from electronic annotation /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 2001235 // positive regulation of apoptotic signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004705 // JUN kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0008656 // cysteine-type endopeptidase activator activity involved in apoptotic process // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation -21.87 157.64 -0.96 0.37 0.45 -4.60
209045_at 209045_at AF195530 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF195530.1 /DEF=Homo sapiens soluble aminopeptidase P (XPNPEP1) mRNA, complete cds. /FEA=mRNA /GEN=XPNPEP1 /PROD=soluble aminopeptidase P /DB_XREF=gi:9739016 /UG=Hs.56542 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble /FL=gb:BC005126.1 gb:AF272981.1 gb:AF195530.1 AF195530 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble XPNPEP1 7511 NM_001167604 /// NM_020383 /// NR_030724 /// XM_005270144 /// XM_005270145 /// XM_006717962 /// XM_006717963 0006508 // proteolysis // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0010815 // bradykinin catabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070006 // metalloaminopeptidase activity // inferred from direct assay -35.62 293.31 -0.96 0.37 0.45 -4.60
212953_x_at 212953_x_at BE251303 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE251303 /FEA=EST /DB_XREF=gi:9121413 /DB_XREF=est:601107814F1 /CLONE=IMAGE:3344018 /UG=Hs.16488 calreticulin BE251303 calreticulin CALR 811 NM_004343 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002502 // peptide antigen assembly with MHC class I protein complex // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006611 // protein export from nucleus // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007050 // cell cycle arrest // inferred from genetic interaction /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0017148 // negative regulation of translation // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0022417 // protein maturation by protein folding // traceable author statement /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033144 // negative regulation of intracellular steroid hormone receptor signaling pathway // inferred from direct assay /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034504 // protein localization to nucleus // inferred from direct assay /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042921 // glucocorticoid receptor signaling pathway // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from genetic interaction /// 0045787 // positive regulation of cell cycle // inferred from genetic interaction /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050821 // protein stabilization // traceable author statement /// 0051208 // sequestering of calcium ion // traceable author statement /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // inferred from electronic annotation /// 0071285 // cellular response to lithium ion // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0090398 // cellular senescence // inferred from genetic interaction /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from mutant phenotype /// 2000510 // positive regulation of dendritic cell chemotaxis // inferred from mutant phenotype 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005844 // polysome // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation /// 0042824 // MHC class I peptide loading complex // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement /// 0071682 // endocytic vesicle lumen // traceable author statement 0001849 // complement component C1q binding // traceable author statement /// 0001948 // glycoprotein binding // inferred from physical interaction /// 0003677 // DNA binding // non-traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0030246 // carbohydrate binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation /// 0042562 // hormone binding // inferred from electronic annotation /// 0044183 // protein binding involved in protein folding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement /// 0051087 // chaperone binding // traceable author statement 219.00 847.12 0.96 0.37 0.45 -4.60
201753_s_at 201753_s_at NM_019903 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019903.1 /DEF=Homo sapiens adducin 3 (gamma) (ADD3), transcript variant 2, mRNA. /FEA=mRNA /GEN=ADD3 /PROD=adducin 3, isoform b /DB_XREF=gi:9951926 /UG=Hs.324470 adducin 3 (gamma) /FL=gb:D67031.1 gb:NM_019903.1 NM_019903 adducin 3 (gamma) ADD3 120 NM_001121 /// NM_016824 /// NM_019903 /// XM_005269529 /// XM_005269530 /// XM_005269531 /// XM_005269533 /// XM_005269534 /// XM_005269535 /// XM_006717626 /// XM_006717627 /// XM_006717628 /// XM_006717629 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // traceable author statement 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005516 // calmodulin binding // inferred from electronic annotation -31.23 197.41 -0.96 0.37 0.45 -4.60
202836_s_at 202836_s_at NM_006701 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006701.1 /DEF=Homo sapiens similar to S. pombe dim1+ (DIM1), mRNA. /FEA=mRNA /GEN=DIM1 /PROD=similar to S. pombe dim1+ /DB_XREF=gi:5729801 /UG=Hs.5074 similar to S. pombe dim1+ /FL=gb:BC001046.1 gb:AF023611.1 gb:NM_006701.1 gb:AF146373.1 NM_006701 thioredoxin-like 4A TXNL4A 10907 NM_006701 /// XM_005266645 0000245 // spliceosomal complex assembly // traceable author statement /// 0000375 // RNA splicing, via transesterification reactions // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -37.25 494.98 -0.96 0.37 0.45 -4.60
200837_at 200837_at NM_005745 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005745.3 /DEF=Homo sapiens accessory proteins BAP31BAP29 (DXS1357E), mRNA. /FEA=mRNA /GEN=DXS1357E /PROD=accessory proteins BAP31BAP29 /DB_XREF=gi:10047078 /UG=Hs.291904 accessory proteins BAP31BAP29 /FL=gb:NM_005745.3 NM_005745 B-cell receptor-associated protein 31 BCAP31 10134 NM_001139441 /// NM_001139457 /// NM_001256447 /// NM_005745 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032471 // negative regulation of endoplasmic reticulum calcium ion concentration // inferred from mutant phenotype /// 0035584 // calcium-mediated signaling using intracellular calcium source // inferred from mutant phenotype /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0051561 // positive regulation of mitochondrial calcium ion concentration // inferred from mutant phenotype /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005102 // receptor binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction 59.73 390.51 0.96 0.37 0.45 -4.60
217749_at 217749_at NM_016128 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016128.1 /DEF=Homo sapiens coat protein gamma-cop (LOC51137), mRNA. /FEA=mRNA /GEN=LOC51137 /PROD=coat protein gamma-cop /DB_XREF=gi:11559928 /UG=Hs.102950 coat protein gamma-cop /FL=gb:AB047846.1 gb:NM_016128.1 gb:AF100756.1 NM_016128 coatomer protein complex, subunit gamma 1 COPG1 22820 NM_016128 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0051683 // establishment of Golgi localization // inferred from sequence or structural similarity /// 0061024 // membrane organization // traceable author statement /// 0072384 // organelle transport along microtubule // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 20.28 112.69 0.95 0.37 0.45 -4.60
202753_at 202753_at NM_014814 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014814.1 /DEF=Homo sapiens KIAA0107 gene product (KIAA0107), mRNA. /FEA=mRNA /GEN=KIAA0107 /PROD=KIAA0107 gene product /DB_XREF=gi:7661913 /UG=Hs.23488 KIAA0107 gene product /FL=gb:BC000630.1 gb:BC000904.2 gb:D14663.1 gb:AF215935.1 gb:NM_014814.1 NM_014814 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 PSMD6 9861 NM_001271779 /// NM_001271780 /// NM_001271781 /// NM_014814 /// XM_005265618 /// XM_005265619 /// XM_006713431 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006200 // ATP catabolic process // non-traceable author statement /// 0006508 // proteolysis // non-traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0016887 // ATPase activity // non-traceable author statement 59.57 749.26 0.95 0.37 0.45 -4.60
200718_s_at 200718_s_at AA927664 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA927664 /FEA=EST /DB_XREF=gi:3076484 /DB_XREF=est:om71h10.s1 /CLONE=IMAGE:1552675 /UG=Hs.171626 transcription elongation factor B (SIII), polypeptide 1-like /FL=gb:NM_003197.2 AA927664 S-phase kinase-associated protein 1 SKP1 6500 NM_006930 /// NM_170679 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0035518 // histone H2A monoubiquitination // inferred from direct assay /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay /// 0031467 // Cul7-RING ubiquitin ligase complex // inferred from direct assay /// 0031519 // PcG protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 124.03 1835.61 0.95 0.37 0.45 -4.60
200645_at 200645_at NM_007278 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007278.1 /DEF=Homo sapiens GABA(A) receptor-associated protein (GABARAP), mRNA. /FEA=mRNA /GEN=GABARAP /PROD=GABA(A) receptor-associated protein /DB_XREF=gi:6005763 /UG=Hs.7719 GABA(A) receptor-associated protein /FL=gb:AB030711.1 gb:AF044671.1 gb:AF067171.1 gb:AF161586.1 gb:NM_007278.1 gb:AF183425.1 NM_007278 GABA(A) receptor-associated protein GABARAP 11337 NM_007278 0000045 // autophagic vacuole assembly // not recorded /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0000422 // mitochondrion degradation // not recorded /// 0006605 // protein targeting // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0032258 // CVT pathway // not recorded /// 0034727 // piecemeal microautophagy of nucleus // not recorded /// 0044805 // late nucleophagy // not recorded /// 0071211 // protein targeting to vacuole involved in autophagy // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000407 // pre-autophagosomal structure // not recorded /// 0000421 // autophagic vacuole membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005790 // smooth endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005930 // axoneme // inferred from sequence or structural similarity /// 0012505 // endomembrane system // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // not recorded /// 0008429 // phosphatidylethanolamine binding // not recorded /// 0048487 // beta-tubulin binding // inferred from direct assay /// 0050811 // GABA receptor binding // inferred from physical interaction 66.80 1137.47 0.95 0.37 0.45 -4.60
201296_s_at 201296_s_at NM_015626 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015626.1 /DEF=Homo sapiens DKFZP564A122 protein (DKFZP564A122), mRNA. /FEA=mRNA /GEN=DKFZP564A122 /PROD=DKFZP564A122 protein /DB_XREF=gi:7661595 /UG=Hs.187991 DKFZP564A122 protein /FL=gb:AF106684.1 gb:NM_015626.1 NM_015626 WD repeat and SOCS box containing 1 WSB1 26118 NM_015626 /// NM_134264 /// NM_134265 /// XM_005257963 /// XR_243778 /// XR_429881 0016310 // phosphorylation // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation -78.67 510.71 -0.95 0.37 0.46 -4.60
207181_s_at 207181_s_at NM_001227 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001227.1 /DEF=Homo sapiens caspase 7, apoptosis-related cysteine protease (CASP7), mRNA. /FEA=mRNA /GEN=CASP7 /PROD=caspase 7, apoptosis-related cysteine protease /DB_XREF=gi:4502580 /UG=Hs.9216 caspase 7, apoptosis-related cysteine protease /FL=gb:U37448.1 gb:U40281.1 gb:U67319.1 gb:U67320.1 gb:NM_001227.1 NM_001227 caspase 7, apoptosis-related cysteine peptidase CASP7 840 NM_001227 /// NM_001267056 /// NM_001267057 /// NM_001267058 /// NM_033338 /// NM_033339 /// NM_033340 /// XM_006718016 /// XM_006718017 /// XM_006718018 /// XM_006718019 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006508 // proteolysis // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0008635 // activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c // traceable author statement /// 0009411 // response to UV // inferred from electronic annotation /// 0016485 // protein processing // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 0097194 // execution phase of apoptosis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0097153 // cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation 17.30 184.65 0.95 0.37 0.46 -4.60
201389_at 201389_at NM_002205 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002205.1 /DEF=Homo sapiens integrin, alpha 5 (fibronectin receptor, alpha polypeptide) (ITGA5), mRNA. /FEA=mRNA /GEN=ITGA5 /PROD=integrin alpha 5 precursor /DB_XREF=gi:4504750 /UG=Hs.149609 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) /FL=gb:NM_002205.1 NM_002205 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) ITGA5 3678 NM_002205 0001525 // angiogenesis // traceable author statement /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007613 // memory // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0031589 // cell-substrate adhesion // inferred from mutant phenotype /// 0033631 // cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0035313 // wound healing, spreading of epidermal cells // inferred from expression pattern /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype 0001726 // ruffle // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0071062 // alphav-beta3 integrin-vitronectin complex // traceable author statement 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // traceable author statement /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043184 // vascular endothelial growth factor receptor 2 binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation 58.10 968.30 0.95 0.37 0.46 -4.60
221270_s_at 221270_s_at NM_031209 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031209.1 /DEF=Homo sapiens tRNA-guanine transglycosylase (TGT), mRNA. /FEA=mRNA /GEN=TGT /PROD=tRNA-guanine transglycosylase /DB_XREF=gi:13654275 /FL=gb:NM_031209.1 NM_031209 queuine tRNA-ribosyltransferase 1 QTRT1 81890 NM_031209 0006400 // tRNA modification // traceable author statement /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008616 // queuosine biosynthetic process // inferred from electronic annotation /// 0008616 // queuosine biosynthetic process // inferred from sequence or structural similarity /// 0008616 // queuosine biosynthetic process // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statement 0005515 // protein binding // inferred from electronic annotation /// 0008479 // queuine tRNA-ribosyltransferase activity // inferred from sequence or structural similarity /// 0008479 // queuine tRNA-ribosyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 11.88 23.81 0.95 0.37 0.46 -4.60
202284_s_at 202284_s_at NM_000389 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000389.1 /DEF=Homo sapiens cyclin-dependent kinase inhibitor 1A (p21, Cip1) (CDKN1A), mRNA. /FEA=mRNA /GEN=CDKN1A /PROD=cyclin-dependent kinase inhibitor 1A (p21,Cip1) /DB_XREF=gi:11386202 /UG=Hs.179665 cyclin-dependent kinase inhibitor 1A (p21, Cip1) /FL=gb:NM_000389.1 gb:BC000275.1 gb:BC001935.1 gb:U03106.1 gb:L26165.1 gb:L25610.1 gb:U09579.1 NM_000389 cyclin-dependent kinase inhibitor 1A (p21, Cip1) CDKN1A 1026 NM_000389 /// NM_001220777 /// NM_001220778 /// NM_001291549 /// NM_078467 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0000082 // G1/S transition of mitotic cell cycle // inferred from direct assay /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007265 // Ras protein signal transduction // inferred from expression pattern /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009411 // response to UV // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // inferred from mutant phenotype /// 0033158 // regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042326 // negative regulation of phosphorylation // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043068 // positive regulation of programmed cell death // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0046685 // response to arsenic-containing substance // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048146 // positive regulation of fibroblast proliferation // inferred from mutant phenotype /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0071479 // cellular response to ionizing radiation // inferred from mutant phenotype /// 0071850 // mitotic cell cycle arrest // inferred from electronic annotation /// 0071901 // negative regulation of protein serine/threonine kinase activity // inferred from electronic annotation /// 0090398 // cellular senescence // inferred from mutant phenotype /// 0090400 // stress-induced premature senescence // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 2000278 // regulation of DNA biosynthetic process // inferred from electronic annotation /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from mutant phenotype 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070557 // PCNA-p21 complex // inferred from direct assay 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004861 // cyclin-dependent protein serine/threonine kinase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019912 // cyclin-dependent protein kinase activating kinase activity // inferred from direct assay /// 0030332 // cyclin binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 41.83 468.01 0.95 0.37 0.46 -4.60
202101_s_at 202101_s_at NM_002881 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002881.1 /DEF=Homo sapiens v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) (RALB), mRNA. /FEA=mRNA /GEN=RALB /PROD=v-ral simian leukemia viral oncogene homolog B /DB_XREF=gi:4506404 /UG=Hs.250811 v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) /FL=gb:M35416.1 gb:NM_002881.1 NM_002881 v-ral simian leukemia viral oncogene homolog B RALB 5899 NM_002881 /// XM_005263724 /// XM_005263727 /// XM_005263728 /// XM_005263729 0000910 // cytokinesis // inferred from direct assay /// 0001928 // regulation of exocyst assembly // inferred from sequence or structural similarity /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0060178 // regulation of exocyst localization // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay -16.38 142.41 -0.95 0.37 0.46 -4.60
201804_x_at 201804_x_at NM_001281 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001281.1 /DEF=Homo sapiens cytoskeleton-associated protein 1 (CKAP1), mRNA. /FEA=mRNA /GEN=CKAP1 /PROD=CKAP1 /DB_XREF=gi:4502848 /UG=Hs.31053 cytoskeleton-associated protein 1 /FL=gb:AF013488.1 gb:NM_001281.1 gb:D49738.1 NM_001281 tubulin folding cofactor B TBCB 1155 NM_001281 /// XM_006722998 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // traceable author statement 0005515 // protein binding // inferred from physical interaction -45.68 515.29 -0.95 0.37 0.46 -4.60
212358_at 212358_at AL117468 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL117468.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586N1922 (from clone DKFZp586N1922); partial cds. /FEA=mRNA /GEN=DKFZp586N1922 /PROD=hypothetical protein /DB_XREF=gi:5911934 /UG=Hs.7357 DKFZP586N1922 protein AL117468 CAP-GLY domain containing linker protein 3 CLIP3 25999 NM_001199570 /// NM_015526 0001934 // positive regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0010828 // positive regulation of glucose transport // inferred from sequence or structural similarity /// 0018230 // peptidyl-L-cysteine S-palmitoylation // inferred from mutant phenotype /// 0031115 // negative regulation of microtubule polymerization // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0044091 // membrane biogenesis // inferred from mutant phenotype /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0072321 // chaperone-mediated protein transport // inferred from mutant phenotype /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from direct assay /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0032588 // trans-Golgi network membrane // inferred from mutant phenotype /// 0045121 // membrane raft // inferred from direct assay /// 0055038 // recycling endosome membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // inferred from mutant phenotype /// 0035594 // ganglioside binding // inferred from direct assay 23.35 74.42 0.95 0.37 0.46 -4.60
200804_at 200804_at NM_003217 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003217.1 /DEF=Homo sapiens testis enhanced gene transcript (TEGT), mRNA. /FEA=mRNA /GEN=TEGT /PROD=testis enhanced gene transcript /DB_XREF=gi:4507432 /UG=Hs.74637 testis enhanced gene transcript (BAX inhibitor 1) /FL=gb:BC000916.1 gb:AF033095.1 gb:NM_003217.1 NM_003217 transmembrane BAX inhibitor motif containing 6 TMBIM6 7009 NM_001098576 /// NM_003217 /// XM_005269126 0006915 // apoptotic process // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 44.42 709.01 0.95 0.37 0.46 -4.60
200910_at 200910_at NM_005998 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005998.1 /DEF=Homo sapiens chaperonin containing TCP1, subunit 3 (gamma) (CCT3), mRNA. /FEA=mRNA /GEN=CCT3 /PROD=chaperonin containing TCP1, subunit 3 (gamma) /DB_XREF=gi:5174726 /UG=Hs.1708 chaperonin containing TCP1, subunit 3 (gamma) /FL=gb:NM_005998.1 NM_005998 chaperonin containing TCP1, subunit 3 (gamma) /// uncharacterized LOC101927137 CCT3 /// LOC101927137 7203 /// 101927137 NM_001008800 /// NM_001008883 /// NM_005998 /// NR_036564 /// NR_036565 /// XR_246167 /// XR_246168 /// XR_246169 /// XR_246170 /// XR_246171 /// XR_246172 /// XR_246173 /// XR_252798 /// XR_252799 /// XR_252800 /// XR_252801 /// XR_252802 /// XR_252803 /// XR_252804 /// XR_428788 /// XR_428789 /// XR_428790 /// XR_428791 /// XR_428792 /// XR_428793 /// XR_428794 /// XR_428795 /// XR_428796 /// XR_432624 /// XR_432625 /// XR_432626 /// XR_432627 /// XR_432628 /// XR_432629 /// XR_432630 /// XR_432631 /// XR_432632 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005856 // cytoskeleton // traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 45.50 1073.67 0.94 0.38 0.46 -4.60
201612_at 201612_at NM_000696 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000696.1 /DEF=Homo sapiens aldehyde dehydrogenase 9 (gamma-aminobutyraldehyde dehydrogenase, E3 isozyme) (ALDH9), mRNA. /FEA=mRNA /GEN=ALDH9 /PROD=aldehyde dehydrogenase 9(gamma-aminobutyraldehyde dehydrogenase, E3 isozyme) /DB_XREF=gi:4502046 /UG=Hs.2533 aldehyde dehydrogenase 9 family, member A1 /FL=gb:U34252.1 gb:NM_000696.1 gb:AF172093.1 NM_000696 aldehyde dehydrogenase 9 family, member A1 ALDH9A1 223 NM_000696 0001822 // kidney development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0006081 // cellular aldehyde metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009437 // carnitine metabolic process // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042136 // neurotransmitter biosynthetic process // inferred from direct assay /// 0042445 // hormone metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045329 // carnitine biosynthetic process // inferred from electronic annotation /// 0045329 // carnitine biosynthetic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // traceable author statement /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019145 // aminobutyraldehyde dehydrogenase activity // inferred from direct assay /// 0033737 // 1-pyrroline dehydrogenase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043176 // amine binding // inferred from electronic annotation /// 0047105 // 4-trimethylammoniobutyraldehyde dehydrogenase activity // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 17.97 187.34 0.94 0.38 0.46 -4.60
203714_s_at 203714_s_at NM_003193 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003193.2 /DEF=Homo sapiens tubulin-specific chaperone e (TBCE), mRNA. /FEA=mRNA /GEN=TBCE /PROD=beta-tubulin cofactor E /DB_XREF=gi:6006029 /UG=Hs.32675 tubulin-specific chaperone e /FL=gb:U61232.1 gb:NM_003193.2 NM_003193 tubulin folding cofactor E TBCE 6905 NM_001079515 /// NM_001287801 /// NM_001287802 /// NM_003193 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007023 // post-chaperonin tubulin folding pathway // inferred from direct assay /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0014889 // muscle atrophy // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048589 // developmental growth // inferred from electronic annotation /// 0048936 // peripheral nervous system neuron axonogenesis // inferred from electronic annotation /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // traceable author statement 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0051087 // chaperone binding // traceable author statement 23.20 141.93 0.94 0.38 0.46 -4.60
221267_s_at 221267_s_at NM_031213 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031213.1 /DEF=Homo sapiens hypothetical protein MGC:5244, (MGC:5244), mRNA. /FEA=mRNA /GEN=MGC:5244 /PROD=hypothetical protein MGC:5244, /DB_XREF=gi:13654283 /FL=gb:NM_031213.1 NM_031213 abhydrolase domain containing 17A ABHD17A 81926 NM_001130111 /// NM_031213 /// XM_006722918 0008152 // metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation -22.82 277.64 -0.94 0.38 0.46 -4.60
218245_at 218245_at NM_015516 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015516.1 /DEF=Homo sapiens hypothetical protein, estradiol-induced (E2IG4), mRNA. /FEA=mRNA /GEN=E2IG4 /PROD=hypothetical protein, estradiol-induced /DB_XREF=gi:7661667 /UG=Hs.8361 hypothetical protein, estradiol-induced /FL=gb:AF191019.1 gb:NM_015516.1 NM_015516 tsukushi, small leucine rich proteoglycan TSKU 25987 NM_001258210 /// NM_015516 /// XM_005273892 0010468 // regulation of gene expression // inferred from electronic annotation /// 0021540 // corpus callosum morphogenesis // inferred from electronic annotation /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0021960 // anterior commissure morphogenesis // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from electronic annotation /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0061073 // ciliary body morphogenesis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 16.40 59.72 0.94 0.38 0.46 -4.60
200955_at 200955_at NM_006839 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006839.1 /DEF=Homo sapiens inner membrane protein, mitochondrial (mitofilin) (IMMT), mRNA. /FEA=mRNA /GEN=IMMT /PROD=inner membrane protein, mitochondrial(mitofilin) /DB_XREF=gi:5803114 /UG=Hs.78504 inner membrane protein, mitochondrial (mitofilin) /FL=gb:L42572.1 gb:BC002412.1 gb:D21094.1 gb:NM_006839.1 NM_006839 inner membrane protein, mitochondrial IMMT 10989 NM_001100169 /// NM_001100170 /// NM_006839 /// XM_005264110 /// XM_005264113 /// XM_005264114 0009409 // response to cold // inferred from electronic annotation /// 0051560 // mitochondrial calcium ion homeostasis // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -17.83 290.86 -0.94 0.38 0.46 -4.60
210645_s_at 210645_s_at D83077 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D83077.1 /DEF=Homo sapiens mRNA for TPRD, complete cds. /FEA=mRNA /PROD=TPRD /DB_XREF=gi:1304131 /UG=Hs.118174 tetratricopeptide repeat domain 3 /FL=gb:D83077.1 D83077 tetratricopeptide repeat domain 3 /// tetratricopeptide repeat domain 3 pseudogene 1 TTC3 /// TTC3P1 7267 /// 286495 NM_001001894 /// NM_003316 /// NR_030737 /// XM_005261045 /// XM_005261046 /// XM_005261047 /// XM_005261048 /// XM_005261049 /// XM_005261050 /// XM_005261051 /// XM_005261052 /// XM_005261053 /// XM_005261054 /// XM_005261055 /// XM_005261056 /// XM_005261058 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0010771 // negative regulation of cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005773 // vacuole // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -16.28 439.59 -0.94 0.38 0.46 -4.60
209159_s_at 209159_s_at AV724216 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV724216 /FEA=EST /DB_XREF=gi:10828381 /DB_XREF=est:AV724216 /CLONE=HTBARB01 /UG=Hs.322430 NDRG family, member 4 /FL=gb:AB044944.1 gb:AL136584.1 AV724216 NDRG family member 4 NDRG4 65009 NM_001130487 /// NM_001242833 /// NM_001242834 /// NM_001242835 /// NM_001242836 /// NM_020465 /// NM_022910 /// NR_040072 /// XM_006721252 /// XM_006721253 /// XM_006721254 /// XM_006721255 /// XM_006721256 /// XM_006721257 /// XM_006721258 /// XM_006721259 /// XM_006721260 /// XM_006721261 /// XM_006721262 0006950 // response to stress // non-traceable author statement /// 0016049 // cell growth // non-traceable author statement /// 0030154 // cell differentiation // non-traceable author statement 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // inferred from electronic annotation 18.80 78.12 0.94 0.38 0.46 -4.60
219027_s_at 219027_s_at NM_006901 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006901.1 /DEF=Homo sapiens myosin IXA (MYO9A), mRNA. /FEA=mRNA /GEN=MYO9A /PROD=myosin IXA /DB_XREF=gi:5902011 /UG=Hs.23395 myosin IXA /FL=gb:AF117888.1 gb:NM_006901.1 NM_006901 myosin IXA MYO9A 4649 NM_006901 /// XM_005254404 /// XM_006720539 /// XM_006720540 /// XM_006720541 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007601 // visual perception // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016461 // unconventional myosin complex // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -18.97 102.01 -0.94 0.38 0.46 -4.60
48030_i_at 48030_i_at H93077 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. H93077:yv05a04.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-241806 /clone_end=3' /gb=H93077 /gi=1099405 /ug=Hs.10235 /len=604 H93077 fatty acid hydroxylase domain containing 2 FAXDC2 10826 NM_016348 /// NM_032385 /// XM_005268356 /// XM_005268358 /// XM_006714753 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation -53.50 628.58 -0.94 0.38 0.46 -4.60
202951_at 202951_at BE048506 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE048506 /FEA=EST /DB_XREF=gi:8365559 /DB_XREF=est:hr49h06.x1 /CLONE=IMAGE:3131867 /UG=Hs.8724 serine threonine protein kinase /FL=gb:NM_007271.1 BE048506 serine/threonine kinase 38 STK38 11329 NM_007271 /// XM_005248839 /// XM_006714988 /// XM_006714989 /// XM_006714990 0006464 // cellular protein modification process // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 15.73 122.86 0.94 0.38 0.46 -4.60
201390_s_at 201390_s_at NM_001320 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001320.1 /DEF=Homo sapiens casein kinase 2, beta polypeptide (CSNK2B), mRNA. /FEA=mRNA /GEN=CSNK2B /PROD=casein kinase 2, beta polypeptide /DB_XREF=gi:10334850 /UG=Hs.165843 casein kinase 2, beta polypeptide /FL=gb:NM_001320.1 NM_001320 casein kinase 2, beta polypeptide CSNK2B 1460 NM_001282385 /// NM_001320 0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032927 // positive regulation of activin receptor signaling pathway // inferred from mutant phenotype /// 0033211 // adiponectin-activated signaling pathway // inferred from direct assay /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043623 // cellular protein complex assembly // non-traceable author statement /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // non-traceable author statement /// 0051101 // regulation of DNA binding // non-traceable author statement /// 0061154 // endothelial tube morphogenesis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005956 // protein kinase CK2 complex // non-traceable author statement /// 0031519 // PcG protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // non-traceable author statement /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 31.85 495.68 0.94 0.38 0.46 -4.60
202646_s_at 202646_s_at AA167775 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA167775 /FEA=EST /DB_XREF=gi:1744943 /DB_XREF=est:zq40g07.s1 /CLONE=IMAGE:632220 /UG=Hs.260523 neuroblastoma RAS viral (v-ras) oncogene homolog /FL=gb:BC005219.1 gb:NM_002524.2 AA167775 cold shock domain containing E1, RNA-binding CSDE1 7812 NM_001007553 /// NM_001130523 /// NM_001242891 /// NM_001242892 /// NM_001242893 /// NM_007158 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008542 // visual learning // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008584 // male gonad development // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0035022 // positive regulation of Rac protein signal transduction // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0070966 // nuclear-transcribed mRNA catabolic process, no-go decay // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 34.45 510.30 0.94 0.38 0.46 -4.60
221506_s_at 221506_s_at BG258639 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG258639 /FEA=EST /DB_XREF=gi:12768455 /DB_XREF=est:602380357F1 /CLONE=IMAGE:4510766 /UG=Hs.278378 karyopherin beta 2b, transportin /FL=gb:AF019039.1 BG258639 transportin 2 TNPO2 30000 NM_001136195 /// NM_001136196 /// NM_013433 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation 21.30 157.65 0.94 0.38 0.46 -4.60
217249_x_at 217249_x_at AC004544 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC004544 /DEF=Homo sapiens BAC clone CTB-162B4 from 4 /FEA=CDS /DB_XREF=gi:3041843 /UG=Hs.248095 Homo sapiens BAC clone CTB-162B4 from 4 AC004544 /// cytochrome c oxidase subunit VIIa polypeptide 2 (liver) pseudogene 2 COX7A2P2 /// COX7A2P2 32.47 367.99 0.94 0.38 0.46 -4.60
200998_s_at 200998_s_at AW029619 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW029619 /FEA=EST /DB_XREF=gi:5888375 /DB_XREF=est:wx14e05.x1 /CLONE=IMAGE:2543648 /UG=Hs.74368 transmembrane protein (63kD), endoplasmic reticulumGolgi intermediate compartment /FL=gb:NM_006825.1 AW029619 cytoskeleton-associated protein 4 CKAP4 10970 NM_006825 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0032784 // regulation of DNA-templated transcription, elongation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 125.95 947.67 0.94 0.38 0.46 -4.60
51774_s_at 51774_s_at AW014299 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AW014299:UI-H-BI0p-aax-a-07-0-UI.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-2710573 /clone_end=3' /gb=AW014299 /gi=5863056 /ug=Hs.238968 /len=391 AW014299 ubiquitin-conjugating enzyme E2D 4 (putative) UBE2D4 51619 NM_015983 /// XM_005249772 /// XM_006715734 /// XM_006715735 /// XM_006715736 /// XM_006715737 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035519 // protein K29-linked ubiquitination // inferred from direct assay /// 0044314 // protein K27-linked ubiquitination // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0085020 // protein K6-linked ubiquitination // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 17.28 312.94 0.93 0.38 0.46 -4.60
214894_x_at 214894_x_at AK023285 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023285.1 /DEF=Homo sapiens cDNA FLJ13223 fis, clone OVARC1000001, highly similar to Homo sapiens mRNA for actin binding protein ABP620. /FEA=mRNA /DB_XREF=gi:10435154 /UG=Hs.108258 actin binding protein; macrophin (microfilament and actin filament cross-linker protein) AK023285 microtubule-actin crosslinking factor 1 MACF1 23499 NM_012090 /// NM_033044 /// XM_005270694 /// XM_005270695 /// XM_005270696 /// XM_005270697 /// XM_005270698 /// XM_005270700 /// XM_006710519 /// XM_006710520 /// XM_006710521 /// XM_006710522 /// XM_006710523 /// XM_006710524 /// XM_006710525 /// XM_006710526 /// XM_006710527 /// XM_006710528 /// XM_006710529 /// XM_006710530 /// XM_006710531 /// XM_006710532 /// XM_006710533 /// XM_006710534 /// XM_006710535 /// XM_006710536 /// XM_006710537 /// XM_006710538 /// XM_006710539 /// XM_006710540 0001707 // mesoderm formation // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006620 // posttranslational protein targeting to membrane // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0010632 // regulation of epithelial cell migration // inferred from sequence or structural similarity /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0043001 // Golgi to plasma membrane protein transport // inferred from direct assay /// 0051893 // regulation of focal adhesion assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // non-traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // non-traceable author statement -99.12 516.61 -0.93 0.38 0.46 -4.60
201404_x_at 201404_x_at BC000268 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000268.1 /DEF=Homo sapiens, proteasome (prosome, macropain) subunit, beta type, 2, clone MGC:1664, mRNA, complete cds. /FEA=mRNA /PROD=proteasome (prosome, macropain) subunit, betatype, 2 /DB_XREF=gi:12653014 /UG=Hs.1390 proteasome (prosome, macropain) subunit, beta type, 2 /FL=gb:BC000268.1 gb:NM_002794.1 gb:D26599.1 BC000268 proteasome (prosome, macropain) subunit, beta type, 2 PSMB2 5690 NM_001199779 /// NM_001199780 /// NM_002794 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -33.20 161.38 -0.93 0.38 0.46 -4.60
204249_s_at 204249_s_at NM_005574 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005574.2 /DEF=Homo sapiens LIM domain only 2 (rhombotin-like 1) (LMO2), mRNA. /FEA=mRNA /GEN=LMO2 /PROD=LIM domain only 2 /DB_XREF=gi:6633806 /UG=Hs.184585 LIM domain only 2 (rhombotin-like 1) /FL=gb:NM_005574.2 NM_005574 LIM domain only 2 (rhombotin-like 1) LMO2 4005 NM_001142315 /// NM_001142316 /// NM_005574 /// XM_005252920 /// XM_005252921 /// XM_006718229 0007275 // multicellular organismal development // traceable author statement /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from direct assay /// 0045647 // negative regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0097067 // cellular response to thyroid hormone stimulus // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from physical interaction /// 0070888 // E-box binding // inferred from direct assay -21.90 166.05 -0.93 0.38 0.46 -4.60
201123_s_at 201123_s_at NM_001970 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001970.1 /DEF=Homo sapiens eukaryotic translation initiation factor 5A (EIF5A), mRNA. /FEA=mRNA /GEN=EIF5A /PROD=eukaryotic translation initiation factor 5A /DB_XREF=gi:4503544 /UG=Hs.119140 eukaryotic translation initiation factor 5A /FL=gb:BC000751.1 gb:BC001832.1 gb:M23419.1 gb:NM_001970.1 NM_001970 eukaryotic translation initiation factor 5A EIF5A 1984 NM_001143760 /// NM_001143761 /// NM_001143762 /// NM_001970 /// XM_005256509 0006406 // mRNA export from nucleus // inferred from mutant phenotype /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation /// 0006452 // translational frameshifting // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008612 // peptidyl-lysine modification to peptidyl-hypusine // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045901 // positive regulation of translational elongation // inferred from sequence or structural similarity /// 0045905 // positive regulation of translational termination // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005642 // annulate lamellae // inferred from direct assay /// 0005643 // nuclear pore // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003746 // translation elongation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0017070 // U6 snRNA binding // inferred from direct assay /// 0043022 // ribosome binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction -31.95 159.30 -0.93 0.38 0.46 -4.60
211026_s_at 211026_s_at BC006230 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006230.1 /DEF=Homo sapiens, lysophospholipase-like, clone MGC:10338, mRNA, complete cds. /FEA=mRNA /PROD=lysophospholipase-like /DB_XREF=gi:13623260 /FL=gb:BC006230.1 BC006230 monoglyceride lipase MGLL 11343 NM_001003794 /// NM_001256585 /// NM_007283 /// XM_005247093 /// XM_005247094 0006629 // lipid metabolic process // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from sequence or structural similarity /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // inferred from sequence or structural similarity /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0036155 // acylglycerol acyl-chain remodeling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046464 // acylglycerol catabolic process // inferred from sequence or structural similarity /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0051930 // regulation of sensory perception of pain // inferred from sequence or structural similarity /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 2000124 // regulation of endocannabinoid signaling pathway // inferred from sequence or structural similarity 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0045202 // synapse // inferred from electronic annotation 0004622 // lysophospholipase activity // traceable author statement /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0047372 // acylglycerol lipase activity // inferred from sequence or structural similarity /// 0047372 // acylglycerol lipase activity // traceable author statement -42.05 446.48 -0.93 0.38 0.46 -4.60
209210_s_at 209210_s_at Z24725 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:Z24725.1 /DEF=H.sapiens mitogen inducible gene mig-2, complete CDS. /FEA=mRNA /PROD=mitogen inducible gene mig-2 /DB_XREF=gi:505032 /UG=Hs.75260 mitogen inducible 2 /FL=gb:Z24725.1 Z24725 fermitin family member 2 FERMT2 10979 NM_001134999 /// NM_001135000 /// NM_006832 /// XM_005267285 /// XM_006720008 /// XM_006720009 /// XM_006720010 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from mutant phenotype /// 0007160 // cell-matrix adhesion // inferred from sequence or structural similarity /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // non-traceable author statement /// 0033622 // integrin activation // inferred from mutant phenotype /// 0034329 // cell junction assembly // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0048041 // focal adhesion assembly // inferred from sequence or structural similarity /// 0072657 // protein localization to membrane // inferred from sequence or structural similarity 0001725 // stress fiber // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation -44.92 654.76 -0.93 0.38 0.46 -4.60
208619_at 208619_at L40326 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L40326.1 /DEF=Homo sapiens Hepatitis B virus X-associated protein 1 mRNA, complete cds. /FEA=mRNA /PROD=X-associated protein 1 /DB_XREF=gi:695361 /UG=Hs.108327 damage-specific DNA binding protein 1 (127kD) /FL=gb:U18299.1 gb:U32986.1 gb:NM_001923.2 gb:L40326.1 L40326 damage-specific DNA binding protein 1, 127kDa DDB1 1642 NM_001923 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035518 // histone H2A monoubiquitination // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0070914 // UV-damage excision repair // inferred from direct assay /// 1901990 // regulation of mitotic cell cycle phase transition // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0031464 // Cul4A-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0031465 // Cul4B-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0080008 // Cul4-RING E3 ubiquitin ligase complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003684 // damaged DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 30.23 456.89 0.93 0.38 0.47 -4.60
202457_s_at 202457_s_at AA911231 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA911231 /FEA=EST /DB_XREF=gi:3050521 /DB_XREF=est:ol49c10.s1 /CLONE=IMAGE:1526802 /UG=Hs.272458 protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha) /FL=gb:J05480.1 gb:L14778.1 gb:NM_000944.1 gb:AL353950.1 AA911231 protein phosphatase 3, catalytic subunit, alpha isozyme PPP3CA 5530 NM_000944 /// NM_001130691 /// NM_001130692 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // non-traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0014883 // transition between fast and slow fiber // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0033173 // calcineurin-NFAT signaling cascade // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from direct assay /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042110 // T cell activation // traceable author statement /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005955 // calcineurin complex // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // non-traceable author statement /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // non-traceable author statement /// 0008144 // drug binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0033192 // calmodulin-dependent protein phosphatase activity // inferred from direct assay /// 0033192 // calmodulin-dependent protein phosphatase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from physical interaction -16.35 212.05 -0.93 0.38 0.47 -4.60
213699_s_at 213699_s_at AA854017 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA854017 /FEA=EST /DB_XREF=gi:2941555 /DB_XREF=est:aj52d02.s1 /CLONE=IMAGE:1393923 /UG=Hs.74405 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, theta polypeptide AA854017 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta YWHAQ 10971 NM_006826 0006605 // protein targeting // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0043234 // protein complex // inferred from physical interaction /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 58.80 1658.88 0.93 0.38 0.47 -4.60
218084_x_at 218084_x_at NM_014164 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014164.2 /DEF=Homo sapiens FXYD domain-containing ion transport regulator 5 (FXYD5), mRNA. /FEA=mRNA /GEN=FXYD5 /PROD=related to ion channel /DB_XREF=gi:11612664 /UG=Hs.294135 FXYD domain-containing ion transport regulator 5 /FL=gb:NM_014164.2 gb:AF161462.1 NM_014164 FXYD domain containing ion transport regulator 5 FXYD5 53827 NM_001164605 /// NM_014164 /// NM_144779 /// NR_028406 /// XM_006723245 /// XM_006723246 /// XM_006723247 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0030033 // microvillus assembly // non-traceable author statement /// 0034220 // ion transmembrane transport // inferred from electronic annotation /// 0046588 // negative regulation of calcium-dependent cell-cell adhesion // non-traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from direct assay -33.97 689.76 -0.93 0.38 0.47 -4.60
213865_at 213865_at AI378788 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI378788 /FEA=EST /DB_XREF=gi:4188641 /DB_XREF=est:tc67b04.x1 /CLONE=IMAGE:2069647 /UG=Hs.153445 Human mRNA for unknown product, partial cds AI378788 discoidin, CUB and LCCL domain containing 2 DCBLD2 131566 NM_080927 0007155 // cell adhesion // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030522 // intracellular receptor signaling pathway // non-traceable author statement /// 0042060 // wound healing // inferred from direct assay 0005887 // integral component of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -16.65 44.38 -0.92 0.38 0.47 -4.60
210110_x_at 210110_x_at AF132363 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF132363.1 /DEF=Homo sapiens hnRNP 2H9D mRNA, complete cds. /FEA=mRNA /PROD=hnRNP 2H9D /DB_XREF=gi:7739446 /UG=Hs.279681 heterogeneous nuclear ribonucleoprotein H3 (2H9) /FL=gb:AF132363.1 AF132363 heterogeneous nuclear ribonucleoprotein H3 (2H9) HNRNPH3 3189 NM_012207 /// NM_021644 /// XM_005269748 /// XM_005269749 /// XM_005269751 /// XM_005269752 /// XM_005269753 /// XM_005269754 /// XM_006717816 /// XM_006717817 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005681 // spliceosomal complex // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -35.95 208.47 -0.92 0.39 0.47 -4.60
211535_s_at 211535_s_at M60485 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M60485.1 /DEF=Human fibroblast growth factor receptor mRNA, complete cds. /FEA=mRNA /PROD=fibroblast growth factor receptor /DB_XREF=gi:182560 /UG=Hs.748 fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) /FL=gb:M60485.1 M60485 fibroblast growth factor receptor 1 FGFR1 2260 NM_001174063 /// NM_001174064 /// NM_001174065 /// NM_001174066 /// NM_001174067 /// NM_015850 /// NM_023105 /// NM_023106 /// NM_023107 /// NM_023108 /// NM_023109 /// NM_023110 /// NM_023111 /// NM_032191 /// XM_006716303 /// XM_006716304 /// XM_006716305 /// XM_006716306 /// XM_006716307 /// XM_006716308 /// XM_006716309 /// XM_006716310 /// XM_006716311 /// XM_006716312 /// XM_006716313 /// XM_006716314 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000165 // MAPK cascade // traceable author statement /// 0001501 // skeletal system development // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001759 // organ induction // inferred from electronic annotation /// 0001764 // neuron migration // traceable author statement /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from genetic interaction /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from physical interaction /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010518 // positive regulation of phospholipase activity // traceable author statement /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010863 // positive regulation of phospholipase C activity // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0014068 // positive regulation of phosphatidylinositol 3-kinase signaling // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // traceable author statement /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0021769 // orbitofrontal cortex development // inferred from electronic annotation /// 0021847 // ventricular zone neuroblast division // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0035607 // fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042473 // outer ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0043009 // chordate embryonic development // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPK cascade // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045595 // regulation of cell differentiation // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048339 // paraxial mesoderm development // inferred from electronic annotation /// 0048378 // regulation of lateral mesodermal cell fate specification // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048699 // generation of neurons // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // traceable author statement /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060117 // auditory receptor cell development // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 2001239 // regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005576 // extracellular region // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor-activated receptor activity // inferred from direct assay /// 0005007 // fibroblast growth factor-activated receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction 22.70 140.85 0.92 0.39 0.47 -4.60
201156_s_at 201156_s_at AF141304 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF141304.1 /DEF=Homo sapiens small GTPase (RAB5C) mRNA, complete cds. /FEA=CDS /GEN=RAB5C /PROD=small GTPase /DB_XREF=gi:7672664 /UG=Hs.479 RAB5C, member RAS oncogene family /FL=gb:NM_004583.1 gb:U11293.1 gb:U18420.1 gb:AF141304.1 AF141304 RAB5C, member RAS oncogene family RAB5C 5878 NM_001252039 /// NM_004583 /// NM_201434 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay -24.10 262.80 -0.92 0.39 0.47 -4.60
209251_x_at 209251_x_at BC004949 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004949.1 /DEF=Homo sapiens, tubulin alpha 6, clone MGC:10851, mRNA, complete cds. /FEA=mRNA /PROD=tubulin alpha 6 /DB_XREF=gi:13436316 /UG=Hs.272897 Tubulin, alpha, brain-specific /FL=gb:BC004949.1 BC004949 tubulin, alpha 1c TUBA1C 84790 NM_032704 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 295.98 3573.49 0.92 0.39 0.47 -4.60
201220_x_at 201220_x_at NM_001329 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001329.1 /DEF=Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA. /FEA=mRNA /GEN=CTBP2 /PROD=C-terminal binding protein 2, isoform 1 /DB_XREF=gi:4557498 /UG=Hs.171391 C-terminal binding protein 2 /FL=gb:AF016507.1 gb:NM_001329.1 NM_001329 C-terminal binding protein 2 CTBP2 1488 NM_001083914 /// NM_001290214 /// NM_001290215 /// NM_001329 /// NM_022802 /// XM_005269561 /// XM_005269562 /// XM_005269563 /// XM_005269564 /// XM_005269565 /// XM_005269567 /// XM_005269568 /// XM_005269569 /// XM_005269570 /// XM_005269571 /// XM_005269572 /// XM_006717641 /// XM_006717642 /// XM_006717643 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0019079 // viral genome replication // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 39.30 577.05 0.92 0.39 0.47 -4.60
211048_s_at 211048_s_at BC006344 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006344.1 /DEF=Homo sapiens, protein disulfide isomerase related protein (calcium-binding protein, intestinal-related), clone MGC:13117, mRNA, complete cds. /FEA=mRNA /PROD=protein disulfide isomerase related protein(calcium-binding protein, intestinal-related) /DB_XREF=gi:13623480 /FL=gb:BC006344.1 BC006344 protein disulfide isomerase family A, member 4 PDIA4 9601 NM_004911 /// XM_006716185 0006457 // protein folding // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0009306 // protein secretion // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // not recorded /// 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -88.25 526.17 -0.92 0.39 0.47 -4.60
213287_s_at 213287_s_at X14487 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X14487 /DEF=Human gene for acidic (type I) cytokeratin 10 /FEA=mRNA /DB_XREF=gi:28316 /UG=Hs.99936 keratin 10 (epidermolytic hyperkeratosis; keratosis palmaris et plantaris) X14487 keratin 10 KRT10 3858 NM_000421 /// XM_005257343 0030216 // keratinocyte differentiation // inferred from expression pattern /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005882 // intermediate filament // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0045095 // keratin filament // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0030280 // structural constituent of epidermis // non-traceable author statement 48.08 204.86 0.92 0.39 0.47 -4.60
218338_at 218338_at NM_004426 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004426.1 /DEF=Homo sapiens early development regulator 1 (homolog of polyhomeotic 1) (EDR1), mRNA. /FEA=mRNA /GEN=EDR1 /PROD=early development regulator 1 /DB_XREF=gi:11038623 /UG=Hs.305985 early development regulator 1 (homolog of polyhomeotic 1) /FL=gb:NM_004426.1 NM_004426 polyhomeotic homolog 1 (Drosophila) PHC1 1911 NM_004426 /// XM_005253334 /// XM_005253336 0006810 // transport // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // traceable author statement /// 0015761 // mannose transport // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from direct assay /// 0071300 // cellular response to retinoic acid // inferred from electronic annotation 0000323 // lytic vacuole // inferred from electronic annotation /// 0001739 // sex chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005770 // late endosome // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from direct assay /// 0035102 // PRC1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015578 // mannose transmembrane transporter activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 16.68 66.41 0.92 0.39 0.47 -4.60
200695_at 200695_at NM_014225 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014225.1 /DEF=Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform (PPP2R1A), mRNA. /FEA=mRNA /GEN=PPP2R1A /PROD=protein phosphatase 2 (formerly 2A), regulatorysubunit A (PR 65), alpha isoform /DB_XREF=gi:7657474 /UG=Hs.173902 protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform /FL=gb:J02902.1 gb:NM_014225.1 NM_014225 protein phosphatase 2, regulatory subunit A, alpha PPP2R1A 5518 NM_014225 /// NR_033500 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000188 // inactivation of MAPK activity // non-traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006275 // regulation of DNA replication // non-traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006461 // protein complex assembly // traceable author statement /// 0006470 // protein dephosphorylation // traceable author statement /// 0006672 // ceramide metabolic process // non-traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0007059 // chromosome segregation // inferred from direct assay /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0008380 // RNA splicing // non-traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010033 // response to organic substance // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019932 // second-messenger-mediated signaling // non-traceable author statement /// 0030111 // regulation of Wnt signaling pathway // non-traceable author statement /// 0030155 // regulation of cell adhesion // non-traceable author statement /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0040008 // regulation of growth // non-traceable author statement /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // non-traceable author statement /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // non-traceable author statement /// 0070262 // peptidyl-serine dephosphorylation // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from direct assay /// 0000159 // protein phosphatase type 2A complex // traceable author statement /// 0000775 // chromosome, centromeric region // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0015630 // microtubule cytoskeleton // non-traceable author statement /// 0016020 // membrane // non-traceable author statement 0003823 // antigen binding // inferred from physical interaction /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0046982 // protein heterodimerization activity // inferred from physical interaction -14.55 255.28 -0.92 0.39 0.47 -4.60
218711_s_at 218711_s_at NM_004657 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004657.1 /DEF=Homo sapiens serum deprivation response (phosphatidylserine-binding protein) (SDPR), mRNA. /FEA=mRNA /GEN=SDPR /PROD=serum deprivation response(phosphatidylserine-binding protein) /DB_XREF=gi:4759081 /UG=Hs.26530 serum deprivation response (phosphatidylserine-binding protein) /FL=gb:AF085481.1 gb:NM_004657.1 NM_004657 serum deprivation response SDPR 8436 NM_004657 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0001786 // phosphatidylserine binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation -28.92 199.36 -0.92 0.39 0.47 -4.60
210337_s_at 210337_s_at U18197 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U18197.1 /DEF=Human ATP:citrate lyase mRNA, complete cds. /FEA=mRNA /PROD=ATP:citrate lyase /DB_XREF=gi:603073 /UG=Hs.174140 ATP citrate lyase /FL=gb:U18197.1 U18197 ATP citrate lyase ACLY 47 NM_001096 /// NM_198830 /// XM_005257393 /// XM_005257394 /// XM_005257395 0006101 // citrate metabolic process // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006200 // ATP catabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from direct assay /// 0015936 // coenzyme A metabolic process // traceable author statement /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0031325 // positive regulation of cellular metabolic process // traceable author statement /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009346 // citrate lyase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003878 // ATP citrate synthase activity // traceable author statement /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046912 // transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 26.38 333.69 0.92 0.39 0.47 -4.60
205579_at 205579_at NM_000861 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000861.2 /DEF=Homo sapiens histamine receptor H1 (HRH1), mRNA. /FEA=mRNA /GEN=HRH1 /PROD=histamine receptor H1 /DB_XREF=gi:13435403 /UG=Hs.1570 histamine receptor H1 /FL=gb:NM_000861.2 gb:AF026261.1 gb:D28481.1 NM_000861 histamine receptor H1 HRH1 3269 NM_000861 /// NM_001098211 /// NM_001098212 /// NM_001098213 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // traceable author statement /// 0007613 // memory // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0032962 // positive regulation of inositol trisphosphate biosynthetic process // inferred from sequence or structural similarity /// 0043114 // regulation of vascular permeability // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0048016 // inositol phosphate-mediated signaling // inferred from sequence or structural similarity /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048245 // eosinophil chemotaxis // inferred from electronic annotation /// 0071420 // cellular response to histamine // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004969 // histamine receptor activity // inferred from sequence or structural similarity -15.85 116.55 -0.91 0.39 0.47 -4.60
212764_at 212764_at AI806174 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI806174 /FEA=EST /DB_XREF=gi:5392740 /DB_XREF=est:wf06h03.x1 /CLONE=IMAGE:2349845 /UG=Hs.232068 transcription factor 8 (represses interleukin 2 expression) AI806174 uncharacterized LOC100996668 /// zinc finger E-box binding homeobox 1 LOC100996668 /// ZEB1 6935 /// 100996668 NM_001128128 /// NM_001174093 /// NM_001174094 /// NM_001174095 /// NM_001174096 /// NM_030751 /// NR_024285 /// NR_024286 /// NR_024287 /// XM_005252575 /// XM_005252576 /// XM_006717497 /// XM_006717498 /// XM_006717499 /// XR_158862 /// XR_159196 /// XR_171848 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006955 // immune response // traceable author statement /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010464 // regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0033081 // regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048513 // organ development // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048752 // semicircular canal morphogenesis // inferred from electronic annotation /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from electronic annotation /// 0090103 // cochlea morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity -19.35 611.38 -0.91 0.39 0.47 -4.60
40446_at 40446_at AL021366 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL021366:cICK0721Q.4.1 (PHD finger protein 2) (isoform 2) /cds=(215,1918) /gb=AL021366 /gi=3169115 /ug=Hs.166204 /len=2260 AL021366 PHD finger protein 1 PHF1 5252 NM_002636 /// NM_024165 /// NR_027692 /// XM_006715109 /// XM_006715110 /// XM_006715111 /// XM_006726097 /// XM_006726098 /// XM_006726099 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0061086 // negative regulation of histone H3-K27 methylation // inferred from mutant phenotype /// 0061087 // positive regulation of histone H3-K27 methylation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0035098 // ESC/E(Z) complex // inferred from direct assay /// 0035861 // site of double-strand break // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -21.55 206.75 -0.91 0.39 0.47 -4.60
213179_at 213179_at BG289914 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG289914 /FEA=EST /DB_XREF=gi:13046183 /DB_XREF=est:602381329F1 /CLONE=IMAGE:4499023 /UG=Hs.293687 ESTs BG289914 RCD1 required for cell differentiation1 homolog (S. pombe) RQCD1 9125 NM_001271634 /// NM_001271635 /// NM_005444 /// NR_073390 /// XM_005246942 /// XM_005246943 /// XM_006712832 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007548 // sex differentiation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0033147 // negative regulation of intracellular estrogen receptor signaling pathway // inferred from mutant phenotype /// 2000327 // positive regulation of ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030014 // CCR4-NOT complex // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 21.48 142.89 0.91 0.39 0.47 -4.60
202418_at 202418_at NM_020470 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020470.1 /DEF=Homo sapiens putative transmembrane protein; homolog of yeast Golgi membrane protein Yif1p (Yip1p-interacting factor) (54TM), mRNA. /FEA=mRNA /GEN=54TM /PROD=putative transmembrane protein; homolog of yeastGolgi membrane protein Yif1p (Yip1p-interacting factor) /DB_XREF=gi:9994168 /UG=Hs.5809 putative transmembrane protein; homolog of yeast Golgi membrane protein Yif1p (Yip1p-interacting factor) /FL=gb:BC001299.1 gb:AF004876.1 gb:NM_020470.1 NM_020470 Yip1 interacting factor homolog A (S. cerevisiae) YIF1A 10897 NM_020470 /// XM_005273720 /// XM_005273721 0006810 // transport // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 20.75 289.30 0.91 0.39 0.47 -4.60
210149_s_at 210149_s_at AF061735 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF061735.1 /DEF=Homo sapiens clone 023e08 My032 protein mRNA, complete cds. /FEA=mRNA /PROD=My032 protein /DB_XREF=gi:12002005 /UG=Hs.307099 Homo sapiens clone 023e08 My032 protein mRNA, complete cds /FL=gb:AF061735.1 AF061735 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d ATP5H 10476 NM_001003785 /// NM_006356 0006200 // ATP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator 21.50 779.70 0.91 0.39 0.47 -4.60
201979_s_at 201979_s_at NM_006247 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006247.1 /DEF=Homo sapiens protein phosphatase 5, catalytic subunit (PPP5C), mRNA. /FEA=mRNA /GEN=PPP5C /PROD=protein phosphatase 5, catalytic subunit /DB_XREF=gi:5453957 /UG=Hs.75180 protein phosphatase 5, catalytic subunit /FL=gb:BC001970.1 gb:NM_006247.1 NM_006247 protein phosphatase 5, catalytic subunit PPP5C 5536 NM_001204284 /// NM_006247 0006281 // DNA repair // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007067 // mitotic nuclear division // traceable author statement /// 0007165 // signal transduction // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043278 // response to morphine // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from sequence or structural similarity /// 0004722 // protein serine/threonine phosphatase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 11.03 98.41 0.91 0.39 0.47 -4.60
202423_at 202423_at NM_006766 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006766.1 /DEF=Homo sapiens zinc finger protein 220 (ZNF220), mRNA. /FEA=mRNA /GEN=ZNF220 /PROD=zinc finger protein 220 /DB_XREF=gi:5803097 /UG=Hs.82210 zinc finger protein 220 /FL=gb:U47742.1 gb:NM_006766.1 NM_006766 K(lysine) acetyltransferase 6A KAT6A 7994 NM_001099412 /// NM_001099413 /// NM_006766 /// XM_005273649 0003007 // heart morphogenesis // inferred from electronic annotation /// 0006323 // DNA packaging // traceable author statement /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006473 // protein acetylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from direct assay /// 0030099 // myeloid cell differentiation // inferred from direct assay /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035909 // aorta morphogenesis // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0090398 // cellular senescence // inferred from mutant phenotype 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0016407 // acetyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 19.47 280.66 0.91 0.39 0.48 -4.60
204150_at 204150_at NM_015136 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015136.1 /DEF=Homo sapiens KIAA0246 protein (KIAA0246), mRNA. /FEA=mRNA /GEN=KIAA0246 /PROD=KIAA0246 protein /DB_XREF=gi:12225239 /UG=Hs.301989 KIAA0246 protein /FL=gb:NM_015136.1 NM_015136 stabilin 1 STAB1 23166 NM_015136 /// XM_005264973 /// XM_005264974 /// XM_005264975 /// XM_006713065 /// XM_006713066 /// XR_427261 0006898 // receptor-mediated endocytosis // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007267 // cell-cell signaling // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from mutant phenotype /// 0042742 // defense response to bacterium // inferred from direct assay /// 0055114 // oxidation-reduction process // non-traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement 0005041 // low-density lipoprotein receptor activity // inferred from direct assay /// 0005044 // scavenger receptor activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // non-traceable author statement /// 0030169 // low-density lipoprotein particle binding // inferred from direct assay -42.23 414.51 -0.91 0.39 0.48 -4.60
200013_at 200013_at NM_000986 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000986.1 /DEF=Homo sapiens ribosomal protein L24 (RPL24), mRNA. /FEA=mRNA /GEN=RPL24 /PROD=ribosomal protein L24 /DB_XREF=gi:4506618 /UG=Hs.184582 ribosomal protein L24 /FL=gb:BC000690.1 gb:M94314.1 gb:NM_000986.1 NM_000986 ribosomal protein L24 RPL24 6152 NM_000986 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -146.03 2245.96 -0.91 0.39 0.48 -4.60
214902_x_at 214902_x_at AL080232 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL080232.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586A061 (from clone DKFZp586A061). /FEA=mRNA /DB_XREF=gi:5262725 /UG=Hs.220696 Homo sapiens mRNA; cDNA DKFZp586A061 (from clone DKFZp586A061) AL080232 LIM domain containing preferred translocation partner in lipoma LPP 4026 NM_001167671 /// NM_001167672 /// NM_005578 /// XM_005247444 /// XM_005247445 /// XM_005247446 /// XM_005247447 /// XM_005247448 /// XM_005247450 /// XM_005247451 /// XM_005247453 /// XM_006713637 0007155 // cell adhesion // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 15.05 78.15 0.91 0.39 0.48 -4.60
202503_s_at 202503_s_at NM_014736 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014736.1 /DEF=Homo sapiens KIAA0101 gene product (KIAA0101), mRNA. /FEA=mRNA /GEN=KIAA0101 /PROD=KIAA0101 gene product /DB_XREF=gi:7661905 /UG=Hs.81892 KIAA0101 gene product /FL=gb:D14657.1 gb:NM_014736.1 NM_014736 KIAA0101 KIAA0101 9768 NM_001029989 /// NM_014736 /// NR_109934 0006260 // DNA replication // inferred from direct assay /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0009411 // response to UV // inferred from direct assay /// 0019985 // translesion synthesis // inferred from mutant phenotype /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003682 // chromatin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 48.35 876.80 0.91 0.39 0.48 -4.60
209297_at 209297_at AF114488 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF114488.1 /DEF=Homo sapiens intersectin short isoform (ITSN) mRNA, complete cds. /FEA=mRNA /GEN=ITSN /PROD=intersectin short isoform /DB_XREF=gi:4808824 /UG=Hs.66392 intersectin 1 (SH3 domain protein) /FL=gb:AF064243.1 gb:AF114488.1 AF114488 intersectin 1 (SH3 domain protein) ITSN1 6453 NM_001001132 /// NM_003024 /// XM_005261026 /// XM_005261027 /// XM_005261031 /// XR_244289 0006897 // endocytosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043087 // regulation of GTPase activity // non-traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // non-traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048488 // synaptic vesicle endocytosis // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005905 // coated pit // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // non-traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019209 // kinase activator activity // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // inferred from physical interaction -24.15 234.07 -0.91 0.39 0.48 -4.60
211456_x_at 211456_x_at AF333388 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF333388.1 /DEF=Homo sapiens metallothionein 1H-like protein mRNA, complete cds. /FEA=mRNA /PROD=metallothionein 1H-like protein /DB_XREF=gi:13310411 /UG=Hs.326774 Homo sapiens metallothionein 1H-like protein mRNA, complete cds /FL=gb:AF333388.1 AF333388 metallothionein 1H-like 1 MT1HL1 645745 NM_001039954 /// NM_001276687 0046872 // metal ion binding // inferred from electronic annotation -316.65 2305.62 -0.91 0.39 0.48 -4.60
214626_s_at 214626_s_at AK026548 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026548.1 /DEF=Homo sapiens cDNA: FLJ22895 fis, clone KAT04940. /FEA=mRNA /DB_XREF=gi:10439429 /UG=Hs.76847 KIAA0088 protein /FL=gb:AF144074.1 AK026548 glucosidase, alpha; neutral AB GANAB 23193 NM_001278192 /// NM_001278193 /// NM_001278194 /// NM_014610 /// NM_198334 /// NM_198335 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0017177 // glucosidase II complex // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0033919 // glucan 1,3-alpha-glucosidase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 29.58 247.79 0.90 0.39 0.48 -4.60
212567_s_at 212567_s_at AL523310 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523310 /FEA=EST /DB_XREF=gi:12786803 /DB_XREF=est:AL523310 /CLONE=CS0DC001YN06 (3 prime) /UG=Hs.150580 putative translation initiation factor AL523310 microtubule-associated protein 4 MAP4 4134 NM_001134364 /// NM_001134365 /// NM_002375 /// NM_030884 /// NM_030885 /// XM_005265133 /// XM_005265134 /// XM_005265135 /// XM_005265138 /// XM_005265139 /// XM_005265147 /// XM_005265155 /// XM_005265157 /// XM_005265158 /// XM_005265159 /// XM_006713140 /// XM_006713141 /// XM_006713142 /// XM_006713143 /// XM_006713144 /// XM_006713145 /// XM_006713146 /// XM_006713147 /// XM_006713148 /// XM_006713149 /// XM_006713150 /// XM_006713151 /// XM_006713152 /// XM_006713153 /// XM_006713154 /// XM_006713155 /// XM_006713156 /// XM_006713157 /// XM_006713158 /// XM_006713159 /// XM_006713160 /// XM_006713161 /// XM_006713162 /// XM_006713163 0007052 // mitotic spindle organization // inferred from mutant phenotype /// 0051012 // microtubule sliding // inferred from mutant phenotype /// 0051294 // establishment of spindle orientation // inferred from genetic interaction /// 0051294 // establishment of spindle orientation // inferred from mutant phenotype /// 0051301 // cell division // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0015631 // tubulin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 14.43 107.11 0.90 0.39 0.48 -4.60
200599_s_at 200599_s_at NM_003299 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003299.1 /DEF=Homo sapiens tumor rejection antigen (gp96) 1 (TRA1), mRNA. /FEA=mRNA /GEN=TRA1 /PROD=tumor rejection antigen (gp96) 1 /DB_XREF=gi:4507676 /UG=Hs.82689 tumor rejection antigen (gp96) 1 /FL=gb:NM_003299.1 NM_003299 heat shock protein 90kDa beta (Grp94), member 1 /// microRNA 3652 HSP90B1 /// MIR3652 7184 /// 100500842 NM_003299 /// NR_037425 0001666 // response to hypoxia // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // non-traceable author statement /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031247 // actin rod assembly // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051208 // sequestering of calcium ion // non-traceable author statement /// 0071318 // cellular response to ATP // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from direct assay /// 0046790 // virion binding // inferred from physical interaction /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation -108.97 2172.09 -0.90 0.39 0.48 -4.60
209026_x_at 209026_x_at AF141349 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF141349.1 /DEF=Homo sapiens beta-tubulin mRNA, complete cds. /FEA=mRNA /PROD=beta-tubulin /DB_XREF=gi:4929137 /UG=Hs.179661 tubulin, beta polypeptide /FL=gb:BC000222.1 gb:BC002347.1 gb:BC001938.1 gb:AF070561.1 gb:AF070593.1 gb:AF070600.1 gb:AF141349.1 AF141349 tubulin, beta class I TUBB 203068 NM_001293212 /// NM_001293213 /// NM_001293214 /// NM_001293215 /// NM_001293216 /// NM_178014 /// NR_120608 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0009987 // cellular process // inferred from direct assay /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0042267 // natural killer cell mediated cytotoxicity // non-traceable author statement /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051297 // centrosome organization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement 0000242 // pericentriolar material // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0044297 // cell body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032794 // GTPase activating protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from direct assay 282.90 2339.20 0.90 0.39 0.48 -4.60
215089_s_at 215089_s_at AW409974 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW409974 /FEA=EST /DB_XREF=gi:6935515 /DB_XREF=est:fh03d12.y1 /CLONE=IMAGE:2961094 /UG=Hs.332750 Homo sapiens cDNA FLJ10100 fis, clone HEMBA1002469, moderately similar to DXS8237E PROTEIN AW409974 RNA binding motif protein 10 RBM10 8241 NM_001204466 /// NM_001204467 /// NM_001204468 /// NM_005676 /// NM_152856 /// XM_005272677 /// XM_005272678 /// XM_005272679 /// XM_006724563 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0034391 // regulation of smooth muscle cell apoptotic process // inferred from electronic annotation /// 0034393 // positive regulation of smooth muscle cell apoptotic process // inferred from electronic annotation /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 21.60 91.88 0.90 0.39 0.48 -4.60
216450_x_at 216450_x_at AK025862 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025862.1 /DEF=Homo sapiens cDNA: FLJ22209 fis, clone HRC01496. /FEA=mRNA /DB_XREF=gi:10438505 /UG=Hs.288528 Homo sapiens cDNA: FLJ22209 fis, clone HRC01496 AK025862 heat shock protein 90kDa beta (Grp94), member 1 HSP90B1 7184 NM_003299 0001666 // response to hypoxia // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // non-traceable author statement /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031247 // actin rod assembly // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051208 // sequestering of calcium ion // non-traceable author statement /// 0071318 // cellular response to ATP // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from direct assay /// 0046790 // virion binding // inferred from physical interaction /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation -29.27 300.46 -0.90 0.40 0.48 -4.60
208755_x_at 208755_x_at BF312331 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF312331 /FEA=EST /DB_XREF=gi:11260131 /DB_XREF=est:601898862F1 /CLONE=IMAGE:4128159 /UG=Hs.181307 H3 histone, family 3A /FL=gb:M11354.1 BF312331 H3 histone, family 3A /// H3 histone, family 3A, pseudogene 4 /// H3 histone, family 3B (H3.3B) H3F3A /// H3F3AP4 /// H3F3B 3020 /// 3021 /// 440926 NM_002107 /// NM_005324 /// NR_002315 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -89.87 2038.44 -0.90 0.40 0.48 -4.60
201177_s_at 201177_s_at NM_005499 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005499.1 /DEF=Homo sapiens SUMO-1 activating enzyme subunit 2 (UBA2), mRNA. /FEA=mRNA /GEN=UBA2 /PROD=SUMO-1 activating enzyme subunit 2 /DB_XREF=gi:4885648 /UG=Hs.4311 SUMO-1 activating enzyme subunit 2 /FL=gb:BC003153.1 gb:U35832.1 gb:AF090384.1 gb:AF079566.1 gb:AF110957.1 gb:NM_005499.1 gb:AL136905.1 NM_005499 ubiquitin-like modifier activating enzyme 2 UBA2 10054 NM_005499 /// XM_005258403 /// XM_005258404 /// XM_006722962 0006464 // cellular protein modification process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0016925 // protein sumoylation // traceable author statement /// 0019950 // SMT3-dependent protein catabolic process // not recorded /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0031510 // SUMO activating enzyme complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // traceable author statement /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019948 // SUMO activating enzyme activity // inferred from direct assay /// 0019948 // SUMO activating enzyme activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction -26.18 322.74 -0.90 0.40 0.48 -4.60
208959_s_at 208959_s_at BC005374 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005374.1 /DEF=Homo sapiens, Similar to RIKEN cDNA 1110001E24 gene, clone MGC:12490, mRNA, complete cds. /FEA=mRNA /PROD=Similar to RIKEN cDNA 1110001E24 gene /DB_XREF=gi:13529223 /UG=Hs.154023 KIAA0573 protein /FL=gb:BC005374.1 BC005374 endoplasmic reticulum protein 44 ERP44 23071 NM_015051 0006457 // protein folding // inferred from direct assay /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay /// 0009100 // glycoprotein metabolic process // inferred from direct assay /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0045454 // cell redox homeostasis // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 14.98 303.26 0.90 0.40 0.48 -4.60
216032_s_at 216032_s_at AF091085 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF091085.1 /DEF=Homo sapiens clone 638 unknown mRNA, complete sequence. /FEA=mRNA /PROD=unknown /DB_XREF=gi:3860007 /UG=Hs.169992 hypothetical 43.2 Kd protein AF091085 ERGIC and golgi 3 ERGIC3 51614 NM_015966 /// NM_198398 /// XM_006723804 /// XM_006723805 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -26.85 414.85 -0.90 0.40 0.48 -4.60
217794_at 217794_at NM_018457 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018457.1 /DEF=Homo sapiens DKFZp564J157 protein (DKFZP564J157), mRNA. /FEA=mRNA /GEN=DKFZP564J157 /PROD=DKFZp564J157 protein /DB_XREF=gi:8922156 /UG=Hs.63042 DKFZp564J157 protein /FL=gb:AF217517.1 gb:NM_018457.1 NM_018457 proline rich 13 PRR13 54458 NM_001005354 /// NM_001005355 /// NM_018457 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay 15.17 279.89 0.89 0.40 0.48 -4.60
200621_at 200621_at NM_004078 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004078.1 /DEF=Homo sapiens cysteine and glycine-rich protein 1 (CSRP1), mRNA. /FEA=mRNA /GEN=CSRP1 /PROD=cysteine and glycine-rich protein 1 /DB_XREF=gi:4758085 /UG=Hs.108080 cysteine and glycine-rich protein 1 /FL=gb:M33146.1 gb:NM_004078.1 NM_004078 cysteine and glycine-rich protein 1 CSRP1 1465 NM_001144773 /// NM_001193570 /// NM_001193571 /// NM_001193572 /// NM_004078 0005634 // nucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 38.57 648.04 0.89 0.40 0.48 -4.60
200944_s_at 200944_s_at NM_004965 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004965.1 /DEF=Homo sapiens high-mobility group (nonhistone chromosomal) protein 14 (HMG14), mRNA. /FEA=mRNA /GEN=HMG14 /PROD=high-mobility group (nonhistone chromosomal)protein 14 /DB_XREF=gi:4826757 /UG=Hs.251064 high-mobility group (nonhistone chromosomal) protein 14 /FL=gb:BC000075.1 gb:J02621.1 gb:NM_004965.1 NM_004965 high mobility group nucleosome binding domain 1 /// uncharacterized LOC101927733 HMGN1 /// LOC101927733 3150 /// 101927733 NM_004965 /// XR_242845 /// XR_247614 /// XR_252852 0000720 // pyrimidine dimer repair by nucleotide-excision repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from electronic annotation /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0010224 // response to UV-B // inferred from electronic annotation /// 0010225 // response to UV-C // inferred from electronic annotation /// 0032786 // positive regulation of DNA-templated transcription, elongation // traceable author statement /// 0040034 // regulation of development, heterochronic // inferred from electronic annotation /// 0048597 // post-embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0031492 // nucleosomal DNA binding // inferred from electronic annotation -49.55 1094.83 -0.89 0.40 0.48 -4.60
218831_s_at 218831_s_at NM_004107 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004107.1 /DEF=Homo sapiens Fc fragment of IgG, receptor, transporter, alpha (FCGRT), mRNA. /FEA=mRNA /GEN=FCGRT /PROD=Fc fragment of IgG, receptor, transporter,alpha /DB_XREF=gi:4758345 /UG=Hs.111903 Fc fragment of IgG, receptor, transporter, alpha /FL=gb:NM_004107.1 gb:U12255.1 NM_004107 Fc fragment of IgG, receptor, transporter, alpha FCGRT 2217 NM_001136019 /// NM_004107 /// XM_005258657 /// XM_006723086 0002416 // IgG immunoglobulin transcytosis in epithelial cells mediated by FcRn immunoglobulin receptor // non-traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0038094 // Fc-gamma receptor signaling pathway // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003823 // antigen binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019770 // IgG receptor activity // not recorded /// 0019864 // IgG binding // inferred from direct assay /// 0030881 // beta-2-microglobulin binding // not recorded -19.25 97.12 -0.89 0.40 0.48 -4.60
201055_s_at 201055_s_at NM_006805 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006805.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein A0 (HNRPA0), mRNA. /FEA=mRNA /GEN=HNRPA0 /PROD=heterogeneous nuclear ribonucleoprotein A0 /DB_XREF=gi:5803035 /UG=Hs.77492 heterogeneous nuclear ribonucleoprotein A0 /FL=gb:BC001008.1 gb:NM_006805.1 gb:U23803.1 NM_006805 heterogeneous nuclear ribonucleoprotein A0 HNRNPA0 10949 NM_006805 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from sequence or structural similarity /// 0070935 // 3'-UTR-mediated mRNA stabilization // inferred from sequence or structural similarity /// 0070935 // 3'-UTR-mediated mRNA stabilization // traceable author statement 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0017091 // AU-rich element binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 23.63 145.49 0.89 0.40 0.48 -4.60
218679_s_at 218679_s_at NM_016208 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016208.1 /DEF=Homo sapiens VPS28 protein (LOC51160), mRNA. /FEA=mRNA /GEN=LOC51160 /PROD=VPS28 protein /DB_XREF=gi:7705884 /UG=Hs.293441 VPS28 protein /FL=gb:AF316887.1 gb:AF182844.1 gb:NM_016208.1 NM_016208 vacuolar protein sorting 28 homolog (S. cerevisiae) VPS28 51160 NM_016208 /// NM_183057 /// XM_005272323 /// XM_005272324 /// XM_005272325 /// XM_006716577 /// XM_006716578 /// XM_006716579 /// XM_006716580 /// XM_006716581 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred by curator /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0075733 // intracellular transport of virus // traceable author statement 0000813 // ESCRT I complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -26.40 280.22 -0.89 0.40 0.49 -4.60
209100_at 209100_at BC001327 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001327.1 /DEF=Homo sapiens, interferon-related developmental regulator 2, clone MGC:5552, mRNA, complete cds. /FEA=mRNA /PROD=interferon-related developmental regulator 2 /DB_XREF=gi:12654958 /UG=Hs.315177 interferon-related developmental regulator 2 /FL=gb:BC001327.1 gb:BC001676.1 gb:NM_006764.1 BC001327 interferon-related developmental regulator 2 IFRD2 7866 NM_006764 0005634 // nucleus // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -14.75 250.10 -0.89 0.40 0.49 -4.60
215157_x_at 215157_x_at AI734929 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI734929 /FEA=EST /DB_XREF=gi:5056453 /DB_XREF=est:at14d04.x1 /CLONE=IMAGE:2355079 /UG=Hs.172182 poly(A)-binding protein, cytoplasmic 1 AI734929 poly(A) binding protein, cytoplasmic 1 PABPC1 26986 NM_002568 /// XM_005250861 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006378 // mRNA polyadenylation // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031047 // gene silencing by RNA // inferred from sequence or structural similarity /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // traceable author statement /// 0048255 // mRNA stabilization // traceable author statement /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // inferred from sequence or structural similarity /// 1900153 // positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from sequence or structural similarity /// 2000623 // negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from direct assay /// 0008143 // poly(A) binding // traceable author statement /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0008494 // translation activator activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -155.35 2219.95 -0.88 0.40 0.49 -4.60
202231_at 202231_at NM_006360 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006360.1 /DEF=Homo sapiens dendritic cell protein (GA17), mRNA. /FEA=mRNA /GEN=GA17 /PROD=dendritic cell protein /DB_XREF=gi:5453653 /UG=Hs.69469 dendritic cell protein /FL=gb:AF277183.1 gb:AF064603.1 gb:NM_006360.1 NM_006360 eukaryotic translation initiation factor 3, subunit M EIF3M 10480 NM_006360 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0002183 // cytoplasmic translational initiation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred by curator /// 0006446 // regulation of translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0005515 // protein binding // inferred from physical interaction 41.20 485.18 0.88 0.40 0.49 -4.60
213612_x_at 213612_x_at AI800419 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI800419 /FEA=EST /DB_XREF=gi:5365891 /DB_XREF=est:tj14b09.x1 /CLONE=IMAGE:2141465 /UG=Hs.218329 hypothetical protein AI800419 neuroblastoma breakpoint family, member 10 /// neuroblastoma breakpoint family, member 12 /// neuroblastoma breakpoint family, member 14 /// neuroblastoma breakpoint family, member 15 /// neuroblastoma breakpoint family, member 20 /// neuroblastoma breakpoint family, member 8 /// neuroblastoma breakpoint family, member 9 NBPF10 /// NBPF12 /// NBPF14 /// NBPF15 /// NBPF20 /// NBPF8 /// NBPF9 25832 /// 149013 /// 284565 /// 400818 /// 728841 /// 100132406 /// 100288142 NM_001037501 /// NM_001037675 /// NM_001039703 /// NM_001102663 /// NM_001170755 /// NM_001277444 /// NM_001278141 /// NM_001278267 /// NM_015383 /// NM_173638 /// NR_102404 /// NR_102405 /// XM_005245096 /// XM_005245097 /// XM_005277342 /// XM_005277343 /// XM_005277344 /// XM_005277345 /// XM_005277346 /// XM_005277347 /// XM_006710872 /// XM_006711103 /// XM_006711104 /// XM_006711179 /// XM_006711180 /// XM_006711181 /// XM_006711182 /// XM_006711265 /// XM_006711317 /// XR_254328 /// XR_426769 0005737 // cytoplasm // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay -70.57 832.91 -0.88 0.40 0.49 -4.60
201705_at 201705_at NM_002811 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002811.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog) (PSMD7), mRNA. /FEA=mRNA /GEN=PSMD7 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 7 (Mov34 homolog) /DB_XREF=gi:4506230 /UG=Hs.155543 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog) /FL=gb:NM_002811.1 gb:D50063.1 NM_002811 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 PSMD7 5713 NM_002811 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 40.55 358.23 0.88 0.41 0.49 -4.60
210156_s_at 210156_s_at D25547 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D25547.1 /DEF=Homo sapiens mRNA for PIMT isozyme I, complete cds. /FEA=mRNA /PROD=PIMT isozyme I /DB_XREF=gi:1332402 /UG=Hs.79137 protein-L-isoaspartate (D-aspartate) O-methyltransferase /FL=gb:D25547.1 D25547 protein-L-isoaspartate (D-aspartate) O-methyltransferase PCMT1 5110 NM_001252049 /// NM_001252050 /// NM_001252051 /// NM_001252052 /// NM_001252053 /// NM_005389 0006464 // cellular protein modification process // inferred from electronic annotation /// 0006479 // protein methylation // traceable author statement /// 0030091 // protein repair // traceable author statement /// 0032259 // methylation // inferred from electronic annotation /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from electronic annotation /// 0046500 // S-adenosylmethionine metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // traceable author statement /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -24.75 355.95 -0.88 0.41 0.49 -4.60
217708_x_at 217708_x_at AI734156 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI734156 /FEA=EST /DB_XREF=gi:5055269 /DB_XREF=est:nc79d04.y5 /CLONE=IMAGE:783559 /UG=Hs.172895 ESTs AI734156 -13.82 25.61 -0.88 0.41 0.49 -4.60
201272_at 201272_at NM_001628 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001628.1 /DEF=Homo sapiens aldo-keto reductase family 1, member B1 (aldose reductase) (AKR1B1), mRNA. /FEA=mRNA /GEN=AKR1B1 /PROD=aldo-keto reductase family 1, member B1 (aldosereductase) /DB_XREF=gi:4502048 /UG=Hs.75313 aldo-keto reductase family 1, member B1 (aldose reductase) /FL=gb:BC000260.1 gb:BC005387.1 gb:J04795.1 gb:J05017.1 gb:J05474.1 gb:M34720.1 gb:NM_001628.1 NM_001628 aldo-keto reductase family 1, member B1 (aldose reductase) AKR1B1 231 NM_001628 /// XM_005250234 0005975 // carbohydrate metabolic process // traceable author statement /// 0006700 // C21-steroid hormone biosynthetic process // traceable author statement /// 0006950 // response to stress // traceable author statement /// 0008202 // steroid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0044597 // daunorubicin metabolic process // inferred from mutant phenotype /// 0044598 // doxorubicin metabolic process // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004032 // alditol:NADP+ 1-oxidoreductase activity // inferred from electronic annotation /// 0004033 // aldo-keto reductase (NADP) activity // traceable author statement /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043795 // glyceraldehyde oxidoreductase activity // inferred from direct assay -26.00 618.45 -0.88 0.41 0.49 -4.60
216282_x_at 216282_x_at AJ224143 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ224143.1 /DEF=Homo sapiens mRNA variant alfa for RNA polymerase II subunit 3. /FEA=mRNA /GEN=RPB3 /PROD=RNA polymerase II subunit /DB_XREF=gi:2920708 /UG=Hs.79402 polymerase (RNA) II (DNA directed) polypeptide C (33kD) AJ224143 polymerase (RNA) II (DNA directed) polypeptide C, 33kDa POLR2C 5432 NM_002694 /// NM_032940 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0001055 // RNA polymerase II activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation -13.33 66.34 -0.88 0.41 0.49 -4.60
215091_s_at 215091_s_at BE542815 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE542815 /FEA=EST /DB_XREF=gi:9771460 /DB_XREF=est:601067630F1 /CLONE=IMAGE:3453846 /UG=Hs.75113 general transcription factor IIIA BE542815 general transcription factor IIIA GTF3A 2971 NM_002097 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0009303 // rRNA transcription // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 34.40 327.70 0.88 0.41 0.49 -4.60
219221_at 219221_at NM_024724 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024724.1 /DEF=Homo sapiens hypothetical protein FLJ22332 (FLJ22332), mRNA. /FEA=mRNA /GEN=FLJ22332 /PROD=hypothetical protein FLJ22332 /DB_XREF=gi:13376033 /UG=Hs.111092 hypothetical protein FLJ22332 /FL=gb:NM_024724.1 NM_024724 zinc finger and BTB domain containing 38 ZBTB38 253461 NM_001080412 /// NM_152535 /// XM_005247255 /// XM_005247256 /// XM_005247257 /// XM_005247258 /// XM_005247261 /// XM_005247262 /// XM_005247263 /// XM_006713559 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0072562 // blood microparticle // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008327 // methyl-CpG binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -20.73 190.41 -0.87 0.41 0.49 -4.60
209876_at 209876_at AF124491 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF124491.1 /DEF=Homo sapiens ARF GTPase-activating protein GIT2 (KIAA0148) mRNA, complete cds. /FEA=mRNA /GEN=KIAA0148 /PROD=ARF GTPase-activating protein GIT2 /DB_XREF=gi:4691727 /UG=Hs.57734 G protein-coupled receptor kinase-interactor 2 /FL=gb:AF124491.1 AF124491 G protein-coupled receptor kinase interacting ArfGAP 2 GIT2 9815 NM_001135213 /// NM_001135214 /// NM_014776 /// NM_057169 /// NM_057170 /// NM_139201 /// XM_005253997 /// XM_005254000 /// XM_006719707 /// XM_006719708 /// XM_006719709 /// XM_006719710 /// XM_006719711 /// XM_006719712 /// XM_006719713 /// XM_006719714 0006915 // apoptotic process // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045095 // keratin filament // inferred from direct assay /// 0045179 // apical cortex // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 14.85 42.05 0.87 0.41 0.49 -4.60
202202_s_at 202202_s_at NM_002290 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002290.2 /DEF=Homo sapiens laminin, alpha 4 (LAMA4), mRNA. /FEA=mRNA /GEN=LAMA4 /PROD=laminin, alpha 4 precursor /DB_XREF=gi:9845494 /UG=Hs.78672 laminin, alpha 4 /FL=gb:NM_002290.2 NM_002290 laminin, alpha 4 LAMA4 3910 NM_001105206 /// NM_001105207 /// NM_001105208 /// NM_001105209 /// NM_002290 /// XM_005266983 /// XM_005266984 /// XM_006715480 /// XM_006715481 0001568 // blood vessel development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007172 // signal complex assembly // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005605 // basal lamina // traceable author statement /// 0005606 // laminin-1 complex // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation -15.43 553.46 -0.87 0.41 0.49 -4.60
200720_s_at 200720_s_at AL532341 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL532341 /FEA=EST /DB_XREF=gi:12795834 /DB_XREF=est:AL532341 /CLONE=CS0DM014YJ21 (5 prime) /UG=Hs.153961 ARP1 (actin-related protein 1, yeast) homolog A (centractin alpha) /FL=gb:BC000693.1 gb:NM_005736.2 AL532341 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ACTR1A 10121 NM_005736 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0016192 // vesicle-mediated transport // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005869 // dynactin complex // traceable author statement /// 0005875 // microtubule associated complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation -16.42 281.61 -0.87 0.41 0.49 -4.60
212749_s_at 212749_s_at AI096477 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI096477 /FEA=EST /DB_XREF=gi:3445971 /DB_XREF=est:qa03c06.x1 /CLONE=IMAGE:1685674 /UG=Hs.48297 DKFZP586C1620 protein AI096477 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase RCHY1 25898 NM_001008925 /// NM_001009922 /// NM_001278536 /// NM_001278537 /// NM_001278538 /// NM_001278539 /// NM_015436 /// NR_037913 /// NR_037914 /// NR_103723 /// NR_103724 /// NR_103725 /// XM_006714174 0016567 // protein ubiquitination // inferred from direct assay /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0002039 // p53 binding // inferred from physical interaction /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -14.90 155.45 -0.87 0.41 0.50 -4.60
200750_s_at 200750_s_at AF054183 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF054183.1 /DEF=Homo sapiens GTP binding protein mRNA, complete cds. /FEA=mRNA /PROD=GTP binding protein /DB_XREF=gi:4092053 /UG=Hs.10842 RAN, member RAS oncogene family /FL=gb:BC000852.1 gb:BC004272.1 gb:M31469.1 gb:AF052578.1 gb:AF054183.1 gb:NM_006325.2 AF054183 RAN, member RAS oncogene family RAN 5901 NM_006325 /// XM_005253592 0000055 // ribosomal large subunit export from nucleus // inferred from mutant phenotype /// 0000056 // ribosomal small subunit export from nucleus // inferred from mutant phenotype /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006259 // DNA metabolic process // traceable author statement /// 0006405 // RNA export from nucleus // non-traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // traceable author statement /// 0007067 // mitotic nuclear division // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034629 // cellular protein complex localization // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0075733 // intracellular transport of virus // traceable author statement 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // traceable author statement /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050681 // androgen receptor binding // non-traceable author statement 70.05 1189.72 0.87 0.41 0.50 -4.60
221482_s_at 221482_s_at BC003418 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003418.1 /DEF=Homo sapiens, cyclic AMP phosphoprotein, 19 kD, clone MGC:5468, mRNA, complete cds. /FEA=mRNA /PROD=cyclic AMP phosphoprotein, 19 kD /DB_XREF=gi:13097335 /UG=Hs.7351 cyclic AMP phosphoprotein, 19 kD /FL=gb:BC003418.1 gb:AF084555.1 BC003418 cAMP-regulated phosphoprotein, 19kDa ARPP19 10776 NM_006628 /// XM_005254132 /// XM_005254133 /// XM_005254134 /// XM_005254135 0000086 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from sequence or structural similarity /// 0045722 // positive regulation of gluconeogenesis // inferred from direct assay /// 0046326 // positive regulation of glucose import // non-traceable author statement /// 0050790 // regulation of catalytic activity // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0008601 // protein phosphatase type 2A regulator activity // inferred from sequence or structural similarity /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0019212 // phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0051721 // protein phosphatase 2A binding // inferred from sequence or structural similarity -23.55 184.00 -0.87 0.41 0.50 -4.60
218350_s_at 218350_s_at NM_015895 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015895.1 /DEF=Homo sapiens geminin (LOC51053), mRNA. /FEA=mRNA /GEN=LOC51053 /PROD=geminin /DB_XREF=gi:7705681 /UG=Hs.234896 geminin /FL=gb:AF067855.1 gb:NM_015895.1 NM_015895 geminin, DNA replication inhibitor GMNN 51053 NM_001251989 /// NM_001251990 /// NM_001251991 /// NM_015895 /// XM_005249159 0000278 // mitotic cell cycle // traceable author statement /// 0006275 // regulation of DNA replication // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from direct assay /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0070491 // repressing transcription factor binding // inferred from electronic annotation 21.27 151.64 0.87 0.41 0.50 -4.60
205032_at 205032_at NM_002203 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002203.2 /DEF=Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), mRNA. /FEA=mRNA /GEN=ITGA2 /PROD=integrin alpha 2 precursor /DB_XREF=gi:6006008 /UG=Hs.271986 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) /FL=gb:NM_002203.2 NM_002203 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) ITGA2 3673 NM_002203 /// NR_073103 /// NR_073104 /// NR_073105 /// NR_073106 /// NR_073107 0001666 // response to hypoxia // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0002687 // positive regulation of leukocyte migration // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0006929 // substrate-dependent cell migration // inferred from mutant phenotype /// 0006971 // hypotonic response // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007160 // cell-matrix adhesion // traceable author statement /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0009887 // organ morphogenesis // traceable author statement /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0010694 // positive regulation of alkaline phosphatase activity // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014075 // response to amine // inferred from electronic annotation /// 0014850 // response to muscle activity // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030879 // mammary gland development // inferred from electronic annotation /// 0031346 // positive regulation of cell projection organization // inferred from electronic annotation /// 0031589 // cell-substrate adhesion // inferred from mutant phenotype /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0033343 // positive regulation of collagen binding // inferred from electronic annotation /// 0033591 // response to L-ascorbic acid // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // inferred from mutant phenotype /// 0038065 // collagen-activated signaling pathway // inferred from mutant phenotype /// 0042060 // wound healing // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0045184 // establishment of protein localization // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0051971 // positive regulation of transmission of nerve impulse // inferred from electronic annotation /// 0060100 // positive regulation of phagocytosis, engulfment // inferred from electronic annotation /// 0070365 // hepatocyte differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0008305 // integrin complex // inferred from electronic annotation /// 0009279 // cell outer membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0001618 // virus receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // traceable author statement /// 0032403 // protein complex binding // inferred from electronic annotation /// 0038064 // collagen receptor activity // inferred from mutant phenotype /// 0043236 // laminin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 15.43 125.21 0.87 0.41 0.50 -4.60
202483_s_at 202483_s_at NM_002882 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002882.2 /DEF=Homo sapiens RAN binding protein 1 (RANBP1), mRNA. /FEA=mRNA /GEN=RANBP1 /PROD=RAN binding protein 1 /DB_XREF=gi:6382077 /UG=Hs.24763 RAN binding protein 1 /FL=gb:D38076.1 gb:NM_002882.2 NM_002882 RAN binding protein 1 RANBP1 5902 NM_001278639 /// NM_001278640 /// NM_001278641 /// NM_002882 /// XM_006724287 /// XM_006724288 0007051 // spindle organization // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0016032 // viral process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0046604 // positive regulation of mitotic centrosome separation // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // traceable author statement /// 0005635 // nuclear envelope // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from electronic annotation 0005092 // GDP-dissociation inhibitor activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008536 // Ran GTPase binding // traceable author statement -37.85 479.18 -0.87 0.41 0.50 -4.60
200876_s_at 200876_s_at NM_002793 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002793.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, beta type, 1 (PSMB1), mRNA. /FEA=mRNA /GEN=PSMB1 /PROD=proteasome (prosome, macropain) subunit, betatype, 1 /DB_XREF=gi:4506192 /UG=Hs.75748 proteasome (prosome, macropain) subunit, beta type, 1 /FL=gb:BC000508.1 gb:NM_002793.1 NM_002793 proteasome (prosome, macropain) subunit, beta type, 1 PSMB1 5689 NM_002793 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -53.27 867.11 -0.86 0.42 0.50 -4.60
210266_s_at 210266_s_at AF220137 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF220137.1 /DEF=Homo sapiens tripartite motif protein TRIM33 beta mRNA, complete cds; alternatively spliced. /FEA=mRNA /PROD=tripartite motif protein TRIM33 beta /DB_XREF=gi:12407442 /UG=Hs.287414 transcriptional intermediary factor 1 gamma /FL=gb:AF220137.1 AF220137 tripartite motif containing 33 TRIM33 51592 NM_015906 /// NM_033020 /// XM_005270936 /// XM_005270937 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030514 // negative regulation of BMP signaling pathway // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from physical interaction /// 0070412 // R-SMAD binding // inferred from physical interaction 17.28 193.01 0.86 0.42 0.50 -4.60
201347_x_at 201347_x_at NM_012203 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012203.1 /DEF=Homo sapiens glyoxylate reductasehydroxypyruvate reductase (GRHPR), mRNA. /FEA=mRNA /GEN=GRHPR /PROD=glyoxylate reductasehydroxypyruvate reductase /DB_XREF=gi:6912395 /UG=Hs.155742 glyoxylate reductasehydroxypyruvate reductase /FL=gb:AF113215.1 gb:BC000605.1 gb:BC003131.1 gb:AF146018.1 gb:AF113251.1 gb:AF134895.1 gb:NM_012203.1 NM_012203 glyoxylate reductase/hydroxypyruvate reductase GRHPR 9380 NM_012203 /// XM_005251631 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0007588 // excretion // inferred from mutant phenotype /// 0008152 // metabolic process // non-traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043648 // dicarboxylic acid metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046487 // glyoxylate metabolic process // traceable author statement /// 0051259 // protein oligomerization // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0008465 // glycerate dehydrogenase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016618 // hydroxypyruvate reductase activity // inferred from direct assay /// 0030267 // glyoxylate reductase (NADP) activity // inferred from direct assay /// 0030267 // glyoxylate reductase (NADP) activity // non-traceable author statement /// 0031406 // carboxylic acid binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0048037 // cofactor binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation /// 0051287 // NAD binding // traceable author statement /// 0070402 // NADPH binding // inferred from direct assay 13.05 211.88 0.86 0.42 0.50 -4.60
55081_at 55081_at W46406 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. W46406:zc31c10.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-323922 /clone_end=3' /gb=W46406 /gi=1331036 /ug=Hs.8535 /len=568 W46406 MICAL-like 1 MICALL1 85377 NM_033386 /// XM_005261791 /// XM_005261792 /// XM_006724345 0006612 // protein targeting to membrane // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0032456 // endocytic recycling // inferred from electronic annotation /// 0032458 // slow endocytic recycling // inferred from mutant phenotype /// 0036010 // protein localization to endosome // inferred from mutant phenotype /// 0097320 // membrane tubulation // inferred from direct assay /// 1990126 // retrograde transport, endosome to plasma membrane // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070300 // phosphatidic acid binding // inferred from direct assay 15.50 159.97 0.86 0.42 0.50 -4.60
202096_s_at 202096_s_at NM_000714 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000714.2 /DEF=Homo sapiens benzodiazapine receptor (peripheral) (BZRP), nuclear gene encoding mitochondrial protein, transcript variant PBR, mRNA. /FEA=mRNA /GEN=BZRP /PROD=peripheral benzodiazapine receptor /DB_XREF=gi:6382068 /UG=Hs.202 benzodiazapine receptor (peripheral) /FL=gb:BC001110.1 gb:M36035.1 gb:NM_000714.2 NM_000714 translocator protein (18kDa) TSPO 706 NM_000714 /// NM_001256530 /// NM_001256531 /// NM_007311 /// NR_046308 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // traceable author statement /// 0006821 // chloride transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0008202 // steroid metabolic process // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008347 // glial cell migration // inferred from electronic annotation /// 0010042 // response to manganese ion // inferred from electronic annotation /// 0010266 // response to vitamin B1 // inferred from electronic annotation /// 0010940 // positive regulation of necrotic cell death // inferred from electronic annotation /// 0014012 // peripheral nervous system axon regeneration // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0032374 // regulation of cholesterol transport // traceable author statement /// 0032570 // response to progesterone // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation /// 0051901 // positive regulation of mitochondrial depolarization // inferred from electronic annotation /// 0051928 // positive regulation of calcium ion transport // inferred from electronic annotation /// 0060242 // contact inhibition // inferred from electronic annotation /// 0060252 // positive regulation of glial cell proliferation // inferred from electronic annotation /// 0060253 // negative regulation of glial cell proliferation // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071294 // cellular response to zinc ion // inferred from electronic annotation /// 0071476 // cellular hypotonic response // inferred from electronic annotation /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005497 // androgen binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008503 // benzodiazepine receptor activity // inferred from electronic annotation /// 0015485 // cholesterol binding // traceable author statement 29.20 695.55 0.86 0.42 0.50 -4.60
201419_at 201419_at NM_004656 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004656.1 /DEF=Homo sapiens BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) (BAP1), mRNA. /FEA=mRNA /GEN=BAP1 /PROD=BRCA1 associated protein-1 (ubiquitincarboxy-terminal hydrolase) /DB_XREF=gi:4757835 /UG=Hs.106674 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) /FL=gb:BC001596.1 gb:AF045581.1 gb:NM_004656.1 NM_004656 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) BAP1 8314 NM_004656 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0006464 // cellular protein modification process // non-traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0035520 // monoubiquitinated protein deubiquitination // inferred from direct assay /// 0035522 // monoubiquitinated histone H2A deubiquitination // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0071108 // protein K48-linked deubiquitination // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0035517 // PR-DUB complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003682 // chromatin binding // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // non-traceable author statement /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -12.85 160.82 -0.86 0.42 0.50 -4.60
203712_at 203712_at NM_014878 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014878.1 /DEF=Homo sapiens KIAA0020 gene product (KIAA0020), mRNA. /FEA=mRNA /GEN=KIAA0020 /PROD=KIAA0020 gene product /DB_XREF=gi:7661865 /UG=Hs.2471 KIAA0020 gene product /FL=gb:D13645.1 gb:NM_014878.1 NM_014878 KIAA0020 KIAA0020 9933 NM_001031691 /// NM_014878 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -17.77 293.41 -0.86 0.42 0.50 -4.60
214937_x_at 214937_x_at AI924817 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI924817 /FEA=EST /DB_XREF=gi:5660781 /DB_XREF=est:wn23c11.x1 /CLONE=IMAGE:2446292 /UG=Hs.75737 pericentriolar material 1 AI924817 pericentriolar material 1 PCM1 5108 NM_006197 /// XM_005273509 /// XM_005273512 /// XM_005273519 /// XM_005273520 /// XM_005273521 /// XM_006716336 /// XM_006716337 /// XM_006716338 /// XM_006716339 /// XM_006716340 /// XM_006716341 /// XM_006716342 /// XM_006716343 /// XM_006716344 /// XM_006716345 /// XM_006716346 /// XM_006716347 /// XM_006716348 /// XM_006716349 /// XM_006716350 /// XR_428310 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000165 // MAPK cascade // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001838 // embryonic epithelial tube formation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007158 // neuron cell-cell adhesion // inferred from electronic annotation /// 0007158 // neuron cell-cell adhesion // inferred from mutant phenotype /// 0007165 // signal transduction // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007497 // posterior midgut development // traceable author statement /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014042 // positive regulation of neuron maturation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0022027 // interkinetic nuclear migration // inferred from sequence or structural similarity /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from direct assay /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031122 // cytoplasmic microtubule organization // inferred from mutant phenotype /// 0033619 // membrane protein proteolysis // inferred from direct assay /// 0033630 // positive regulation of cell adhesion mediated by integrin // inferred from direct assay /// 0034453 // microtubule anchoring // inferred from sequence or structural similarity /// 0034454 // microtubule anchoring at centrosome // inferred from electronic annotation /// 0035735 // intraciliary transport involved in cilium morphogenesis // inferred from mutant phenotype /// 0035799 // ureter maturation // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0042493 // response to drug // inferred from electronic annotation /// 0042551 // neuron maturation // inferred from electronic annotation /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // inferred from sequence or structural similarity /// 0048484 // enteric nervous system development // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // inferred from sequence or structural similarity /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060384 // innervation // inferred from electronic annotation /// 0061146 // Peyer's patch morphogenesis // inferred from electronic annotation /// 0061146 // Peyer's patch morphogenesis // inferred from sequence or structural similarity /// 0071300 // cellular response to retinoic acid // inferred from mutant phenotype /// 0071539 // protein localization to centrosome // inferred from sequence or structural similarity /// 0072300 // positive regulation of metanephric glomerulus development // inferred from electronic annotation /// 0072300 // positive regulation of metanephric glomerulus development // inferred from sequence or structural similarity /// 0090316 // positive regulation of intracellular protein transport // inferred from mutant phenotype /// 0097021 // lymphocyte migration into lymphoid organs // inferred from sequence or structural similarity /// 0097150 // neuronal stem cell maintenance // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from mutant phenotype /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // traceable author statement 0000242 // pericentriolar material // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0010008 // endosome membrane // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031513 // nonmotile primary cilium // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0034451 // centriolar satellite // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from sequence or structural similarity -14.38 194.26 -0.85 0.42 0.50 -4.60
201398_s_at 201398_s_at BC000687 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000687.1 /DEF=Homo sapiens, translocating chain-associating membrane protein, clone MGC:784, mRNA, complete cds. /FEA=mRNA /PROD=translocating chain-associating membraneprotein /DB_XREF=gi:12653796 /UG=Hs.4147 translocating chain-associating membrane protein /FL=gb:BC000687.1 gb:NM_014294.1 BC000687 translocation associated membrane protein 1 TRAM1 23471 NM_014294 0006412 // translation // traceable author statement /// 0006613 // cotranslational protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -48.98 716.91 -0.85 0.42 0.50 -4.60
201027_s_at 201027_s_at NM_015904 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015904.1 /DEF=Homo sapiens KIAA0741 gene product (IF2), mRNA. /FEA=mRNA /GEN=IF2 /PROD=translation initiation factor IF2 /DB_XREF=gi:7706231 /UG=Hs.158688 KIAA0741 gene product /FL=gb:AB018284.1 gb:AF078035.1 gb:NM_015904.1 NM_015904 eukaryotic translation initiation factor 5B EIF5B 9669 NM_015904 /// XM_005264075 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0006446 // regulation of translational initiation // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 13.70 169.72 0.85 0.42 0.50 -4.60
218826_at 218826_at NM_017515 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017515.1 /DEF=Homo sapiens novel protein (HSNOV1), mRNA. /FEA=mRNA /GEN=HSNOV1 /PROD=novel protein /DB_XREF=gi:13435132 /UG=Hs.9711 novel protein /FL=gb:NM_017515.1 NM_017515 solute carrier family 35, member F2 SLC35F2 54733 NM_017515 /// XM_005271598 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 14.78 358.91 0.85 0.42 0.50 -4.60
201831_s_at 201831_s_at BE875592 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE875592 /FEA=EST /DB_XREF=gi:10324368 /DB_XREF=est:601487031F1 /CLONE=IMAGE:3889710 /UG=Hs.325948 vesicle docking protein p115 /FL=gb:D86326.1 gb:NM_003715.1 BE875592 USO1 vesicle transport factor USO1 8615 NM_001290049 /// NM_003715 /// XM_006714395 /// XM_006714396 /// XM_006714397 0000278 // mitotic cell cycle // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0045056 // transcytosis // not recorded /// 0048193 // Golgi vesicle transport // inferred from electronic annotation /// 0048211 // Golgi vesicle docking // not recorded /// 0048280 // vesicle fusion with Golgi apparatus // inferred from electronic annotation /// 0061025 // membrane fusion // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005795 // Golgi stack // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded /// 0044822 // poly(A) RNA binding // inferred from direct assay -28.00 237.72 -0.85 0.42 0.51 -4.60
217792_at 217792_at NM_014426 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014426.1 /DEF=Homo sapiens sorting nexin 5 (SNX5), mRNA. /FEA=mRNA /GEN=SNX5 /PROD=sorting nexin 5 /DB_XREF=gi:7657598 /UG=Hs.13794 sorting nexin 5 /FL=gb:BC000100.1 gb:AF121855.1 gb:NM_014426.1 NM_014426 sorting nexin 5 SNX5 27131 NM_001282454 /// NM_014426 /// NM_152227 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006907 // pinocytosis // inferred from direct assay /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001891 // phagocytic cup // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031313 // extrinsic component of endosome membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0070685 // macropinocytic cup // inferred from direct assay 0008289 // lipid binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from direct assay /// 0035091 // phosphatidylinositol binding // inferred from sequence or structural similarity 15.50 184.40 0.85 0.42 0.51 -4.60
201509_at 201509_at NM_006899 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006899.1 /DEF=Homo sapiens isocitrate dehydrogenase 3 (NAD+) beta (IDH3B), mRNA. /FEA=mRNA /GEN=IDH3B /PROD=isocitrate dehydrogenase 3 (NAD+) beta /DB_XREF=gi:5901981 /UG=Hs.155410 isocitrate dehydrogenase 3 (NAD+) beta /FL=gb:BC001960.1 gb:U49283.1 gb:NM_006899.1 NM_006899 isocitrate dehydrogenase 3 (NAD+) beta IDH3B 3420 NM_001258384 /// NM_006899 /// NM_174855 /// NM_174856 /// XM_005260716 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006102 // isocitrate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006734 // NADH metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 12.50 75.80 0.85 0.42 0.51 -4.60
210011_s_at 210011_s_at BC000527 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC000527.1 /DEF=Homo sapiens, Similar to Ewing sarcoma breakpoint region 1, clone MGC:8607, mRNA, complete cds. /FEA=mRNA /PROD=Similar to Ewing sarcoma breakpoint region 1 /DB_XREF=gi:12653510 /UG=Hs.129953 Ewing sarcoma breakpoint region 1 /FL=gb:BC000527.1 BC000527 EWS RNA-binding protein 1 EWSR1 2130 NM_001163285 /// NM_001163286 /// NM_001163287 /// NM_005243 /// NM_013986 /// XM_005261389 /// XM_005261390 /// XM_006724166 /// XM_006724167 /// XR_430403 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -18.27 167.69 -0.85 0.42 0.51 -4.60
200872_at 200872_at NM_002966 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002966.1 /DEF=Homo sapiens S100 calcium-binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11)) (S100A10), mRNA. /FEA=mRNA /GEN=S100A10 /PROD=S100 calcium-binding protein A10 /DB_XREF=gi:4506760 /UG=Hs.119301 S100 calcium-binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11)) /FL=gb:M81457.1 gb:M38591.1 gb:NM_002966.1 NM_002966 S100 calcium binding protein A10 S100A10 6281 NM_002966 0001765 // membrane raft assembly // inferred from direct assay /// 0006900 // membrane budding // inferred from direct assay /// 0032855 // positive regulation of Rac GTPase activity // inferred from mutant phenotype /// 0051099 // positive regulation of binding // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0051894 // positive regulation of focal adhesion assembly // inferred from mutant phenotype /// 0071229 // cellular response to acid // inferred from electronic annotation /// 0090002 // establishment of protein localization to plasma membrane // inferred from direct assay /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from mutant phenotype 0019897 // extrinsic component of plasma membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044325 // ion channel binding // inferred from physical interaction 44.97 1333.64 0.85 0.42 0.51 -4.60
215236_s_at 215236_s_at AV721177 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV721177 /FEA=EST /DB_XREF=gi:10818329 /DB_XREF=est:AV721177 /CLONE=HTBAKF08 /UG=Hs.7885 phosphatidylinositol binding clathrin assembly protein AV721177 phosphatidylinositol binding clathrin assembly protein PICALM 8301 NM_001008660 /// NM_001206946 /// NM_001206947 /// NM_007166 /// XM_005274322 /// XM_005274323 /// XM_005274324 /// XM_005274325 /// XM_005274326 /// XM_005274327 /// XM_005274328 /// XM_005274329 /// XM_005274330 /// XM_005274331 /// XM_005274332 /// XM_005274333 /// XM_005274334 /// XM_005274335 /// XM_005274336 /// XM_005274337 /// XM_005274338 /// XM_005274340 /// XM_006718699 /// XM_006718700 /// XM_006718701 /// XM_006718702 0006461 // protein complex assembly // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0016188 // synaptic vesicle maturation // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016197 // endosomal transport // inferred from mutant phenotype /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from mutant phenotype /// 0031623 // receptor internalization // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from direct assay /// 0035459 // cargo loading into vesicle // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0048261 // negative regulation of receptor-mediated endocytosis // inferred from direct assay /// 0048268 // clathrin coat assembly // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // inferred from mutant phenotype /// 0072583 // clathrin-mediated endocytosis // inferred from mutant phenotype /// 0097459 // iron ion import into cell // inferred from mutant phenotype /// 1901216 // positive regulation of neuron death // inferred from mutant phenotype /// 1902004 // positive regulation of beta-amyloid formation // inferred from mutant phenotype /// 1902959 // regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process // inferred from mutant phenotype /// 1902961 // positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process // inferred from sequence or structural similarity /// 1902963 // negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005905 // coated pit // inferred from direct assay /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // inferred from direct assay /// 0030132 // clathrin coat of coated pit // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from sequence or structural similarity /// 0042734 // presynaptic membrane // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0097418 // neurofibrillary tangle // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // 1-phosphatidylinositol binding // inferred from sequence or structural similarity /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // inferred from physical interaction /// 0030276 // clathrin binding // inferred from sequence or structural similarity /// 0032050 // clathrin heavy chain binding // inferred from direct assay /// 0035615 // clathrin adaptor activity // inferred from mutant phenotype -26.47 255.46 -0.84 0.42 0.51 -4.60
218576_s_at 218576_s_at NM_007240 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007240.1 /DEF=Homo sapiens dual specificity phosphatase 12 (DUSP12), mRNA. /FEA=mRNA /GEN=DUSP12 /PROD=dual specificity phosphatase 12 /DB_XREF=gi:6005955 /UG=Hs.44229 dual specificity phosphatase 12 /FL=gb:AF119226.1 gb:NM_007240.1 NM_007240 dual specificity phosphatase 12 DUSP12 11266 NM_007240 /// XM_005244862 0006464 // cellular protein modification process // traceable author statement /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0033133 // positive regulation of glucokinase activity // not recorded /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0008270 // zinc ion binding // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 15.05 101.58 0.84 0.43 0.51 -4.60
212952_at 212952_at AA910371 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA910371 /FEA=EST /DB_XREF=gi:3049661 /DB_XREF=est:ok83h10.s1 /CLONE=IMAGE:1520611 /UG=Hs.16488 calreticulin AA910371 CTC-425F1.4 -135.63 468.16 -0.84 0.43 0.51 -4.60
208749_x_at 208749_x_at AF085357 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF085357.1 /DEF=Homo sapiens flotillin mRNA, complete cds. /FEA=mRNA /PROD=flotillin /DB_XREF=gi:5114048 /UG=Hs.179986 flotillin 1 /FL=gb:BC001146.1 gb:AF085357.1 gb:AF089750.2 gb:NM_005803.2 AF085357 flotillin 1 FLOT1 10211 NM_005803 /// XM_005248780 /// XM_005248781 /// XM_005272759 /// XM_005272760 /// XM_005274909 /// XM_005274910 /// XM_005275335 /// XM_005275336 /// XM_005275502 /// XM_005275503 /// XM_006714947 /// XM_006725465 /// XM_006725672 /// XM_006725971 /// XM_006726072 0007409 // axonogenesis // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // inferred from mutant phenotype /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0072659 // protein localization to plasma membrane // inferred from electronic annotation /// 0090002 // establishment of protein localization to plasma membrane // inferred from mutant phenotype 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0016600 // flotillin complex // inferred from electronic annotation /// 0034451 // centriolar satellite // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from electronic annotation -39.45 515.40 -0.84 0.43 0.51 -4.60
201625_s_at 201625_s_at BE300521 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE300521 /FEA=EST /DB_XREF=gi:9184269 /DB_XREF=est:ba69f11.x1 /CLONE=IMAGE:2905677 /UG=Hs.56205 insulin induced gene 1 /FL=gb:NM_005542.1 BE300521 insulin induced gene 1 INSIG1 3638 NM_005542 /// NM_198336 /// NM_198337 /// XM_005249542 /// XM_005249543 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006991 // response to sterol depletion // inferred from electronic annotation /// 0008152 // metabolic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010894 // negative regulation of steroid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0032933 // SREBP signaling pathway // inferred from direct assay /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation /// 1901303 // negative regulation of cargo loading into COPII-coated vesicle // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -22.50 109.10 -0.84 0.43 0.51 -4.60
209895_at 209895_at AF119855 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF119855.1 /DEF=Homo sapiens PRO1847 mRNA, complete cds. /FEA=mRNA /PROD=PRO1847 /DB_XREF=gi:7770146 /UG=Hs.285196 hypothetical protein PRO1847 /FL=gb:AF119855.1 AF119855 protein tyrosine phosphatase, non-receptor type 11 PTPN11 5781 NM_002834 /// NM_080601 /// XM_006719526 /// XM_006719527 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from mutant phenotype /// 0007507 // heart development // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from mutant phenotype /// 0035265 // organ growth // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 0036302 // atrioventricular canal development // inferred from mutant phenotype /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038127 // ERBB signaling pathway // inferred from direct assay /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046825 // regulation of protein export from nucleus // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048609 // multicellular organismal reproductive process // inferred from electronic annotation /// 0048806 // genitalia development // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0051463 // negative regulation of cortisol secretion // inferred from electronic annotation /// 0060125 // negative regulation of growth hormone secretion // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from mutant phenotype /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060338 // regulation of type I interferon-mediated signaling pathway // traceable author statement /// 2001275 // positive regulation of glucose import in response to insulin stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // traceable author statement /// 0005070 // SH3/SH2 adaptor activity // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation /// 0031748 // D1 dopamine receptor binding // inferred from electronic annotation /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0051428 // peptide hormone receptor binding // inferred from electronic annotation -19.35 148.15 -0.84 0.43 0.51 -4.60
201317_s_at 201317_s_at NM_002787 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002787.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 2 (PSMA2), mRNA. /FEA=mRNA /GEN=PSMA2 /PROD=proteasome (prosome, macropain) subunit, alphatype, 2 /DB_XREF=gi:4506180 /UG=Hs.181309 proteasome (prosome, macropain) subunit, alpha type, 2 /FL=gb:NM_002787.1 NM_002787 proteasome (prosome, macropain) subunit, alpha type, 2 PSMA2 5683 NM_002787 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0009615 // response to virus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 51.10 706.55 0.84 0.43 0.51 -4.60
210527_x_at 210527_x_at L11645 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L11645.1 /DEF=Homo sapiens alpha-tubulin mRNA, complete cds. /FEA=mRNA /PROD=alpha-tubulin /DB_XREF=gi:306450 /UG=Hs.98102 tubulin, alpha 2 /FL=gb:L11645.1 L11645 tubulin, alpha 3c /// tubulin, alpha 3d TUBA3C /// TUBA3D 7278 /// 113457 NM_006001 /// NM_079836 /// NM_080386 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 15.43 120.34 0.83 0.43 0.51 -4.60
217673_x_at 217673_x_at AA650558 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA650558 /FEA=EST /DB_XREF=gi:2577886 /DB_XREF=est:nt02g10.s1 /CLONE=IMAGE:1192002 /UG=Hs.325202 ESTs, Highly similar to GBAS_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(S), ALPHA SUBUNIT H.sapiens AA650558 GNAS complex locus GNAS 2778 NM_000516 /// NM_001077488 /// NM_001077489 /// NM_001077490 /// NM_016592 /// NM_080425 /// NM_080426 /// NR_003259 /// XM_005260401 /// XM_005260402 /// XM_006723781 /// XM_006723782 0001501 // skeletal system development // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006171 // cAMP biosynthetic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007190 // activation of adenylate cyclase activity // traceable author statement /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // not recorded /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007565 // female pregnancy // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007606 // sensory perception of chemical stimulus // not recorded /// 0007608 // sensory perception of smell // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0009306 // protein secretion // non-traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040032 // post-embryonic body morphogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0046907 // intracellular transport // non-traceable author statement /// 0048589 // developmental growth // inferred from direct assay /// 0048589 // developmental growth // inferred from mutant phenotype /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050890 // cognition // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0051216 // cartilage development // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060348 // bone development // inferred from direct assay /// 0060348 // bone development // inferred from mutant phenotype /// 0060789 // hair follicle placode formation // inferred from direct assay /// 0060789 // hair follicle placode formation // inferred from mutant phenotype /// 0070527 // platelet aggregation // inferred from direct assay /// 0070527 // platelet aggregation // inferred from mutant phenotype /// 0071107 // response to parathyroid hormone // inferred from mutant phenotype /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071514 // genetic imprinting // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity /// 0071880 // adenylate cyclase-activating adrenergic receptor signaling pathway // inferred from direct assay 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0004016 // adenylate cyclase activity // traceable author statement /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from direct assay /// 0005159 // insulin-like growth factor receptor binding // /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // /// 0031748 // D1 dopamine receptor binding // /// 0031852 // mu-type opioid receptor binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051430 // corticotropin-releasing hormone receptor 1 binding // 12.13 161.09 0.83 0.43 0.51 -4.60
201584_s_at 201584_s_at NM_005804 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005804.1 /DEF=Homo sapiens nuclear RNA helicase, DECD variant of DEAD box family (DDXL), mRNA. /FEA=mRNA /GEN=DDXL /PROD=nuclear RNA helicase, DECD variant of DEAD boxfamily /DB_XREF=gi:5031658 /UG=Hs.179606 nuclear RNA helicase, DECD variant of DEAD box family /FL=gb:BC001009.1 gb:U90426.1 gb:NM_005804.1 NM_005804 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A DDX39A 10212 NM_001204057 /// NM_005804 /// NM_138998 /// NR_038336 /// NR_046366 /// XM_006722606 0000398 // mRNA splicing, via spliceosome // inferred from genetic interaction /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from genetic interaction /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -35.90 459.02 -0.83 0.43 0.51 -4.60
204090_at 204090_at NM_004197 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004197.1 /DEF=Homo sapiens serinethreonine kinase 19 (STK19), mRNA. /FEA=mRNA /GEN=STK19 /PROD=serinethreonine kinase 19 /DB_XREF=gi:4759179 /UG=Hs.444 serinethreonine kinase 19 /FL=gb:L26260.1 gb:NM_004197.1 NM_004197 serine/threonine kinase 19 STK19 8859 NM_004197 /// NM_032454 /// NR_026717 0006468 // protein phosphorylation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -13.13 64.36 -0.83 0.43 0.52 -4.60
208077_at 208077_at NM_014126 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014126.1 /DEF=Homo sapiens PRO0365 protein (PRO0365), mRNA. /FEA=mRNA /GEN=PRO0365 /PROD=PRO0365 protein /DB_XREF=gi:7662547 /UG=Hs.249613 PRO0365 protein /FL=gb:AF090921.1 gb:NM_014126.1 NM_014126 chromosome 9 open reading frame 38 C9orf38 29044 NM_014126 /// XR_108926 /// XR_113207 /// XR_171764 -10.87 33.51 -0.83 0.43 0.52 -4.60
209662_at 209662_at BC005383 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005383.1 /DEF=Homo sapiens, centrin, EF-hand protein, 3 (CDC31 yeast homolog), clone MGC:12502, mRNA, complete cds. /FEA=mRNA /PROD=centrin, EF-hand protein, 3 (CDC31 yeasthomolog) /DB_XREF=gi:13529247 /UG=Hs.29463 centrin, EF-hand protein, 3 (CDC31 yeast homolog) /FL=gb:BC005383.1 gb:NM_004365.1 BC005383 centrin, EF-hand protein, 3 CETN3 1070 NM_004365 /// XM_006714521 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007098 // centrosome cycle // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005814 // centriole // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0032391 // photoreceptor connecting cilium // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 14.60 129.22 0.83 0.43 0.52 -4.60
209654_at 209654_at BC004902 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004902.1 /DEF=Homo sapiens, clone MGC:4271, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:4271) /DB_XREF=gi:13436178 /UG=Hs.5070 KIAA0947 protein /FL=gb:BC004902.1 BC004902 interactor of little elongator complex ELL subunit 1 ICE1 23379 NM_015325 0006869 // lipid transport // inferred from electronic annotation 0005319 // lipid transporter activity // inferred from electronic annotation -12.73 149.89 -0.83 0.43 0.52 -4.60
202346_at 202346_at NM_005339 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005339.2 /DEF=Homo sapiens huntingtin interacting protein 2 (HIP2), mRNA. /FEA=mRNA /GEN=HIP2 /PROD=huntingtin interacting protein 2 /DB_XREF=gi:12545382 /UG=Hs.155485 huntingtin interacting protein 2 /FL=gb:NM_005339.2 gb:U58522.1 gb:AB022435.1 NM_005339 ubiquitin-conjugating enzyme E2K UBE2K 3093 NM_001111112 /// NM_001111113 /// NM_005339 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0032434 // regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from direct assay 12.07 176.11 0.83 0.43 0.52 -4.60
208791_at 208791_at M25915 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M25915.1 /DEF=Human complement cytolysis inhibitor (CLI) mRNA, complete cds. /FEA=mRNA /DB_XREF=gi:180619 /UG=Hs.75106 clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J) /FL=gb:J02908.1 gb:M25915.1 gb:M64722.1 gb:NM_001831.1 M25915 clusterin CLU 1191 NM_001831 /// NR_038335 /// NR_045494 /// XM_006716284 0000902 // cell morphogenesis // inferred from direct assay /// 0001774 // microglial cell activation // inferred from direct assay /// 0001836 // release of cytochrome c from mitochondria // inferred by curator /// 0002376 // immune system process // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006956 // complement activation // traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0009615 // response to virus // inferred from expression pattern /// 0017038 // protein import // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0032286 // central nervous system myelin maintenance // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0032463 // negative regulation of protein homooligomerization // inferred from mutant phenotype /// 0032760 // positive regulation of tumor necrosis factor production // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043691 // reverse cholesterol transport // traceable author statement /// 0045087 // innate immune response // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0050821 // protein stabilization // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051131 // chaperone-mediated protein complex assembly // inferred from direct assay /// 0051788 // response to misfolded protein // inferred from direct assay /// 0061077 // chaperone-mediated protein folding // inferred from direct assay /// 0061518 // microglial cell proliferation // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay /// 1900221 // regulation of beta-amyloid clearance // inferred from direct assay /// 1901214 // regulation of neuron death // inferred from direct assay /// 1901214 // regulation of neuron death // inferred from mutant phenotype /// 1901216 // positive regulation of neuron death // inferred from direct assay /// 1901216 // positive regulation of neuron death // inferred from mutant phenotype /// 1902004 // positive regulation of beta-amyloid formation // inferred from sequence or structural similarity /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from mutant phenotype /// 1902430 // negative regulation of beta-amyloid formation // inferred from direct assay /// 1902847 // regulation of neuronal signal transduction // inferred from mutant phenotype /// 1902949 // positive regulation of tau-protein kinase activity // inferred from mutant phenotype /// 1902998 // positive regulation of neurofibrillary tangle assembly // inferred from mutant phenotype /// 2000060 // positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // inferred from direct assay /// 0042583 // chromaffin granule // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay /// 0097418 // neurofibrillary tangle // inferred from direct assay /// 0097440 // apical dendrite // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016887 // ATPase activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0051787 // misfolded protein binding // inferred from direct assay /// 0051787 // misfolded protein binding // inferred from physical interaction -19.48 397.24 -0.83 0.43 0.52 -4.60
213193_x_at 213193_x_at AL559122 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL559122 /FEA=EST /DB_XREF=gi:12904310 /DB_XREF=est:AL559122 /CLONE=CS0DJ014YE01 (5 prime) /UG=Hs.303157 T cell receptor beta locus AL559122 T cell receptor beta constant 1 TRBC1 28639 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002230 // positive regulation of defense response to virus by host // inferred from direct assay /// 0002230 // positive regulation of defense response to virus by host // inferred from sequence or structural similarity /// 0002230 // positive regulation of defense response to virus by host // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from direct assay /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from sequence or structural similarity /// 0002827 // positive regulation of T-helper 1 type immune response // non-traceable author statement /// 0002827 // positive regulation of T-helper 1 type immune response // traceable author statement /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // non-traceable author statement /// 0010535 // positive regulation of activation of JAK2 kinase activity // inferred from direct assay /// 0031295 // T cell costimulation // traceable author statement /// 0032693 // negative regulation of interleukin-10 production // inferred from mutant phenotype /// 0032725 // positive regulation of granulocyte macrophage colony-stimulating factor production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // traceable author statement /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0032733 // positive regulation of interleukin-10 production // traceable author statement /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0032740 // positive regulation of interleukin-17 production // inferred from direct assay /// 0032760 // positive regulation of tumor necrosis factor production // inferred from mutant phenotype /// 0032816 // positive regulation of natural killer cell activation // inferred by curator /// 0032819 // positive regulation of natural killer cell proliferation // inferred from direct assay /// 0034105 // positive regulation of tissue remodeling // inferred by curator /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042104 // positive regulation of activated T cell proliferation // inferred from direct assay /// 0042346 // positive regulation of NF-kappaB import into nucleus // traceable author statement /// 0042510 // regulation of tyrosine phosphorylation of Stat1 protein // inferred from direct assay /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from direct assay /// 0042520 // positive regulation of tyrosine phosphorylation of Stat4 protein // inferred from direct assay /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from direct assay /// 0043382 // positive regulation of memory T cell differentiation // inferred from sequence or structural similarity /// 0043382 // positive regulation of memory T cell differentiation // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred by curator /// 0050776 // regulation of immune response // traceable author statement /// 0050829 // defense response to Gram-negative bacterium // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051135 // positive regulation of NK T cell activation // inferred by curator /// 0051135 // positive regulation of NK T cell activation // inferred from direct assay /// 0051142 // positive regulation of NK T cell proliferation // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from electronic annotation /// 2000318 // positive regulation of T-helper 17 type immune response // inferred from sequence or structural similarity /// 2000318 // positive regulation of T-helper 17 type immune response // inferred from electronic annotation /// 2000330 // positive regulation of T-helper 17 cell lineage commitment // inferred from sequence or structural similarity /// 2000330 // positive regulation of T-helper 17 cell lineage commitment // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070743 // interleukin-23 complex // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0042287 // MHC protein binding // non-traceable author statement /// 0042605 // peptide antigen binding // non-traceable author statement /// 0045519 // interleukin-23 receptor binding // inferred from direct assay /// 0045519 // interleukin-23 receptor binding // inferred from electronic annotation 17.47 157.61 0.83 0.43 0.52 -4.60
201163_s_at 201163_s_at NM_001553 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001553.1 /DEF=Homo sapiens insulin-like growth factor binding protein 7 (IGFBP7), mRNA. /FEA=mRNA /GEN=IGFBP7 /PROD=insulin-like growth factor binding protein 7 /DB_XREF=gi:4504618 /UG=Hs.119206 insulin-like growth factor binding protein 7 /FL=gb:L19182.1 gb:NM_001553.1 NM_001553 insulin-like growth factor binding protein 7 IGFBP7 3490 NM_001253835 /// NM_001553 0001558 // regulation of cell growth // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from direct assay /// 0007566 // embryo implantation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009408 // response to heat // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation /// 0051414 // response to cortisol // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation 90.17 962.86 0.83 0.43 0.52 -4.60
211983_x_at 211983_x_at BE741683 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE741683 /FEA=EST /DB_XREF=gi:10155675 /DB_XREF=est:601594740F1 /CLONE=IMAGE:3948897 /UG=Hs.14376 actin, gamma 1 BE741683 actin, beta /// actin, gamma 1 ACTB /// ACTG1 60 /// 71 NM_001101 /// NM_001199954 /// NM_001614 /// NR_037688 /// XM_006715764 /// XM_006722048 /// XM_006722049 0001895 // retina homeostasis // inferred from expression pattern /// 0006325 // chromatin organization // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034332 // adherens junction organization // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000790 // nuclear chromatin // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030016 // myofibril // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction -369.25 5214.05 -0.83 0.43 0.52 -4.60
213404_s_at 213404_s_at BF033683 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF033683 /FEA=EST /DB_XREF=gi:10741395 /DB_XREF=est:601453992F1 /CLONE=IMAGE:3857711 /UG=Hs.279903 Ras homolog enriched in brain 2 BF033683 Ras homolog enriched in brain RHEB 6009 NM_005614 /// XM_006716081 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0032008 // positive regulation of TOR signaling // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 32.12 407.49 0.82 0.44 0.52 -4.60
216306_x_at 216306_x_at X62006 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X62006.1 /DEF=H.sapiens PTB-1 gene for polypirimidine tract binding protein. /FEA=mRNA /GEN=PTB-1 /PROD=polypirimidine tract binding protein /DB_XREF=gi:35767 /UG=Hs.172550 polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) X62006 microRNA 4745 /// polypyrimidine tract binding protein 1 MIR4745 /// PTBP1 5725 /// 100616459 NM_002819 /// NM_031990 /// NM_031991 /// NM_175847 /// NR_039900 /// XM_005259597 /// XM_005259598 /// XR_244034 /// XR_244035 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051148 // negative regulation of muscle cell differentiation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008187 // poly-pyrimidine tract binding // traceable author statement /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 55.85 886.27 0.82 0.44 0.52 -4.60
216449_x_at 216449_x_at AK025862 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK025862.1 /DEF=Homo sapiens cDNA: FLJ22209 fis, clone HRC01496. /FEA=mRNA /DB_XREF=gi:10438505 /UG=Hs.288528 Homo sapiens cDNA: FLJ22209 fis, clone HRC01496 AK025862 heat shock protein 90kDa beta (Grp94), member 1 HSP90B1 7184 NM_003299 0001666 // response to hypoxia // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0015031 // protein transport // non-traceable author statement /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031247 // actin rod assembly // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051208 // sequestering of calcium ion // non-traceable author statement /// 0071318 // cellular response to ATP // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from direct assay /// 0046790 // virion binding // inferred from physical interaction /// 0050750 // low-density lipoprotein particle receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation -44.43 636.04 -0.82 0.44 0.52 -4.60
201090_x_at 201090_x_at NM_006082 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006082.1 /DEF=Homo sapiens tubulin, alpha, ubiquitous (K-ALPHA-1), mRNA. /FEA=mRNA /GEN=K-ALPHA-1 /PROD=tubulin, alpha, ubiquitous /DB_XREF=gi:5174476 /UG=Hs.278242 tubulin, alpha, ubiquitous /FL=gb:BC000696.1 gb:BC001128.1 gb:BC001209.1 gb:K00558.1 gb:AF081484.1 gb:NM_006082.1 NM_006082 tubulin, alpha 1b TUBA1B 10376 NM_006082 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 286.03 3789.14 0.82 0.44 0.52 -4.60
218097_s_at 218097_s_at NM_024040 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024040.1 /DEF=Homo sapiens hypothetical protein MGC2491 (MGC2491), mRNA. /FEA=mRNA /GEN=MGC2491 /PROD=hypothetical protein MGC2491 /DB_XREF=gi:13128995 /UG=Hs.11270 hypothetical protein MGC2491 /FL=gb:BC000262.1 gb:NM_024040.1 NM_024040 CUE domain containing 2 CUEDC2 79004 NM_024040 /// XM_005270147 /// XR_428716 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -26.67 335.59 -0.82 0.44 0.52 -4.60
200858_s_at 200858_s_at NM_001012 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001012.1 /DEF=Homo sapiens ribosomal protein S8 (RPS8), mRNA. /FEA=mRNA /GEN=RPS8 /PROD=ribosomal protein S8 /DB_XREF=gi:4506742 /UG=Hs.151604 ribosomal protein S8 /FL=gb:NM_001012.1 NM_001012 ribosomal protein S8 /// small nucleolar RNA, C/D box 38B /// small nucleolar RNA, C/D box 55 RPS8 /// SNORD38B /// SNORD55 6202 /// 26811 /// 94163 NM_001012 /// NR_000015 /// NR_001457 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000462 // maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // not recorded /// 0044822 // poly(A) RNA binding // inferred from direct assay -80.82 1604.56 -0.82 0.44 0.52 -4.60
212043_at 212043_at W72053 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W72053 /FEA=EST /DB_XREF=gi:1382323 /DB_XREF=est:zd66e04.s1 /CLONE=IMAGE:345630 /UG=Hs.110771 Homo sapiens cDNA: FLJ21904 fis, clone HEP03585 W72053 trans-golgi network protein 2 TGOLN2 10618 NM_001206840 /// NM_001206841 /// NM_001206844 /// NM_006464 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030133 // transport vesicle // traceable author statement 0005515 // protein binding // inferred from physical interaction 32.62 505.94 0.82 0.44 0.52 -4.60
201139_s_at 201139_s_at NM_003142 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003142.1 /DEF=Homo sapiens Sjogren syndrome antigen B (autoantigen La) (SSB), mRNA. /FEA=mRNA /GEN=SSB /PROD=autoantigen La /DB_XREF=gi:10835066 /UG=Hs.83715 Sjogren syndrome antigen B (autoantigen La) /FL=gb:NM_003142.1 gb:BC001289.1 gb:J04205.1 NM_003142 Sjogren syndrome antigen B (autoantigen La) SSB 6741 NM_001294145 /// NM_003142 /// XM_005246811 0006396 // RNA processing // inferred from electronic annotation /// 0006400 // tRNA modification // traceable author statement /// 0008334 // histone mRNA metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000049 // tRNA binding // traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -21.30 181.47 -0.81 0.44 0.52 -4.60
217758_s_at 217758_s_at NM_020123 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020123.1 /DEF=Homo sapiens endomembrane protein emp70 precursor isolog (LOC56889), mRNA. /FEA=mRNA /GEN=LOC56889 /PROD=endomembrane protein emp70 precursor isolog /DB_XREF=gi:10047129 /UG=Hs.8203 endomembrane protein emp70 precursor isolog /FL=gb:NM_020123.1 gb:AF160213.1 gb:AF269150.1 NM_020123 transmembrane 9 superfamily member 3 TM9SF3 56889 NM_020123 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 33.30 473.07 0.81 0.44 0.53 -4.60
212031_at 212031_at AV757384 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV757384 /FEA=EST /DB_XREF=gi:10915232 /DB_XREF=est:AV757384 /CLONE=BMFAXE02 /UG=Hs.180789 S164 protein AV757384 RNA binding motif protein 25 RBM25 58517 NM_021239 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from direct assay /// 0097194 // execution phase of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -12.93 276.31 -0.81 0.44 0.53 -4.60
217820_s_at 217820_s_at NM_018212 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018212.1 /DEF=Homo sapiens hypothetical protein FLJ10773 (FLJ10773), mRNA. /FEA=mRNA /GEN=FLJ10773 /PROD=hypothetical protein FLJ10773 /DB_XREF=gi:8922657 /UG=Hs.14838 hypothetical protein FLJ10773 /FL=gb:NM_018212.1 NM_018212 enabled homolog (Drosophila) ENAH 55740 NM_001008493 /// NM_018212 /// XM_005273182 /// XM_005273187 /// XM_005273188 /// XM_005273189 /// XM_006711786 /// XM_006711787 /// XM_006711788 /// XM_006711789 /// XM_006711790 /// XM_006711791 /// XM_006711792 /// XM_006711793 /// XM_006711794 /// XM_006711795 /// XM_006711796 /// XM_006711797 0001843 // neural tube closure // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0008154 // actin polymerization or depolymerization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // traceable author statement 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030175 // filopodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0050699 // WW domain binding // inferred from physical interaction 33.70 239.00 0.81 0.44 0.53 -4.60
221779_at 221779_at BC001090 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC001090.1 /DEF=Homo sapiens, clone IMAGE:3504989, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3504989) /DB_XREF=gi:12654518 /UG=Hs.8535 hypothetical protein bA395L14.2 BC001090 MICAL-like 1 MICALL1 85377 NM_033386 /// XM_005261791 /// XM_005261792 /// XM_006724345 0006612 // protein targeting to membrane // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0032456 // endocytic recycling // inferred from electronic annotation /// 0032458 // slow endocytic recycling // inferred from mutant phenotype /// 0036010 // protein localization to endosome // inferred from mutant phenotype /// 0097320 // membrane tubulation // inferred from direct assay /// 1990126 // retrograde transport, endosome to plasma membrane // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070300 // phosphatidic acid binding // inferred from direct assay 18.62 120.46 0.81 0.44 0.53 -4.60
200602_at 200602_at NM_000484 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000484.1 /DEF=Homo sapiens amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) (APP), mRNA. /FEA=mRNA /GEN=APP /PROD=amyloid beta (A4) precursor protein (proteasenexin-II, Alzheimer disease) /DB_XREF=gi:4502166 /UG=Hs.177486 amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) /FL=gb:NM_000484.1 NM_000484 amyloid beta (A4) precursor protein APP 351 NM_000484 /// NM_001136016 /// NM_001136129 /// NM_001136130 /// NM_001136131 /// NM_001204301 /// NM_001204302 /// NM_001204303 /// NM_201413 /// NM_201414 0000085 // mitotic G2 phase // inferred from sequence or structural similarity /// 0001967 // suckling behavior // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006378 // mRNA polyadenylation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0007617 // mating behavior // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0008088 // axon cargo transport // inferred from sequence or structural similarity /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from sequence or structural similarity /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0016199 // axon midline choice point recognition // inferred from sequence or structural similarity /// 0016322 // neuron remodeling // inferred from sequence or structural similarity /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from sequence or structural similarity /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048669 // collateral sprouting in absence of injury // inferred from sequence or structural similarity /// 0050803 // regulation of synapse structure and activity // inferred from sequence or structural similarity /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051124 // synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from mutant phenotype /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0030424 // axon // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0051233 // spindle midzone // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from sequence or structural similarity /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation /// 0051425 // PTB domain binding // inferred from physical interaction /// 0070851 // growth factor receptor binding // inferred from electronic annotation 65.73 539.81 0.81 0.45 0.53 -4.60
208736_at 208736_at AF004561 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF004561.1 /DEF=Homo sapiens p21-Arc mRNA, complete cds. /FEA=mRNA /PROD=p21-Arc /DB_XREF=gi:2209346 /UG=Hs.6895 actin related protein 23 complex, subunit 3 (21 kD) /FL=gb:AF004561.1 gb:AF006086.1 gb:NM_005719.1 AF004561 actin related protein 2/3 complex, subunit 3, 21kDa ARPC3 10094 NM_001278556 /// NM_001287222 0006928 // cellular component movement // traceable author statement /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0034314 // Arp2/3 complex-mediated actin nucleation // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 34.65 618.80 0.81 0.45 0.53 -4.60
218059_at 218059_at NM_016096 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016096.1 /DEF=Homo sapiens HSPC038 protein (LOC51123), mRNA. /FEA=mRNA /GEN=LOC51123 /PROD=HSPC038 protein /DB_XREF=gi:7705816 /UG=Hs.23528 HSPC038 protein /FL=gb:AF275802.1 gb:AF275809.1 gb:AF125099.1 gb:NM_016096.1 NM_016096 zinc finger protein 706 ZNF706 51123 NM_001042510 /// NM_001267708 /// NM_001267709 /// NM_016096 0046872 // metal ion binding // inferred from electronic annotation -49.08 485.81 -0.80 0.45 0.53 -4.60
210213_s_at 210213_s_at AF022229 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF022229.1 /DEF=Homo sapiens translation initiation factor 6 (eIF6) mRNA, complete cds. /FEA=mRNA /GEN=eIF6 /PROD=translation initiation factor 6 /DB_XREF=gi:2809382 /UG=Hs.5215 integrin beta 4 binding protein /FL=gb:AF022229.1 AF022229 eukaryotic translation initiation factor 6 EIF6 3692 NM_001267810 /// NM_002212 /// NM_181466 /// NM_181467 /// NM_181468 /// NM_181469 /// NR_052022 /// NR_052023 /// NR_052024 0000054 // ribosomal subunit export from nucleus // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042256 // mature ribosome assembly // inferred from mutant phenotype /// 0042273 // ribosomal large subunit biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005638 // lamin filament // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from direct assay /// 0043023 // ribosomal large subunit binding // inferred from electronic annotation 19.60 375.60 0.80 0.45 0.53 -4.60
208788_at 208788_at AL136939 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL136939.1 /DEF=Homo sapiens mRNA; cDNA DKFZp586B1824 (from clone DKFZp586B1824); complete cds. /FEA=mRNA /GEN=DKFZp586B1824 /PROD=hypothetical protein /DB_XREF=gi:12053372 /UG=Hs.250175 homolog of yeast long chain polyunsaturated fatty acid elongation enzyme 2 /FL=gb:NM_021814.1 gb:AL136939.1 gb:AF111849.1 gb:AF231981.1 AL136939 ELOVL fatty acid elongase 5 ELOVL5 60481 NM_001242828 /// NM_001242830 /// NM_001242831 /// NM_021814 /// XM_005249266 /// XM_005249267 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // traceable author statement /// 0033559 // unsaturated fatty acid metabolic process // traceable author statement /// 0034625 // fatty acid elongation, monounsaturated fatty acid // inferred from direct assay /// 0034626 // fatty acid elongation, polyunsaturated fatty acid // inferred from direct assay /// 0035338 // long-chain fatty-acyl-CoA biosynthetic process // traceable author statement /// 0036109 // alpha-linolenic acid metabolic process // traceable author statement /// 0042761 // very long-chain fatty acid biosynthetic process // inferred from direct assay /// 0043651 // linoleic acid metabolic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0009922 // fatty acid elongase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation -22.60 687.00 -0.80 0.45 0.53 -4.60
208731_at 208731_at AU158062 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU158062 /FEA=EST /DB_XREF=gi:11019583 /DB_XREF=est:AU158062 /CLONE=PLACE1010787 /UG=Hs.78305 RAB2, member RAS oncogene family /FL=gb:NM_002865.1 gb:M28213.1 AU158062 RAB2A, member RAS oncogene family RAB2A 5862 NM_001242644 /// NM_002865 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay 35.47 604.16 0.80 0.45 0.53 -4.60
216843_x_at 216843_x_at U38964 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U38964 /DEF=Human PMS2 related (hPMSR2) gene, complete cds /FEA=CDS /DB_XREF=gi:1055353 /UG=Hs.323954 postmeiotic segregation increased 2-like 8 U38964 postmeiotic segregation increased 2 pseudogene 1 PMS2P1 5379 NM_005394 /// NR_003613 0006298 // mismatch repair // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0032300 // mismatch repair complex // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 13.60 142.88 0.80 0.45 0.53 -4.60
200935_at 200935_at NM_004343 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004343.2 /DEF=Homo sapiens calreticulin (CALR), mRNA. /FEA=mRNA /GEN=CALR /PROD=calreticulin precursor /DB_XREF=gi:5921996 /UG=Hs.16488 calreticulin /FL=gb:BC002500.1 gb:M84739.1 gb:M32294.1 gb:NM_004343.2 NM_004343 calreticulin CALR 811 NM_004343 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002502 // peptide antigen assembly with MHC class I protein complex // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006611 // protein export from nucleus // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007050 // cell cycle arrest // inferred from genetic interaction /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0017148 // negative regulation of translation // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0022417 // protein maturation by protein folding // traceable author statement /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032355 // response to estradiol // inferred from electronic annotation /// 0033144 // negative regulation of intracellular steroid hormone receptor signaling pathway // inferred from direct assay /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034504 // protein localization to nucleus // inferred from direct assay /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042921 // glucocorticoid receptor signaling pathway // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from genetic interaction /// 0045787 // positive regulation of cell cycle // inferred from genetic interaction /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050821 // protein stabilization // traceable author statement /// 0051208 // sequestering of calcium ion // traceable author statement /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // inferred from electronic annotation /// 0071285 // cellular response to lithium ion // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0090398 // cellular senescence // inferred from genetic interaction /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from mutant phenotype /// 2000510 // positive regulation of dendritic cell chemotaxis // inferred from mutant phenotype 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005844 // polysome // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation /// 0042824 // MHC class I peptide loading complex // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement /// 0071682 // endocytic vesicle lumen // traceable author statement 0001849 // complement component C1q binding // traceable author statement /// 0001948 // glycoprotein binding // inferred from physical interaction /// 0003677 // DNA binding // non-traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0030246 // carbohydrate binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation /// 0042562 // hormone binding // inferred from electronic annotation /// 0044183 // protein binding involved in protein folding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // traceable author statement /// 0051087 // chaperone binding // traceable author statement 57.05 306.73 0.80 0.45 0.53 -4.60
201291_s_at 201291_s_at AU159942 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU159942 /FEA=EST /DB_XREF=gi:11021463 /DB_XREF=est:AU159942 /CLONE=Y79AA1000724 /UG=Hs.156346 topoisomerase (DNA) II alpha (170kD) /FL=gb:J04088.1 gb:NM_001067.1 AU159942 topoisomerase (DNA) II alpha 170kDa TOP2A 7153 NM_001067 /// XM_005257632 0000278 // mitotic cell cycle // traceable author statement /// 0000712 // resolution of meiotic recombination intermediates // not recorded /// 0000819 // sister chromatid segregation // not recorded /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // non-traceable author statement /// 0006261 // DNA-dependent DNA replication // /// 0006265 // DNA topological change // inferred from direct assay /// 0006266 // DNA ligation // inferred from direct assay /// 0006268 // DNA unwinding involved in DNA replication // not recorded /// 0006281 // DNA repair // non-traceable author statement /// 0006312 // mitotic recombination // not recorded /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0030263 // apoptotic chromosome condensation // inferred from direct assay /// 0040016 // embryonic cleavage // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0044774 // mitotic DNA integrity checkpoint // not recorded /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0045870 // positive regulation of single stranded viral RNA replication via double stranded DNA intermediate // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement 0000228 // nuclear chromosome // inferred from direct assay /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000795 // synaptonemal complex // /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from direct assay /// 0009295 // nucleoid // not recorded /// 0009330 // DNA topoisomerase complex (ATP-hydrolyzing) // inferred from direct assay /// 0019035 // viral integration complex // non-traceable author statement /// 0043234 // protein complex // inferred from physical interaction 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from direct assay /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase type II (ATP-hydrolyzing) activity // inferred from direct assay /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008301 // DNA binding, bending // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from mutant phenotype /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 15.40 113.60 0.80 0.45 0.53 -4.60
218209_s_at 218209_s_at NM_018170 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018170.1 /DEF=Homo sapiens hypothetical protein FLJ10656 (FLJ10656), mRNA. /FEA=mRNA /GEN=FLJ10656 /PROD=hypothetical protein FLJ10656 /DB_XREF=gi:8922574 /UG=Hs.300906 hypothetical protein FLJ10656 /FL=gb:NM_018170.1 NM_018170 regulation of nuclear pre-mRNA domain containing 1A RPRD1A 55197 NM_018170 /// XM_005258293 /// XM_005258294 0070940 // dephosphorylation of RNA polymerase II C-terminal domain // inferred from mutant phenotype 0016591 // DNA-directed RNA polymerase II, holoenzyme // inferred from direct assay -13.33 121.31 -0.80 0.45 0.54 -4.60
218117_at 218117_at NM_014248 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014248.1 /DEF=Homo sapiens ring-box 1 (RBX1), mRNA. /FEA=mRNA /GEN=RBX1 /PROD=ring-box 1 /DB_XREF=gi:7657507 /UG=Hs.279919 ring-box 1 /FL=gb:BC001466.1 gb:AF140598.1 gb:AF142059.1 gb:NM_014248.1 NM_014248 ring-box 1, E3 ubiquitin protein ligase RBX1 9978 NM_014248 0006281 // DNA repair // inferred from electronic annotation /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016567 // protein ubiquitination // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0045116 // protein neddylation // inferred from direct assay /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0019005 // SCF ubiquitin ligase complex // inferred from direct assay /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity /// 0030891 // VCB complex // inferred from electronic annotation /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from direct assay /// 0031462 // Cul2-RING ubiquitin ligase complex // inferred from direct assay /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay /// 0031464 // Cul4A-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0031465 // Cul4B-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0031466 // Cul5-RING ubiquitin ligase complex // inferred from direct assay /// 0031467 // Cul7-RING ubiquitin ligase complex // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 34.95 500.23 0.79 0.45 0.54 -4.60
200635_s_at 200635_s_at AU145351 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU145351 /FEA=EST /DB_XREF=gi:11006872 /DB_XREF=est:AU145351 /CLONE=HEMBA1004591 /UG=Hs.75216 protein tyrosine phosphatase, receptor type, F /FL=gb:NM_002840.1 AU145351 protein tyrosine phosphatase, receptor type, F PTPRF 5792 NM_002840 /// NM_130440 /// XM_005271079 /// XM_005271080 /// XM_005271081 /// XM_005271082 /// XM_006710795 /// XM_006710796 /// XM_006710797 /// XM_006710798 /// XM_006710799 /// XM_006710800 /// XM_006710801 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 1900121 // negative regulation of receptor binding // inferred from mutant phenotype 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 29.38 200.76 0.79 0.45 0.54 -4.60
201337_s_at 201337_s_at NM_004781 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004781.2 /DEF=Homo sapiens vesicle-associated membrane protein 3 (cellubrevin) (VAMP3), mRNA. /FEA=mRNA /GEN=VAMP3 /PROD=vesicle-associated membrane protein 3 /DB_XREF=gi:9257252 /UG=Hs.66708 vesicle-associated membrane protein 3 (cellubrevin) /FL=gb:BC003570.1 gb:NM_004781.2 NM_004781 vesicle-associated membrane protein 3 VAMP3 9341 NM_004781 0001921 // positive regulation of receptor recycling // inferred from sequence or structural similarity /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // traceable author statement /// 0006904 // vesicle docking involved in exocytosis // traceable author statement /// 0006906 // vesicle fusion // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay /// 0043001 // Golgi to plasma membrane protein transport // inferred from electronic annotation /// 0061025 // membrane fusion // traceable author statement 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030141 // secretory granule // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043229 // intracellular organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay 0000149 // SNARE binding // not recorded /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from electronic annotation 20.55 230.35 0.79 0.45 0.54 -4.60
213359_at 213359_at W74620 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W74620 /FEA=EST /DB_XREF=gi:1384833 /DB_XREF=est:zd77e04.s1 /CLONE=IMAGE:346686 /UG=Hs.303627 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD) W74620 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) HNRNPD 3184 NM_001003810 /// NM_002138 /// NM_031369 /// NM_031370 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006401 // RNA catabolic process // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from mutant phenotype /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0097167 // circadian regulation of translation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042162 // telomeric DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -25.20 83.03 -0.79 0.45 0.54 -4.60
221860_at 221860_at AL044078 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL044078 /FEA=EST /DB_XREF=gi:5935937 /DB_XREF=est:DKFZp434L2128_s1 /CLONE=DKFZp434L2128 /UG=Hs.2730 heterogeneous nuclear ribonucleoprotein L AL044078 -13.07 53.39 -0.79 0.45 0.54 -4.60
209709_s_at 209709_s_at U29343 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U29343.1 /DEF=Homo sapiens hyaluronan receptor (RHAMM) mRNA, complete cds. /FEA=mRNA /GEN=RHAMM /PROD=hyaluronan receptor /DB_XREF=gi:2959555 /UG=Hs.72550 hyaluronan-mediated motility receptor (RHAMM) /FL=gb:U29343.1 gb:AF032862.1 gb:NM_012484.1 U29343 hyaluronan-mediated motility receptor (RHAMM) HMMR 3161 NM_001142556 /// NM_001142557 /// NM_012484 /// NM_012485 0005975 // carbohydrate metabolic process // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005540 // hyaluronic acid binding // inferred from electronic annotation -15.80 146.22 -0.79 0.45 0.54 -4.60
214548_x_at 214548_x_at AF064092 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF064092.1 /DEF=Homo sapiens mutant guanine nucleotide-binding protein G(s), alpha subunit mRNA, complete cds. /FEA=CDS /PROD=mutant guanine nucleotide-binding protein G(s),alpha subunit /DB_XREF=gi:3142636 /UG=Hs.273385 guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 /FL=gb:AF064092.1 AF064092 GNAS complex locus GNAS 2778 NM_000516 /// NM_001077488 /// NM_001077489 /// NM_001077490 /// NM_016592 /// NM_080425 /// NM_080426 /// NR_003259 /// XM_005260401 /// XM_005260402 /// XM_006723781 /// XM_006723782 0001501 // skeletal system development // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006171 // cAMP biosynthetic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007190 // activation of adenylate cyclase activity // traceable author statement /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // not recorded /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007565 // female pregnancy // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007606 // sensory perception of chemical stimulus // not recorded /// 0007608 // sensory perception of smell // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0009306 // protein secretion // non-traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040032 // post-embryonic body morphogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0046907 // intracellular transport // non-traceable author statement /// 0048589 // developmental growth // inferred from direct assay /// 0048589 // developmental growth // inferred from mutant phenotype /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050890 // cognition // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0051216 // cartilage development // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060348 // bone development // inferred from direct assay /// 0060348 // bone development // inferred from mutant phenotype /// 0060789 // hair follicle placode formation // inferred from direct assay /// 0060789 // hair follicle placode formation // inferred from mutant phenotype /// 0070527 // platelet aggregation // inferred from direct assay /// 0070527 // platelet aggregation // inferred from mutant phenotype /// 0071107 // response to parathyroid hormone // inferred from mutant phenotype /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071514 // genetic imprinting // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity /// 0071880 // adenylate cyclase-activating adrenergic receptor signaling pathway // inferred from direct assay 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0004016 // adenylate cyclase activity // traceable author statement /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from direct assay /// 0005159 // insulin-like growth factor receptor binding // /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // /// 0031748 // D1 dopamine receptor binding // /// 0031852 // mu-type opioid receptor binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051430 // corticotropin-releasing hormone receptor 1 binding // -177.80 2317.40 -0.79 0.46 0.54 -4.60
202142_at 202142_at BC003090 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003090.1 /DEF=Homo sapiens, COP9 homolog, clone MGC:1297, mRNA, complete cds. /FEA=mRNA /PROD=COP9 homolog /DB_XREF=gi:13111846 /UG=Hs.75193 COP9 homolog /FL=gb:BC003090.1 gb:U51205.1 gb:NM_006710.1 BC003090 COP9 signalosome subunit 8 COPS8 10920 NM_006710 /// NM_198189 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010388 // cullin deneddylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 27.93 391.76 0.79 0.46 0.54 -4.60
201883_s_at 201883_s_at D29805 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D29805.1 /DEF=Human mRNA for beta-1,4-galactosyltransferase, complete cds. /FEA=mRNA /PROD=beta-1,4-galactosyltransferase /DB_XREF=gi:474986 /UG=Hs.198248 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 /FL=gb:NM_001497.1 gb:D29805.1 D29805 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 B4GALT1 2683 NM_001497 /// XM_005251440 0002064 // epithelial cell development // inferred from electronic annotation /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005989 // lactose biosynthetic process // inferred from electronic annotation /// 0006012 // galactose metabolic process // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0007338 // single fertilization // traceable author statement /// 0007339 // binding of sperm to zona pellucida // traceable author statement /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009101 // glycoprotein biosynthetic process // inferred from electronic annotation /// 0009312 // oligosaccharide biosynthetic process // inferred from direct assay /// 0009312 // oligosaccharide biosynthetic process // non-traceable author statement /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032504 // multicellular organism reproduction // traceable author statement /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045136 // development of secondary sexual characteristics // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0051270 // regulation of cellular component movement // inferred from electronic annotation /// 0060046 // regulation of acrosome reaction // inferred from electronic annotation /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // inferred from electronic annotation /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0060058 // positive regulation of apoptotic process involved in mammary gland involution // inferred from electronic annotation 0000138 // Golgi trans cisterna // inferred from direct assay /// 0000139 // Golgi membrane // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0030057 // desmosome // inferred from direct assay /// 0030112 // glycocalyx // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // inferred from direct assay /// 0003945 // N-acetyllactosamine synthase activity // inferred from direct assay /// 0004461 // lactose synthase activity // inferred from direct assay /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008378 // galactosyltransferase activity // non-traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0035250 // UDP-galactosyltransferase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043014 // alpha-tubulin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from physical interaction -14.32 68.06 -0.79 0.46 0.54 -4.60
202603_at 202603_at N51370 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N51370 /FEA=EST /DB_XREF=gi:1192536 /DB_XREF=est:yz16d01.s1 /CLONE=IMAGE:283201 /UG=Hs.172028 a disintegrin and metalloproteinase domain 10 /FL=gb:AF009615.1 gb:NM_001110.1 N51370 ADAM metallopeptidase domain 10 ADAM10 102 NM_001110 /// XM_005254117 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006509 // membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0007162 // negative regulation of cell adhesion // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0007267 // cell-cell signaling // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010820 // positive regulation of T cell chemotaxis // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030574 // collagen catabolic process // traceable author statement /// 0034612 // response to tumor necrosis factor // inferred from direct assay /// 0042117 // monocyte activation // inferred from mutant phenotype /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0051089 // constitutive protein ectodomain proteolysis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005798 // Golgi-associated vesicle // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097038 // perinuclear endoplasmic reticulum // inferred from direct assay /// 0097197 // tetraspanin-enriched microdomain // inferred from direct assay 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0004222 // metalloendopeptidase activity // non-traceable author statement /// 0005102 // receptor binding // non-traceable author statement /// 0005178 // integrin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // inferred from mutant phenotype /// 0008237 // metallopeptidase activity // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -20.35 526.00 -0.79 0.46 0.54 -4.60
205370_x_at 205370_x_at NM_001918 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001918.1 /DEF=Homo sapiens dihydrolipoamide branched chain transacylase (E2 component of branched chain keto acid dehydrogenase complex; maple syrup urine disease) (DBT), mRNA. /FEA=mRNA /GEN=DBT /PROD=dihydrolipoamide branched chain transacylase (E2component of branched chain keto acid dehydrogenasecomplex; maple syrup urine disease) /DB_XREF=gi:4503264 /UG=Hs.139410 dihydrolipoamide branched chain transacylase (E2 component of branched chain keto acid dehydrogenase complex; maple syrup urine disease) /FL=gb:J03208.1 gb:NM_001918.1 gb:M27093.1 NM_001918 dihydrolipoamide branched chain transacylase E2 DBT 1629 NM_001918 /// XM_005270545 /// XM_005270546 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched-chain amino acid catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046949 // fatty-acyl-CoA biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0043754 // dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 61.88 374.04 0.79 0.46 0.54 -4.60
202253_s_at 202253_s_at NM_004945 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004945.1 /DEF=Homo sapiens dynamin 2 (DNM2), mRNA. /FEA=mRNA /GEN=DNM2 /PROD=dynamin 2 /DB_XREF=gi:4826699 /UG=Hs.167013 dynamin 2 /FL=gb:L36983.1 gb:NM_004945.1 NM_004945 dynamin 2 DNM2 1785 NM_001005360 /// NM_001005361 /// NM_001005362 /// NM_001190716 /// NM_004945 0000086 // G2/M transition of mitotic cell cycle // non-traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006184 // GTP catabolic process // non-traceable author statement /// 0006184 // GTP catabolic process // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // non-traceable author statement /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0031623 // receptor internalization // inferred from mutant phenotype /// 0033572 // transferrin transport // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // non-traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0048489 // synaptic vesicle transport // non-traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045334 // clathrin-coated endocytic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // non-traceable author statement /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008017 // microtubule binding // non-traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // non-traceable author statement /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation 10.95 74.28 0.79 0.46 0.54 -4.60
208714_at 208714_at AF092131 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF092131.1 /DEF=Homo sapiens 51kDa subunit of NADH dehydrogenase mRNA, complete cds. /FEA=mRNA /PROD=51kDa subunit of NADH dehydrogenase /DB_XREF=gi:5138911 /UG=Hs.7744 NADH dehydrogenase (ubiquinone) flavoprotein 1 (51kD) /FL=gb:AF053070.1 gb:AF092131.1 gb:NM_007103.1 AF092131 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa NDUFV1 4723 NM_001166102 /// NM_007103 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred by curator /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // non-traceable author statement /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // inferred from mutant phenotype /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NAD(P)H // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation -27.75 313.40 -0.79 0.46 0.54 -4.60
202373_s_at 202373_s_at AF255648 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF255648.1 /DEF=Homo sapiens rGAP-iso mRNA, complete cds. /FEA=mRNA /PROD=rGAP-iso /DB_XREF=gi:12005820 /UG=Hs.197289 rab3 GTPase-activating protein, non-catalytic subunit (150kD) /FL=gb:AF255648.1 gb:AF004828.1 gb:NM_012414.1 AF255648 aurora kinase A pseudogene 1 /// RAB3 GTPase activating protein subunit 2 (non-catalytic) AURKAPS1 /// RAB3GAP2 6791 /// 25782 NM_012414 /// NR_001587 0006364 // rRNA processing // inferred from sequence or structural similarity /// 0006886 // intracellular protein transport // traceable author statement /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0043087 // regulation of GTPase activity // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // traceable author statement /// 0030234 // enzyme regulator activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity 16.43 196.54 0.78 0.46 0.54 -4.60
200859_x_at 200859_x_at NM_001456 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001456.1 /DEF=Homo sapiens filamin A, alpha (actin-binding protein-280) (FLNA), mRNA. /FEA=mRNA /GEN=FLNA /PROD=filamin 1 (actin-binding protein-280) /DB_XREF=gi:4503744 /UG=Hs.195464 filamin A, alpha (actin-binding protein-280) /FL=gb:NM_001456.1 NM_001456 filamin A, alpha FLNA 2316 NM_001110556 /// NM_001456 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0007195 // adenylate cyclase-inhibiting dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0034329 // cell junction assembly // traceable author statement /// 0034394 // protein localization to cell surface // inferred from direct assay /// 0042177 // negative regulation of protein catabolic process // inferred from mutant phenotype /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from mutant phenotype /// 0043113 // receptor clustering // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045184 // establishment of protein localization // inferred from direct assay /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0051220 // cytoplasmic sequestering of protein // inferred from mutant phenotype /// 0051764 // actin crosslink formation // inferred from direct assay /// 0090307 // spindle assembly involved in mitosis // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred by curator /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031523 // Myb complex // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097440 // apical dendrite // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0017048 // Rho GTPase binding // inferred from direct assay /// 0017160 // Ral GTPase binding // inferred from direct assay /// 0031267 // small GTPase binding // inferred from direct assay /// 0031852 // mu-type opioid receptor binding // inferred from electronic annotation /// 0034988 // Fc-gamma receptor I complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0048365 // Rac GTPase binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from direct assay 80.65 970.75 0.78 0.46 0.54 -4.60
202543_s_at 202543_s_at BC005359 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005359.1 /DEF=Homo sapiens, glia maturation factor, beta, clone MGC:12462, mRNA, complete cds. /FEA=mRNA /PROD=glia maturation factor, beta /DB_XREF=gi:13529184 /UG=Hs.151413 glia maturation factor, beta /FL=gb:BC005359.1 gb:M86492.1 gb:AB001106.1 gb:NM_004124.1 BC005359 glia maturation factor, beta GMFB 2764 NM_004124 /// XM_005267541 /// XM_006720118 0006468 // protein phosphorylation // traceable author statement /// 0006469 // negative regulation of protein kinase activity // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0043085 // positive regulation of catalytic activity // traceable author statement 0005622 // intracellular // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // traceable author statement /// 0004871 // signal transducer activity // traceable author statement /// 0008047 // enzyme activator activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 15.15 109.90 0.78 0.46 0.54 -4.60
209369_at 209369_at M63310 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M63310.1 /DEF=Human 1,2-cyclic-inositol-phosphate phosphodiesterase (ANX3) mRNA, complete cds. /FEA=mRNA /GEN=ANX3 /PROD=1,2-cyclic-inositol-phosphate phosphodiesterase /DB_XREF=gi:178696 /UG=Hs.1378 annexin A3 /FL=gb:BC000871.1 gb:M63310.1 gb:M20560.1 gb:NM_005139.1 M63310 annexin A3 ANXA3 306 NM_005139 /// XM_005262973 0006909 // phagocytosis // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0042742 // defense response to bacterium // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043312 // neutrophil degranulation // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030670 // phagocytic vesicle membrane // inferred from direct assay /// 0042581 // specific granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0019834 // phospholipase A2 inhibitor activity // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from physical interaction -20.08 148.59 -0.78 0.46 0.54 -4.60
204495_s_at 204495_s_at NM_015492 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015492.1 /DEF=Homo sapiens DKFZP434H132 protein (DKFZP434H132), mRNA. /FEA=mRNA /GEN=DKFZP434H132 /PROD=DKFZP434H132 protein /DB_XREF=gi:7661575 /UG=Hs.17936 DKFZP434H132 protein /FL=gb:BC000540.1 gb:NM_015492.1 NM_015492 chromosome 15 open reading frame 39 C15orf39 56905 NM_015492 /// XM_005254551 /// XM_006720613 0005737 // cytoplasm // inferred from direct assay -12.93 108.59 -0.78 0.46 0.54 -4.60
213646_x_at 213646_x_at BE300252 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE300252 /FEA=EST /DB_XREF=gi:9184000 /DB_XREF=est:600944004T1 /CLONE=IMAGE:2960280 /UG=Hs.240615 hypothetical protein FLJ13556 similar to N-myc downstream regulated 3 BE300252 tubulin, alpha 1b TUBA1B 10376 NM_006082 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 242.55 3843.50 0.78 0.46 0.54 -4.60
218439_s_at 218439_s_at NM_016144 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016144.1 /DEF=Homo sapiens PTD002 protein (PTD002), mRNA. /FEA=mRNA /GEN=PTD002 /PROD=PTD002 protein /DB_XREF=gi:7706662 /UG=Hs.41767 PTD002 protein /FL=gb:BC005179.1 gb:AF078857.1 gb:NM_016144.1 NM_016144 COMM domain containing 10 COMMD10 51397 NM_016144 0005515 // protein binding // inferred from physical interaction 34.15 250.12 0.78 0.46 0.54 -4.60
207040_s_at 207040_s_at NM_003932 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003932.1 /DEF=Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein) (ST13), mRNA. /FEA=mRNA /GEN=ST13 /PROD=progesterone receptor-associated p48 protein /DB_XREF=gi:4505562 /UG=Hs.119222 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein) /FL=gb:NM_003932.1 gb:U28918.1 NM_003932 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) ST13 6767 NM_001278589 /// NM_003932 0006457 // protein folding // traceable author statement /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0061084 // negative regulation of protein refolding // inferred from electronic annotation /// 0070389 // chaperone cofactor-dependent protein refolding // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // traceable author statement /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032564 // dATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation -51.28 1074.79 -0.78 0.46 0.54 -4.60
216187_x_at 216187_x_at AF222691 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF222691.1 /DEF=Homo sapiens Alu repeat (LNX1) mRNA sequence. /FEA=mRNA /DB_XREF=gi:12655850 /UG=Hs.307008 Homo sapiens Alu repeat (LNX1) mRNA sequence AF222691 32.50 205.50 0.78 0.46 0.54 -4.60
200902_at 200902_at NM_004261 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004261.1 /DEF=Homo sapiens 15 kDa selenoprotein (SEP15), mRNA. /FEA=mRNA /GEN=SEP15 /PROD=15 kDa selenoprotein /DB_XREF=gi:4759095 /UG=Hs.90606 15 kDa selenoprotein /FL=gb:AF288991.1 gb:BC005294.1 gb:AF051894.1 gb:NM_004261.1 NM_004261 15 kDa selenoprotein SEP15 9403 NM_004261 /// NM_203341 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008430 // selenium binding // inferred from direct assay 40.42 405.59 0.78 0.46 0.54 -4.60
201694_s_at 201694_s_at NM_001964 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001964.1 /DEF=Homo sapiens early growth response 1 (EGR1), mRNA. /FEA=mRNA /GEN=EGR1 /PROD=early growth response 1 /DB_XREF=gi:4503492 /UG=Hs.326035 early growth response 1 /FL=gb:M62829.1 gb:NM_001964.1 NM_001964 early growth response 1 EGR1 1958 NM_001964 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0007611 // learning or memory // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032354 // response to follicle-stimulating hormone // inferred from electronic annotation /// 0032868 // response to insulin // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0033233 // regulation of protein sumoylation // inferred from direct assay /// 0034465 // response to carbon monoxide // inferred from electronic annotation /// 0034698 // response to gonadotropin // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0035914 // skeletal muscle cell differentiation // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // not recorded /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0070498 // interleukin-1-mediated signaling pathway // inferred from mutant phenotype /// 0071236 // cellular response to antibiotic // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0071317 // cellular response to isoquinoline alkaloid // inferred from electronic annotation /// 0071320 // cellular response to cAMP // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071371 // cellular response to gonadotropin stimulus // not recorded /// 0071372 // cellular response to follicle-stimulating hormone stimulus // inferred from electronic annotation /// 0071383 // cellular response to steroid hormone stimulus // inferred from electronic annotation /// 0071455 // cellular response to hyperoxia // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 0071480 // cellular response to gamma radiation // inferred from electronic annotation /// 0071504 // cellular response to heparin // inferred from sequence or structural similarity /// 0071506 // cellular response to mycophenolic acid // inferred from sequence or structural similarity /// 0071873 // response to norepinephrine // inferred from electronic annotation /// 0072110 // glomerular mesangial cell proliferation // inferred from sequence or structural similarity /// 0072303 // positive regulation of glomerular metanephric mesangial cell proliferation // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from direct assay /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0000982 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 13.37 96.44 0.78 0.46 0.54 -4.60
218239_s_at 218239_s_at NM_012341 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012341.1 /DEF=Homo sapiens GTP-binding protein (NGB), mRNA. /FEA=mRNA /GEN=NGB /PROD=GTP-binding protein /DB_XREF=gi:6912531 /UG=Hs.215766 GTP-binding protein /FL=gb:AF325353.1 gb:AF120334.1 gb:NM_012341.1 NM_012341 GTP binding protein 4 GTPBP4 23560 NM_012341 /// XM_006717437 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006184 // GTP catabolic process // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0015684 // ferrous iron transport // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0033342 // negative regulation of collagen binding // inferred from mutant phenotype /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 16.85 214.93 0.78 0.46 0.54 -4.60
207760_s_at 207760_s_at NM_006312 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006312.1 /DEF=Homo sapiens nuclear receptor co-repressor 2 (NCOR2), mRNA. /FEA=mRNA /GEN=NCOR2 /PROD=nuclear receptor co-repressor 2 /DB_XREF=gi:5454073 /UG=Hs.287994 nuclear receptor co-repressor 2 /FL=gb:AF113003.1 gb:NM_006312.1 NM_006312 nuclear receptor corepressor 2 NCOR2 9612 NM_001077261 /// NM_001206654 /// NM_006312 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007595 // lactation // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042698 // ovulation cycle // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0050872 // white fat cell differentiation // inferred from electronic annotation /// 0060206 // estrous cycle phase // inferred from electronic annotation /// 0060509 // Type I pneumocyte differentiation // inferred from electronic annotation /// 0072365 // regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016604 // nuclear body // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0001012 // RNA polymerase II regulatory region DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0005112 // Notch binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 17.75 395.30 0.77 0.46 0.55 -4.61
222329_x_at 222329_x_at AW974816 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW974816 /FEA=EST /DB_XREF=gi:8166019 /DB_XREF=est:EST386921 /UG=Hs.283517 ESTs, Weakly similar to ALU1_HUMAN ALU SUBFAMILY J SEQUENCE CONTAMINATION WARNING ENTRY H.sapiens AW974816 14.50 72.78 0.77 0.46 0.55 -4.61
218391_at 218391_at NM_007241 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007241.1 /DEF=Homo sapiens EAP30 subunit of ELL complex (EAP30), mRNA. /FEA=mRNA /GEN=EAP30 /PROD=EAP30 subunit of ELL complex /DB_XREF=gi:6005754 /UG=Hs.132785 EAP30 subunit of ELL complex /FL=gb:AF156102.1 gb:NM_007241.1 NM_007241 SNF8, ESCRT-II complex subunit SNF8 11267 NM_007241 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016197 // endosomal transport // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction -17.05 323.10 -0.77 0.46 0.55 -4.61
217855_x_at 217855_x_at NM_016547 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016547.1 /DEF=Homo sapiens calcium binding protein Cab45 precursor, (LOC51767), mRNA. /FEA=mRNA /GEN=LOC51767 /PROD=calcium binding protein Cab45 precursor, /DB_XREF=gi:7706572 /UG=Hs.42806 calcium binding protein Cab45 precursor, /FL=gb:AF178986.1 gb:NM_016547.1 NM_016547 stromal cell derived factor 4 SDF4 51150 NM_016176 /// NM_016547 0006887 // exocytosis // inferred from electronic annotation /// 0009650 // UV protection // inferred from sequence or structural similarity /// 0017156 // calcium ion-dependent exocytosis // inferred from sequence or structural similarity /// 0021549 // cerebellum development // inferred from sequence or structural similarity /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0045471 // response to ethanol // inferred from sequence or structural similarity /// 0070625 // zymogen granule exocytosis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005796 // Golgi lumen // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0032059 // bleb // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation -56.20 501.77 -0.77 0.46 0.55 -4.61
208246_x_at 208246_x_at NM_017618 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017618.1 /DEF=Homo sapiens hypothetical protein FLJ20006 (FLJ20006), mRNA. /FEA=mRNA /GEN=FLJ20006 /PROD=hypothetical protein FLJ20006 /DB_XREF=gi:8923014 /UG=Hs.279007 hypothetical protein FLJ20006 /FL=gb:NM_017618.1 NM_017618 RP11-403P17.4 16.75 90.42 0.77 0.46 0.55 -4.61
217926_at 217926_at NM_014047 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014047.1 /DEF=Homo sapiens HSPC023 protein (HSPC023), mRNA. /FEA=mRNA /GEN=HSPC023 /PROD=HSPC023 protein /DB_XREF=gi:7661741 /UG=Hs.279945 HSPC023 protein /FL=gb:AF078852.1 gb:NM_014047.1 NM_014047 chromosome 19 open reading frame 53 C19orf53 28974 NM_014047 18.05 348.57 0.77 0.46 0.55 -4.61
201897_s_at 201897_s_at NM_001826 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001826.1 /DEF=Homo sapiens CDC28 protein kinase 1 (CKS1), mRNA. /FEA=mRNA /GEN=CKS1 /PROD=CDC28 protein kinase 1 /DB_XREF=gi:4502856 /UG=Hs.77550 CDC28 protein kinase 1 /FL=gb:BC001425.1 gb:AF274941.1 gb:AF279897.1 gb:NM_001826.1 NM_001826 CDC28 protein kinase regulatory subunit 1B CKS1B 1163 NM_001826 /// NR_024163 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005654 // nucleoplasm // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein serine/threonine kinase regulator activity // inferred from electronic annotation -21.90 281.45 -0.77 0.47 0.55 -4.61
208921_s_at 208921_s_at L12387 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L12387.1 /DEF=Human sorcin (SRI) mRNA, complete cds. /FEA=mRNA /GEN=SRI /PROD=sorcin /DB_XREF=gi:459835 /UG=Hs.300741 sorcin /FL=gb:M32886.1 gb:NM_003130.1 gb:L12387.1 L12387 sorcin SRI 6717 NM_001256891 /// NM_001256892 /// NM_003130 /// NM_198901 /// XM_006716097 0001508 // action potential // traceable author statement /// 0006508 // proteolysis // not recorded /// 0006810 // transport // traceable author statement /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006880 // intracellular sequestering of iron ion // traceable author statement /// 0006942 // regulation of striated muscle contraction // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007507 // heart development // traceable author statement /// 0007517 // muscle organ development // traceable author statement /// 0008016 // regulation of heart contraction // traceable author statement /// 0010459 // negative regulation of heart rate // inferred from mutant phenotype /// 0010649 // regulation of cell communication by electrical coupling // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // traceable author statement /// 0035774 // positive regulation of insulin secretion involved in cellular response to glucose stimulus // inferred from electronic annotation /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0086004 // regulation of cardiac muscle cell contraction // inferred from mutant phenotype /// 1901077 // regulation of relaxation of muscle // inferred from mutant phenotype /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from mutant phenotype /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred from mutant phenotype /// 2000678 // negative regulation of transcription regulatory region DNA binding // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // traceable author statement /// 0030018 // Z disc // inferred from direct assay /// 0030315 // T-tubule // traceable author statement /// 0031982 // vesicle // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0042584 // chromaffin granule membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0005102 // receptor binding // traceable author statement /// 0005246 // calcium channel regulator activity // traceable author statement /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044325 // ion channel binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0070491 // repressing transcription factor binding // inferred from electronic annotation -24.65 818.80 -0.77 0.47 0.55 -4.61
201222_s_at 201222_s_at AL527365 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL527365 /FEA=EST /DB_XREF=gi:12790858 /DB_XREF=est:AL527365 /CLONE=CS0DC021YG08 (5 prime) /UG=Hs.178658 RAD23 (S. cerevisiae) homolog B /FL=gb:NM_002874.1 gb:D21090.1 AL527365 RAD23 homolog B (S. cerevisiae) RAD23B 5887 NM_001244713 /// NM_001244724 /// NM_002874 0000715 // nucleotide-excision repair, DNA damage recognition // inferred from direct assay /// 0000715 // nucleotide-excision repair, DNA damage recognition // traceable author statement /// 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006289 // nucleotide-excision repair // inferred from direct assay /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0032434 // regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0071942 // XPC complex // inferred from direct assay 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031593 // polyubiquitin binding // inferred from direct assay 28.05 441.07 0.77 0.47 0.55 -4.61
214629_x_at 214629_x_at AF320999 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF320999.1 /DEF=Homo sapiens Nogo-A protein short form mRNA, complete cds, alternatively spliced. /FEA=CDS /PROD=Nogo-A protein short form /DB_XREF=gi:11878277 /UG=Hs.65450 reticulon 4 /FL=gb:AF320999.1 AF320999 reticulon 4 RTN4 57142 NM_007008 /// NM_020532 /// NM_153828 /// NM_207520 /// NM_207521 /// XM_005264434 0001525 // angiogenesis // inferred from electronic annotation /// 0006915 // apoptotic process // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007413 // axonal fasciculation // inferred from sequence or structural similarity /// 0021801 // cerebral cortex radial glia guided migration // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030334 // regulation of cell migration // inferred from direct assay /// 0030517 // negative regulation of axon extension // inferred from direct assay /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050770 // regulation of axonogenesis // traceable author statement /// 0050771 // negative regulation of axonogenesis // traceable author statement /// 0051960 // regulation of nervous system development // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // inferred from electronic annotation /// 0071786 // endoplasmic reticulum tubular network organization // inferred from mutant phenotype /// 2000172 // regulation of branching morphogenesis of a nerve // inferred from sequence or structural similarity 0005622 // intracellular // inferred from mutant phenotype /// 0005635 // nuclear envelope // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 130.08 1558.44 0.77 0.47 0.55 -4.61
201109_s_at 201109_s_at AV726673 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV726673 /FEA=EST /DB_XREF=gi:10836094 /DB_XREF=est:AV726673 /CLONE=HTCBGC12 /UG=Hs.87409 thrombospondin 1 /FL=gb:NM_003246.1 AV726673 thrombospondin 1 THBS1 7057 NM_003246 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0001666 // response to hypoxia // non-traceable author statement /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001953 // negative regulation of cell-matrix adhesion // inferred from direct assay /// 0002040 // sprouting angiogenesis // inferred from mutant phenotype /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0002576 // platelet degranulation // traceable author statement /// 0002581 // negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from direct assay /// 0002605 // negative regulation of dendritic cell antigen processing and presentation // inferred from direct assay /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003197 // endocardial cushion development // inferred from electronic annotation /// 0003417 // growth plate cartilage development // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from expression pattern /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007155 // cell adhesion // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010596 // negative regulation of endothelial cell migration // inferred from direct assay /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from direct assay /// 0010751 // negative regulation of nitric oxide mediated signal transduction // inferred from direct assay /// 0010754 // negative regulation of cGMP-mediated signaling // inferred from direct assay /// 0010757 // negative regulation of plasminogen activation // inferred from direct assay /// 0010759 // positive regulation of macrophage chemotaxis // inferred from sequence or structural similarity /// 0010763 // positive regulation of fibroblast migration // inferred from direct assay /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0018149 // peptide cross-linking // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030194 // positive regulation of blood coagulation // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032570 // response to progesterone // traceable author statement /// 0032695 // negative regulation of interleukin-12 production // inferred from direct assay /// 0032914 // positive regulation of transforming growth factor beta1 production // inferred from sequence or structural similarity /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034605 // cellular response to heat // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from direct assay /// 0043032 // positive regulation of macrophage activation // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043652 // engulfment of apoptotic cell // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0048266 // behavioral response to pain // inferred from sequence or structural similarity /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050921 // positive regulation of chemotaxis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay /// 0051895 // negative regulation of focal adhesion assembly // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0051918 // negative regulation of fibrinolysis // inferred from direct assay /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071636 // positive regulation of transforming growth factor beta production // inferred from electronic annotation /// 1900119 // positive regulation of execution phase of apoptosis // inferred from direct assay /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from direct assay /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity /// 0030141 // secretory granule // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // traceable author statement /// 0031091 // platelet alpha granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001786 // phosphatidylserine binding // inferred from direct assay /// 0001948 // glycoprotein binding // non-traceable author statement /// 0001968 // fibronectin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from mutant phenotype /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from direct assay /// 0017134 // fibroblast growth factor binding // inferred from direct assay /// 0030169 // low-density lipoprotein particle binding // inferred from direct assay /// 0042802 // identical protein binding // non-traceable author statement /// 0043236 // laminin binding // inferred from direct assay /// 0043394 // proteoglycan binding // traceable author statement /// 0050431 // transforming growth factor beta binding // inferred from sequence or structural similarity /// 0050431 // transforming growth factor beta binding // traceable author statement /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0070051 // fibrinogen binding // inferred from direct assay /// 0070052 // collagen V binding // inferred from direct assay -136.00 2635.00 -0.77 0.47 0.55 -4.61
201672_s_at 201672_s_at NM_005151 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005151.1 /DEF=Homo sapiens ubiquitin specific protease 14 (tRNA-guanine transglycosylase) (USP14), mRNA. /FEA=mRNA /GEN=USP14 /PROD=ubiquitin specific protease 14 (tRNA-guaninetransglycosylase) /DB_XREF=gi:4827049 /UG=Hs.75981 ubiquitin specific protease 14 (tRNA-guanine transglycosylase) /FL=gb:BC003556.1 gb:NM_005151.1 gb:U30888.1 NM_005151 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) USP14 9097 NM_001037334 /// NM_005151 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from mutant phenotype /// 0016579 // protein deubiquitination // inferred from direct assay /// 0050920 // regulation of chemotaxis // inferred from mutant phenotype /// 0061136 // regulation of proteasomal protein catabolic process // inferred from mutant phenotype 0000502 // proteasome complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004866 // endopeptidase inhibitor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008193 // tRNA guanylyltransferase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0070628 // proteasome binding // inferred from direct assay -27.57 789.86 -0.77 0.47 0.55 -4.61
216640_s_at 216640_s_at AK026926 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026926.1 /DEF=Homo sapiens cDNA: FLJ23273 fis, clone HEP02611, highly similar to HSU79278 Human protein disulfide isomerase-related protein P5 mRNA. /FEA=mRNA /DB_XREF=gi:10439898 /UG=Hs.182429 protein disulfide isomerase-related protein AK026926 protein disulfide isomerase family A, member 6 PDIA6 10130 NM_001282704 /// NM_001282705 /// NM_001282706 /// NM_001282707 /// NM_005742 /// XM_005246145 /// XM_006711856 0006457 // protein folding // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation -74.85 1051.67 -0.77 0.47 0.55 -4.61
218686_s_at 218686_s_at NM_022450 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022450.1 /DEF=Homo sapiens hypothetical protein FLJ22357 similar to epidermal growth factor receptor-related protein (FLJ22357), mRNA. /FEA=mRNA /GEN=FLJ22357 /PROD=hypothetical protein FLJ22357 similar toepidermal growth factor receptor-related protein /DB_XREF=gi:11967982 /UG=Hs.57988 hypothetical protein FLJ22357 similar to epidermal growth factor receptor-related protein /FL=gb:NM_022450.1 NM_022450 rhomboid 5 homolog 1 (Drosophila) RHBDF1 64285 NM_022450 /// XM_005255494 /// XM_005255498 /// XM_006720918 /// XM_006720919 /// XM_006720920 /// XM_006720921 /// XM_006720922 /// XR_429644 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0042058 // regulation of epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0050708 // regulation of protein secretion // inferred from mutant phenotype /// 0050709 // negative regulation of protein secretion // inferred from direct assay /// 0061136 // regulation of proteasomal protein catabolic process // inferred from direct assay 0000139 // Golgi membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0019838 // growth factor binding // inferred from electronic annotation -21.17 198.86 -0.76 0.47 0.55 -4.61
201505_at 201505_at NM_002291 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002291.1 /DEF=Homo sapiens laminin, beta 1 (LAMB1), mRNA. /FEA=mRNA /GEN=LAMB1 /PROD=laminin, beta 1 precursor /DB_XREF=gi:4504950 /UG=Hs.82124 laminin, beta 1 /FL=gb:M61916.1 gb:NM_002291.1 NM_002291 laminin, beta 1 LAMB1 3912 NM_002291 0007155 // cell adhesion // traceable author statement /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0021812 // neuronal-glial interaction involved in cerebral cortex radial glia guided migration // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031175 // neuron projection development // inferred from direct assay /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0042476 // odontogenesis // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005604 // basement membrane // traceable author statement /// 0005605 // basal lamina // inferred from electronic annotation /// 0005606 // laminin-1 complex // inferred from direct assay /// 0005606 // laminin-1 complex // inferred from physical interaction /// 0005606 // laminin-1 complex // traceable author statement /// 0005607 // laminin-2 complex // inferred from direct assay /// 0005607 // laminin-2 complex // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0043256 // laminin complex // inferred from electronic annotation /// 0043257 // laminin-8 complex // inferred from direct assay /// 0043257 // laminin-8 complex // traceable author statement /// 0043259 // laminin-10 complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // non-traceable author statement /// 0005201 // extracellular matrix structural constituent // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0043208 // glycosphingolipid binding // inferred from electronic annotation -30.38 518.41 -0.76 0.47 0.55 -4.61
221476_s_at 221476_s_at AF279903 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF279903.1 /DEF=Homo sapiens 60S ribosomal protein L15 (EC45) mRNA, complete cds. /FEA=mRNA /GEN=EC45 /PROD=60S ribosomal protein L15 /DB_XREF=gi:12006349 /UG=Hs.74267 ribosomal protein L15 /FL=gb:AF279903.1 gb:L25899.1 gb:NM_002948.1 AF279903 ribosomal protein L15 RPL15 6138 NM_001253379 /// NM_001253380 /// NM_001253382 /// NM_001253383 /// NM_001253384 /// NM_002948 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // traceable author statement /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -58.95 1580.40 -0.76 0.47 0.55 -4.61
201001_s_at 201001_s_at BG164064 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG164064 /FEA=EST /DB_XREF=gi:12670767 /DB_XREF=est:602341091F1 /CLONE=IMAGE:4449022 /UG=Hs.75875 ubiquitin-conjugating enzyme E2 variant 1 /FL=gb:U39361.1 gb:NM_003349.2 gb:BC000468.1 BG164064 transmembrane protein 189 /// TMEM189-UBE2V1 readthrough /// ubiquitin-conjugating enzyme E2 variant 1 /// ubiquitin-conjugating enzyme E2 variant 2 TMEM189 /// TMEM189-UBE2V1 /// UBE2V1 /// UBE2V2 7335 /// 7336 /// 387521 /// 387522 NM_001032288 /// NM_001162505 /// NM_001257393 /// NM_001257394 /// NM_001257395 /// NM_001257396 /// NM_001257397 /// NM_001257398 /// NM_001257399 /// NM_001282575 /// NM_001282576 /// NM_001282577 /// NM_001282578 /// NM_001282579 /// NM_001282580 /// NM_003349 /// NM_003350 /// NM_021988 /// NM_022442 /// NM_199129 /// NM_199144 /// NM_199203 /// NR_027889 /// NR_047554 /// NR_104218 /// XM_005251300 0000209 // protein polyubiquitination // traceable author statement /// 0000729 // DNA double-strand break processing // inferred from mutant phenotype /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0006282 // regulation of DNA repair // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0016567 // protein ubiquitination // traceable author statement /// 0030154 // cell differentiation // non-traceable author statement /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051965 // positive regulation of synapse assembly // inferred from electronic annotation /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031371 // ubiquitin conjugating enzyme complex // inferred from direct assay /// 0031372 // UBC13-MMS2 complex // inferred from direct assay /// 0035370 // UBC13-UEV1A complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -18.67 308.11 -0.76 0.47 0.55 -4.61
214305_s_at 214305_s_at AW003030 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW003030 /FEA=EST /DB_XREF=gi:5849868 /DB_XREF=est:wq61e04.x1 /CLONE=IMAGE:2475774 /UG=Hs.13453 splicing factor 3b, subunit 1, 155kD AW003030 splicing factor 3b, subunit 1, 155kDa SF3B1 23451 NM_001005526 /// NM_012433 /// XM_005246428 /// XR_241300 /// XR_241301 /// XR_241302 0000375 // RNA splicing, via transesterification reactions // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // non-traceable author statement /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -36.93 365.79 -0.76 0.47 0.55 -4.61
214754_at 214754_at AB007861 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB007861.1 /DEF=Homo sapiens KIAA0401 mRNA, partial cds. /FEA=mRNA /GEN=KIAA0401 /DB_XREF=gi:2662082 /UG=Hs.17803 KIAA0401 protein AB007861 tet methylcytosine dioxygenase 3 TET3 200424 NM_001287491 /// NM_144993 /// XM_005264187 /// XM_006711963 0006493 // protein O-linked glycosylation // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0044727 // DNA demethylation of male pronucleus // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0080111 // DNA demethylation // inferred from sequence or structural similarity /// 0080182 // histone H3-K4 trimethylation // inferred from mutant phenotype 0001939 // female pronucleus // inferred from electronic annotation /// 0001940 // male pronucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation /// 0070579 // methylcytosine dioxygenase activity // inferred from sequence or structural similarity -10.13 32.84 -0.76 0.47 0.55 -4.61
204420_at 204420_at BG251266 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG251266 /FEA=EST /DB_XREF=gi:12761082 /DB_XREF=est:602365892F1 /CLONE=IMAGE:4474055 /UG=Hs.283565 FOS-like antigen-1 /FL=gb:NM_005438.1 BG251266 FOS-like antigen 1 FOSL1 8061 NM_005438 /// XM_005274311 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006935 // chemotaxis // traceable author statement /// 0006968 // cellular defense response // traceable author statement /// 0007296 // vitellogenesis // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009615 // response to virus // traceable author statement /// 0009629 // response to gravity // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0032570 // response to progesterone // inferred from electronic annotation /// 0034097 // response to cytokine // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation /// 0060674 // placenta blood vessel development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 13.12 190.49 0.76 0.47 0.55 -4.61
49327_at 49327_at AI492888 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI492888:th78c09.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2124784 /clone_end=3' /gb=AI492888 /gi=4393891 /ug=Hs.19306 /len=596 AI492888 sirtuin 3 SIRT3 23410 NM_001017524 /// NM_012239 /// XM_005252835 0006471 // protein ADP-ribosylation // traceable author statement /// 0006476 // protein deacetylation // inferred from direct assay /// 0009060 // aerobic respiration // inferred from mutant phenotype /// 0034983 // peptidyl-lysine deacetylation // inferred from mutant phenotype /// 0070932 // histone H3 deacetylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003950 // NAD+ ADP-ribosyltransferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0032041 // NAD-dependent histone deacetylase activity (H3-K14 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation /// 0070403 // NAD+ binding // inferred from electronic annotation -10.83 148.24 -0.76 0.47 0.55 -4.61
221437_s_at 221437_s_at NM_031280 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031280.1 /DEF=Homo sapiens mitochondrial ribosomal protein S15 (MRPS15), mRNA. /FEA=CDS /GEN=MRPS15 /PROD=mitochondrial ribosomal protein S15 /DB_XREF=gi:13775191 /FL=gb:NM_031280.1 NM_031280 mitochondrial ribosomal protein S15 MRPS15 64960 NM_031280 0006412 // translation // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005763 // mitochondrial small ribosomal subunit // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 12.97 113.39 0.76 0.47 0.55 -4.61
203386_at 203386_at AI650848 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI650848 /FEA=EST /DB_XREF=gi:4734827 /DB_XREF=est:wa95d04.x1 /CLONE=IMAGE:2303911 /UG=Hs.173802 KIAA0603 gene product /FL=gb:AB011175.1 gb:NM_014832.1 AI650848 TBC1 domain family, member 4 TBC1D4 9882 NM_001286658 /// NM_001286659 /// NM_014832 /// XM_005266603 /// XM_005266605 /// XM_006719902 /// XM_006719903 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0031339 // negative regulation of vesicle fusion // inferred from electronic annotation /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 27.55 218.80 0.76 0.47 0.55 -4.61
200658_s_at 200658_s_at AL560017 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL560017 /FEA=EST /DB_XREF=gi:12906073 /DB_XREF=est:AL560017 /CLONE=CS0DG004YD08 (5 prime) /UG=Hs.75323 prohibitin /FL=gb:NM_002634.2 AL560017 prohibitin PHB 5245 NM_001281496 /// NM_001281497 /// NM_001281715 /// NM_002634 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006260 // DNA replication // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010944 // negative regulation of transcription by competitive promoter binding // inferred from direct assay /// 0016575 // histone deacetylation // inferred from direct assay /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0042981 // regulation of apoptotic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0050847 // progesterone receptor signaling pathway // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from mutant phenotype /// 0071354 // cellular response to interleukin-6 // inferred from direct assay /// 0071897 // DNA biosynthetic process // inferred from electronic annotation /// 2000323 // negative regulation of glucocorticoid receptor signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay -17.80 303.82 -0.76 0.47 0.55 -4.61
206200_s_at 206200_s_at NM_001157 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001157.1 /DEF=Homo sapiens annexin A11 (ANXA11), mRNA. /FEA=mRNA /GEN=ANXA11 /PROD=annexin XI /DB_XREF=gi:4557316 /UG=Hs.75510 annexin A11 /FL=gb:NM_001157.1 gb:L19605.1 NM_001157 annexin A11 ANXA11 311 NM_001157 /// NM_001278407 /// NM_001278408 /// NM_001278409 /// NM_145868 /// NM_145869 /// XM_005269741 /// XM_005269742 /// XM_006717813 /// XM_006717814 0006909 // phagocytosis // inferred from expression pattern /// 0007049 // cell cycle // inferred from electronic annotation /// 0007109 // cytokinesis, completion of separation // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // non-traceable author statement /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042581 // specific granule // inferred from direct assay /// 0042582 // azurophil granule // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0008429 // phosphatidylethanolamine binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0044548 // S100 protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 15.80 174.62 0.76 0.47 0.56 -4.61
209861_s_at 209861_s_at U13261 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U13261.1 /DEF=Homo sapiens eIF-2-associated p67 homolog mRNA, complete cds. /FEA=mRNA /PROD=eIF-2-associated p67 homolog /DB_XREF=gi:687242 /UG=Hs.78935 methionine aminopeptidase; eIF-2-associated p67 /FL=gb:U13261.1 U13261 methionyl aminopeptidase 2 METAP2 10988 NM_006838 /// XM_005268583 0006508 // proteolysis // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016485 // protein processing // inferred from direct assay /// 0018206 // peptidyl-methionine modification // inferred from direct assay /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0031365 // N-terminal protein amino acid modification // inferred from direct assay /// 0070084 // protein initiator methionine removal // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070006 // metalloaminopeptidase activity // inferred from electronic annotation -26.17 319.49 -0.75 0.48 0.56 -4.61
214752_x_at 214752_x_at AI625550 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI625550 /FEA=EST /DB_XREF=gi:4650481 /DB_XREF=est:ty57d06.x1 /CLONE=IMAGE:2283179 /UG=Hs.195464 filamin A, alpha (actin-binding protein-280) AI625550 filamin A, alpha FLNA 2316 NM_001110556 /// NM_001456 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0007195 // adenylate cyclase-inhibiting dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0034329 // cell junction assembly // traceable author statement /// 0034394 // protein localization to cell surface // inferred from direct assay /// 0042177 // negative regulation of protein catabolic process // inferred from mutant phenotype /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from mutant phenotype /// 0043113 // receptor clustering // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045184 // establishment of protein localization // inferred from direct assay /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0051220 // cytoplasmic sequestering of protein // inferred from mutant phenotype /// 0051764 // actin crosslink formation // inferred from direct assay /// 0090307 // spindle assembly involved in mitosis // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred by curator /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031523 // Myb complex // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097440 // apical dendrite // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0017048 // Rho GTPase binding // inferred from direct assay /// 0017160 // Ral GTPase binding // inferred from direct assay /// 0031267 // small GTPase binding // inferred from direct assay /// 0031852 // mu-type opioid receptor binding // inferred from electronic annotation /// 0034988 // Fc-gamma receptor I complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0048365 // Rac GTPase binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from direct assay -50.45 733.02 -0.75 0.48 0.56 -4.61
205091_x_at 205091_x_at NM_002907 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002907.1 /DEF=Homo sapiens RecQ protein-like (DNA helicase Q1-like) (RECQL), mRNA. /FEA=mRNA /GEN=RECQL /PROD=RecQ protein-like (DNA helicase Q1-like) /DB_XREF=gi:4506468 /UG=Hs.235069 RecQ protein-like (DNA helicase Q1-like) /FL=gb:NM_002907.1 gb:L36140.1 NM_002907 RecQ helicase-like RECQL 5965 NM_002907 /// NM_032941 /// XM_005253461 /// XM_005253462 /// XM_005253463 /// XM_005253464 /// XM_006719133 0000733 // DNA strand renaturation // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from direct assay /// 0004003 // ATP-dependent DNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036310 // annealing helicase activity // inferred from direct assay /// 0043140 // ATP-dependent 3'-5' DNA helicase activity // inferred from electronic annotation 13.35 107.20 0.75 0.48 0.56 -4.61
216384_x_at 216384_x_at AF257099 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF257099 /DEF=Homo sapiens prothymosin alpha (PTMA) gene, complete cds /FEA=CDS /DB_XREF=gi:8037944 /UG=Hs.283947 Homo sapiens prothymosin alpha (PTMA) gene, complete cds AF257099 prothymosin alpha-like /// prothymosin alpha-like /// microRNA 1244-1 /// microRNA 1244-2 /// microRNA 1244-3 /// prothymosin, alpha LOC100506248 /// LOC728026 /// MIR1244-1 /// MIR1244-2 /// MIR1244-3 /// PTMA 5757 /// 728026 /// 100302285 /// 100422872 /// 100422885 /// 100506248 NM_001099285 /// NM_002823 /// NR_036052 /// NR_036262 /// NR_036263 /// XM_001126659 /// XM_003960458 /// XM_005275719 /// XM_005276418 0006351 // transcription, DNA-templated // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay -114.70 1593.30 -0.75 0.48 0.56 -4.61
206127_at 206127_at NM_005230 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005230.1 /DEF=Homo sapiens ELK3, ETS-domain protein (SRF accessory protein 2) (ELK3), mRNA. /FEA=mRNA /GEN=ELK3 /PROD=ELK3 protein /DB_XREF=gi:4885202 /UG=Hs.121529 ELK3, ETS-domain protein (SRF accessory protein 2) /FL=gb:NM_005230.1 NM_005230 ELK3, ETS-domain protein (SRF accessory protein 2) ELK3 2004 NM_005230 /// XM_006719275 0001525 // angiogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007165 // signal transduction // traceable author statement /// 0030154 // cell differentiation // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0032422 // purine-rich negative regulatory element binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -11.27 79.94 -0.75 0.48 0.56 -4.61
202647_s_at 202647_s_at NM_002524 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002524.2 /DEF=Homo sapiens neuroblastoma RAS viral (v-ras) oncogene homolog (NRAS), mRNA. /FEA=mRNA /GEN=NRAS /PROD=neuroblastoma RAS viral (v-ras) oncogenehomolog /DB_XREF=gi:6006027 /UG=Hs.260523 neuroblastoma RAS viral (v-ras) oncogene homolog /FL=gb:BC005219.1 gb:NM_002524.2 NM_002524 neuroblastoma RAS viral (v-ras) oncogene homolog NRAS 4893 NM_002524 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007569 // cell aging // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008542 // visual learning // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0035022 // positive regulation of Rac protein signal transduction // inferred from electronic annotation /// 0035176 // social behavior // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051385 // response to mineralocorticoid // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0097193 // intrinsic apoptotic signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019002 // GMP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0030275 // LRR domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay -30.00 234.05 -0.75 0.48 0.56 -4.61
205412_at 205412_at NM_000019 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000019.1 /DEF=Homo sapiens acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) (ACAT1), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=ACAT1 /PROD=acetyl-Coenzyme A acetyltransferase 1 precursor /DB_XREF=gi:4557236 /UG=Hs.37 acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) /FL=gb:NM_000019.1 NM_000019 acetyl-CoA acetyltransferase 1 ACAT1 38 NM_000019 /// XM_006718834 /// XM_006718835 0001889 // liver development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched-chain amino acid catabolic process // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042594 // response to starvation // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046950 // cellular ketone body metabolic process // traceable author statement /// 0046951 // ketone body biosynthetic process // traceable author statement /// 0046952 // ketone body catabolic process // traceable author statement /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0060612 // adipose tissue development // inferred from electronic annotation /// 0072229 // metanephric proximal convoluted tubule development // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003985 // acetyl-CoA C-acetyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation -18.02 475.31 -0.75 0.48 0.56 -4.61
207132_x_at 207132_x_at NM_002624 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002624.1 /DEF=Homo sapiens prefoldin 5 (PFDN5), mRNA. /FEA=mRNA /GEN=PFDN5 /PROD=prefoldin 5 /DB_XREF=gi:4505742 /UG=Hs.288856 prefoldin 5 /FL=gb:D89667.1 gb:NM_002624.1 NM_002624 prefoldin subunit 5 PFDN5 5204 NM_002624 /// NM_145896 /// NM_145897 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006457 // protein folding // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0016272 // prefoldin complex // inferred from electronic annotation 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from electronic annotation 28.92 680.64 0.75 0.48 0.56 -4.61
201892_s_at 201892_s_at NM_000884 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000884.1 /DEF=Homo sapiens IMP (inosine monophosphate) dehydrogenase 2 (IMPDH2), mRNA. /FEA=mRNA /GEN=IMPDH2 /PROD=IMP (inosine monophosphate) dehydrogenase 2 /DB_XREF=gi:4504688 /UG=Hs.75432 IMP (inosine monophosphate) dehydrogenase 2 /FL=gb:J04208.1 gb:NM_000884.1 NM_000884 IMP (inosine 5'-monophosphate) dehydrogenase 2 IMPDH2 3615 NM_000884 /// XM_006713128 0006051 // N-acetylmannosamine metabolic process // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006177 // GMP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046651 // lymphocyte proliferation // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003938 // IMP dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018580 // nitronate monooxygenase activity // inferred from electronic annotation /// 0030554 // adenyl nucleotide binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047465 // N-acylglucosamine-6-phosphate 2-epimerase activity // inferred from electronic annotation -54.55 609.50 -0.75 0.48 0.56 -4.61
204629_at 204629_at NM_013327 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013327.1 /DEF=Homo sapiens CGI-56 protein (CGI-56), mRNA. /FEA=mRNA /GEN=CGI-56 /PROD=CGI-56 protein /DB_XREF=gi:7019346 /UG=Hs.8836 beta-parvin /FL=gb:AF237769.1 gb:AF151814.1 gb:NM_013327.1 NM_013327 parvin, beta PARVB 29780 NM_001003828 /// NM_001243385 /// NM_001243386 /// NM_013327 /// XM_005261593 /// XM_005261594 /// XM_005261595 /// XM_005261596 /// XM_006724236 0007155 // cell adhesion // inferred from electronic annotation /// 0030031 // cell projection assembly // inferred from mutant phenotype /// 0030032 // lamellipodium assembly // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0034329 // cell junction assembly // traceable author statement /// 0071963 // establishment or maintenance of cell polarity regulating cell shape // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -19.45 286.00 -0.75 0.48 0.56 -4.61
212781_at 212781_at AK026954 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026954.1 /DEF=Homo sapiens cDNA: FLJ23301 fis, clone HEP11120. /FEA=mRNA /DB_XREF=gi:10439935 /UG=Hs.91065 hypothetical protein DKFZp761B2423 AK026954 retinoblastoma binding protein 6 RBBP6 5930 NM_006910 /// NM_018703 /// NM_032626 /// XM_005255461 /// XM_005255462 0001701 // in utero embryonic development // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0061053 // somite development // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -14.10 114.22 -0.74 0.48 0.56 -4.61
39854_r_at 39854_r_at AF055000 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AF055000:Homo sapiens clone 24519 unknown mRNA, partial cds /cds=(0,1235) /gb=AF055000 /gi=3005716 /ug=Hs.118463 /len=1590 AF055000 patatin-like phospholipase domain containing 2 PNPLA2 57104 NM_020376 /// XM_003403858 /// XM_006718265 /// XM_006718266 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010891 // negative regulation of sequestering of triglyceride // inferred from direct assay /// 0010898 // positive regulation of triglyceride catabolic process // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0036155 // acylglycerol acyl-chain remodeling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -28.43 324.59 -0.74 0.48 0.56 -4.61
201816_s_at 201816_s_at NM_001483 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001483.1 /DEF=Homo sapiens glioblastoma amplified sequence (GBAS), mRNA. /FEA=mRNA /GEN=GBAS /PROD=glioblastoma amplified sequence /DB_XREF=gi:4503936 /UG=Hs.152707 glioblastoma amplified sequence /FL=gb:BC000732.1 gb:BC001837.1 gb:AF029786.1 gb:NM_001483.1 NM_001483 glioblastoma amplified sequence GBAS 2631 NM_001202469 /// NM_001483 0006119 // oxidative phosphorylation // inferred from mutant phenotype /// 0006754 // ATP biosynthetic process // inferred from mutant phenotype /// 2000984 // negative regulation of ATP citrate synthase activity // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction 16.90 273.90 0.74 0.48 0.56 -4.61
217769_s_at 217769_s_at NM_015932 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015932.1 /DEF=Homo sapiens hypothetical protein (HSPC014), mRNA. /FEA=mRNA /GEN=HSPC014 /PROD=hypothetical protein /DB_XREF=gi:7705428 /UG=Hs.279813 hypothetical protein /FL=gb:AF275807.1 gb:BC003390.1 gb:AF077200.1 gb:AF125097.1 gb:NM_015932.1 NM_015932 proteasome maturation protein POMP 51371 NM_015932 0043248 // proteasome assembly // inferred from mutant phenotype 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 53.97 987.51 0.74 0.48 0.56 -4.61
200086_s_at 200086_s_at AA854966 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA854966 /FEA=EST /DB_XREF=gi:2942504 /DB_XREF=est:aj70d12.s1 /CLONE=IMAGE:1401815 /UG=Hs.113205 cytochrome c oxidase subunit IV AA854966 cytochrome c oxidase subunit IV isoform 1 COX4I1 1327 NM_001861 /// XM_005255798 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0007584 // response to nutrient // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -32.00 599.83 -0.74 0.48 0.56 -4.61
210092_at 210092_at AF067173 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF067173.1 /DEF=Homo sapiens Mago homolog mRNA, complete cds. /FEA=mRNA /PROD=Mago homolog /DB_XREF=gi:4894379 /UG=Hs.57904 mago-nashi (Drosophila) homolog, proliferation-associated /FL=gb:AF035940.1 gb:AF067173.1 gb:NM_002370.2 AF067173 mago-nashi homolog, proliferation-associated (Drosophila) /// mago-nashi homolog B (Drosophila) MAGOH /// MAGOHB 4116 /// 55110 NM_002370 /// NM_018048 /// XM_005253402 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -18.17 233.34 -0.74 0.48 0.56 -4.61
211749_s_at 211749_s_at BC005941 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005941.1 /DEF=Homo sapiens, Similar to vesicle-associated membrane protein 3, clone MGC:14563, mRNA, complete cds. /FEA=mRNA /PROD=Similar to vesicle-associated membrane protein3 /DB_XREF=gi:13543573 /FL=gb:BC005941.1 BC005941 vesicle-associated membrane protein 3 VAMP3 9341 NM_004781 0001921 // positive regulation of receptor recycling // inferred from sequence or structural similarity /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // traceable author statement /// 0006904 // vesicle docking involved in exocytosis // traceable author statement /// 0006906 // vesicle fusion // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay /// 0043001 // Golgi to plasma membrane protein transport // inferred from electronic annotation /// 0061025 // membrane fusion // traceable author statement 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030141 // secretory granule // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043229 // intracellular organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay 0000149 // SNARE binding // not recorded /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from electronic annotation -41.93 868.99 -0.74 0.48 0.56 -4.61
202138_x_at 202138_x_at NM_006303 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006303.2 /DEF=Homo sapiens JTV1 gene (JTV1), mRNA. /FEA=mRNA /GEN=JTV1 /PROD=JTV1 /DB_XREF=gi:11125769 /UG=Hs.301613 JTV1 gene /FL=gb:NM_006303.2 gb:U24169.1 gb:BC002853.1 NM_006303 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 AIMP2 7965 NM_006303 /// XM_005249847 /// XM_005249848 /// XM_005249850 /// XM_006715772 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009605 // response to external stimulus // inferred from expression pattern /// 0010467 // gene expression // traceable author statement /// 0010999 // regulation of eIF2 alpha phosphorylation by heme // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0045993 // negative regulation of translational initiation by iron // non-traceable author statement /// 0046501 // protoporphyrinogen IX metabolic process // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046984 // regulation of hemoglobin biosynthetic process // inferred from electronic annotation /// 0046986 // negative regulation of hemoglobin biosynthetic process // inferred from electronic annotation /// 0046986 // negative regulation of hemoglobin biosynthetic process // inferred from sequence or structural similarity /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity -24.07 274.11 -0.74 0.48 0.56 -4.61
201318_s_at 201318_s_at NM_006471 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006471.1 /DEF=Homo sapiens myosin, light polypeptide, regulatory, non-sarcomeric (20kD) (MLCB), mRNA. /FEA=mRNA /GEN=MLCB /PROD=myosin, light polypeptide, regulatory,non-sarcomeric (20kD) /DB_XREF=gi:5453739 /UG=Hs.233936 myosin, light polypeptide, regulatory, non-sarcomeric (20kD) /FL=gb:NM_006471.1 NM_006471 myosin, light chain 12A, regulatory, non-sarcomeric /// myosin, light chain 12B, regulatory MYL12A /// MYL12B 10627 /// 103910 NM_001144944 /// NM_001144945 /// NM_001144946 /// NM_006471 /// NM_033546 /// XM_005258076 /// XM_005258077 /// XM_005258078 0006936 // muscle contraction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from electronic annotation 0001725 // stress fiber // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016459 // myosin complex // inferred from electronic annotation /// 0016460 // myosin II complex // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0035254 // glutamate receptor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -124.45 2222.65 -0.74 0.48 0.56 -4.61
201199_s_at 201199_s_at NM_002807 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002807.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 (PSMD1), mRNA. /FEA=mRNA /GEN=PSMD1 /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 1 /DB_XREF=gi:4506224 /UG=Hs.3887 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 /FL=gb:D44466.1 gb:NM_002807.1 NM_002807 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 PSMD1 5707 NM_001191037 /// NM_002807 /// NR_034059 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005838 // proteasome regulatory particle // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation 45.70 580.00 0.74 0.48 0.57 -4.61
211992_at 211992_at AI445745 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI445745 /FEA=EST /DB_XREF=gi:4290360 /DB_XREF=est:tj09e04.x1 /CLONE=IMAGE:2141022 /UG=Hs.184592 protein kinase, lysine deficient 1 /FL=gb:NM_018979.1 AI445745 WNK lysine deficient protein kinase 1 WNK1 65125 NM_001184985 /// NM_014823 /// NM_018979 /// NM_213655 /// XM_005253734 /// XM_005253735 /// XM_005253736 /// XM_005253737 /// XM_005253738 /// XM_005253739 /// XM_005253740 /// XM_005253741 /// XM_005253743 /// XM_006718998 /// XM_006718999 /// XM_006719000 /// XM_006719001 /// XM_006719002 /// XM_006719003 /// XM_006719004 0003084 // positive regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0010923 // negative regulation of phosphatase activity // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // traceable author statement /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0035556 // intracellular signal transduction // traceable author statement /// 0048666 // neuron development // non-traceable author statement /// 0050794 // regulation of cellular process // inferred from sequence or structural similarity /// 0090188 // negative regulation of pancreatic juice secretion // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019869 // chloride channel inhibitor activity // inferred from direct assay /// 0019902 // phosphatase binding // inferred from direct assay -10.58 123.01 -0.74 0.48 0.57 -4.61
218131_s_at 218131_s_at NM_017660 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017660.1 /DEF=Homo sapiens hypothetical protein FLJ20085 (FLJ20085), mRNA. /FEA=mRNA /GEN=FLJ20085 /PROD=hypothetical protein FLJ20085 /DB_XREF=gi:8923093 /UG=Hs.118964 hypothetical protein FLJ20085 /FL=gb:NM_017660.1 NM_017660 GATA zinc finger domain containing 2A GATAD2A 54815 NM_017660 /// XM_005259954 /// XM_005259956 /// XM_005259957 /// XM_005259958 /// XM_005259959 /// XM_005259960 /// XM_005259961 /// XM_005259962 /// XM_006722780 /// XM_006722781 0001568 // blood vessel development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001842 // neural fold formation // inferred from electronic annotation /// 0006306 // DNA methylation // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0010172 // embryonic body morphogenesis // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from electronic annotation /// 0021506 // anterior neuropore closure // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0016581 // NuRD complex // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 23.62 220.64 0.74 0.48 0.57 -4.61
216348_at 216348_at AL049693 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049693 /DEF=Human DNA sequence from clone RP4-753D5 on chromosome 6p12.1-12.3. Contains the 3 end of the TFAP2B gene for transcription factor AP-2 beta (activating enhancer-binding protein 2 beta), the gene for a novel protein similar to RPS17 (40S ribosomal... /FEA=mRNA_1 /DB_XREF=gi:7378744 /UG=Hs.283833 Human DNA sequence from clone RP4-753D5 on chromosome 6p12.1-12.3. Contains the 3 end of the TFAP2B gene for transcription factor AP-2 beta (activating enhancer-binding protein 2 beta), the gene for a novel protein similar to RPS17 (40S ribosomal protein AL049693 ribosomal protein S17 pseudogene 5 /// RPS17P5 /// RPS17P5 -47.50 238.80 -0.74 0.48 0.57 -4.61
201554_x_at 201554_x_at NM_004130 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004130.1 /DEF=Homo sapiens glycogenin (GYG), mRNA. /FEA=mRNA /GEN=GYG /PROD=glycogenin /DB_XREF=gi:4758491 /UG=Hs.174071 glycogenin /FL=gb:U44131.1 gb:BC000033.1 gb:NM_004130.1 gb:U31525.1 NM_004130 glycogenin 1 GYG1 2992 NM_001184720 /// NM_001184721 /// NM_004130 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005536 // glucose binding // inferred from electronic annotation /// 0008466 // glycogenin glucosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 15.40 269.25 0.74 0.48 0.57 -4.61
200723_s_at 200723_s_at NM_005898 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005898.1 /DEF=Homo sapiens membrane component, chromosome 11, surface marker 1 (M11S1), mRNA. /FEA=mRNA /GEN=M11S1 /PROD=membrane component, chromosome 11, surfacemarker 1 /DB_XREF=gi:5174502 /UG=Hs.278672 membrane component, chromosome 11, surface marker 1 /FL=gb:BC001731.1 gb:NM_005898.1 NM_005898 cell cycle associated protein 1 CAPRIN1 4076 NM_005898 /// NM_203364 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from sequence or structural similarity /// 0061003 // positive regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003723 // RNA binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay 46.52 1052.31 0.74 0.48 0.57 -4.61
211069_s_at 211069_s_at BC006462 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006462.1 /DEF=Homo sapiens, ubiquitin-like 1 (sentrin), clone MGC:2095, mRNA, complete cds. /FEA=mRNA /PROD=ubiquitin-like 1 (sentrin) /DB_XREF=gi:13623670 /FL=gb:BC006462.1 BC006462 small ubiquitin-like modifier 1 SUMO1 7341 NM_001005781 /// NM_001005782 /// NM_003352 0006281 // DNA repair // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0030578 // PML body organization // inferred from electronic annotation /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0032880 // regulation of protein localization // traceable author statement /// 0043392 // negative regulation of DNA binding // inferred from mutant phenotype /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0060021 // palate development // inferred from sequence or structural similarity /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0090204 // protein localization to nuclear pore // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 17.23 499.04 0.74 0.48 0.57 -4.61
202933_s_at 202933_s_at NM_005433 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005433.1 /DEF=Homo sapiens v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 (YES1), mRNA. /FEA=mRNA /GEN=YES1 /PROD=v-yes-1 Yamaguchi sarcoma viral oncogene homolog1 /DB_XREF=gi:4885660 /UG=Hs.194148 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 /FL=gb:NM_005433.1 NM_005433 YES proto-oncogene 1, Src family tyrosine kinase YES1 7525 NM_005433 /// XM_005258139 0006464 // cellular protein modification process // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015758 // glucose transport // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043114 // regulation of vascular permeability // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004715 // non-membrane spanning protein tyrosine kinase activity // traceable author statement /// 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0044325 // ion channel binding // inferred from physical interaction 23.40 296.75 0.74 0.49 0.57 -4.61
222235_s_at 222235_s_at AL139812 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL139812 /DEF=Human DNA sequence from clone RP1-19N1 on chromosome Xq21.33-22.3 Contains a gene for a novel protein. Contains ESTs, STSs and GSSs /FEA=mRNA /DB_XREF=gi:9187185 /UG=Hs.287761 Human DNA sequence from clone RP1-19N1 on chromosome Xq21.33-22.3 Contains a gene for a novel protein. Contains ESTs, STSs and GSSs AL139812 chondroitin sulfate N-acetylgalactosaminyltransferase 2 CSGALNACT2 55454 NM_018590 /// XM_005271819 /// XM_005271820 /// XM_005271821 0005975 // carbohydrate metabolic process // traceable author statement /// 0030166 // proteoglycan biosynthetic process // inferred from direct assay /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050650 // chondroitin sulfate proteoglycan biosynthetic process // inferred from direct assay /// 0050651 // dermatan sulfate proteoglycan biosynthetic process // inferred from direct assay /// 0050652 // dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // traceable author statement /// 0050653 // chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // non-traceable author statement /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008376 // acetylgalactosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047237 // glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation 13.80 121.65 0.73 0.49 0.57 -4.61
202560_s_at 202560_s_at NM_015607 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015607.1 /DEF=Homo sapiens DKFZP547E1010 protein (DKFZP547E1010), mRNA. /FEA=mRNA /GEN=DKFZP547E1010 /PROD=DKFZP547E1010 protein /DB_XREF=gi:7661589 /UG=Hs.323817 DKFZP547E1010 protein /FL=gb:NM_015607.1 NM_015607 chromatin target of PRMT1 CHTOP 26097 NM_001206612 /// NM_001244664 /// NM_015607 /// XM_005245085 /// XM_005245086 /// XM_006711269 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051096 // positive regulation of helicase activity // inferred from direct assay 0000346 // transcription export complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 11.15 231.10 0.73 0.49 0.57 -4.61
209121_x_at 209121_x_at M64497 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M64497.1 /DEF=Human apolipoprotein AI regulatory protein (ARP-1) mRNA, complete cds. /FEA=mRNA /GEN=ARP-1 /PROD=apolipoprotein AI regulatory protein-1 /DB_XREF=gi:179023 /UG=Hs.288869 nuclear receptor subfamily 2, group F, member 2 /FL=gb:M64497.1 M64497 nuclear receptor subfamily 2, group F, member 2 NR2F2 7026 NM_001145155 /// NM_001145156 /// NM_001145157 /// NM_021005 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001893 // maternal placenta development // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006629 // lipid metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0009956 // radial pattern formation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010596 // negative regulation of endothelial cell migration // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0021796 // cerebral cortex regionalization // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // inferred from direct assay /// 0030522 // intracellular receptor signaling pathway // inferred from electronic annotation /// 0030522 // intracellular receptor signaling pathway // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement 0001972 // retinoic acid binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred by curator /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0004879 // ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044323 // retinoic acid-responsive element binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -47.67 634.59 -0.73 0.49 0.57 -4.61
212590_at 212590_at AI431643 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI431643 /FEA=EST /DB_XREF=gi:4304619 /DB_XREF=est:tg74f12.x1 /CLONE=IMAGE:2114543 /UG=Hs.206097 oncogene TC21 AI431643 related RAS viral (r-ras) oncogene homolog 2 RRAS2 22800 NM_001102669 /// NM_001177314 /// NM_001177315 /// NM_012250 0001649 // osteoblast differentiation // inferred from direct assay /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation -24.33 364.36 -0.73 0.49 0.57 -4.61
214880_x_at 214880_x_at D90453 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D90453.1 /DEF=Human mRNA for l-caldesmon II. /FEA=mRNA /DB_XREF=gi:219897 /UG=Hs.325474 caldesmon 1 D90453 caldesmon 1 CALD1 800 NM_004342 /// NM_033138 /// NM_033139 /// NM_033140 /// NM_033157 /// XM_006716136 /// XM_006716137 /// XM_006716138 /// XM_006716139 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030478 // actin cap // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // traceable author statement /// 0017022 // myosin binding // inferred from electronic annotation -18.15 69.92 -0.73 0.49 0.57 -4.61
203387_s_at 203387_s_at NM_014832 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014832.1 /DEF=Homo sapiens KIAA0603 gene product (KIAA0603), mRNA. /FEA=mRNA /GEN=KIAA0603 /PROD=KIAA0603 gene product /DB_XREF=gi:7662197 /UG=Hs.173802 KIAA0603 gene product /FL=gb:AB011175.1 gb:NM_014832.1 NM_014832 TBC1 domain family, member 4 TBC1D4 9882 NM_001286658 /// NM_001286659 /// NM_014832 /// XM_005266603 /// XM_005266605 /// XM_006719902 /// XM_006719903 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0031339 // negative regulation of vesicle fusion // inferred from electronic annotation /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 13.45 271.70 0.73 0.49 0.57 -4.61
211708_s_at 211708_s_at BC005807 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005807.1 /DEF=Homo sapiens, clone MGC:10264, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:10264) /DB_XREF=gi:13543283 /FL=gb:BC005807.1 BC005807 stearoyl-CoA desaturase (delta-9-desaturase) SCD 6319 NM_005063 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation -18.95 69.38 -0.73 0.49 0.57 -4.61
202372_at 202372_at BF240652 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF240652 /FEA=EST /DB_XREF=gi:11154576 /DB_XREF=est:601875908F1 /CLONE=IMAGE:4099824 /UG=Hs.197289 rab3 GTPase-activating protein, non-catalytic subunit (150kD) /FL=gb:AF255648.1 gb:AF004828.1 gb:NM_012414.1 BF240652 aurora kinase A pseudogene 1 /// RAB3 GTPase activating protein subunit 2 (non-catalytic) AURKAPS1 /// RAB3GAP2 6791 /// 25782 NM_012414 /// NR_001587 0006886 // intracellular protein transport // traceable author statement /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0043087 // regulation of GTPase activity // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // traceable author statement /// 0030234 // enzyme regulator activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity 21.65 145.25 0.73 0.49 0.57 -4.61
218461_at 218461_at NM_016301 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016301.1 /DEF=Homo sapiens protein x 0004 (LOC51184), mRNA. /FEA=mRNA /GEN=LOC51184 /PROD=protein x 0004 /DB_XREF=gi:9994188 /UG=Hs.284164 protein x 0004 /FL=gb:AF117229.1 gb:NM_016301.1 NM_016301 GPN-loop GTPase 3 GPN3 51184 NM_001164372 /// NM_001164373 /// NM_016301 /// XM_005253896 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 9.78 82.49 0.73 0.49 0.57 -4.61
211675_s_at 211675_s_at AF054589 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF054589.1 /DEF=Homo sapiens HIC protein isoform p40 and HIC protein isoform p32 mRNAs, complete cds. /FEA=mRNA /PROD=HIC protein isoform p32; HIC protein isoform p40 /DB_XREF=gi:3426297 /FL=gb:AF054589.1 AF054589 MyoD family inhibitor domain containing MDFIC 29969 NM_001166345 /// NM_001166346 /// NM_199072 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030111 // regulation of Wnt signaling pathway // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042308 // negative regulation of protein import into nucleus // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0050434 // positive regulation of viral transcription // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0072588 // box H/ACA RNP complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0030332 // cyclin binding // inferred from physical interaction /// 0030515 // snoRNA binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from direct assay 14.02 101.54 0.73 0.49 0.57 -4.61
209219_at 209219_at L03411 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L03411.1 /DEF=Human RD protein (RD) mRNA, complete cds. /FEA=mRNA /GEN=RD /PROD=RD protein /DB_XREF=gi:190973 /UG=Hs.106061 RD RNA-binding protein /FL=gb:L03411.1 gb:NM_002904.1 L03411 microRNA 1236 /// negative elongation factor complex member E MIR1236 /// NELFE 7936 /// 100302242 NM_002904 /// NR_031601 /// XM_006715205 /// XM_006725521 /// XM_006725739 /// XM_006725936 /// XM_006726037 /// XM_006726125 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006414 // translational elongation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0034244 // negative regulation of transcription elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0032021 // NELF complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 12.30 105.60 0.73 0.49 0.57 -4.61
217804_s_at 217804_s_at BC003086 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003086.1 /DEF=Homo sapiens, hypothetical protein FLJ20011, clone MGC:1080, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein FLJ20011 /DB_XREF=gi:13111838 /UG=Hs.256583 interleukin enhancer binding factor 3, 90kD /FL=gb:BC003086.1 gb:NM_004516.1 gb:U10324.1 gb:AF167570.1 gb:NM_012218.1 BC003086 interleukin enhancer binding factor 3, 90kDa ILF3 3609 NM_001137673 /// NM_004516 /// NM_012218 /// NM_017620 /// NM_153464 /// XM_005259895 /// XM_006722742 0000279 // M phase // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0045071 // negative regulation of viral genome replication // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 19.25 211.45 0.73 0.49 0.57 -4.61
200078_s_at 200078_s_at BC005876 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005876.1 /DEF=Homo sapiens, ATPase, H+ transporting, lysosomal (vacuolar proton pump) 21kD, clone MGC:4498, mRNA, complete cds. /FEA=mRNA /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) 21kD /DB_XREF=gi:13543437 /FL=gb:BC005876.1 BC005876 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b ATP6V0B 533 NM_001039457 /// NM_001294333 /// NM_004047 /// XM_005270944 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0033572 // transferrin transport // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005768 // endosome // inferred from electronic annotation /// 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation 0005215 // transporter activity // traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 19.02 311.11 0.72 0.49 0.57 -4.61
211600_at 211600_at U20489 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U20489.1 /DEF=Human glomerular epithelial protein 1 (GLEPP1) mRNA, complete cds. /FEA=mRNA /GEN=GLEPP1 /PROD=glomerular epithelial protein 1 /DB_XREF=gi:885925 /FL=gb:U20489.1 U20489 protein tyrosine phosphatase, receptor type, O PTPRO 5800 NM_002848 /// NM_030667 /// NM_030668 /// NM_030669 /// NM_030670 /// NM_030671 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0002548 // monocyte chemotaxis // inferred from mutant phenotype /// 0003093 // regulation of glomerular filtration // inferred from sequence or structural similarity /// 0003105 // negative regulation of glomerular filtration // inferred from sequence or structural similarity /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0006470 // protein dephosphorylation // traceable author statement /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0010812 // negative regulation of cell-substrate adhesion // inferred from sequence or structural similarity /// 0010977 // negative regulation of neuron projection development // inferred from sequence or structural similarity /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0030032 // lamellipodium assembly // inferred from sequence or structural similarity /// 0032835 // glomerulus development // inferred from mutant phenotype /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 0036060 // slit diaphragm assembly // inferred from sequence or structural similarity /// 0036060 // slit diaphragm assembly // non-traceable author statement /// 0042773 // ATP synthesis coupled electron transport // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0072112 // glomerular visceral epithelial cell differentiation // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0090260 // negative regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016328 // lateral plasma membrane // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030424 // axon // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043197 // dendritic spine // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from sequence or structural similarity /// 0017147 // Wnt-protein binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity -155.30 711.80 -0.72 0.49 0.57 -4.61
200983_x_at 200983_x_at BF983379 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF983379 /FEA=EST /DB_XREF=gi:12386191 /DB_XREF=est:602305270F1 /CLONE=IMAGE:4396576 /UG=Hs.119663 CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344) /FL=gb:NM_000611.1 gb:M34671.1 BF983379 CD59 molecule, complement regulatory protein CD59 966 NM_000611 /// NM_001127223 /// NM_001127225 /// NM_001127226 /// NM_001127227 /// NM_203329 /// NM_203330 /// NM_203331 0001775 // cell activation // not recorded /// 0001971 // negative regulation of activation of membrane attack complex // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030449 // regulation of complement activation // traceable author statement /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation /// 0031362 // anchored component of external side of plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043218 // compact myelin // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001848 // complement binding // not recorded /// 0005515 // protein binding // inferred from physical interaction 55.65 2331.80 0.72 0.49 0.57 -4.61
204246_s_at 204246_s_at NM_007234 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007234.2 /DEF=Homo sapiens dynactin 3 (p22) (DCTN3), transcript variant 1, mRNA. /FEA=mRNA /GEN=DCTN3 /PROD=dynactin 3, isoform 1 /DB_XREF=gi:13259516 /UG=Hs.15961 dynactin 3 (p22) /FL=gb:NM_007234.2 gb:AF082513.1 NM_007234 dynactin 3 (p22) DCTN3 11258 NM_001281425 /// NM_001281426 /// NM_001281427 /// NM_007234 /// NM_024348 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000910 // cytokinesis // inferred from direct assay /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005869 // dynactin complex // inferred from physical interaction /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 21.15 341.35 0.72 0.49 0.57 -4.61
212025_s_at 212025_s_at BG421186 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG421186 /FEA=EST /DB_XREF=gi:13327692 /DB_XREF=est:602451665F1 /CLONE=IMAGE:4589873 /UG=Hs.83849 flightless I (Drosophila) homolog BG421186 flightless I homolog (Drosophila) FLII 2314 NM_001256264 /// NM_001256265 /// NM_002018 /// XM_005256555 /// XM_005256556 /// XM_005256558 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -14.75 143.55 -0.72 0.49 0.57 -4.61
210298_x_at 210298_x_at AF098518 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF098518.1 /DEF=Homo sapiens four and a half LIM domains 1 protein isoform B (FHL1) mRNA, complete cds. /FEA=mRNA /GEN=FHL1 /PROD=four and a half LIM domains 1 protein isoform B /DB_XREF=gi:3851649 /UG=Hs.239069 four and a half LIM domains 1 /FL=gb:AF098518.1 gb:AF063002.1 AF098518 four and a half LIM domains 1 FHL1 2273 NM_001159699 /// NM_001159700 /// NM_001159701 /// NM_001159702 /// NM_001159703 /// NM_001159704 /// NM_001167819 /// NM_001449 /// NR_027621 /// XM_006724743 /// XM_006724744 /// XM_006724745 /// XM_006724746 /// XM_006724747 0003254 // regulation of membrane depolarization // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // non-traceable author statement /// 0009887 // organ morphogenesis // non-traceable author statement /// 0010972 // negative regulation of G2/M transition of mitotic cell cycle // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 1901016 // regulation of potassium ion transmembrane transporter activity // inferred from direct assay /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -15.12 95.74 -0.72 0.49 0.57 -4.61
203082_at 203082_at NM_014753 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014753.1 /DEF=Homo sapiens KIAA0187 gene product (KIAA0187), mRNA. /FEA=mRNA /GEN=KIAA0187 /PROD=KIAA0187 gene product /DB_XREF=gi:7661979 /UG=Hs.10848 KIAA0187 gene product /FL=gb:D80009.1 gb:NM_014753.1 NM_014753 BMS1 ribosome biogenesis factor BMS1 9790 NM_014753 /// XM_005271846 /// XM_005271847 /// XM_005271848 /// XM_005271849 /// XM_006718081 /// XR_246522 /// XR_428728 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042255 // ribosome assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 27.05 311.82 0.72 0.49 0.57 -4.61
212159_x_at 212159_x_at AI125280 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI125280 /FEA=EST /DB_XREF=gi:3593794 /DB_XREF=est:qd92c05.x1 /CLONE=IMAGE:1736936 /UG=Hs.19121 adaptor-related protein complex 2, alpha 2 subunit AI125280 adaptor-related protein complex 2, alpha 2 subunit AP2A2 161 NM_001242837 /// NM_012305 /// XM_006718159 /// XM_006718160 /// XR_242779 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // non-traceable author statement /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from sequence or structural similarity 23.73 347.99 0.72 0.49 0.57 -4.61
206567_s_at 206567_s_at NM_016436 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016436.1 /DEF=Homo sapiens hepatocellular carcinoma-associated antigen 58 (LOC51230), mRNA. /FEA=mRNA /GEN=LOC51230 /PROD=hepatocellular carcinoma-associated antigen 58 /DB_XREF=gi:7705990 /UG=Hs.301055 hepatocellular carcinoma-associated antigen 58 /FL=gb:AF220416.1 gb:NM_016436.1 NM_016436 PHD finger protein 20 PHF20 51230 NM_016436 /// XM_005260421 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043981 // histone H4-K5 acetylation // inferred from direct assay /// 0043982 // histone H4-K8 acetylation // inferred from direct assay /// 0043984 // histone H4-K16 acetylation // inferred from direct assay 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0071339 // MLL1 complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043995 // histone acetyltransferase activity (H4-K5 specific) // inferred from direct assay /// 0043996 // histone acetyltransferase activity (H4-K8 specific) // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046972 // histone acetyltransferase activity (H4-K16 specific) // inferred from direct assay -11.37 104.99 -0.72 0.50 0.58 -4.61
218021_at 218021_at NM_021004 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021004.1 /DEF=Homo sapiens peroxisomal short-chain alcohol dehydrogenase (SCAD-SRL), mRNA. /FEA=mRNA /GEN=SCAD-SRL /PROD=peroxisomal short-chain alcohol dehydrogenase /DB_XREF=gi:10337604 /UG=Hs.6318 peroxisomal short-chain alcohol dehydrogenase /FL=gb:NM_021004.1 gb:AB045131.1 gb:BC003019.1 gb:AF044127.1 NM_021004 dehydrogenase/reductase (SDR family) member 4 /// dehydrogenase/reductase (SDR family) member 4 like 2 DHRS4 /// DHRS4L2 10901 /// 317749 NM_001193635 /// NM_001193636 /// NM_001193637 /// NM_001282987 /// NM_001282988 /// NM_001282989 /// NM_001282990 /// NM_001282991 /// NM_021004 /// NM_198083 /// XM_006720005 /// XM_006720006 0006066 // alcohol metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from direct assay /// 0042180 // cellular ketone metabolic process // inferred from direct assay /// 0051262 // protein tetramerization // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0055114 // oxidation-reduction process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000253 // 3-keto sterol reductase activity // inferred from direct assay /// 0004090 // carbonyl reductase (NADPH) activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016655 // oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor // inferred from direct assay /// 0018455 // alcohol dehydrogenase [NAD(P)+] activity // inferred from direct assay -13.42 98.71 -0.71 0.50 0.58 -4.61
208113_x_at 208113_x_at NM_030979 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030979.1 /DEF=Homo sapiens testis-specific poly(A)-binding protein (PABP) (LOC81874), mRNA. /FEA=mRNA /GEN=LOC81874 /PROD=testis-specific poly(A)-binding protein (PABP) /DB_XREF=gi:13569957 /FL=gb:NM_030979.1 NM_030979 poly(A) binding protein, cytoplasmic 3 PABPC3 5042 NM_030979 0016071 // mRNA metabolic process // non-traceable author statement 0005737 // cytoplasm // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008143 // poly(A) binding // inferred from direct assay 81.28 932.16 0.71 0.50 0.58 -4.61
200085_s_at 200085_s_at NM_007108 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_007108.1 /DEF=Homo sapiens transcription elongation factor B (SIII), polypeptide 2 (18kD, elongin B) (TCEB2), mRNA. /FEA=CDS /GEN=TCEB2 /PROD=elongin B /DB_XREF=gi:6005889 /UG=Hs.172772 transcription elongation factor B (SIII), polypeptide 2 (18kD, elongin B) /FL=gb:NM_007108.1 gb:L42856.1 NM_007108 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) TCEB2 6923 NM_007108 /// NM_207013 /// XM_006720937 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006414 // translational elongation // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0050434 // positive regulation of viral transcription // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0031462 // Cul2-RING ubiquitin ligase complex // inferred from direct assay /// 0031466 // Cul5-RING ubiquitin ligase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070449 // elongin complex // inferred from electronic annotation 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay -20.77 465.69 -0.71 0.50 0.58 -4.61
201600_at 201600_at NM_007273 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007273.1 /DEF=Homo sapiens B-cell associated protein (REA), mRNA. /FEA=mRNA /GEN=REA /PROD=B-cell associated protein /DB_XREF=gi:6005853 /UG=Hs.7771 B-cell associated protein /FL=gb:AF150962.1 gb:NM_007273.1 gb:AF126021.1 gb:AF178980.1 NM_007273 prohibitin 2 PHB2 11331 NM_001144831 /// NM_001267700 /// XR_242980 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0033147 // negative regulation of intracellular estrogen receptor signaling pathway // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // non-traceable author statement -92.60 1321.45 -0.71 0.50 0.58 -4.61
200746_s_at 200746_s_at NM_002074 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002074.1 /DEF=Homo sapiens guanine nucleotide binding protein (G protein), beta polypeptide 1 (GNB1), mRNA. /FEA=mRNA /GEN=GNB1 /PROD=guanine nucleotide binding protein (G protein),beta polypeptide 1 /DB_XREF=gi:11321584 /UG=Hs.215595 guanine nucleotide binding protein (G protein), beta polypeptide 1 /FL=gb:NM_002074.1 gb:BC004186.1 NM_002074 guanine nucleotide binding protein (G protein), beta polypeptide 1 GNB1 2782 NM_001282538 /// NM_001282539 /// NM_002074 0006112 // energy reserve metabolic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006184 // GTP catabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007213 // G-protein coupled acetylcholine receptor signaling pathway // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005622 // intracellular // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from electronic annotation /// 0042622 // photoreceptor outer segment membrane // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097381 // photoreceptor disc membrane // traceable author statement 0003924 // GTPase activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0051020 // GTPase binding // inferred from physical interaction -53.05 1031.65 -0.70 0.50 0.58 -4.61
215482_s_at 215482_s_at AJ011307 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AJ011307 /DEF=Homo sapiens eIF2B delta subunit gene, exons 1-11 /FEA=CDS_2 /DB_XREF=gi:6012056 /UG=Hs.169474 DKFZP586J0119 protein AJ011307 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa EIF2B4 8890 NM_001034116 /// NM_015636 /// NM_172195 /// XM_005264632 /// XM_006712132 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // non-traceable author statement /// 0006446 // regulation of translational initiation // not recorded /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009408 // response to heat // traceable author statement /// 0009749 // response to glucose // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0014003 // oligodendrocyte development // inferred from mutant phenotype /// 0019509 // L-methionine salvage from methylthioadenosine // not recorded /// 0032057 // negative regulation of translational initiation in response to stress // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from mutant phenotype /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043087 // regulation of GTPase activity // inferred from mutant phenotype /// 0043434 // response to peptide hormone // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from mutant phenotype /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045947 // negative regulation of translational initiation // not recorded /// 0051716 // cellular response to stimulus // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 0003743 // translation initiation factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from sequence or structural similarity /// 0046523 // S-methyl-5-thioribose-1-phosphate isomerase activity // not recorded 14.22 153.59 0.70 0.50 0.58 -4.61
218398_at 218398_at NM_016640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016640.1 /DEF=Homo sapiens programmed cell death 9 (PDCD9), mRNA. /FEA=mRNA /GEN=PDCD9 /PROD=(HSA)PAP protein /DB_XREF=gi:7706187 /UG=Hs.28555 programmed cell death 9 /FL=gb:AL136706.1 gb:BC002460.1 gb:AF146192.2 gb:AF217523.1 gb:NM_016640.1 NM_016640 mitochondrial ribosomal protein S30 MRPS30 10884 NM_016640 0006412 // translation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -22.52 166.71 -0.70 0.50 0.59 -4.61
200060_s_at 200060_s_at BC001659 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001659.1 /DEF=Homo sapiens, RNA-binding protein S1, serine-rich domain, clone MGC:1125, mRNA, complete cds. /FEA=mRNA /PROD=RNA-binding protein S1, serine-rich domain /DB_XREF=gi:12804496 /UG=Hs.75104 RNA-binding protein S1, serine-rich domain /FL=gb:BC001659.1 gb:BC001838.1 BC001659 RNA binding protein S1, serine-rich domain RNPS1 10921 NM_001286625 /// NM_001286626 /// NM_001286627 /// NM_006711 /// NM_080594 /// NR_104485 /// XM_005255048 /// XM_005255049 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from direct assay /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // traceable author statement /// 0061574 // ASAP complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003729 // mRNA binding // non-traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 42.80 696.90 0.70 0.50 0.59 -4.61
200950_at 200950_at NM_006409 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006409.1 /DEF=Homo sapiens actin related protein 23 complex, subunit 1A (41 kD) (ARPC1A), mRNA. /FEA=mRNA /GEN=ARPC1A /PROD=actin related protein 23 complex, subunit 1A(41 kD) /DB_XREF=gi:5454077 /UG=Hs.90370 actin related protein 23 complex, subunit 1A (41 kD) /FL=gb:NM_006409.1 NM_006409 actin related protein 2/3 complex, subunit 1A, 41kDa ARPC1A 10552 NM_001190996 /// NM_006409 0030036 // actin cytoskeleton organization // traceable author statement /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 43.65 604.85 0.70 0.51 0.59 -4.61
201162_at 201162_at NM_001553 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001553.1 /DEF=Homo sapiens insulin-like growth factor binding protein 7 (IGFBP7), mRNA. /FEA=mRNA /GEN=IGFBP7 /PROD=insulin-like growth factor binding protein 7 /DB_XREF=gi:4504618 /UG=Hs.119206 insulin-like growth factor binding protein 7 /FL=gb:L19182.1 gb:NM_001553.1 NM_001553 insulin-like growth factor binding protein 7 IGFBP7 3490 NM_001253835 /// NM_001553 0001558 // regulation of cell growth // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from direct assay /// 0007566 // embryo implantation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009408 // response to heat // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation /// 0051414 // response to cortisol // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation -74.33 1708.69 -0.70 0.51 0.59 -4.61
201482_at 201482_at NM_002826 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002826.2 /DEF=Homo sapiens quiescin Q6 (QSCN6), mRNA. /FEA=mRNA /GEN=QSCN6 /PROD=quiescin Q6 /DB_XREF=gi:13325074 /UG=Hs.77266 quiescin Q6 /FL=gb:L42379.1 gb:U97276.2 gb:NM_002826.2 NM_002826 quiescin Q6 sulfhydryl oxidase 1 QSOX1 5768 NM_001004128 /// NM_002826 0006457 // protein folding // inferred from direct assay /// 0006457 // protein folding // inferred from genetic interaction /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // inferred from direct assay /// 0003756 // protein disulfide isomerase activity // inferred from genetic interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016971 // flavin-linked sulfhydryl oxidase activity // inferred from direct assay /// 0016971 // flavin-linked sulfhydryl oxidase activity // inferred from genetic interaction /// 0016972 // thiol oxidase activity // inferred from electronic annotation -21.50 322.15 -0.70 0.51 0.59 -4.61
218853_s_at 218853_s_at NM_019556 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019556.1 /DEF=Homo sapiens hypothetical protein dJ473B4 (DJ473B4), mRNA. /FEA=mRNA /GEN=DJ473B4 /PROD=hypothetical protein dJ473B4 /DB_XREF=gi:9506542 /UG=Hs.57549 hypothetical protein dJ473B4 /FL=gb:NM_019556.1 NM_019556 motile sperm domain containing 1 MOSPD1 56180 NM_019556 /// XM_005262446 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005198 // structural molecule activity // inferred from electronic annotation 15.55 172.43 0.70 0.51 0.59 -4.61
212716_s_at 212716_s_at AW083133 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW083133 /FEA=EST /DB_XREF=gi:6038285 /DB_XREF=est:xc06e03.x1 /CLONE=IMAGE:2583484 /UG=Hs.324925 LATS (large tumor suppressor, Drosophila) homolog 1 AW083133 eukaryotic translation initiation factor 3, subunit K EIF3K 27335 NM_013234 /// XM_006723147 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from electronic annotation 22.50 503.77 0.70 0.51 0.59 -4.61
208710_s_at 208710_s_at AI424923 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI424923 /FEA=EST /DB_XREF=gi:4270841 /DB_XREF=est:tg19a07.x1 /CLONE=IMAGE:2109204 /UG=Hs.75056 adaptor-related protein complex 3, delta 1 subunit /FL=gb:AF002163.1 AI424923 adaptor-related protein complex 3, delta 1 subunit AP3D1 8943 NM_001077523 /// NM_001261826 /// NM_003938 /// XM_006722932 0006726 // eye pigment biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032438 // melanosome organization // inferred by curator /// 0033365 // protein localization to organelle // inferred from electronic annotation /// 0035646 // endosome to melanosome transport // inferred from mutant phenotype /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // inferred from electronic annotation /// 0048490 // anterograde synaptic vesicle transport // inferred from sequence or structural similarity /// 0048499 // synaptic vesicle membrane organization // inferred from electronic annotation /// 0051138 // positive regulation of NK T cell differentiation // inferred from electronic annotation /// 0061088 // regulation of sequestering of zinc ion // inferred from mutant phenotype /// 0072657 // protein localization to membrane // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005794 // Golgi apparatus // traceable author statement /// 0010008 // endosome membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043195 // terminal bouton // inferred from electronic annotation 0005215 // transporter activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 10.88 41.21 0.70 0.51 0.59 -4.61
211282_x_at 211282_x_at U94506 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U94506.1 /DEF=Human lymphocyte associated receptor of death 5 mRNA, alternatively spliced, complete cds. /FEA=mRNA /PROD=lymphocyte associated receptor of death 5 /DB_XREF=gi:2071958 /UG=Hs.180338 tumor necrosis factor receptor superfamily, member 12 (translocating chain-association membrane protein) /FL=gb:U94506.1 U94506 tumor necrosis factor receptor superfamily, member 25 TNFRSF25 8718 NM_001039664 /// NM_003790 /// NM_148965 /// NM_148966 /// NM_148967 /// NM_148968 /// NM_148969 /// NM_148970 /// NM_148974 0006915 // apoptotic process // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0033209 // tumor necrosis factor-mediated signaling pathway // traceable author statement /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004872 // receptor activity // non-traceable author statement /// 0005031 // tumor necrosis factor-activated receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 10.90 88.67 0.70 0.51 0.59 -4.61
201120_s_at 201120_s_at AL547946 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL547946 /FEA=EST /DB_XREF=gi:12882489 /DB_XREF=est:AL547946 /CLONE=CS0DI035YB22 (5 prime) /UG=Hs.90061 progesterone binding protein /FL=gb:NM_006667.2 AL547946 progesterone receptor membrane component 1 PGRMC1 10857 NM_001282621 /// NM_006667 0007411 // axon guidance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation -19.60 135.10 -0.70 0.51 0.59 -4.61
203912_s_at 203912_s_at NM_006730 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006730.1 /DEF=Homo sapiens deoxyribonuclease I-like 1 (DNASE1L1), mRNA. /FEA=mRNA /GEN=DNASE1L1 /PROD=deoxyribonuclease I-like 1 /DB_XREF=gi:5803006 /UG=Hs.77091 deoxyribonuclease I-like 1 /FL=gb:U06846.1 gb:NM_006730.1 NM_006730 deoxyribonuclease I-like 1 DNASE1L1 1774 NM_001009932 /// NM_001009933 /// NM_001009934 /// NM_006730 /// XM_005277829 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0006259 // DNA metabolic process // traceable author statement /// 0006308 // DNA catabolic process // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004536 // deoxyribonuclease activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016888 // endodeoxyribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation 15.25 105.40 0.69 0.51 0.59 -4.61
204257_at 204257_at NM_021727 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021727.1 /DEF=Homo sapiens fatty acid desaturase 3 (FADS3), mRNA. /FEA=mRNA /GEN=FADS3 /PROD=fatty acid desaturase 3 /DB_XREF=gi:13375615 /UG=Hs.21765 fatty acid desaturase 3 /FL=gb:AF084560.1 gb:NM_021727.1 gb:BC004901.1 gb:AF134404.1 NM_021727 fatty acid desaturase 3 FADS3 3995 NM_021727 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // non-traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation -25.88 244.86 -0.69 0.51 0.59 -4.61
217814_at 217814_at NM_020198 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020198.1 /DEF=Homo sapiens GK001 protein (GK001), mRNA. /FEA=mRNA /GEN=GK001 /PROD=GK001 protein /DB_XREF=gi:9910241 /UG=Hs.8207 GK001 protein /FL=gb:AF113221.1 gb:BC001300.1 gb:AF226054.1 gb:NM_020198.1 NM_020198 coiled-coil domain containing 47 CCDC47 57003 NM_020198 /// XM_005257527 0001649 // osteoblast differentiation // inferred from direct assay /// 0006983 // ER overload response // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 13.78 245.19 0.69 0.51 0.59 -4.61
221485_at 221485_at AL035683 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL035683 /DEF=Human DNA sequence from clone RP5-1063B2 on chromosome 20q13.1-13.2. Contains the 3 part of the gene for Beta-1,4-galactosyltransferase, ESTs, STSs and GSSs /FEA=mRNA /DB_XREF=gi:7288039 /UG=Hs.107526 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 /FL=gb:AB004550.1 gb:AF038663.1 gb:NM_004776.1 AL035683 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 B4GALT5 9334 NM_004776 0005975 // carbohydrate metabolic process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0016266 // O-glycan processing // traceable author statement /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008378 // galactosyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -11.42 293.11 -0.69 0.51 0.59 -4.61
200087_s_at 200087_s_at AK024976 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024976.1 /DEF=Homo sapiens cDNA: FLJ21323 fis, clone COL02374. /FEA=mRNA /DB_XREF=gi:10437405 /UG=Hs.75914 Homo sapiens cDNA: FLJ21323 fis, clone COL02374 AK024976 transmembrane emp24 domain trafficking protein 2 TMED2 10959 NM_006815 /// XM_005253544 0001893 // maternal placenta development // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from direct assay /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0034260 // negative regulation of GTPase activity // inferred from direct assay /// 0035459 // cargo loading into vesicle // traceable author statement /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0030137 // COPI-coated vesicle // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 60.88 1126.31 0.69 0.51 0.59 -4.61
202223_at 202223_at NM_002219 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002219.1 /DEF=Homo sapiens integral membrane protein 1 (ITM1), mRNA. /FEA=mRNA /GEN=ITM1 /PROD=integral membrane protein 1 /DB_XREF=gi:4504786 /UG=Hs.287850 integral membrane protein 1 /FL=gb:NM_002219.1 gb:L38961.1 NM_002219 STT3A, subunit of the oligosaccharyltransferase complex (catalytic) STT3A 3703 NM_001278503 /// NM_001278504 /// NM_152713 0006486 // protein glycosylation // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // inferred from mutant phenotype /// 0018279 // protein N-linked glycosylation via asparagine // inferred from sequence or structural similarity /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0043686 // co-translational protein modification // inferred from mutant phenotype /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0008250 // oligosaccharyltransferase complex // inferred from sequence or structural similarity /// 0008250 // oligosaccharyltransferase complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004576 // oligosaccharyl transferase activity // inferred from electronic annotation /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from mutant phenotype /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 16.63 168.01 0.69 0.51 0.59 -4.61
211936_at 211936_at AF216292 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF216292.1 /DEF=Homo sapiens endoplasmic reticulum lumenal Ca2+ binding protein grp78 mRNA, complete cds. /FEA=CDS /PROD=endoplasmic reticulum lumenal Ca2+ bindingprotein grp78 /DB_XREF=gi:7229461 /UG=Hs.75410 heat shock 70kD protein 5 (glucose-regulated protein, 78kD) /FL=gb:AF216292.1 AF216292 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) HSPA5 3309 NM_005347 0000902 // cell morphogenesis // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006983 // ER overload response // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0021589 // cerebellum structural organization // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0030168 // platelet activation // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0035437 // maintenance of protein localization in endoplasmic reticulum // inferred from mutant phenotype /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation /// 0060904 // regulation of protein folding in endoplasmic reticulum // traceable author statement /// 0071236 // cellular response to antibiotic // inferred from electronic annotation /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0008180 // COP9 signalosome // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0034663 // endoplasmic reticulum chaperone complex // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from physical interaction /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030674 // protein binding, bridging // non-traceable author statement /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // traceable author statement /// 0051087 // chaperone binding // traceable author statement /// 0051787 // misfolded protein binding // inferred from direct assay 80.68 2175.41 0.69 0.51 0.59 -4.61
208703_s_at 208703_s_at BG427393 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG427393 /FEA=EST /DB_XREF=gi:13333995 /DB_XREF=est:602499110F1 /CLONE=IMAGE:4612562 /UG=Hs.279518 amyloid beta (A4) precursor-like protein 2 /FL=gb:BC000373.1 BG427393 amyloid beta (A4) precursor-like protein 2 APLP2 334 NM_001142276 /// NM_001142277 /// NM_001142278 /// NM_001243299 /// NM_001642 /// NR_024515 /// NR_024516 0001967 // suckling behavior // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // non-traceable author statement /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046914 // transition metal ion binding // inferred from electronic annotation -46.12 969.51 -0.69 0.51 0.59 -4.61
216274_s_at 216274_s_at N99438 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N99438 /FEA=EST /DB_XREF=gi:1270864 /DB_XREF=est:yz96c06.r1 /CLONE=IMAGE:290890 /UG=Hs.9534 signal peptidase complex (18kD) N99438 SEC11 homolog A (S. cerevisiae) SEC11A 23478 NM_001271918 /// NM_001271919 /// NM_001271920 /// NM_001271921 /// NM_001271922 /// NM_014300 /// NR_073518 0006412 // translation // traceable author statement /// 0006465 // signal peptide processing // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -43.95 814.90 -0.69 0.51 0.59 -4.61
220945_x_at 220945_x_at NM_018050 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018050.1 /DEF=Homo sapiens hypothetical protein FLJ10298 (FLJ10298), mRNA. /FEA=mRNA /GEN=FLJ10298 /PROD=hypothetical protein FLJ10298 /DB_XREF=gi:8922334 /UG=Hs.5999 hypothetical protein FLJ10298 /FL=gb:NM_018050.1 NM_018050 MANSC domain containing 1 MANSC1 54682 NM_018050 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 31.90 180.57 0.69 0.51 0.59 -4.61
200844_s_at 200844_s_at BE869583 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE869583 /FEA=EST /DB_XREF=gi:10318463 /DB_XREF=est:601445695F1 /CLONE=IMAGE:3849815 /UG=Hs.120 anti-oxidant protein 2 (non-selenium glutathione peroxidase, acidic calcium-independent phospholipase A2) /FL=gb:D14662.1 gb:NM_004905.1 BE869583 peroxiredoxin 6 PRDX6 9588 NM_004905 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016209 // antioxidant activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 30.78 714.29 0.69 0.51 0.59 -4.61
217950_at 217950_at NM_015953 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015953.1 /DEF=Homo sapiens CGI-25 protein (LOC51070), mRNA. /FEA=mRNA /GEN=LOC51070 /PROD=CGI-25 protein /DB_XREF=gi:7705715 /UG=Hs.7236 CGI-25 protein /FL=gb:AF132959.1 gb:NM_015953.1 NM_015953 nitric oxide synthase interacting protein NOSIP 51070 NM_001270960 /// NM_015953 /// XM_005258964 /// XM_006723235 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from direct assay 0000139 // Golgi membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -18.25 120.75 -0.69 0.51 0.59 -4.61
201122_x_at 201122_x_at BC000751 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000751.1 /DEF=Homo sapiens, eukaryotic translation initiation factor 5A, clone MGC:2453, mRNA, complete cds. /FEA=mRNA /PROD=eukaryotic translation initiation factor 5A /DB_XREF=gi:12653914 /UG=Hs.119140 eukaryotic translation initiation factor 5A /FL=gb:BC000751.1 gb:BC001832.1 gb:M23419.1 gb:NM_001970.1 BC000751 eukaryotic translation initiation factor 5A EIF5A 1984 NM_001143760 /// NM_001143761 /// NM_001143762 /// NM_001970 /// XM_005256509 0006406 // mRNA export from nucleus // inferred from mutant phenotype /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation /// 0006452 // translational frameshifting // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008612 // peptidyl-lysine modification to peptidyl-hypusine // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045901 // positive regulation of translational elongation // inferred from sequence or structural similarity /// 0045905 // positive regulation of translational termination // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005642 // annulate lamellae // inferred from direct assay /// 0005643 // nuclear pore // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003746 // translation elongation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0017070 // U6 snRNA binding // inferred from direct assay /// 0043022 // ribosome binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction -11.83 147.91 -0.69 0.51 0.59 -4.61
204219_s_at 204219_s_at NM_002802 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002802.1 /DEF=Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 1 (PSMC1), mRNA. /FEA=mRNA /GEN=PSMC1 /PROD=proteasome (prosome, macropain) 26S subunit,ATPase, 1 /DB_XREF=gi:4506206 /UG=Hs.4745 proteasome (prosome, macropain) 26S subunit, ATPase, 1 /FL=gb:L02426.1 gb:NM_002802.1 NM_002802 proteasome (prosome, macropain) 26S subunit, ATPase, 1 PSMC1 5700 NM_002802 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement 0000502 // proteasome complex // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0017025 // TBP-class protein binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -22.60 742.62 -0.69 0.51 0.59 -4.61
215230_x_at 215230_x_at AA679705 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA679705 /FEA=EST /DB_XREF=gi:2660227 /DB_XREF=est:ah15e04.s1 /CLONE=IMAGE:1156734 /UG=Hs.4835 eukaryotic translation initiation factor 3, subunit 8 (110kD) AA679705 eukaryotic translation initiation factor 3, subunit C /// eukaryotic translation initiation factor 3, subunit C-like EIF3C /// EIF3CL 8663 /// 728689 NM_001037808 /// NM_001099661 /// NM_001199142 /// NM_001267574 /// NM_001286478 /// NM_003752 /// XM_005255535 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 98.60 717.10 0.69 0.51 0.59 -4.61
203085_s_at 203085_s_at BC000125 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000125.1 /DEF=Homo sapiens, Similar to transforming growth factor, beta 1, clone MGC:3119, mRNA, complete cds. /FEA=mRNA /PROD=Similar to transforming growth factor, beta 1 /DB_XREF=gi:12652748 /UG=Hs.1103 transforming growth factor, beta 1 /FL=gb:NM_000660.1 gb:BC000125.1 gb:BC001180.1 gb:M38449.1 BC000125 transforming growth factor, beta 1 TGFB1 7040 NM_000660 0000060 // protein import into nucleus, translocation // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000165 // MAPK cascade // inferred from mutant phenotype /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001775 // cell activation // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0002028 // regulation of sodium ion transport // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from direct assay /// 0002244 // hematopoietic progenitor cell differentiation // inferred from direct assay /// 0002248 // connective tissue replacement involved in inflammatory response wound healing // traceable author statement /// 0002460 // adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains // inferred from electronic annotation /// 0002513 // tolerance induction to self antigen // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006611 // protein export from nucleus // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from direct assay /// 0006796 // phosphate-containing compound metabolic process // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007093 // mitotic cell cycle checkpoint // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007182 // common-partner SMAD protein phosphorylation // inferred from direct assay /// 0007183 // SMAD protein complex assembly // inferred from direct assay /// 0007184 // SMAD protein import into nucleus // inferred from direct assay /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // inferred from expression pattern /// 0007492 // endoderm development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007568 // aging // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008354 // germ cell migration // inferred from electronic annotation /// 0009314 // response to radiation // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0009749 // response to glucose // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009817 // defense response to fungus, incompatible interaction // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // traceable author statement /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010716 // negative regulation of extracellular matrix disassembly // inferred by curator /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from direct assay /// 0010718 // positive regulation of epithelial to mesenchymal transition // non-traceable author statement /// 0010742 // macrophage derived foam cell differentiation // inferred by curator /// 0010763 // positive regulation of fibroblast migration // inferred from direct assay /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0010936 // negative regulation of macrophage cytokine production // inferred from direct assay /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016049 // cell growth // inferred from electronic annotation /// 0016202 // regulation of striated muscle tissue development // inferred from sequence or structural similarity /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // traceable author statement /// 0019049 // evasion or tolerance of host defenses by virus // inferred from direct assay /// 0019058 // viral life cycle // traceable author statement /// 0022408 // negative regulation of cell-cell adhesion // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030214 // hyaluronan catabolic process // inferred from direct assay /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030334 // regulation of cell migration // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030501 // positive regulation of bone mineralization // inferred from expression pattern /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030879 // mammary gland development // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031334 // positive regulation of protein complex assembly // inferred from direct assay /// 0031536 // positive regulation of exit from mitosis // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from direct assay /// 0032270 // positive regulation of cellular protein metabolic process // inferred from direct assay /// 0032355 // response to estradiol // inferred from direct assay /// 0032570 // response to progesterone // inferred from direct assay /// 0032740 // positive regulation of interleukin-17 production // inferred from direct assay /// 0032801 // receptor catabolic process // inferred from direct assay /// 0032930 // positive regulation of superoxide anion generation // inferred from direct assay /// 0032943 // mononuclear cell proliferation // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // inferred from direct assay /// 0032967 // positive regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0034616 // response to laminar fluid shear stress // inferred from electronic annotation /// 0035066 // positive regulation of histone acetylation // inferred from electronic annotation /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0040007 // growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from electronic annotation /// 0042110 // T cell activation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042306 // regulation of protein import into nucleus // inferred from sequence or structural similarity /// 0042307 // positive regulation of protein import into nucleus // inferred from direct assay /// 0042482 // positive regulation of odontogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043491 // protein kinase B signaling // inferred from mutant phenotype /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043552 // positive regulation of phosphatidylinositol 3-kinase activity // inferred from direct assay /// 0043932 // ossification involved in bone remodeling // inferred from expression pattern /// 0045066 // regulatory T cell differentiation // inferred from electronic annotation /// 0045216 // cell-cell junction organization // inferred from direct assay /// 0045599 // negative regulation of fat cell differentiation // inferred from direct assay /// 0045662 // negative regulation of myoblast differentiation // inferred from direct assay /// 0045786 // negative regulation of cell cycle // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046732 // active induction of host immune response by virus // traceable author statement /// 0048298 // positive regulation of isotype switching to IgA isotypes // inferred from direct assay /// 0048535 // lymph node development // inferred from sequence or structural similarity /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048642 // negative regulation of skeletal muscle tissue development // inferred from direct assay /// 0048839 // inner ear development // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from direct assay /// 0050765 // negative regulation of phagocytosis // inferred from electronic annotation /// 0050777 // negative regulation of immune response // inferred from electronic annotation /// 0050868 // negative regulation of T cell activation // inferred from electronic annotation /// 0050921 // positive regulation of chemotaxis // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051098 // regulation of binding // inferred from sequence or structural similarity /// 0051101 // regulation of DNA binding // inferred from sequence or structural similarity /// 0051152 // positive regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0060312 // regulation of blood vessel remodeling // inferred by curator /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060364 // frontal suture morphogenesis // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0060391 // positive regulation of SMAD protein import into nucleus // inferred from direct assay /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060751 // branch elongation involved in mammary gland duct branching // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0061035 // regulation of cartilage development // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070723 // response to cholesterol // inferred from direct assay /// 0071158 // positive regulation of cell cycle arrest // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from direct assay /// 0071549 // cellular response to dexamethasone stimulus // inferred from electronic annotation /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from direct assay /// 0085029 // extracellular matrix assembly // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay /// 1900126 // negative regulation of hyaluronan biosynthetic process // inferred from direct assay /// 1901203 // positive regulation of extracellular matrix assembly // inferred by curator /// 1901666 // positive regulation of NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 2000628 // regulation of miRNA metabolic process // inferred from direct assay /// 2000679 // positive regulation of transcription regulatory region DNA binding // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005902 // microvillus // inferred from direct assay /// 0009986 // cell surface // inferred from mutant phenotype /// 0030141 // secretory granule // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0072562 // blood microparticle // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0003823 // antigen binding // inferred from physical interaction /// 0005114 // type II transforming growth factor beta receptor binding // inferred from direct assay /// 0005114 // type II transforming growth factor beta receptor binding // inferred from physical interaction /// 0005125 // cytokine activity // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation 17.27 387.64 0.68 0.51 0.59 -4.61
202118_s_at 202118_s_at AA541758 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA541758 /FEA=EST /DB_XREF=gi:2288192 /DB_XREF=est:ni87d05.s1 /CLONE=IMAGE:983817 /UG=Hs.14158 copine III /FL=gb:AB014536.1 gb:NM_003909.1 gb:AF077226.2 AA541758 copine III CPNE3 8895 NM_003909 /// XM_005251093 0006468 // protein phosphorylation // inferred from direct assay /// 0006629 // lipid metabolic process // traceable author statement /// 0016192 // vesicle-mediated transport // traceable author statement 0005737 // cytoplasm // non-traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005215 // transporter activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 21.33 160.39 0.68 0.52 0.60 -4.61
217969_at 217969_at NM_013265 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013265.2 /DEF=Homo sapiens chromosome 11 open reading frame2 (C11ORF2), mRNA. /FEA=mRNA /GEN=C11ORF2 /PROD=chromosome 11 open reading frame2 /DB_XREF=gi:8393008 /UG=Hs.5258 chromosome 11 open reading frame2 /FL=gb:AF024631.2 gb:NM_013265.2 NM_013265 vacuolar protein sorting 51 homolog (S. cerevisiae) VPS51 738 NM_013265 /// NR_073519 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006893 // Golgi to plasma membrane transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from mutant phenotype /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from direct assay 0000145 // exocyst // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000938 // GARP complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016021 // integral component of membrane // traceable author statement /// 0017119 // Golgi transport complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -26.08 232.06 -0.68 0.52 0.60 -4.61
206875_s_at 206875_s_at NM_014720 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014720.1 /DEF=Homo sapiens Ste20-related serinethreonine kinase (KIAA0204), mRNA. /FEA=mRNA /GEN=KIAA0204 /PROD=Ste20-related serinethreonine kinase /DB_XREF=gi:7661993 /UG=Hs.105751 Ste20-related serinethreonine kinase /FL=gb:D86959.1 gb:NM_014720.1 NM_014720 STE20-like kinase SLK 9748 NM_014720 /// XM_005270301 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023014 // signal transduction by phosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay -9.57 149.61 -0.68 0.52 0.60 -4.61
209390_at 209390_at AF013168 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF013168.1 /DEF=Homo sapiens hamartin (TSC1) mRNA, complete cds. /FEA=mRNA /GEN=TSC1 /PROD=hamartin /DB_XREF=gi:2331280 /UG=Hs.79393 tuberous sclerosis 1 (hamartin) /FL=gb:AF013168.1 gb:NM_000368.1 AF013168 tuberous sclerosis 1 TSC1 7248 NM_000368 /// NM_001008567 /// NM_001162426 /// NM_001162427 /// XM_005272211 /// XM_006717271 /// XM_006717272 0001822 // kidney development // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001952 // regulation of cell-matrix adhesion // inferred from mutant phenotype /// 0006407 // rRNA export from nucleus // inferred from mutant phenotype /// 0006417 // regulation of translation // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007160 // cell-matrix adhesion // inferred from mutant phenotype /// 0007399 // nervous system development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0032007 // negative regulation of TOR signaling // inferred from mutant phenotype /// 0032862 // activation of Rho GTPase activity // inferred from direct assay /// 0032868 // response to insulin // inferred from direct assay /// 0032956 // regulation of actin cytoskeleton organization // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from mutant phenotype /// 0045792 // negative regulation of cell size // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051492 // regulation of stress fiber assembly // inferred from direct assay /// 0051726 // regulation of cell cycle // not recorded /// 0051893 // regulation of focal adhesion assembly // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // inferred from direct assay /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005884 // actin filament // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0033596 // TSC1-TSC2 complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030695 // GTPase regulator activity // not recorded /// 0032794 // GTPase activating protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 10.20 104.33 0.68 0.52 0.60 -4.61
201315_x_at 201315_x_at NM_006435 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006435.1 /DEF=Homo sapiens interferon induced transmembrane protein 2 (1-8D) (IFITM2), mRNA. /FEA=mRNA /GEN=IFITM2 /PROD=interferon induced transmembrane protein 2(1-8D) /DB_XREF=gi:10835237 /UG=Hs.174195 interferon induced transmembrane protein 2 (1-8D) /FL=gb:NM_006435.1 NM_006435 interferon induced transmembrane protein 2 IFITM2 10581 NM_006435 0002376 // immune system process // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0009607 // response to biotic stimulus // inferred from electronic annotation /// 0009615 // response to virus // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0035455 // response to interferon-alpha // inferred from direct assay /// 0035456 // response to interferon-beta // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045087 // innate immune response // inferred from electronic annotation /// 0046597 // negative regulation of viral entry into host cell // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060337 // type I interferon signaling pathway // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 25.87 1044.49 0.68 0.52 0.60 -4.61
209429_x_at 209429_x_at AF112207 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF112207.1 /DEF=Homo sapiens translation initiation factor eIF-2b delta subunit mRNA, complete cds. /FEA=mRNA /PROD=translation initiation factor eIF-2b deltasubunit /DB_XREF=gi:6563201 /UG=Hs.169474 DKFZP586J0119 protein /FL=gb:BC001870.1 gb:AF112207.1 AF112207 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa EIF2B4 8890 NM_001034116 /// NM_015636 /// NM_172195 /// XM_005264632 /// XM_006712132 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // non-traceable author statement /// 0006446 // regulation of translational initiation // not recorded /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009408 // response to heat // traceable author statement /// 0009749 // response to glucose // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0014003 // oligodendrocyte development // inferred from mutant phenotype /// 0019509 // L-methionine salvage from methylthioadenosine // not recorded /// 0032057 // negative regulation of translational initiation in response to stress // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from mutant phenotype /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043087 // regulation of GTPase activity // inferred from mutant phenotype /// 0043434 // response to peptide hormone // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from mutant phenotype /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045947 // negative regulation of translational initiation // not recorded /// 0051716 // cellular response to stimulus // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 0003743 // translation initiation factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from sequence or structural similarity /// 0046523 // S-methyl-5-thioribose-1-phosphate isomerase activity // not recorded -10.65 172.10 -0.68 0.52 0.60 -4.61
204435_at 204435_at NM_014778 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014778.1 /DEF=Homo sapiens KIAA0410 gene product (KIAA0410), mRNA. /FEA=mRNA /GEN=KIAA0410 /PROD=KIAA0410 gene product /DB_XREF=gi:7662097 /UG=Hs.55075 KIAA0410 gene product /FL=gb:AB007870.1 gb:NM_014778.1 NM_014778 nucleoporin like 1 NUPL1 9818 NM_001008564 /// NM_001008565 /// NM_014089 /// XM_005266600 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005487 // nucleocytoplasmic transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 13.20 80.83 0.68 0.52 0.60 -4.61
200761_s_at 200761_s_at NM_006407 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006407.2 /DEF=Homo sapiens vitamin A responsive; cytoskeleton related (JWA), mRNA. /FEA=mRNA /GEN=JWA /PROD=vitamin A responsive; cytoskeleton related /DB_XREF=gi:7669496 /UG=Hs.92384 vitamin A responsive; cytoskeleton related /FL=gb:BC005143.1 gb:AF070523.1 gb:AF125530.1 gb:AF161476.1 gb:NM_006407.2 NM_006407 ADP-ribosylation factor-like 6 interacting protein 5 ARL6IP5 10550 NM_006407 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from direct assay /// 0010917 // negative regulation of mitochondrial membrane potential // inferred from mutant phenotype /// 0015813 // L-glutamate transport // inferred from sequence or structural similarity /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0051051 // negative regulation of transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation 45.85 670.55 0.68 0.52 0.60 -4.61
218408_at 218408_at NM_012456 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012456.1 /DEF=Homo sapiens translocase of inner mitochondrial membrane 10 (yeast) homolog (TIMM10), mRNA. /FEA=mRNA /GEN=TIMM10 /PROD=translocase of inner mitochondrial membrane 10(yeast) homolog /DB_XREF=gi:6912707 /UG=Hs.109571 translocase of inner mitochondrial membrane 10 (yeast) homolog /FL=gb:AF150089.1 gb:AF152354.1 gb:NM_012456.1 NM_012456 translocase of inner mitochondrial membrane 10 homolog (yeast) TIMM10 26519 NM_012456 0006626 // protein targeting to mitochondrion // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045039 // protein import into mitochondrial inner membrane // inferred from direct assay /// 0045039 // protein import into mitochondrial inner membrane // inferred from sequence or structural similarity /// 0072321 // chaperone-mediated protein transport // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005744 // mitochondrial inner membrane presequence translocase complex // traceable author statement /// 0005758 // mitochondrial intermembrane space // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from direct assay 0005215 // transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from physical interaction 17.70 250.45 0.68 0.52 0.60 -4.61
208717_at 208717_at BC001669 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001669.1 /DEF=Homo sapiens, Similar to oxidase (cytochrome c) assembly 1-like, clone MGC:2171, mRNA, complete cds. /FEA=mRNA /PROD=Similar to oxidase (cytochrome c) assembly1-like /DB_XREF=gi:12804516 /UG=Hs.151134 oxidase (cytochrome c) assembly 1-like /FL=gb:BC001669.1 gb:NM_005015.1 BC001669 oxidase (cytochrome c) assembly 1-like OXA1L 5018 NM_005015 0006461 // protein complex assembly // non-traceable author statement /// 0009060 // aerobic respiration // inferred from mutant phenotype /// 0009060 // aerobic respiration // non-traceable author statement /// 0032780 // negative regulation of ATPase activity // inferred from mutant phenotype /// 0032981 // mitochondrial respiratory chain complex I assembly // inferred from mutant phenotype /// 0033615 // mitochondrial proton-transporting ATP synthase complex assembly // inferred from mutant phenotype /// 0051205 // protein insertion into membrane // inferred from electronic annotation /// 0051262 // protein tetramerization // inferred from direct assay /// 0051354 // negative regulation of oxidoreductase activity // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // non-traceable author statement /// 0097031 // mitochondrial respiratory chain complex I biogenesis // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005746 // mitochondrial respiratory chain // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0032592 // integral component of mitochondrial membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0097177 // mitochondrial ribosome binding // inferred from direct assay -19.40 443.75 -0.68 0.52 0.60 -4.61
210966_x_at 210966_x_at BC001460 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001460.1 /DEF=Homo sapiens, Similar to hypothetical protein FLJ10378, clone MGC:2954, mRNA, complete cds. /FEA=mRNA /PROD=Similar to hypothetical protein FLJ10378 /DB_XREF=gi:12655204 /UG=Hs.6214 KIAA0731 protein /FL=gb:BC001460.1 BC001460 La ribonucleoprotein domain family, member 1 LARP1 23367 NM_015315 /// NM_033551 /// XM_005268404 /// XM_005268406 /// XM_005268407 /// XM_005268408 /// XM_006714775 /// XM_006714776 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0016239 // positive regulation of macroautophagy // inferred from mutant phenotype /// 0031929 // TOR signaling // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0031931 // TORC1 complex // inferred from direct assay 0000339 // RNA cap binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction /// 0008494 // translation activator activity // inferred from mutant phenotype /// 0031369 // translation initiation factor binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay 15.95 313.23 0.68 0.52 0.60 -4.61
216438_s_at 216438_s_at AL133228 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL133228 /DEF=Human DNA sequence from clone RP5-1071L10 on chromosome 20 Contains part of a gene for a new member of the thymosininterferon-inducible multigene family, ESTs, STSs and GSSs /FEA=mRNA /DB_XREF=gi:8217426 /UG=Hs.288031 sterol-C5-desaturase (fungal ERG3, delta-5-desaturase)-like AL133228 thymosin beta 4, X-linked TMSB4X 7114 NM_021109 0002576 // platelet degranulation // traceable author statement /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0042989 // sequestering of actin monomers // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 136.33 3232.26 0.68 0.52 0.60 -4.61
212454_x_at 212454_x_at AI762552 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI762552 /FEA=EST /DB_XREF=gi:5178219 /DB_XREF=est:wh92e10.x1 /CLONE=IMAGE:2388234 /UG=Hs.170311 heterogeneous nuclear ribonucleoprotein D-like AI762552 heterogeneous nuclear ribonucleoprotein D-like HNRNPDL 9987 NM_001207000 /// NM_005463 /// NM_031372 /// NR_003249 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // non-traceable author statement /// 0010468 // regulation of gene expression // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0008143 // poly(A) binding // inferred from direct assay /// 0034046 // poly(G) binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -36.00 298.23 -0.67 0.52 0.60 -4.61
210250_x_at 210250_x_at AF067854 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF067854.1 /DEF=Homo sapiens adenylosuccinate lyase (ADSL) mRNA, alternatively spliced, complete cds. /FEA=mRNA /GEN=ADSL /PROD=adenylosuccinate lyase /DB_XREF=gi:3211983 /UG=Hs.75527 adenylosuccinate lyase /FL=gb:AF067854.1 AF067854 adenylosuccinate lyase ADSL 158 NM_000026 /// NM_001123378 0001666 // response to hypoxia // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006163 // purine nucleotide metabolic process // inferred from electronic annotation /// 0006164 // purine nucleotide biosynthetic process // inferred by curator /// 0006167 // AMP biosynthetic process // inferred from direct assay /// 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008152 // metabolic process // inferred from direct assay /// 0009060 // aerobic respiration // inferred from electronic annotation /// 0009152 // purine ribonucleotide biosynthetic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0014850 // response to muscle activity // inferred from electronic annotation /// 0042594 // response to starvation // inferred from electronic annotation /// 0044208 // 'de novo' AMP biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051262 // protein tetramerization // inferred from direct assay /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004018 // N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity // inferred from direct assay /// 0004018 // N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0070626 // (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity // inferred from electronic annotation 23.90 326.62 0.67 0.52 0.60 -4.61
200840_at 200840_at NM_005548 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005548.1 /DEF=Homo sapiens lysyl-tRNA synthetase (KARS), mRNA. /FEA=mRNA /GEN=KARS /PROD=lysyl-tRNA synthetase /DB_XREF=gi:5031814 /UG=Hs.3100 lysyl-tRNA synthetase /FL=gb:BC004132.1 gb:D32053.1 gb:NM_005548.1 NM_005548 lysyl-tRNA synthetase KARS 3735 NM_001130089 /// NM_005548 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006430 // lysyl-tRNA aminoacylation // inferred from direct assay /// 0008033 // tRNA processing // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from electronic annotation 0000049 // tRNA binding // non-traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004824 // lysine-tRNA ligase activity // inferred from direct assay /// 0004824 // lysine-tRNA ligase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 33.03 1306.29 0.67 0.52 0.60 -4.61
215222_x_at 215222_x_at AK023406 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK023406.1 /DEF=Homo sapiens cDNA FLJ13344 fis, clone OVARC1002050, highly similar to Homo sapiens mRNA for actin binding protein ABP620. /FEA=mRNA /DB_XREF=gi:10435330 /UG=Hs.321395 Homo sapiens cDNA FLJ13344 fis, clone OVARC1002050, highly similar to Homo sapiens mRNA for actin binding protein ABP620 AK023406 microtubule-actin crosslinking factor 1 MACF1 23499 NM_012090 /// NM_033044 /// XM_005270694 /// XM_005270695 /// XM_005270696 /// XM_005270697 /// XM_005270698 /// XM_005270700 /// XM_006710519 /// XM_006710520 /// XM_006710521 /// XM_006710522 /// XM_006710523 /// XM_006710524 /// XM_006710525 /// XM_006710526 /// XM_006710527 /// XM_006710528 /// XM_006710529 /// XM_006710530 /// XM_006710531 /// XM_006710532 /// XM_006710533 /// XM_006710534 /// XM_006710535 /// XM_006710536 /// XM_006710537 /// XM_006710538 /// XM_006710539 /// XM_006710540 0001707 // mesoderm formation // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006620 // posttranslational protein targeting to membrane // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0010632 // regulation of epithelial cell migration // inferred from sequence or structural similarity /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0043001 // Golgi to plasma membrane protein transport // inferred from direct assay /// 0051893 // regulation of focal adhesion assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // non-traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // non-traceable author statement -54.68 355.81 -0.67 0.52 0.60 -4.61
202196_s_at 202196_s_at NM_013253 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013253.1 /DEF=Homo sapiens dickkopf (Xenopus laevis) homolog 3 (DKK3), mRNA. /FEA=mRNA /GEN=DKK3 /PROD=Dickkopf gene 3 /DB_XREF=gi:7019362 /UG=Hs.4909 dickkopf (Xenopus laevis) homolog 3 /FL=gb:AF177396.1 gb:AB033421.1 gb:AB034203.1 gb:NM_013253.1 NM_013253 dickkopf WNT signaling pathway inhibitor 3 DKK3 27122 NM_001018057 /// NM_013253 /// NM_015881 /// XM_006718177 /// XM_006718178 /// XM_006718179 /// XM_006718180 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from expression pattern /// 0032348 // negative regulation of aldosterone biosynthetic process // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from direct assay /// 2000065 // negative regulation of cortisol biosynthetic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement -12.10 224.93 -0.67 0.52 0.60 -4.61
211623_s_at 211623_s_at M30448 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M30448.1 /DEF=Human casein kinase II beta subunit mRNA, complete cds. /FEA=mRNA /GEN=CSNK2B /DB_XREF=gi:181154 /FL=gb:M30448.1 M30448 fibrillarin FBL 2091 NM_001436 /// XM_005258651 0000278 // mitotic cell cycle // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016074 // snoRNA metabolic process // inferred from electronic annotation /// 0030488 // tRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0032927 // positive regulation of activin receptor signaling pathway // inferred from mutant phenotype /// 0033211 // adiponectin-activated signaling pathway // inferred from direct assay /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043623 // cellular protein complex assembly // non-traceable author statement /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // non-traceable author statement /// 0051101 // regulation of DNA binding // non-traceable author statement /// 0061154 // endothelial tube morphogenesis // inferred from mutant phenotype /// 1990258 // histone glutamine methylation // inferred from direct assay 0001652 // granular component // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005956 // protein kinase CK2 complex // inferred from electronic annotation /// 0005956 // protein kinase CK2 complex // non-traceable author statement /// 0015030 // Cajal body // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031428 // box C/D snoRNP complex // non-traceable author statement /// 0031515 // tRNA (m1A) methyltransferase complex // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016429 // tRNA (adenine-N1-)-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // non-traceable author statement /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 1990259 // histone-glutamine methyltransferase activity // inferred from direct assay 29.25 612.38 0.67 0.52 0.60 -4.61
208677_s_at 208677_s_at AL550657 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL550657 /FEA=EST /DB_XREF=gi:12887837 /DB_XREF=est:AL550657 /CLONE=CS0DI058YI15 (5 prime) /UG=Hs.74631 basigin (OK blood group) /FL=gb:M87879.1 gb:L20471.1 gb:D45131.1 gb:L10240.1 gb:NM_001728.1 AL550657 basigin (Ok blood group) BSG 682 NM_001728 /// NM_198589 /// NM_198590 /// NM_198591 /// XM_005259619 0006090 // pyruvate metabolic process // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046689 // response to mercury ion // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0051591 // response to cAMP // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from sequence or structural similarity 0000139 // Golgi membrane // traceable author statement /// 0002080 // acrosomal membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005537 // mannose binding // inferred from electronic annotation -28.52 393.89 -0.67 0.52 0.60 -4.61
202899_s_at 202899_s_at NM_003017 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003017.1 /DEF=Homo sapiens splicing factor, arginineserine-rich 3 (SFRS3), mRNA. /FEA=mRNA /GEN=SFRS3 /PROD=splicing factor, arginineserine-rich 3 /DB_XREF=gi:4506900 /UG=Hs.167460 splicing factor, arginineserine-rich 3 /FL=gb:L10838.1 gb:NM_003017.1 NM_003017 serine/arginine-rich splicing factor 3 SRSF3 6428 NM_003017 /// NR_036610 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -52.18 825.09 -0.67 0.52 0.60 -4.61
217427_s_at 217427_s_at X75296 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X75296.1 /DEF=H.sapiens TUP1-like enhancer of split gene 1 (TUPLE1) mRNA. /FEA=mRNA /GEN=TUPLE1 /PROD=TUP1 like enhancer of SPLIT gene 1 /DB_XREF=gi:434982 /UG=Hs.172350 HIR (histone cell cycle regulation defective, S. cerevisiae) homolog A X75296 histone cell cycle regulator HIRA 7290 NM_003325 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007369 // gastrulation // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0016605 // PML body // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 18.27 79.29 0.67 0.52 0.60 -4.61
221263_s_at 221263_s_at NM_031287 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031287.1 /DEF=Homo sapiens hypothetical protein MGC3133 (MGC3133), mRNA. /FEA=mRNA /GEN=MGC3133 /PROD=hypothetical protein MGC3133 /DB_XREF=gi:13775199 /FL=gb:NM_031287.1 NM_031287 splicing factor 3b, subunit 5, 10kDa SF3B5 83443 NM_031287 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005689 // U12-type spliceosomal complex // inferred from direct assay -18.97 500.59 -0.67 0.53 0.60 -4.61
202077_at 202077_at NM_005003 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005003.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1, alphabeta subcomplex, 1 (8kD, SDAP) (NDUFAB1), mRNA. /FEA=mRNA /GEN=NDUFAB1 /PROD=NADH dehydrogenase (ubiquinone) 1, alphabetasubcomplex, 1 (8kD, SDAP) /DB_XREF=gi:4826851 /UG=Hs.5556 NADH dehydrogenase (ubiquinone) 1, alphabeta subcomplex, 1 (8kD, SDAP) /FL=gb:AF087660.1 gb:NM_005003.1 NM_005003 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa NDUFAB1 4706 NM_005003 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // non-traceable author statement /// 0009249 // protein lipoylation // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0031966 // mitochondrial membrane // inferred from sequence or structural similarity /// 0031966 // mitochondrial membrane // non-traceable author statement /// 0070469 // respiratory chain // inferred from electronic annotation 0000036 // ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process // non-traceable author statement /// 0005504 // fatty acid binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // non-traceable author statement /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement 43.53 955.71 0.67 0.53 0.60 -4.61
202393_s_at 202393_s_at NM_005655 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005655.1 /DEF=Homo sapiens TGFB inducible early growth response (TIEG), mRNA. /FEA=mRNA /GEN=TIEG /PROD=TGFB inducible early growth response /DB_XREF=gi:5032176 /UG=Hs.82173 TGFB inducible early growth response /FL=gb:U21847.1 gb:NM_005655.1 NM_005655 Kruppel-like factor 10 KLF10 7071 NM_001032282 /// NM_005655 /// NR_103759 /// NR_103760 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001501 // skeletal system development // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0030282 // bone mineralization // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 1901653 // cellular response to peptide // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -14.57 324.19 -0.67 0.53 0.60 -4.61
203050_at 203050_at NM_005657 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005657.1 /DEF=Homo sapiens tumor protein p53-binding protein, 1 (TP53BP1), mRNA. /FEA=mRNA /GEN=TP53BP1 /PROD=tumor protein p53-binding protein, 1 /DB_XREF=gi:5032188 /UG=Hs.170263 tumor protein p53-binding protein, 1 /FL=gb:AF078776.1 gb:NM_005657.1 NM_005657 tumor protein p53 binding protein 1 TP53BP1 7158 NM_001141979 /// NM_001141980 /// NM_005657 /// XM_005254634 /// XM_005254635 /// XM_006720666 0000724 // double-strand break repair via homologous recombination // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006302 // double-strand break repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred by curator 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005657 // replication fork // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0001104 // RNA polymerase II transcription cofactor activity // inferred from mutant phenotype /// 0002039 // p53 binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0035064 // methylated histone binding // inferred from direct assay /// 0042162 // telomeric DNA binding // inferred from electronic annotation 12.17 175.71 0.67 0.53 0.60 -4.61
200640_at 200640_at NM_003406 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003406.1 /DEF=Homo sapiens tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ), mRNA. /FEA=mRNA /GEN=YWHAZ /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, zeta polypeptide /DB_XREF=gi:4507952 /UG=Hs.75103 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide /FL=gb:BC003623.1 gb:M86400.1 gb:NM_003406.1 gb:U28964.1 NM_003406 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta YWHAZ 7534 NM_001135699 /// NM_001135700 /// NM_001135701 /// NM_001135702 /// NM_003406 /// NM_145690 /// XM_005251060 /// XM_005251061 /// XM_005251062 /// XM_005251063 0002553 // histamine secretion by mast cell // inferred from electronic annotation /// 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010941 // regulation of cell death // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 80.77 1209.94 0.66 0.53 0.60 -4.61
202860_at 202860_at NM_014856 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014856.1 /DEF=Homo sapiens KIAA0476 gene product (KIAA0476), mRNA. /FEA=mRNA /GEN=KIAA0476 /PROD=KIAA0476 gene product /DB_XREF=gi:7662151 /UG=Hs.6684 KIAA0476 gene product /FL=gb:AB007945.1 gb:NM_014856.1 NM_014856 DENN/MADD domain containing 4B DENND4B 9909 NM_014856 /// XM_005245678 /// XM_005245679 /// XM_006711690 /// XM_006711691 /// XR_426806 0032313 // regulation of Rab GTPase activity // inferred from direct assay /// 0032483 // regulation of Rab protein signal transduction // inferred from direct assay /// 0032851 // positive regulation of Rab GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0017112 // Rab guanyl-nucleotide exchange factor activity // inferred from direct assay -14.70 143.40 -0.66 0.53 0.60 -4.61
202420_s_at 202420_s_at NM_001357 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001357.2 /DEF=Homo sapiens DEADH (Asp-Glu-Ala-AspHis) box polypeptide 9 (RNA helicase A, nuclear DNA helicase II; leukophysin) (DDX9), transcript variant 1, mRNA. /FEA=mRNA /GEN=DDX9 /PROD=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 9,isoform 1 /DB_XREF=gi:13514819 /UG=Hs.74578 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 9 (RNA helicase A, nuclear DNA helicase II; leukophysin) /FL=gb:NM_001357.2 gb:L13848.1 NM_001357 DEAH (Asp-Glu-Ala-His) box helicase 9 DHX9 1660 NM_001357 /// NM_030588 /// NR_033302 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0001649 // osteoblast differentiation // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0032508 // DNA duplex unwinding // traceable author statement /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // traceable author statement /// 0004003 // ATP-dependent DNA helicase activity // traceable author statement /// 0004004 // ATP-dependent RNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 17.12 151.74 0.66 0.53 0.60 -4.61
202798_at 202798_at NM_006323 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006323.1 /DEF=Homo sapiens SEC24 (S. cerevisiae) related gene family, member B (SEC24B), mRNA. /FEA=mRNA /GEN=SEC24B /PROD=SEC24 (S. cerevisiae) related gene family,member B /DB_XREF=gi:5454045 /UG=Hs.7239 SEC24 (S. cerevisiae) related gene family, member B /FL=gb:NM_006323.1 NM_006323 SEC24 family member B SEC24B 10427 NM_001042734 /// NM_006323 /// XM_005262688 /// XM_005262689 /// XM_005262691 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0012507 // ER to Golgi transport vesicle membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0030127 // COPII vesicle coat // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005215 // transporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation -18.93 225.91 -0.66 0.53 0.60 -4.61
217756_x_at 217756_x_at NM_005770 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005770.1 /DEF=Homo sapiens small EDRK-rich factor 2 (SERF2), mRNA. /FEA=mRNA /GEN=SERF2 /PROD=small EDRK-rich factor 2 /DB_XREF=gi:5032084 /UG=Hs.323806 small EDRK-rich factor 2 /FL=gb:AF320073.1 gb:AF073298.1 gb:NM_005770.1 NM_005770 huntingtin interacting protein K /// microRNA 1282 /// small EDRK-rich factor 2 HYPK /// MIR1282 /// SERF2 10169 /// 25764 /// 100302254 NM_001018108 /// NM_001199875 /// NM_001199876 /// NM_001199877 /// NM_001199878 /// NM_001199885 /// NM_005770 /// NM_016400 /// NR_031695 /// NR_037672 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -48.18 1470.66 -0.66 0.53 0.61 -4.61
209271_at 209271_at AB032251 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB032251.1 /DEF=Homo sapiens BPTF mRNA for bromodomain PHD finger transcription factor, complete cds. /FEA=mRNA /GEN=BPTF /PROD=bromodomain PHD finger transcription factor /DB_XREF=gi:6683491 /UG=Hs.99872 fetal Alzheimer antigen /FL=gb:AB032251.1 AB032251 bromodomain PHD finger transcription factor BPTF 2186 NM_004459 /// NM_182641 /// XM_005257150 /// XM_005257151 /// XM_005257152 /// XM_005257153 /// XM_005257154 /// XM_005257155 /// XM_005257156 /// XM_005257157 /// XM_005257158 /// XM_005257159 /// XM_005257160 /// XM_005257161 /// XM_005257162 /// XM_006721770 /// XM_006721771 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007420 // brain development // inferred from mutant phenotype /// 0007492 // endoderm development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016589 // NURF complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0008134 // transcription factor binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation -14.98 136.86 -0.66 0.53 0.61 -4.61
213242_x_at 213242_x_at AB006622 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB006622.2 /DEF=Homo sapiens mRNA for KIAA0284 protein, partial cds. /FEA=mRNA /GEN=KIAA0284 /PROD=KIAA0284 protein /DB_XREF=gi:6635124 /UG=Hs.182536 KIAA0284 protein AB006622 centrosomal protein 170B CEP170B 283638 NM_001112726 /// NM_015005 /// XM_005267550 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 19.25 155.28 0.65 0.53 0.61 -4.61
200915_x_at 200915_x_at NM_004986 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004986.1 /DEF=Homo sapiens kinectin 1 (kinesin receptor) (KTN1), mRNA. /FEA=mRNA /GEN=KTN1 /PROD=kinectin 1 (kinesin receptor) /DB_XREF=gi:4826813 /UG=Hs.211577 kinectin 1 (kinesin receptor) /FL=gb:D13629.1 gb:L25616.1 gb:NM_004986.1 NM_004986 kinectin 1 (kinesin receptor) KTN1 3895 NM_001079521 /// NM_001079522 /// NM_001271014 /// NM_004986 /// NM_182926 /// NR_073128 /// NR_073129 /// XM_006720138 /// XM_006720139 /// XM_006720140 /// XM_006720141 0007018 // microtubule-based movement // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // traceable author statement /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from electronic annotation 0019894 // kinesin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -30.00 587.42 -0.65 0.53 0.61 -4.61
221428_s_at 221428_s_at NM_030921 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030921.1 /DEF=Homo sapiens hypothetical protein DC42 (DC42), mRNA. /FEA=CDS /GEN=DC42 /PROD=hypothetical protein DC42 /DB_XREF=gi:13569880 /FL=gb:NM_030921.1 NM_030921 transducin (beta)-like 1 X-linked receptor 1 TBL1XR1 79718 NM_024665 /// XM_005247771 /// XM_005247772 /// XM_005247775 /// XM_005247776 /// XM_006713745 /// XM_006713746 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060070 // canonical Wnt signaling pathway // inferred from mutant phenotype 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005876 // spindle microtubule // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from genetic interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0042393 // histone binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from sequence or structural similarity /// 0047485 // protein N-terminus binding // inferred from physical interaction 11.55 116.38 0.65 0.53 0.61 -4.61
209039_x_at 209039_x_at AF001434 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF001434.1 /DEF=Human Hpast (HPAST) mRNA, complete cds. /FEA=mRNA /GEN=HPAST /PROD=Hpast /DB_XREF=gi:2529706 /UG=Hs.155119 EH domain containing 1 /FL=gb:AF001434.1 AF001434 EH-domain containing 1 EHD1 10938 NM_001282444 /// NM_001282445 /// NM_006795 /// XM_006718424 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0010886 // positive regulation of cholesterol storage // inferred from sequence or structural similarity /// 0016197 // endosomal transport // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0032456 // endocytic recycling // inferred from genetic interaction /// 0032456 // endocytic recycling // inferred from mutant phenotype /// 0034383 // low-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from physical interaction /// 1901741 // positive regulation of myoblast fusion // inferred from sequence or structural similarity /// 1990090 // cellular response to nerve growth factor stimulus // inferred from sequence or structural similarity /// 2001137 // positive regulation of endocytic recycling // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0010008 // endosome membrane // inferred from sequence or structural similarity /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031095 // platelet dense tubular network membrane // inferred from sequence or structural similarity /// 0031901 // early endosome membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -30.80 315.57 -0.65 0.53 0.61 -4.61
218893_at 218893_at NM_024710 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024710.1 /DEF=Homo sapiens hypothetical protein FLJ23469 (FLJ23469), mRNA. /FEA=mRNA /GEN=FLJ23469 /PROD=hypothetical protein FLJ23469 /DB_XREF=gi:13376006 /UG=Hs.103833 hypothetical protein FLJ23469 /FL=gb:NM_024710.1 NM_024710 isochorismatase domain containing 2 ISOC2 79763 NM_001136201 /// NM_001136202 /// NM_024710 /// XM_005259265 0008152 // metabolic process // inferred from electronic annotation /// 0031648 // protein destabilization // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 11.10 115.97 0.65 0.53 0.61 -4.61
204426_at 204426_at NM_006815 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006815.1 /DEF=Homo sapiens coated vesicle membrane protein (RNP24), mRNA. /FEA=mRNA /GEN=RNP24 /PROD=coated vesicle membrane protein /DB_XREF=gi:5803148 /UG=Hs.323378 coated vesicle membrane protein /FL=gb:NM_006815.1 NM_006815 transmembrane emp24 domain trafficking protein 2 TMED2 10959 NM_006815 /// XM_005253544 0001893 // maternal placenta development // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from direct assay /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0034260 // negative regulation of GTPase activity // inferred from direct assay /// 0035459 // cargo loading into vesicle // traceable author statement /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0030137 // COPI-coated vesicle // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -16.55 202.07 -0.65 0.54 0.61 -4.61
201808_s_at 201808_s_at BE732652 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE732652 /FEA=EST /DB_XREF=gi:10146644 /DB_XREF=est:601571266F1 /CLONE=IMAGE:3925601 /UG=Hs.76753 endoglin (Osler-Rendu-Weber syndrome 1) /FL=gb:NM_000118.1 BE732652 endoglin ENG 2022 NM_000118 /// NM_001114753 /// NM_001278138 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001300 // chronological cell aging // inferred from electronic annotation /// 0001300 // chronological cell aging // inferred from expression pattern /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001947 // heart looping // inferred from sequence or structural similarity /// 0003084 // positive regulation of systemic arterial blood pressure // inferred from mutant phenotype /// 0003273 // cell migration involved in endocardial cushion formation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007507 // heart development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0016477 // cell migration // inferred from mutant phenotype /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0022009 // central nervous system vasculogenesis // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // inferred from mutant phenotype /// 0030155 // regulation of cell adhesion // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0030509 // BMP signaling pathway // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030513 // positive regulation of BMP signaling pathway // inferred from direct assay /// 0031953 // negative regulation of protein autophosphorylation // inferred from direct assay /// 0031960 // response to corticosteroid // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0036273 // response to statin // inferred from electronic annotation /// 0042060 // wound healing // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042325 // regulation of phosphorylation // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048745 // smooth muscle tissue development // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0048845 // venous blood vessel morphogenesis // inferred from sequence or structural similarity /// 0048870 // cell motility // inferred from mutant phenotype /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from mutant phenotype /// 0060326 // cell chemotaxis // inferred from mutant phenotype /// 0060348 // bone development // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // inferred from mutant phenotype /// 0070278 // extracellular matrix constituent secretion // inferred from electronic annotation /// 0070483 // detection of hypoxia // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071559 // response to transforming growth factor beta // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070022 // transforming growth factor beta receptor homodimeric complex // inferred by curator /// 0072563 // endothelial microparticle // inferred from electronic annotation 0004888 // transmembrane signaling receptor activity // non-traceable author statement /// 0005024 // transforming growth factor beta-activated receptor activity // inferred from direct assay /// 0005072 // transforming growth factor beta receptor, cytoplasmic mediator activity // inferred from direct assay /// 0005114 // type II transforming growth factor beta receptor binding // inferred from physical interaction /// 0005114 // type II transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005534 // galactose binding // inferred from direct assay /// 0005539 // glycosaminoglycan binding // inferred from direct assay /// 0005539 // glycosaminoglycan binding // inferred from sequence or structural similarity /// 0034713 // type I transforming growth factor beta receptor binding // inferred from physical interaction /// 0034713 // type I transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0048185 // activin binding // traceable author statement /// 0050431 // transforming growth factor beta binding // inferred from physical interaction -32.05 299.80 -0.65 0.54 0.61 -4.61
217890_s_at 217890_s_at NM_018222 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018222.1 /DEF=Homo sapiens alpha-parvin (PARVA), mRNA. /FEA=mRNA /GEN=PARVA /PROD=alpha-parvin /DB_XREF=gi:8922672 /UG=Hs.44077 alpha-parvin /FL=gb:AF237771.1 gb:NM_018222.1 NM_018222 parvin, alpha PARVA 55742 NM_018222 /// XM_005253015 0001525 // angiogenesis // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // inferred from sequence or structural similarity /// 0003148 // outflow tract septum morphogenesis // inferred from sequence or structural similarity /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from sequence or structural similarity /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0034113 // heterotypic cell-cell adhesion // inferred from sequence or structural similarity /// 0034329 // cell junction assembly // traceable author statement /// 0034446 // substrate adhesion-dependent cell spreading // inferred from mutant phenotype /// 0060271 // cilium morphogenesis // inferred from mutant phenotype /// 0070252 // actin-mediated cell contraction // inferred from sequence or structural similarity /// 0071670 // smooth muscle cell chemotaxis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -15.10 183.97 -0.65 0.54 0.61 -4.61
208822_s_at 208822_s_at U18321 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U18321.1 /DEF=Human ionizing radiation resistance conferring protein mRNA, complete cds. /FEA=mRNA /PROD=ionizing radiation resistance conferringprotein /DB_XREF=gi:603763 /UG=Hs.159627 death associated protein 3 /FL=gb:U18321.1 U18321 death associated protein 3 DAP3 7818 NM_001199849 /// NM_001199850 /// NM_001199851 /// NM_004632 /// NM_033657 /// XM_005245480 /// XM_005245481 /// XM_005245482 /// XM_006711527 /// XM_006711528 0006915 // apoptotic process // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 12.07 174.16 0.65 0.54 0.61 -4.61
214544_s_at 214544_s_at NM_003825 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_003825.1 /DEF=Homo sapiens synaptosomal-associated protein, 23kD (SNAP23), mRNA. /FEA=CDS /GEN=SNAP23 /PROD=synaptosomal-associated protein, 23kD /DB_XREF=gi:4507096 /UG=Hs.184376 synaptosomal-associated protein, 23kD /FL=gb:Y09568.1 gb:NM_003825.1 NM_003825 synaptosomal-associated protein, 23kDa SNAP23 8773 NM_003825 /// NM_130798 /// XM_006720725 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006903 // vesicle targeting // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061025 // membrane fusion // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042581 // specific granule // inferred from direct assay /// 0042582 // azurophil granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -23.78 248.59 -0.65 0.54 0.61 -4.61
208840_s_at 208840_s_at AU149503 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU149503 /FEA=EST /DB_XREF=gi:11011024 /DB_XREF=est:AU149503 /CLONE=NT2RM4002447 /UG=Hs.6727 Ras-GTPase activating protein SH3 domain-binding protein 2 /FL=gb:AB014560.1 AU149503 GTPase activating protein (SH3 domain) binding protein 2 G3BP2 9908 NM_012297 /// NM_203504 /// NM_203505 /// XM_005263382 /// XM_005263383 /// XM_005263384 /// XM_005263385 /// XM_005263386 0006810 // transport // inferred from electronic annotation /// 0007253 // cytoplasmic sequestering of NF-kappaB // non-traceable author statement /// 0007265 // Ras protein signal transduction // non-traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0030159 // receptor signaling complex scaffold activity // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 16.03 206.64 0.65 0.54 0.61 -4.61
200791_s_at 200791_s_at NM_003870 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003870.1 /DEF=Homo sapiens IQ motif containing GTPase activating protein 1 (IQGAP1), mRNA. /FEA=mRNA /GEN=IQGAP1 /PROD=IQ motif containing GTPase activating protein 1 /DB_XREF=gi:4506786 /UG=Hs.1742 IQ motif containing GTPase activating protein 1 /FL=gb:NM_003870.1 gb:L33075.1 NM_003870 IQ motif containing GTPase activating protein 1 IQGAP1 8826 NM_003870 /// XM_005254984 0001817 // regulation of cytokine production // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032320 // positive regulation of Ras GTPase activity // inferred from electronic annotation /// 0035305 // negative regulation of dephosphorylation // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from direct assay /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from mutant phenotype /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 0072015 // glomerular visceral epithelial cell development // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005884 // actin filament // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // inferred from direct assay /// 0031252 // cell leading edge // inferred from electronic annotation /// 0036057 // slit diaphragm // inferred from sequence or structural similarity /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005095 // GTPase inhibitor activity // traceable author statement /// 0005096 // GTPase activator activity // traceable author statement /// 0005099 // Ras GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from physical interaction /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043539 // protein serine/threonine kinase activator activity // inferred from direct assay /// 0048365 // Rac GTPase binding // inferred from electronic annotation -13.40 547.52 -0.65 0.54 0.61 -4.61
204527_at 204527_at NM_000259 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000259.1 /DEF=Homo sapiens myosin VA (heavy polypeptide 12, myoxin) (MYO5A), mRNA. /FEA=mRNA /GEN=MYO5A /PROD=myosin VA (heavy polypeptide 12, myoxin) /DB_XREF=gi:10835118 /UG=Hs.170157 myosin VA (heavy polypeptide 12, myoxin) /FL=gb:NM_000259.1 gb:U90942.1 NM_000259 myosin VA (heavy chain 12, myoxin) MYO5A 4644 NM_000259 /// NM_001142495 /// XM_005254397 /// XM_005254398 /// XM_005254399 /// XM_005254400 /// XM_005254401 /// XM_005254402 /// XM_005254403 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006582 // melanin metabolic process // inferred from electronic annotation /// 0006810 // transport // non-traceable author statement /// 0006887 // exocytosis // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity /// 0030048 // actin filament-based movement // non-traceable author statement /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0031585 // regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from electronic annotation /// 0031987 // locomotion involved in locomotory behavior // inferred from electronic annotation /// 0032252 // secretory granule localization // inferred from electronic annotation /// 0032400 // melanosome localization // inferred from electronic annotation /// 0032402 // melanosome transport // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0042438 // melanin biosynthetic process // inferred from electronic annotation /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0042640 // anagen // inferred from electronic annotation /// 0042759 // long-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0050808 // synapse organization // inferred from electronic annotation /// 0051643 // endoplasmic reticulum localization // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0072659 // protein localization to plasma membrane // inferred from sequence or structural similarity 0001726 // ruffle // inferred from direct assay /// 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0030141 // secretory granule // inferred from electronic annotation /// 0030426 // growth cone // non-traceable author statement /// 0032593 // insulin-responsive compartment // inferred from sequence or structural similarity /// 0035371 // microtubule plus-end // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042641 // actomyosin // inferred from electronic annotation /// 0043005 // neuron projection // non-traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation 0000146 // microfilament motor activity // non-traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from electronic annotation -9.10 178.38 -0.64 0.54 0.62 -4.61
216515_x_at 216515_x_at AL121585 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL121585 /DEF=Human DNA sequence from clone RP11-504H3 on chromosome 20 Contains the SNX5 gene (sorting nexin 5), a gene similar to PTMA (prothymosin-alpha), the 3 end of a gene encoding a Zinc-finger protein, two CpG islands, ESTs, STSs and GSSs /FEA=mRNA_1 /DB_XREF=gi:8248733 /UG=Hs.283864 Human DNA sequence from clone RP11-504H3 on chromosome 20 Contains the SNX5 gene (sorting nexin 5), a gene similar to PTMA (prothymosin-alpha), the 3 end of a gene encoding a Zinc-finger protein, two CpG islands, ESTs, STSs and GSSs AL121585 microRNA 1244-3 MIR1244-3 100422872 NR_036263 99.18 1014.01 0.64 0.54 0.62 -4.61
213102_at 213102_at Z78330 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z78330 /FEA=EST /DB_XREF=gi:1495103 /DB_XREF=est:HSZ78330 /CLONE=2.49 (CEPH) /UG=Hs.10927 hypothetical protein EUROIMAGE1875335 Z78330 ARP3 actin-related protein 3 homolog (yeast) ACTR3 10096 NM_001277140 /// NM_005721 /// NR_102318 0006928 // cellular component movement // traceable author statement /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0008356 // asymmetric cell division // inferred from electronic annotation /// 0009743 // response to carbohydrate // inferred from electronic annotation /// 0010592 // positive regulation of lamellipodium assembly // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0033206 // meiotic cytokinesis // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043519 // regulation of myosin II filament organization // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from electronic annotation /// 0051321 // meiotic cell cycle // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051653 // spindle localization // inferred from electronic annotation /// 0060271 // cilium morphogenesis // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation 42.15 986.42 0.64 0.54 0.62 -4.61
203667_at 203667_at NM_004607 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004607.1 /DEF=Homo sapiens tubulin-specific chaperone a (TBCA), mRNA. /FEA=mRNA /GEN=TBCA /PROD=beta-tubulin cofactor A /DB_XREF=gi:4759211 /UG=Hs.24930 tubulin-specific chaperone a /FL=gb:AF038952.1 gb:NM_004607.1 NM_004607 tubulin folding cofactor A TBCA 6902 NM_004607 /// XM_005248586 0006457 // protein folding // traceable author statement /// 0007021 // tubulin complex assembly // inferred from electronic annotation /// 0007023 // post-chaperonin tubulin folding pathway // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // traceable author statement 50.08 628.86 0.64 0.54 0.62 -4.61
209067_s_at 209067_s_at D89092 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D89092.1 /DEF=Homo sapiens hnRNP JKTBP mRNA, complete cds. /FEA=mRNA /GEN=hnRNP JKTBP /DB_XREF=gi:2780747 /UG=Hs.170311 heterogeneous nuclear ribonucleoprotein D-like /FL=gb:D89092.1 gb:D89678.1 D89092 heterogeneous nuclear ribonucleoprotein D-like HNRNPDL 9987 NM_001207000 /// NM_005463 /// NM_031372 /// NR_003249 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // non-traceable author statement /// 0010468 // regulation of gene expression // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // non-traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0008143 // poly(A) binding // inferred from direct assay /// 0034046 // poly(G) binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 16.85 535.02 0.64 0.54 0.62 -4.61
201114_x_at 201114_x_at NM_002792 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002792.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 7 (PSMA7), mRNA. /FEA=mRNA /GEN=PSMA7 /PROD=proteasome (prosome, macropain) subunit, alphatype, 7 /DB_XREF=gi:4506188 /UG=Hs.233952 proteasome (prosome, macropain) subunit, alpha type, 7 /FL=gb:BC004427.1 gb:AF022815.1 gb:AF054185.1 gb:NM_002792.1 NM_002792 proteasome (prosome, macropain) subunit, alpha type, 7 PSMA7 5688 NM_002792 /// NM_152255 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction -63.13 842.19 -0.64 0.54 0.62 -4.61
218654_s_at 218654_s_at NM_016071 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016071.1 /DEF=Homo sapiens CGI-139 protein (LOC51650), mRNA. /FEA=mRNA /GEN=LOC51650 /PROD=CGI-139 protein /DB_XREF=gi:7706348 /UG=Hs.83006 CGI-139 protein /FL=gb:AF151897.1 gb:AF078858.1 gb:NM_016071.1 NM_016071 mitochondrial ribosomal protein S33 MRPS33 51650 NM_016071 /// NM_053035 0006412 // translation // non-traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement -11.40 162.97 -0.64 0.54 0.62 -4.61
214875_x_at 214875_x_at AW001847 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW001847 /FEA=EST /DB_XREF=gi:5848763 /DB_XREF=est:wt81a04.x1 /CLONE=IMAGE:2513838 /UG=Hs.279518 amyloid beta (A4) precursor-like protein 2 AW001847 amyloid beta (A4) precursor-like protein 2 APLP2 334 NM_001142276 /// NM_001142277 /// NM_001142278 /// NM_001243299 /// NM_001642 /// NR_024515 /// NR_024516 0001967 // suckling behavior // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // non-traceable author statement /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046914 // transition metal ion binding // inferred from electronic annotation -32.80 631.65 -0.64 0.54 0.62 -4.61
211040_x_at 211040_x_at BC006325 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006325.1 /DEF=Homo sapiens, G-2 and S-phase expressed 1, clone MGC:12560, mRNA, complete cds. /FEA=mRNA /PROD=G-2 and S-phase expressed 1 /DB_XREF=gi:13623450 /FL=gb:BC006325.1 BC006325 G-2 and S-phase expressed 1 GTSE1 51512 NM_016426 /// XM_005261627 0000085 // mitotic G2 phase // non-traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // non-traceable author statement /// 0007017 // microtubule-based process // non-traceable author statement /// 0008033 // tRNA processing // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // non-traceable author statement /// 0016020 // membrane // inferred from direct assay 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016783 // sulfurtransferase activity // inferred from electronic annotation -13.00 165.93 -0.64 0.54 0.62 -4.61
215696_s_at 215696_s_at BC001404 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC001404.1 /DEF=Homo sapiens, clone IMAGE:3139772, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3139772) /DB_XREF=gi:12655104 /UG=Hs.5716 KIAA0310 gene product BC001404 SEC16 homolog A (S. cerevisiae) SEC16A 9919 NM_001276418 /// NM_014866 /// XM_005266132 /// XM_005266133 /// XM_005266134 /// XM_005266136 /// XM_005266137 0006810 // transport // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0048208 // COPII vesicle coating // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 13.93 229.84 0.64 0.54 0.62 -4.61
201651_s_at 201651_s_at NM_007229 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007229.1 /DEF=Homo sapiens protein kinase C and casein kinase substrate in neurons 2 (PACSIN2), mRNA. /FEA=mRNA /GEN=PACSIN2 /PROD=protein kinase C and casein kinase substrate inneurons 2 /DB_XREF=gi:6005825 /UG=Hs.18842 protein kinase C and casein kinase substrate in neurons 2 /FL=gb:AF128536.1 gb:NM_007229.1 NM_007229 protein kinase C and casein kinase substrate in neurons 2 PACSIN2 11252 NM_001184970 /// NM_001184971 /// NM_007229 /// XM_005261319 /// XM_006724117 /// XM_006724118 /// XM_006724119 /// XM_006724120 0006897 // endocytosis // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0036010 // protein localization to endosome // inferred from mutant phenotype /// 0045806 // negative regulation of endocytosis // inferred from electronic annotation /// 0048858 // cell projection morphogenesis // inferred from sequence or structural similarity /// 0070836 // caveola assembly // inferred from mutant phenotype /// 0072584 // caveolin-mediated endocytosis // inferred from mutant phenotype /// 0097320 // membrane tubulation // inferred from direct assay /// 0097320 // membrane tubulation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0070300 // phosphatidic acid binding // inferred from direct assay 27.42 264.91 0.64 0.54 0.62 -4.61
217942_at 217942_at NM_021821 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021821.1 /DEF=Homo sapiens MDS023 protein (MDS023), mRNA. /FEA=mRNA /GEN=MDS023 /PROD=MDS023 protein /DB_XREF=gi:11141894 /UG=Hs.10724 MDS023 protein /FL=gb:AF182422.1 gb:NM_021821.1 NM_021821 mitochondrial ribosomal protein S35 MRPS35 60488 NM_001190864 /// NM_021821 0042769 // DNA damage response, detection of DNA damage // non-traceable author statement /// 0043043 // peptide biosynthetic process // inferred by curator 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005763 // mitochondrial small ribosomal subunit // inferred from sequence or structural similarity /// 0005763 // mitochondrial small ribosomal subunit // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay 14.67 297.09 0.63 0.54 0.62 -4.61
201949_x_at 201949_x_at AL572341 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL572341 /FEA=EST /DB_XREF=gi:12930514 /DB_XREF=est:AL572341 /CLONE=CS0DI007YC13 (3 prime) /UG=Hs.76368 capping protein (actin filament) muscle Z-line, beta /FL=gb:NM_004930.1 gb:U03271.1 AL572341 capping protein (actin filament) muscle Z-line, beta CAPZB 832 NM_001206540 /// NM_001206541 /// NM_001282162 /// NM_004930 /// XM_006710938 0006928 // cellular component movement // traceable author statement /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0022604 // regulation of cell morphogenesis // inferred from mutant phenotype /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0048747 // muscle fiber development // inferred from electronic annotation /// 0051016 // barbed-end actin filament capping // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation /// 0090036 // regulation of protein kinase C signaling // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071203 // WASH complex // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation -21.18 387.46 -0.63 0.55 0.62 -4.61
201341_at 201341_at NM_003633 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003633.1 /DEF=Homo sapiens ectodermal-neural cortex (with BTB-like domain) (ENC1), mRNA. /FEA=mRNA /GEN=ENC1 /PROD=ectodermal-neural cortex (with BTB-like domain) /DB_XREF=gi:4505460 /UG=Hs.104925 ectodermal-neural cortex (with BTB-like domain) /FL=gb:BC000418.1 gb:AF010314.1 gb:AF059611.1 gb:AF005381.1 gb:NM_003633.1 NM_003633 ectodermal-neural cortex 1 (with BTB domain) ENC1 8507 NM_001256574 /// NM_001256575 /// NM_001256576 /// NM_003633 /// NR_046318 0007275 // multicellular organismal development // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0010499 // proteasomal ubiquitin-independent protein catabolic process // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -32.58 263.54 -0.63 0.55 0.62 -4.61
201760_s_at 201760_s_at NM_018639 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018639.1 /DEF=Homo sapiens CS box-containing WD protein (LOC55884), mRNA. /FEA=mRNA /GEN=LOC55884 /PROD=CS box-containing WD protein /DB_XREF=gi:8923880 /UG=Hs.136644 CS box-containing WD protein /FL=gb:AF229181.1 gb:AF163324.1 gb:NM_018639.1 NM_018639 WD repeat and SOCS box containing 2 WSB2 55884 NM_001278557 /// NM_001278558 /// NM_018639 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 27.23 541.51 0.63 0.55 0.63 -4.61
211003_x_at 211003_x_at BC003551 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003551.1 /DEF=Homo sapiens, Similar to transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase), clone MGC:1193, mRNA, complete cds. /FEA=mRNA /PROD=Similar to transglutaminase 2 (C polypeptide,protein-glutamine-gamma-glutamyltransferase) /DB_XREF=gi:13097680 /UG=Hs.8265 transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) /FL=gb:BC003551.1 BC003551 transglutaminase 2 TGM2 7052 NM_004613 /// NM_198951 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018153 // isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine // inferred from electronic annotation /// 0032471 // negative regulation of endoplasmic reticulum calcium ion concentration // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0043277 // apoptotic cell clearance // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from sequence or structural similarity /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// 0051561 // positive regulation of mitochondrial calcium ion concentration // inferred from mutant phenotype /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060662 // salivary gland cavitation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from mutant phenotype /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 14.92 224.99 0.63 0.55 0.63 -4.61
213230_at 213230_at AI422335 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI422335 /FEA=EST /DB_XREF=gi:4268266 /DB_XREF=est:tf65f01.x1 /CLONE=IMAGE:2104153 /UG=Hs.78358 paraneoplastic antigen AI422335 cerebellar degeneration-related protein 2-like CDR2L 30850 NM_014603 /// XM_006721852 13.22 108.66 0.63 0.55 0.63 -4.61
200932_s_at 200932_s_at NM_006400 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006400.2 /DEF=Homo sapiens dynactin 2 (p50) (DCTN2), mRNA. /FEA=mRNA /GEN=DCTN2 /PROD=dynactin 2 /DB_XREF=gi:13259506 /UG=Hs.84153 dynactin 2 (p50) /FL=gb:U50733.1 gb:BC000718.1 gb:NM_006400.2 NM_006400 dynactin 2 (p50) DCTN2 10540 NM_001261412 /// NM_001261413 /// NM_006400 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007052 // mitotic spindle organization // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement 0000776 // kinetochore // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005869 // dynactin complex // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030507 // spectrin binding // inferred from direct assay 14.90 364.77 0.63 0.55 0.63 -4.61
210052_s_at 210052_s_at AF098158 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF098158.1 /DEF=Homo sapiens restricted expressed proliferation associated protein 100 mRNA, complete cds. /FEA=mRNA /PROD=restricted expressed proliferation associatedprotein 100 /DB_XREF=gi:6073830 /UG=Hs.9329 chromosome 20 open reading frame 1 /FL=gb:NM_012112.1 gb:BC004136.1 gb:AB024704.1 gb:AF146731.1 gb:AF098158.1 gb:AB027467.1 AF098158 TPX2, microtubule-associated TPX2 22974 NM_012112 /// XM_005260340 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0060236 // regulation of mitotic spindle organization // inferred from sequence or structural similarity 0000922 // spindle pole // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // traceable author statement /// 0005525 // GTP binding // traceable author statement /// 0019901 // protein kinase binding // inferred from physical interaction -21.82 365.16 -0.63 0.55 0.63 -4.61
202424_at 202424_at NM_030662 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030662.1 /DEF=Homo sapiens mitogen-activated protein kinase kinase 2 (MAP2K2), mRNA. /FEA=mRNA /GEN=MAP2K2 /PROD=mitogen-activated protein kinase kinase 2 /DB_XREF=gi:13489053 /UG=Hs.72241 mitogen-activated protein kinase kinase 2 /FL=gb:BC000471.1 gb:NM_030662.1 NM_030662 mitogen-activated protein kinase kinase 2 MAP2K2 5605 NM_030662 /// XM_006722799 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // non-traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0032872 // regulation of stress-activated MAPK cascade // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0036289 // peptidyl-serine autophosphorylation // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0070371 // ERK1 and ERK2 cascade // traceable author statement /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 0090170 // regulation of Golgi inheritance // traceable author statement /// 2000147 // positive regulation of cell motility // inferred from electronic annotation /// 2000641 // regulation of early endosome to late endosome transport // traceable author statement 0005576 // extracellular region // non-traceable author statement /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005769 // early endosome // traceable author statement /// 0005770 // late endosome // traceable author statement /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005911 // cell-cell junction // inferred from direct assay /// 0005925 // focal adhesion // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004708 // MAP kinase kinase activity // inferred from direct assay /// 0004712 // protein serine/threonine/tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0043539 // protein serine/threonine kinase activator activity // inferred from direct assay /// 0097110 // scaffold protein binding // inferred from physical interaction 29.17 353.44 0.63 0.55 0.63 -4.61
221484_at 221484_at BF691447 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF691447 /FEA=EST /DB_XREF=gi:11976855 /DB_XREF=est:602247615F1 /CLONE=IMAGE:4332866 /UG=Hs.107526 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 /FL=gb:AB004550.1 gb:AF038663.1 gb:NM_004776.1 BF691447 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 B4GALT5 9334 NM_004776 0005975 // carbohydrate metabolic process // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0016266 // O-glycan processing // traceable author statement /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008378 // galactosyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -29.90 565.88 -0.62 0.55 0.63 -4.61
213729_at 213729_at Z78308 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z78308 /FEA=EST /DB_XREF=gi:1495081 /DB_XREF=est:HSZ78308 /CLONE=1.47 (CEPH) /UG=Hs.119325 Huntingtin-interacting protein A Z78308 PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) PRPF40A 55660 NM_017892 /// XM_005246676 /// XM_005246677 /// XM_005246678 /// XM_005246679 0006397 // mRNA processing // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0070064 // proline-rich region binding // inferred from electronic annotation 27.00 386.73 0.62 0.55 0.63 -4.61
208899_x_at 208899_x_at AF100741 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF100741.1 /DEF=Homo sapiens vacuolar H-ATPase subunit D mRNA, complete cds. /FEA=mRNA /PROD=vacuolar H-ATPase subunit D /DB_XREF=gi:5138992 /UG=Hs.272630 vacuolar proton pump delta polypeptide /FL=gb:AF104629.1 gb:AF077614.1 gb:BC001411.1 gb:AF145316.1 gb:AF100741.1 gb:NM_015994.1 AF100741 ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D ATP6V1D 51382 NM_015994 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015992 // proton transport // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0033572 // transferrin transport // traceable author statement /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0061512 // protein localization to cilium // inferred from mutant phenotype /// 0090382 // phagosome maturation // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005929 // cilium // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 17.48 318.59 0.62 0.55 0.63 -4.61
208696_at 208696_at AF275798 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF275798.1 /DEF=Homo sapiens PNAS-102 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-102 /DB_XREF=gi:10834761 /UG=Hs.1600 chaperonin containing TCP1, subunit 5 (epsilon) /FL=gb:AF275798.1 AF275798 chaperonin containing TCP1, subunit 5 (epsilon) CCT5 22948 NM_012073 0006457 // protein folding // traceable author statement /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0009615 // response to virus // inferred from expression pattern /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0002199 // zona pellucida receptor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0044297 // cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0031681 // G-protein beta-subunit binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from electronic annotation -31.57 703.39 -0.62 0.55 0.63 -4.61
211058_x_at 211058_x_at BC006379 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006379.1 /DEF=Homo sapiens, tubulin alpha 1, clone MGC:12832, mRNA, complete cds. /FEA=mRNA /PROD=tubulin alpha 1 /DB_XREF=gi:13623540 /FL=gb:BC006379.1 BC006379 tubulin, alpha 1b TUBA1B 10376 NM_006082 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation -383.40 4404.40 -0.62 0.55 0.63 -4.61
201308_s_at 201308_s_at NM_018243 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018243.1 /DEF=Homo sapiens hypothetical protein FLJ10849 (FLJ10849), mRNA. /FEA=mRNA /GEN=FLJ10849 /PROD=hypothetical protein FLJ10849 /DB_XREF=gi:8922711 /UG=Hs.8768 hypothetical protein FLJ10849 /FL=gb:NM_018243.1 NM_018243 septin 11 SEPT11 55752 NM_018243 /// XM_005263120 /// XM_005263121 /// XM_005263122 /// XM_006714259 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation -13.22 113.36 -0.62 0.55 0.63 -4.61
201624_at 201624_at NM_001349 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001349.1 /DEF=Homo sapiens aspartyl-tRNA synthetase (DARS), mRNA. /FEA=mRNA /GEN=DARS /PROD=aspartyl-tRNA synthetase /DB_XREF=gi:4557512 /UG=Hs.80758 aspartyl-tRNA synthetase /FL=gb:BC000629.1 gb:J05032.1 gb:NM_001349.1 NM_001349 aspartyl-tRNA synthetase DARS 1615 NM_001293312 /// NM_001349 0006412 // translation // traceable author statement /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation /// 0006461 // protein complex assembly // traceable author statement /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004046 // aminoacylase activity // traceable author statement /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -10.35 98.38 -0.62 0.55 0.63 -4.61
211921_x_at 211921_x_at AF348514 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF348514.1 /DEF=Homo sapiens fetal thymus prothymosin alpha mRNA, complete cds. /FEA=CDS /PROD=prothymosin alpha /DB_XREF=gi:13560658 /FL=gb:AF348514.1 AF348514 prothymosin alpha-like /// prothymosin alpha-like /// microRNA 1244-1 /// microRNA 1244-2 /// microRNA 1244-3 /// prothymosin, alpha LOC100506248 /// LOC728026 /// MIR1244-1 /// MIR1244-2 /// MIR1244-3 /// PTMA 5757 /// 728026 /// 100302285 /// 100422872 /// 100422885 /// 100506248 NM_001099285 /// NM_002823 /// NR_036052 /// NR_036262 /// NR_036263 /// XM_001126659 /// XM_003960458 /// XM_005275719 /// XM_005276418 0006351 // transcription, DNA-templated // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay -70.97 1801.21 -0.62 0.55 0.63 -4.61
204361_s_at 204361_s_at AB014486 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB014486.1 /DEF=Homo sapiens mRNA for RA70, complete cds. /FEA=mRNA /GEN=RA70 /PROD=RA70 /DB_XREF=gi:4062959 /UG=Hs.52644 SKAP55 homologue /FL=gb:BC002893.1 gb:AF072166.1 gb:AB014486.1 gb:AF051323.1 gb:NM_003930.1 AB014486 src kinase associated phosphoprotein 2 SKAP2 8935 NM_003930 /// XM_005249901 0006461 // protein complex assembly // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // traceable author statement /// 0042113 // B cell activation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation 8.05 48.23 0.62 0.55 0.63 -4.61
202157_s_at 202157_s_at U69546 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U69546.1 /DEF=Homo sapiens RNA-binding protein BRUNOL3 (BRUNOL3) mRNA, complete cds. /FEA=mRNA /GEN=BRUNOL3 /PROD=RNA-binding protein BRUNOL3 /DB_XREF=gi:1568642 /UG=Hs.211610 CUG triplet repeat, RNA-binding protein 2 /FL=gb:U69546.1 gb:AF036956.1 gb:AF090694.1 gb:NM_006561.1 U69546 CUGBP, Elav-like family member 2 CELF2 10659 NM_001025076 /// NM_001025077 /// NM_001083591 /// NM_006561 /// XM_005252348 /// XM_005252349 /// XM_005252351 /// XM_005252354 /// XM_005252357 /// XM_005252358 /// XM_006717365 /// XM_006717366 /// XM_006717367 /// XM_006717368 /// XM_006717369 /// XM_006717370 /// XM_006717371 /// XM_006717372 /// XM_006717373 /// XM_006717374 /// XM_006717375 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008016 // regulation of heart contraction // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -15.62 369.56 -0.62 0.56 0.63 -4.61
202277_at 202277_at AL568804 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL568804 /FEA=EST /DB_XREF=gi:12923509 /DB_XREF=est:AL568804 /CLONE=CS0DE005YN15 (3 prime) /UG=Hs.90458 serine palmitoyltransferase, long chain base subunit 1 /FL=gb:NM_006415.1 AL568804 serine palmitoyltransferase, long chain base subunit 1 SPTLC1 10558 NM_001281303 /// NM_006415 /// NM_178324 /// XR_242563 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006686 // sphingomyelin biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046511 // sphinganine biosynthetic process // inferred from electronic annotation /// 0046512 // sphingosine biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0017059 // serine C-palmitoyltransferase complex // inferred from direct assay /// 0035339 // SPOTS complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 13.90 430.77 0.62 0.56 0.63 -4.61
208945_s_at 208945_s_at NM_003766 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_003766.1 /DEF=Homo sapiens beclin 1 (coiled-coil, myosin-like BCL2-interacting protein) (BECN1), mRNA. /FEA=CDS /GEN=BECN1 /PROD=beclin 1 (coiled-coil, myosin-likeBCL2-interacting protein) /DB_XREF=gi:4502394 /UG=Hs.12272 beclin 1 (coiled-coil, myosin-like BCL2-interacting protein) /FL=gb:AF077301.1 gb:NM_003766.1 gb:AF139131.1 NM_003766 beclin 1, autophagy related BECN1 8678 NM_003766 /// XM_005257758 /// XM_005257759 /// XM_005257760 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000910 // cytokinesis // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006968 // cellular defense response // traceable author statement /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016239 // positive regulation of macroautophagy // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0048666 // neuron development // inferred from electronic annotation /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051707 // response to other organism // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0071275 // cellular response to aluminum ion // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -9.05 128.85 -0.62 0.56 0.63 -4.61
218288_s_at 218288_s_at NM_021825 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021825.1 /DEF=Homo sapiens hypothetical protein MDS025 (MDS025), mRNA. /FEA=mRNA /GEN=MDS025 /PROD=hypothetical protein MDS025 /DB_XREF=gi:11141900 /UG=Hs.154938 hypothetical protein MDS025 /FL=gb:AF182412.1 gb:AF182424.1 gb:NM_021825.1 gb:AF271782.1 gb:AL136791.1 NM_021825 coiled-coil domain containing 90B CCDC90B 60492 NM_001286116 /// NM_001286117 /// NM_001286118 /// NM_001286119 /// NM_001286120 /// NM_021825 /// XM_005274152 /// XM_005274154 /// XM_005274156 /// XM_005274159 /// XM_006718654 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -22.40 419.68 -0.62 0.56 0.63 -4.61
217900_at 217900_at NM_018060 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018060.1 /DEF=Homo sapiens hypothetical protein FLJ10326 (FLJ10326), mRNA. /FEA=mRNA /GEN=FLJ10326 /PROD=hypothetical protein FLJ10326 /DB_XREF=gi:8922355 /UG=Hs.262823 hypothetical protein FLJ10326 /FL=gb:NM_018060.1 NM_018060 isoleucyl-tRNA synthetase 2, mitochondrial IARS2 55699 NM_018060 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006428 // isoleucyl-tRNA aminoacylation // inferred from electronic annotation /// 0006450 // regulation of translational fidelity // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0002161 // aminoacyl-tRNA editing activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004822 // isoleucine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -16.55 318.85 -0.62 0.56 0.63 -4.61
216693_x_at 216693_x_at AL133102 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL133102.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434C1722 (from clone DKFZp434C1722). /FEA=mRNA /DB_XREF=gi:6453585 /UG=Hs.127842 CGI-142 AL133102 hepatoma-derived growth factor, related protein 3 HDGFRP3 50810 NM_016073 /// XM_006720554 0008283 // cell proliferation // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation -28.85 432.00 -0.61 0.56 0.64 -4.61
202131_s_at 202131_s_at NM_003831 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003831.1 /DEF=Homo sapiens sudD (suppressor of bimD6, Aspergillus nidulans) homolog (SUDD), mRNA. /FEA=mRNA /GEN=SUDD /PROD=sudD (suppressor of bimD6, Aspergillus nidulans)homolog /DB_XREF=gi:4507298 /UG=Hs.209061 sudD (suppressor of bimD6, Aspergillus nidulans) homolog /FL=gb:AF013591.1 gb:NM_003831.1 NM_003831 RIO kinase 3 RIOK3 8780 NM_003831 /// NM_145906 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007059 // chromosome segregation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation -17.45 123.42 -0.61 0.56 0.64 -4.61
219933_at 219933_at NM_016066 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016066.1 /DEF=Homo sapiens CGI-133 protein (LOC51022), mRNA. /FEA=mRNA /GEN=LOC51022 /PROD=CGI-133 protein /DB_XREF=gi:7705627 /UG=Hs.5054 CGI-133 protein /FL=gb:AF151891.1 gb:NM_016066.1 gb:AF132495.2 NM_016066 glutaredoxin 2 GLRX2 51022 NM_001243399 /// NM_016066 /// NM_197962 /// XM_005245231 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006457 // protein folding // traceable author statement /// 0006749 // glutathione metabolic process // traceable author statement /// 0006915 // apoptotic process // non-traceable author statement /// 0009266 // response to temperature stimulus // non-traceable author statement /// 0009966 // regulation of signal transduction // non-traceable author statement /// 0010033 // response to organic substance // inferred from direct assay /// 0030154 // cell differentiation // non-traceable author statement /// 0042262 // DNA protection // non-traceable author statement /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0045454 // cell redox homeostasis // traceable author statement /// 0051775 // response to redox state // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0003756 // protein disulfide isomerase activity // traceable author statement /// 0008794 // arsenate reductase (glutaredoxin) activity // traceable author statement /// 0009055 // electron carrier activity // non-traceable author statement /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015038 // glutathione disulfide oxidoreductase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation -11.32 226.01 -0.61 0.56 0.64 -4.61
218134_s_at 218134_s_at NM_018047 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018047.1 /DEF=Homo sapiens hypothetical protein FLJ10290 (FLJ10290), mRNA. /FEA=mRNA /GEN=FLJ10290 /PROD=hypothetical protein FLJ10290 /DB_XREF=gi:8922327 /UG=Hs.25516 hypothetical protein FLJ10290 /FL=gb:AL136933.1 gb:BC003402.1 gb:NM_018047.1 NM_018047 RNA binding motif protein 22 RBM22 55696 NM_018047 /// XM_005268479 0000060 // protein import into nucleus, translocation // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0033120 // positive regulation of RNA splicing // inferred from direct assay /// 0035690 // cellular response to drug // inferred from direct assay /// 0045292 // mRNA cis splicing, via spliceosome // inferred from direct assay /// 0090316 // positive regulation of intracellular protein transport // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017069 // snRNA binding // inferred from direct assay /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 9.15 139.28 0.61 0.56 0.64 -4.61
207830_s_at 207830_s_at NM_002713 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002713.1 /DEF=Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 8 (PPP1R8), mRNA. /FEA=mRNA /GEN=PPP1R8 /PROD=protein phosphatase 1, regulatory (inhibitor)subunit 8 /DB_XREF=gi:4506014 /UG=Hs.78961 protein phosphatase 1, regulatory (inhibitor) subunit 8 /FL=gb:NM_002713.1 gb:U14575.1 NM_002713 protein phosphatase 1, regulatory subunit 8 PPP1R8 5511 NM_002713 /// NM_014110 /// NM_138558 /// XM_006710723 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006401 // RNA catabolic process // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation /// 0090501 // RNA phosphodiester bond hydrolysis // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004864 // protein phosphatase inhibitor activity // inferred from electronic annotation /// 0004865 // protein serine/threonine phosphatase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008599 // protein phosphatase type 1 regulator activity // inferred from electronic annotation /// 0008995 // ribonuclease E activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation 19.92 236.24 0.61 0.56 0.64 -4.61
219336_s_at 219336_s_at NM_015947 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015947.1 /DEF=Homo sapiens CGI-18 protein (LOC51008), mRNA. /FEA=mRNA /GEN=LOC51008 /PROD=CGI-18 protein /DB_XREF=gi:7705601 /UG=Hs.121599 CGI-18 protein /FL=gb:AY013290.1 gb:AF132952.1 gb:NM_015947.1 NM_015947 activating signal cointegrator 1 complex subunit 1 ASCC1 51008 NM_001198798 /// NM_001198799 /// NM_001198800 /// NM_015947 /// NR_045564 /// XM_005269878 /// XM_006717872 /// XM_006717873 /// XM_006717874 /// XM_006717875 /// XM_006717876 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation -16.10 101.78 -0.61 0.56 0.64 -4.61
208653_s_at 208653_s_at AF263279 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF263279.1 /DEF=Homo sapiens CD164 mRNA, complete cds. /FEA=CDS /PROD=CD164 /DB_XREF=gi:9230740 /UG=Hs.43910 CD164 antigen, sialomucin /FL=gb:AF299341.1 gb:AF299343.1 gb:AF263279.1 AF263279 CD164 molecule, sialomucin CD164 8763 NM_001142401 /// NM_001142402 /// NM_001142403 /// NM_001142404 /// NM_006016 0006955 // immune response // traceable author statement /// 0007155 // cell adhesion // inferred from direct assay /// 0007157 // heterophilic cell-cell adhesion // inferred from direct assay /// 0007162 // negative regulation of cell adhesion // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // traceable author statement /// 0007517 // muscle organ development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // non-traceable author statement /// 0030097 // hemopoiesis // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 16.68 165.81 0.61 0.56 0.64 -4.61
217025_s_at 217025_s_at AL110225 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL110225.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434D064 (from clone DKFZp434D064); partial cds. /FEA=mRNA /GEN=DKFZp434D064 /PROD=hypothetical protein /DB_XREF=gi:5817161 /UG=Hs.89434 drebrin 1 AL110225 drebrin 1 DBN1 1627 NM_004395 /// NM_080881 /// XM_005265827 /// XM_005265828 /// XM_005265829 /// XM_006714826 0007015 // actin filament organization // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010643 // cell communication by chemical coupling // inferred from electronic annotation /// 0010644 // cell communication by electrical coupling // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032507 // maintenance of protein location in cell // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement /// 0048699 // generation of neurons // inferred from electronic annotation /// 0050773 // regulation of dendrite development // non-traceable author statement /// 0061351 // neural precursor cell proliferation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // non-traceable author statement /// 0042641 // actomyosin // non-traceable author statement 0003779 // actin binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005522 // profilin binding // inferred from sequence or structural similarity 23.63 246.04 0.61 0.56 0.64 -4.61
221501_x_at 221501_x_at AF229069 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF229069.1 /DEF=Homo sapiens KIAA0220-like protein mRNA, complete cds. /FEA=mRNA /PROD=KIAA0220-like protein /DB_XREF=gi:8980670 /UG=Hs.251928 nuclear pore complex interacting protein /FL=gb:AF229069.1 AF229069 polycystin-1-like /// nuclear pore complex interacting protein family, member A1 /// nuclear pore complex interacting protein family, member A2 /// nuclear pore complex interacting protein family, member A3 /// nuclear pore complex interacting protein family, member A5 /// nuclear pore complex interacting protein family, member A7 /// nuclear pore complex interacting protein family, member A8 /// polycystic kidney disease 1 (autosomal dominant) pseudogene 1 LOC101930075 /// NPIPA1 /// NPIPA2 /// NPIPA3 /// NPIPA5 /// NPIPA7 /// NPIPA8 /// PKD1P1 9284 /// 339044 /// 642778 /// 642799 /// 100288332 /// 101059938 /// 101059953 /// 101930075 NM_001277323 /// NM_001277324 /// NM_001277325 /// NM_001282507 /// NM_001282511 /// NM_006985 /// NR_036447 /// XM_005255019 /// XM_005255020 /// XM_005255021 /// XM_005255024 /// XM_005255484 /// XM_005255485 /// XM_005255486 /// XM_005255487 /// XM_005255488 /// XM_005255489 /// XM_005255490 /// XM_005255491 /// XM_005255492 /// XM_005255694 /// XM_005255695 /// XM_005255735 /// XM_005255737 /// XM_005255738 /// XM_005276493 /// XM_006720823 /// XM_006720824 /// XM_006720825 /// XM_006720826 /// XM_006720827 /// XM_006720828 /// XM_006720829 /// XM_006720830 /// XM_006720916 /// XM_006720917 /// XM_006720979 /// XM_006720980 /// XM_006725185 /// XM_006725186 /// XM_006725187 /// XM_006725188 /// XM_006725189 /// XM_006725190 /// XM_006725191 /// XM_006725205 /// XM_006725206 /// XM_006725207 /// XM_006725208 /// XM_006725209 /// XM_006725210 /// XM_006725211 /// XM_006725212 /// XM_006725213 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 38.05 378.50 0.60 0.56 0.64 -4.61
208800_at 208800_at AV702627 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV702627 /FEA=EST /DB_XREF=gi:10718957 /DB_XREF=est:AV702627 /CLONE=ADBAHC04 /UG=Hs.237825 signal recognition particle 72kD /FL=gb:AF069765.1 gb:AF077019.1 gb:NM_006947.1 AV702627 signal recognition particle 72kDa SRP72 6731 NM_001267722 /// NM_006947 /// XM_005265765 0006412 // translation // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0042493 // response to drug // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inferred from electronic annotation 0005047 // signal recognition particle binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 24.60 300.70 0.60 0.56 0.64 -4.61
217819_at 217819_at NM_016099 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016099.1 /DEF=Homo sapiens HSPC041 protein (LOC51125), mRNA. /FEA=mRNA /GEN=LOC51125 /PROD=HSPC041 protein /DB_XREF=gi:7705820 /UG=Hs.7953 HSPC041 protein /FL=gb:AF125102.1 gb:NM_016099.1 NM_016099 golgin A7 GOLGA7 51125 NM_001002296 /// NM_001174124 /// NM_016099 0018230 // peptidyl-L-cysteine S-palmitoylation // inferred from direct assay /// 0043001 // Golgi to plasma membrane protein transport // inferred from direct assay /// 0050821 // protein stabilization // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0002178 // palmitoyltransferase complex // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031228 // intrinsic component of Golgi membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 12.62 401.61 0.60 0.56 0.64 -4.61
221791_s_at 221791_s_at BG167522 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG167522 /FEA=EST /DB_XREF=gi:12674151 /DB_XREF=est:602342728F1 /CLONE=IMAGE:4452895 /UG=Hs.171774 hypothetical protein BG167522 translation machinery associated 7 homolog (S. cerevisiae) TMA7 51372 NM_015933 64.75 1903.30 0.60 0.57 0.64 -4.61
218995_s_at 218995_s_at NM_001955 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001955.1 /DEF=Homo sapiens endothelin 1 (EDN1), mRNA. /FEA=mRNA /GEN=EDN1 /PROD=endothelin 1 /DB_XREF=gi:4503460 /UG=Hs.2271 endothelin 1 /FL=gb:NM_001955.1 NM_001955 endothelin 1 EDN1 1906 NM_001168319 /// NM_001955 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001516 // prostaglandin biosynthetic process // inferred from direct assay /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001821 // histamine secretion // inferred from electronic annotation /// 0003100 // regulation of systemic arterial blood pressure by endothelin // inferred from direct assay /// 0006885 // regulation of pH // inferred from electronic annotation /// 0007166 // cell surface receptor signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007204 // positive regulation of cytosolic calcium ion concentration // inferred from direct assay /// 0007205 // protein kinase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from direct assay /// 0007507 // heart development // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007589 // body fluid secretion // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0010460 // positive regulation of heart rate // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // traceable author statement /// 0010613 // positive regulation of cardiac muscle hypertrophy // inferred from direct assay /// 0010870 // positive regulation of receptor biosynthetic process // inferred from direct assay /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014065 // phosphatidylinositol 3-kinase signaling // inferred from direct assay /// 0014824 // artery smooth muscle contraction // inferred from direct assay /// 0014824 // artery smooth muscle contraction // traceable author statement /// 0014826 // vein smooth muscle contraction // inferred from direct assay /// 0015758 // glucose transport // inferred from electronic annotation /// 0016049 // cell growth // inferred from electronic annotation /// 0019229 // regulation of vasoconstriction // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0030072 // peptide hormone secretion // inferred from direct assay /// 0030185 // nitric oxide transport // inferred from direct assay /// 0030195 // negative regulation of blood coagulation // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0031583 // phospholipase D-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0032269 // negative regulation of cellular protein metabolic process // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034392 // negative regulation of smooth muscle cell apoptotic process // inferred from electronic annotation /// 0035094 // response to nicotine // inferred from electronic annotation /// 0035810 // positive regulation of urine volume // inferred from electronic annotation /// 0035815 // positive regulation of renal sodium excretion // inferred from electronic annotation /// 0042045 // epithelial fluid transport // inferred from electronic annotation /// 0042310 // vasoconstriction // inferred from direct assay /// 0042313 // protein kinase C deactivation // inferred from direct assay /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042482 // positive regulation of odontogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0043179 // rhythmic excitation // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043507 // positive regulation of JUN kinase activity // inferred from direct assay /// 0045321 // leukocyte activation // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // traceable author statement /// 0045793 // positive regulation of cell size // inferred from direct assay /// 0045840 // positive regulation of mitosis // inferred from direct assay /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // inferred from direct assay /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0048016 // inositol phosphate-mediated signaling // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// 0051771 // negative regulation of nitric-oxide synthase biosynthetic process // inferred from direct assay /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0060137 // maternal process involved in parturition // inferred from electronic annotation /// 0060298 // positive regulation of sarcomere organization // inferred from mutant phenotype /// 0060585 // positive regulation of prostaglandin-endoperoxide synthase activity // inferred from mutant phenotype /// 0070101 // positive regulation of chemokine-mediated signaling pathway // inferred by curator /// 0071347 // cellular response to interleukin-1 // inferred from electronic annotation /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from direct assay /// 0005179 // hormone activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031707 // endothelin A receptor binding // inferred from direct assay /// 0031708 // endothelin B receptor binding // inferred from direct assay -71.78 1675.71 -0.60 0.57 0.64 -4.61
202974_at 202974_at NM_002436 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002436.2 /DEF=Homo sapiens membrane protein, palmitoylated 1 (55kD) (MPP1), mRNA. /FEA=mRNA /GEN=MPP1 /PROD=palmitoylated membrane protein 1 /DB_XREF=gi:6006024 /UG=Hs.1861 membrane protein, palmitoylated 1 (55kD) /FL=gb:BC002392.1 gb:M64925.1 gb:NM_002436.2 NM_002436 membrane protein, palmitoylated 1, 55kDa MPP1 4354 NM_001166460 /// NM_001166461 /// NM_001166462 /// NM_002436 0007165 // signal transduction // traceable author statement /// 0046939 // nucleotide phosphorylation // traceable author statement /// 0090022 // regulation of neutrophil chemotaxis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0032420 // stereocilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0004385 // guanylate kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 11.50 137.07 0.60 0.57 0.64 -4.61
209316_s_at 209316_s_at BC001465 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001465.1 /DEF=Homo sapiens, HBS1 (S. cerevisiae)-like, clone MGC:1869, mRNA, complete cds. /FEA=mRNA /PROD=HBS1 (S. cerevisiae)-like /DB_XREF=gi:12655212 /UG=Hs.221040 HBS1 (S. cerevisiae)-like /FL=gb:BC001465.1 gb:U87791.1 gb:NM_006620.1 BC001465 HBS1-like translational GTPase HBS1L 10767 NM_001145158 /// NM_001145207 /// NM_006620 /// XM_006715320 /// XR_245499 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation -11.00 303.12 -0.60 0.57 0.64 -4.61
218871_x_at 218871_x_at NM_018590 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018590.1 /DEF=Homo sapiens hypothetical protein PRO0082 (PRO0082), mRNA. /FEA=mRNA /GEN=PRO0082 /PROD=hypothetical protein PRO0082 /DB_XREF=gi:8923965 /UG=Hs.180758 hypothetical protein PRO0082 /FL=gb:AF116646.1 gb:NM_018590.1 NM_018590 chondroitin sulfate N-acetylgalactosaminyltransferase 2 CSGALNACT2 55454 NM_018590 /// XM_005271819 /// XM_005271820 /// XM_005271821 0005975 // carbohydrate metabolic process // traceable author statement /// 0030166 // proteoglycan biosynthetic process // inferred from direct assay /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0050650 // chondroitin sulfate proteoglycan biosynthetic process // inferred from direct assay /// 0050651 // dermatan sulfate proteoglycan biosynthetic process // inferred from direct assay /// 0050652 // dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // traceable author statement /// 0050653 // chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030173 // integral component of Golgi membrane // non-traceable author statement /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008376 // acetylgalactosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047237 // glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation 9.70 106.60 0.60 0.57 0.64 -4.61
211948_x_at 211948_x_at BG261071 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG261071 /FEA=EST /DB_XREF=gi:12770887 /DB_XREF=est:602372693F1 /CLONE=IMAGE:4480631 /UG=Hs.69559 KIAA1096 protein BG261071 proline-rich coiled-coil 2C PRRC2C 23215 NM_015172 /// XM_005245015 /// XM_005245016 /// XM_005245017 /// XM_005245018 /// XM_005245019 /// XM_005245020 /// XM_005245022 /// XM_005245023 /// XM_005245024 /// XM_005245025 /// XM_005245026 /// XM_005245027 /// XM_005245028 /// XM_005245029 /// XM_005245030 /// XM_006711238 /// XM_006711239 0016020 // membrane // inferred from direct assay 0008022 // protein C-terminus binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 12.60 232.80 0.60 0.57 0.64 -4.61
201725_at 201725_at NM_006023 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006023.1 /DEF=Homo sapiens D123 gene product (D123), mRNA. /FEA=mRNA /GEN=D123 /PROD=D123 gene product /DB_XREF=gi:5174422 /UG=Hs.82043 D123 gene product /FL=gb:BC001600.1 gb:D14878.1 gb:U27112.1 gb:NM_006023.1 NM_006023 cell division cycle 123 CDC123 8872 NM_006023 /// XM_005252638 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007346 // regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay 28.32 414.76 0.60 0.57 0.64 -4.61
221830_at 221830_at AI302106 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI302106 /FEA=EST /DB_XREF=gi:3961452 /DB_XREF=est:qn57h10.x1 /CLONE=IMAGE:1902403 /UG=Hs.301746 RAP2A, member of RAS oncogene family /FL=gb:NM_021033.1 AI302106 RAP2A, member of RAS oncogene family RAP2A 5911 NM_021033 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0031954 // positive regulation of protein autophosphorylation // inferred from direct assay /// 0032486 // Rap protein signal transduction // inferred from sequence or structural similarity /// 0034613 // cellular protein localization // inferred from direct assay /// 0045184 // establishment of protein localization // inferred from direct assay /// 0046328 // regulation of JNK cascade // inferred from direct assay /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 22.45 220.62 0.60 0.57 0.64 -4.61
211300_s_at 211300_s_at K03199 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:K03199.1 /DEF=Human p53 cellular tumor antigen mRNA, complete cds. /FEA=mRNA /GEN=TP53 /DB_XREF=gi:189478 /UG=Hs.1846 tumor protein p53 (Li-Fraumeni syndrome) /FL=gb:K03199.1 K03199 tumor protein p53 TP53 7157 NM_000546 /// NM_001126112 /// NM_001126113 /// NM_001126114 /// NM_001126115 /// NM_001126116 /// NM_001126117 /// NM_001126118 /// NM_001276695 /// NM_001276696 /// NM_001276697 /// NM_001276698 /// NM_001276699 /// NM_001276760 /// NM_001276761 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000733 // DNA strand renaturation // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0002309 // T cell proliferation involved in immune response // inferred from electronic annotation /// 0002326 // B cell lineage commitment // inferred from electronic annotation /// 0002360 // T cell lineage commitment // inferred from electronic annotation /// 0002931 // response to ischemia // inferred from electronic annotation /// 0006284 // base-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // inferred from mutant phenotype /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006461 // protein complex assembly // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // inferred from mutant phenotype /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006983 // ER overload response // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0007265 // Ras protein signal transduction // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from mutant phenotype /// 0007369 // gastrulation // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007569 // cell aging // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0008104 // protein localization // inferred from direct assay /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008340 // determination of adult lifespan // inferred from sequence or structural similarity /// 0009303 // rRNA transcription // inferred from electronic annotation /// 0009411 // response to UV // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009792 // embryo development ending in birth or egg hatching // inferred from electronic annotation /// 0010165 // response to X-ray // not recorded /// 0010332 // response to gamma radiation // inferred from mutant phenotype /// 0010666 // positive regulation of cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030154 // cell differentiation // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0031497 // chromatin assembly // inferred from direct assay /// 0031571 // mitotic G1 DNA damage checkpoint // inferred from mutant phenotype /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0034103 // regulation of tissue remodeling // inferred from electronic annotation /// 0034613 // cellular protein localization // inferred from direct assay /// 0034644 // cellular response to UV // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043523 // regulation of neuron apoptotic process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // not recorded /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from expression pattern /// 0046902 // regulation of mitochondrial membrane permeability // traceable author statement /// 0048147 // negative regulation of fibroblast proliferation // inferred from mutant phenotype /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0051097 // negative regulation of helicase activity // traceable author statement /// 0051262 // protein tetramerization // traceable author statement /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0070243 // regulation of thymocyte apoptotic process // inferred from electronic annotation /// 0070245 // positive regulation of thymocyte apoptotic process // inferred from sequence or structural similarity /// 0071158 // positive regulation of cell cycle arrest // inferred from mutant phenotype /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0071479 // cellular response to ionizing radiation // inferred from mutant phenotype /// 0071850 // mitotic cell cycle arrest // inferred from electronic annotation /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0090343 // positive regulation of cell aging // inferred from electronic annotation /// 0090399 // replicative senescence // inferred from mutant phenotype /// 0090403 // oxidative stress-induced premature senescence // inferred from mutant phenotype /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 0097252 // oligodendrocyte apoptotic process // inferred from direct assay /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement /// 1901525 // negative regulation of macromitophagy // inferred from electronic annotation /// 1902108 // regulation of mitochondrial membrane permeability involved in apoptotic process // inferred from electronic annotation /// 2000378 // negative regulation of reactive oxygen species metabolic process // inferred from electronic annotation /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from mutant phenotype /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0000785 // chromatin // not recorded /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005657 // replication fork // not recorded /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016604 // nuclear body // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0002020 // protease binding // inferred from physical interaction /// 0002039 // p53 binding // not recorded /// 0003677 // DNA binding // inferred from mutant phenotype /// 0003682 // chromatin binding // inferred from direct assay /// 0003684 // damaged DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0035033 // histone deacetylase regulator activity // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction /// 0051721 // protein phosphatase 2A binding // inferred from physical interaction /// 0097371 // MDM2/MDM4 family protein binding // inferred from electronic annotation -9.78 109.54 -0.60 0.57 0.64 -4.61
208775_at 208775_at D89729 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D89729.1 /DEF=Homo sapiens mRNA for CRM1 protein, complete cds. /FEA=mRNA /PROD=CRM1 protein /DB_XREF=gi:2626839 /UG=Hs.79090 exportin 1 (CRM1, yeast, homolog) /FL=gb:D89729.1 gb:NM_003400.2 D89729 exportin 1 XPO1 7514 NM_003400 /// XM_005264544 /// XM_005264546 /// XM_006712094 /// XM_006712095 /// XM_006712096 /// XM_006712097 0000055 // ribosomal large subunit export from nucleus // inferred from mutant phenotype /// 0000056 // ribosomal small subunit export from nucleus // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0006611 // protein export from nucleus // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010824 // regulation of centrosome duplication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0034504 // protein localization to nucleus // inferred from electronic annotation /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0046825 // regulation of protein export from nucleus // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0075733 // intracellular transport of virus // traceable author statement 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // traceable author statement /// 0005642 // annulate lamellae // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0015030 // Cajal body // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0005215 // transporter activity // traceable author statement /// 0005487 // nucleocytoplasmic transporter activity // inferred from mutant phenotype /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 41.53 708.61 0.59 0.57 0.64 -4.61
218329_at 218329_at NM_012406 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012406.2 /DEF=Homo sapiens PR domain containing 4 (PRDM4), mRNA. /FEA=mRNA /GEN=PRDM4 /PROD=PR domain containing 4 /DB_XREF=gi:9055315 /UG=Hs.21807 PR domain containing 4 /FL=gb:AF144757.2 gb:NM_012406.2 NM_012406 PR domain containing 4 PRDM4 11108 NM_012406 /// XM_005268593 /// XM_006719205 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0032259 // methylation // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 16.13 135.31 0.59 0.57 0.65 -4.61
209186_at 209186_at M23114 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M23114.1 /DEF=Homo sapiens calcium-ATPase (HK1) mRNA, complete cds. /FEA=mRNA /GEN=HK1 /DB_XREF=gi:184100 /UG=Hs.1526 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 /FL=gb:M23114.1 M23114 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 ATP2A2 488 NM_001135765 /// NM_001681 /// NM_170665 /// XM_005253888 /// XR_243009 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0006984 // ER-nucleus signaling pathway // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008544 // epidermis development // traceable author statement /// 0010460 // positive regulation of heart rate // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0055119 // relaxation of cardiac muscle // traceable author statement /// 0070296 // sarcoplasmic reticulum calcium ion transport // traceable author statement /// 0070588 // calcium ion transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // traceable author statement /// 0086036 // regulation of cardiac muscle cell membrane potential // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0031095 // platelet dense tubular network membrane // traceable author statement /// 0033017 // sarcoplasmic reticulum membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019829 // cation-transporting ATPase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0044548 // S100 protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0086039 // calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential // traceable author statement 22.22 907.76 0.59 0.57 0.65 -4.61
203835_at 203835_at NM_005512 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005512.1 /DEF=Homo sapiens glycoprotein A repetitions predominant (GARP), mRNA. /FEA=mRNA /GEN=GARP /PROD=glycoprotein A repetitions predominantprecursor /DB_XREF=gi:5031706 /UG=Hs.151641 glycoprotein A repetitions predominant /FL=gb:Z24680.1 gb:NM_005512.1 NM_005512 leucine rich repeat containing 32 LRRC32 2615 NM_001128922 /// NM_005512 /// XM_005273902 /// XM_005273903 /// XR_428911 0002755 // MyD88-dependent toll-like receptor signaling pathway // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0034170 // toll-like receptor 11 signaling pathway // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0046007 // negative regulation of activated T cell proliferation // inferred from electronic annotation /// 0050710 // negative regulation of cytokine secretion // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 11.75 135.80 0.59 0.57 0.65 -4.61
203748_x_at 203748_x_at NM_016839 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016839.1 /DEF=Homo sapiens RNA binding motif, single stranded interacting protein 1 (RBMS1), transcript variant MSSP-2, mRNA. /FEA=mRNA /GEN=RBMS1 /PROD=RNA binding motif, single stranded interactingprotein 1, isoform b /DB_XREF=gi:8400723 /UG=Hs.241567 RNA binding motif, single stranded interacting protein 1 /FL=gb:NM_016839.1 NM_016839 RNA binding motif, single stranded interacting protein 1 RBMS1 5937 NM_002897 /// NM_016836 /// NM_016839 /// XM_005246737 /// XM_005246738 /// XM_005246739 /// XM_005246740 /// XM_005246741 /// XM_006712671 /// XM_006712672 /// XM_006712673 /// XM_006712674 /// XM_006712675 0006260 // DNA replication // non-traceable author statement /// 0006396 // RNA processing // traceable author statement 0005634 // nucleus // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // non-traceable author statement /// 0003697 // single-stranded DNA binding // non-traceable author statement /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 13.75 416.73 0.59 0.57 0.65 -4.61
203621_at 203621_at NM_002492 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002492.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 (16kD, SGDH) (NDUFB5), mRNA. /FEA=mRNA /GEN=NDUFB5 /PROD=NADH dehydrogenase (ubiquinone) 1 betasubcomplex, 5 (16kD, SGDH) /DB_XREF=gi:4505362 /UG=Hs.19236 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 (16kD, SGDH) /FL=gb:BC005271.1 gb:AF047181.1 gb:NM_002492.1 NM_002492 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa NDUFB5 4711 NM_001199957 /// NM_001199958 /// NM_002492 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement -11.67 372.11 -0.59 0.57 0.65 -4.61
212018_s_at 212018_s_at AK000822 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK000822.1 /DEF=Homo sapiens cDNA FLJ20815 fis, clone ADSE01038, highly similar to AJ007398 Homo sapiens mRNA for PBK1 protein. /FEA=mRNA /DB_XREF=gi:7021134 /UG=Hs.85963 DKFZP564M182 protein AK000822 ribosomal L1 domain containing 1 RSL1D1 26156 NM_015659 0001649 // osteoblast differentiation // inferred from direct assay /// 0006412 // translation // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 17.10 177.47 0.58 0.58 0.65 -4.61
208737_at 208737_at BC003564 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003564.1 /DEF=Homo sapiens, ATPase, H+ transporting, lysosomal (vacuolar proton pump), member J, clone MGC:1970, mRNA, complete cds. /FEA=mRNA /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump), member J /DB_XREF=gi:13097719 /UG=Hs.90336 ATPase, H+ transporting, lysosomal (vacuolar proton pump), member J /FL=gb:BC003564.1 gb:AF038954.1 gb:NM_004888.1 BC003564 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 ATP6V1G1 9550 NM_004888 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015992 // proton transport // inferred from electronic annotation /// 0033572 // transferrin transport // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from physical interaction 31.38 479.54 0.58 0.58 0.65 -4.61
200730_s_at 200730_s_at BF576710 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF576710 /FEA=EST /DB_XREF=gi:11650422 /DB_XREF=est:602135085F1 /CLONE=IMAGE:4290141 /UG=Hs.227777 protein tyrosine phosphatase type IVA, member 1 /FL=gb:U48296.1 gb:NM_003463.1 BF576710 protein tyrosine phosphatase type IVA, member 1 PTP4A1 7803 NM_003463 /// XM_006715563 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // non-traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 9.67 290.74 0.58 0.58 0.65 -4.61
201972_at 201972_at AF113129 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF113129.1 /DEF=Homo sapiens vacuolar ATPase isoform VA68 mRNA, complete cds. /FEA=mRNA /PROD=vacuolar ATPase isoform VA68 /DB_XREF=gi:6523820 /UG=Hs.281866 ATPase, H+ transporting, lysosomal (vacuolar proton pump), alpha polypeptide, 70kD, isoform 1 /FL=gb:L09235.1 gb:NM_001690.1 gb:AF113129.1 AF113129 ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A ATP6V1A 523 NM_001690 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0033572 // transferrin transport // traceable author statement /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005902 // microvillus // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016469 // proton-transporting two-sector ATPase complex // traceable author statement /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 41.32 612.84 0.58 0.58 0.65 -4.61
65635_at 65635_at AL044097 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AL044097:DKFZp434M1928_s1 Homo sapiens cDNA, 3 end /clone=DKFZp434M1928 /clone_end=3' /gb=AL044097 /gi=5432324 /ug=Hs.29288 /len=605 AL044097 endo-beta-N-acetylglucosaminidase ENGASE 64772 NM_001042573 /// NM_022759 /// XM_006722015 /// XM_006722016 /// XM_006722017 /// XM_006722018 /// XM_006722019 /// XR_429918 /// XR_429919 /// XR_429920 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0033925 // mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity // inferred from electronic annotation -10.80 169.70 -0.58 0.58 0.65 -4.61
201261_x_at 201261_x_at BC002416 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002416.1 /DEF=Homo sapiens, biglycan, clone MGC:2298, mRNA, complete cds. /FEA=mRNA /PROD=biglycan /DB_XREF=gi:12803216 /UG=Hs.821 biglycan /FL=gb:BC002416.1 gb:BC004244.1 gb:J04599.1 gb:NM_001711.1 BC002416 biglycan BGN 633 NM_001711 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0030207 // chondroitin sulfate catabolic process // traceable author statement /// 0030208 // dermatan sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005796 // Golgi lumen // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0030133 // transport vesicle // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation -22.80 437.00 -0.58 0.58 0.65 -4.61
200050_at 200050_at NM_007145 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007145.1 /DEF=Homo sapiens zinc finger protein 146 (ZNF146), mRNA. /FEA=mRNA /GEN=ZNF146 /PROD=zinc finger protein 146 /DB_XREF=gi:6005965 /UG=Hs.301819 zinc finger protein 146 /FL=gb:BC005154.1 gb:NM_007145.1 NM_007145 zinc finger protein 146 ZNF146 7705 NM_001099638 /// NM_001099639 /// NM_007145 /// XM_005259214 0006355 // regulation of transcription, DNA-templated // not recorded 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008201 // heparin binding // traceable author statement /// 0008270 // zinc ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 12.77 283.84 0.58 0.58 0.65 -4.61
221773_at 221773_at AW575374 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW575374 /FEA=EST /DB_XREF=gi:7246913 /DB_XREF=est:UI-HF-BL0-adc-c-12-0-UI.s1 /CLONE=IMAGE:3060887 /UG=Hs.288555 Homo sapiens cDNA: FLJ22425 fis, clone HRC08686 AW575374 ELK3, ETS-domain protein (SRF accessory protein 2) ELK3 2004 NM_005230 /// XM_006719275 0001525 // angiogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007165 // signal transduction // traceable author statement /// 0030154 // cell differentiation // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // not recorded /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0032422 // purine-rich negative regulatory element binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -43.85 811.73 -0.58 0.58 0.66 -4.61
210768_x_at 210768_x_at AF274935 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF274935.1 /DEF=Homo sapiens PNAS-10 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-10 /DB_XREF=gi:12751037 /UG=Hs.93832 putative membrane protein /FL=gb:AF274935.1 AF274935 transmembrane and coiled-coil domains 1 TMCO1 54499 NM_001256164 /// NM_001256165 /// NM_019026 /// NR_045818 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 11.52 169.21 0.58 0.58 0.66 -4.61
208829_at 208829_at AF029750 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF029750.1 /DEF=Homo sapiens tapasin (NGS-17) mRNA, complete cds. /FEA=mRNA /GEN=NGS-17 /PROD=tapasin /DB_XREF=gi:2587057 /UG=Hs.179600 TAP binding protein (tapasin) /FL=gb:AF314222.1 gb:AF009510.1 gb:AF029750.1 gb:AB010639.1 gb:NM_003190.1 AF029750 TAP binding protein (tapasin) TAPBP 6892 NM_003190 /// NM_172208 /// NM_172209 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006461 // protein complex assembly // traceable author statement /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // non-traceable author statement /// 0006952 // defense response // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0015833 // peptide transport // traceable author statement /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042886 // amide transport // traceable author statement /// 0050823 // peptide antigen stabilization // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0042824 // MHC class I peptide loading complex // non-traceable author statement /// 0042825 // TAP complex // inferred from direct assay /// 0071556 // integral component of lumenal side of endoplasmic reticulum membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0015433 // peptide antigen-transporting ATPase activity // traceable author statement /// 0042288 // MHC class I protein binding // traceable author statement /// 0042605 // peptide antigen binding // traceable author statement /// 0046978 // TAP1 binding // inferred from physical interaction /// 0046978 // TAP1 binding // traceable author statement /// 0046979 // TAP2 binding // inferred from physical interaction /// 0046979 // TAP2 binding // traceable author statement /// 0051082 // unfolded protein binding // traceable author statement -11.82 208.49 -0.58 0.58 0.66 -4.61
203718_at 203718_at NM_006702 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006702.1 /DEF=Homo sapiens neuropathy target esterase (NTE), mRNA. /FEA=mRNA /GEN=NTE /PROD=neuropathy target esterase /DB_XREF=gi:5729950 /UG=Hs.5038 neuropathy target esterase /FL=gb:NM_006702.1 NM_006702 patatin-like phospholipase domain containing 6 PNPLA6 10908 NM_001166111 /// NM_001166112 /// NM_001166113 /// NM_001166114 /// NM_006702 0001525 // angiogenesis // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004622 // lysophospholipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -13.87 174.14 -0.58 0.58 0.66 -4.61
200009_at 200009_at NM_001494 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001494.2 /DEF=Homo sapiens GDP dissociation inhibitor 2 (GDI2), mRNA. /FEA=mRNA /GEN=GDI2 /PROD=GDP dissociation inhibitor 2 /DB_XREF=gi:6598322 /UG=Hs.56845 GDP dissociation inhibitor 2 /FL=gb:BC005145.1 gb:D13988.1 gb:NM_001494.2 NM_001494 GDP dissociation inhibitor 2 GDI2 2665 NM_001115156 /// NM_001494 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -53.78 1248.34 -0.57 0.58 0.66 -4.61
214334_x_at 214334_x_at N34846 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N34846 /FEA=EST /DB_XREF=gi:1155988 /DB_XREF=est:yy45e11.s1 /CLONE=IMAGE:276524 /UG=Hs.75416 DAZ associated protein 2 N34846 DAZ associated protein 2 DAZAP2 9802 NM_001136264 /// NM_001136266 /// NM_001136267 /// NM_001136268 /// NM_001136269 /// NM_014764 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0050699 // WW domain binding // inferred from physical interaction 51.42 835.19 0.57 0.59 0.66 -4.61
210554_s_at 210554_s_at BC002486 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002486.1 /DEF=Homo sapiens, C-terminal binding protein 2, clone MGC:1563, mRNA, complete cds. /FEA=mRNA /PROD=C-terminal binding protein 2 /DB_XREF=gi:12803334 /UG=Hs.171391 C-terminal binding protein 2 /FL=gb:BC002486.1 BC002486 C-terminal binding protein 2 CTBP2 1488 NM_001083914 /// NM_001290214 /// NM_001290215 /// NM_001329 /// NM_022802 /// XM_005269561 /// XM_005269562 /// XM_005269563 /// XM_005269564 /// XM_005269565 /// XM_005269567 /// XM_005269568 /// XM_005269569 /// XM_005269570 /// XM_005269571 /// XM_005269572 /// XM_006717641 /// XM_006717642 /// XM_006717643 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0019079 // viral genome replication // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 47.70 599.58 0.57 0.59 0.66 -4.61
200806_s_at 200806_s_at BE256479 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE256479 /FEA=EST /DB_XREF=gi:9126938 /DB_XREF=est:601111293F1 /CLONE=IMAGE:3352031 /UG=Hs.79037 heat shock 60kD protein 1 (chaperonin) /FL=gb:BC002676.1 gb:BC003030.1 gb:M34664.1 gb:M22382.1 gb:NM_002156.1 BE256479 heat shock 60kDa protein 1 (chaperonin) HSPD1 3329 NM_002156 /// NM_199440 /// XM_005246518 0002368 // B cell cytokine production // inferred from direct assay /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // inferred from direct assay /// 0002842 // positive regulation of T cell mediated immune response to tumor cell // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006457 // protein folding // inferred from electronic annotation /// 0006458 // 'de novo' protein folding // inferred from sequence or structural similarity /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay /// 0008219 // cell death // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032727 // positive regulation of interferon-alpha production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from sequence or structural similarity /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0042026 // protein refolding // inferred from direct assay /// 0042100 // B cell proliferation // inferred from direct assay /// 0042110 // T cell activation // inferred from direct assay /// 0042113 // B cell activation // inferred from direct assay /// 0043032 // positive regulation of macrophage activation // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0048291 // isotype switching to IgG isotypes // inferred from direct assay /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050870 // positive regulation of T cell activation // inferred from direct assay /// 0050870 // positive regulation of T cell activation // inferred from sequence or structural similarity /// 0051131 // chaperone-mediated protein complex assembly // inferred from sequence or structural similarity /// 0051604 // protein maturation // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // traceable author statement /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // inferred from direct assay /// 0030135 // coated vesicle // inferred from direct assay /// 0030141 // secretory granule // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0046696 // lipopolysaccharide receptor complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // inferred from direct assay /// 0002039 // p53 binding // inferred from physical interaction /// 0003688 // DNA replication origin binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred by curator /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity /// 0051087 // chaperone binding // inferred from physical interaction 31.43 942.04 0.57 0.59 0.66 -4.61
208968_s_at 208968_s_at BC002568 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002568.1 /DEF=Homo sapiens, hypothetical protein, clone MGC:2478, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein /DB_XREF=gi:12803484 /UG=Hs.4900 hypothetical protein /FL=gb:AF248964.1 gb:BC002568.1 gb:AF116609.1 BC002568 cytokine induced apoptosis inhibitor 1 CIAPIN1 57019 NM_020313 /// XM_005256061 /// XM_005256062 /// XM_005256063 0006915 // apoptotic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 12.85 397.93 0.57 0.59 0.66 -4.61
208691_at 208691_at BC001188 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001188.1 /DEF=Homo sapiens, transferrin receptor (p90, CD71), clone MGC:3151, mRNA, complete cds. /FEA=mRNA /PROD=transferrin receptor (p90, CD71) /DB_XREF=gi:12654696 /UG=Hs.77356 transferrin receptor (p90, CD71) /FL=gb:BC001188.1 gb:M11507.1 BC001188 transferrin receptor TFRC 7037 NM_001128148 /// NM_003234 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // non-traceable author statement /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // non-traceable author statement /// 0006898 // receptor-mediated endocytosis // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0033572 // transferrin transport // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0045780 // positive regulation of bone resorption // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0097286 // iron ion import // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0003725 // double-stranded RNA binding // inferred from direct assay /// 0004998 // transferrin receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -26.35 946.52 -0.57 0.59 0.66 -4.61
218934_s_at 218934_s_at NM_014424 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014424.1 /DEF=Homo sapiens heat shock 27kD protein family, member 7 (cardiovascular) (HSPB7), mRNA. /FEA=mRNA /GEN=HSPB7 /PROD=heat shock 27kD protein family, member 7(cardiovascular) /DB_XREF=gi:7657201 /UG=Hs.56874 heat shock 27kD protein family, member 7 (cardiovascular) /FL=gb:AF155908.1 gb:NM_014424.1 NM_014424 heat shock 27kDa protein family, member 7 (cardiovascular) HSPB7 27129 NM_014424 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0008016 // regulation of heart contraction // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0031005 // filamin binding // inferred from electronic annotation 8.72 51.91 0.56 0.59 0.66 -4.61
201916_s_at 201916_s_at NM_007214 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007214.1 /DEF=Homo sapiens SEC63, endoplasmic reticulum translocon component (S. cerevisiae) like (SEC63L), mRNA. /FEA=mRNA /GEN=SEC63L /PROD=SEC63, endoplasmic reticulum transloconcomponent (S. cerevisiae) like /DB_XREF=gi:6005871 /UG=Hs.31575 SEC63, endoplasmic reticulum translocon component (S. cerevisiae) like /FL=gb:AF100141.1 gb:NM_007214.1 NM_007214 SEC63 homolog (S. cerevisiae) SEC63 11231 NM_007214 /// NM_018529 0001889 // liver development // inferred from electronic annotation /// 0006612 // protein targeting to membrane // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from mutant phenotype /// 0006620 // posttranslational protein targeting to membrane // inferred from mutant phenotype /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0031204 // posttranslational protein targeting to membrane, translocation // inferred from electronic annotation /// 0072001 // renal system development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -15.90 297.18 -0.56 0.59 0.66 -4.61
207630_s_at 207630_s_at NM_001881 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001881.1 /DEF=Homo sapiens cAMP responsive element modulator (CREM), mRNA. /FEA=mRNA /GEN=CREM /PROD=cAMP responsive element modulator /DB_XREF=gi:4503038 /UG=Hs.155924 cAMP responsive element modulator /FL=gb:NM_001881.1 gb:S68271.1 NM_001881 cAMP responsive element modulator CREM 1390 NM_001267562 /// NM_001267563 /// NM_001267564 /// NM_001267565 /// NM_001267566 /// NM_001267567 /// NM_001267568 /// NM_001267569 /// NM_001267570 /// NM_001881 /// NM_181571 /// NM_182717 /// NM_182718 /// NM_182719 /// NM_182720 /// NM_182721 /// NM_182722 /// NM_182723 /// NM_182724 /// NM_182725 /// NM_182769 /// NM_182770 /// NM_182771 /// NM_182772 /// NM_182850 /// NM_182853 /// NM_183011 /// NM_183012 /// NM_183013 /// NM_183060 /// NR_051971 /// NR_051972 /// NR_051973 /// NR_051974 /// NR_051975 /// XM_006717378 /// XM_006717379 /// XM_006717380 /// XM_006717381 /// XM_006717382 /// XM_006717383 /// XM_006717384 /// XM_006717385 /// XM_006717386 /// XM_006717387 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // non-traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008140 // cAMP response element binding protein binding // non-traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -10.22 137.79 -0.56 0.59 0.66 -4.61
222229_x_at 222229_x_at AL121871 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL121871 /DEF=Human DNA sequence from clone RP13-258O15 on chromosome Xq21.2-Xq21.33 Contains a pseudogene similar to ribosomal protein L26, STSs and GSSs /FEA=CDS /DB_XREF=gi:6855342 /UG=Hs.272344 Human DNA sequence from clone RP13-258O15 on chromosome Xq21.2-Xq21.33 Contains a pseudogene similar to ribosomal protein L26, STSs and GSSs AL121871 /// ribosomal protein L26 pseudogene 37 /// RP13-258O15.1 /// RPL26P37 /// RPL26P37 43.28 977.76 0.56 0.59 0.66 -4.61
213531_s_at 213531_s_at AI040009 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI040009 /FEA=EST /DB_XREF=gi:3279203 /DB_XREF=est:ox97e08.x1 /CLONE=IMAGE:1664294 /UG=Hs.309509 Human mRNA related to a calmodulin-like, processed pseudogene (302 bp identical to the 3 untranslated region) AI040009 RAB3 GTPase activating protein subunit 1 (catalytic) RAB3GAP1 22930 NM_001172435 /// NM_012233 /// XR_427077 /// XR_427078 0007420 // brain development // inferred from mutant phenotype /// 0021854 // hypothalamus development // inferred from mutant phenotype /// 0032851 // positive regulation of Rab GTPase activity // inferred from direct assay /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0034389 // lipid particle organization // inferred from mutant phenotype /// 0043010 // camera-type eye development // inferred from mutant phenotype /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from physical interaction 12.58 332.51 0.56 0.59 0.66 -4.61
201991_s_at 201991_s_at BF223224 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF223224 /FEA=EST /DB_XREF=gi:11130401 /DB_XREF=est:7q30g05.x1 /CLONE=IMAGE:3700017 /UG=Hs.149436 kinesin family member 5B /FL=gb:NM_004521.1 BF223224 kinesin family member 5B KIF5B 3799 NM_004521 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007018 // microtubule-based movement // traceable author statement /// 0007028 // cytoplasm organization // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0035617 // stress granule disassembly // inferred from sequence or structural similarity /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement /// 0047496 // vesicle transport along microtubule // inferred from sequence or structural similarity /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043227 // membrane-bounded organelle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 25.75 581.20 0.56 0.59 0.66 -4.61
219269_at 219269_at NM_024567 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024567.1 /DEF=Homo sapiens hypothetical protein FLJ21616 (FLJ21616), mRNA. /FEA=mRNA /GEN=FLJ21616 /PROD=hypothetical protein FLJ21616 /DB_XREF=gi:13375737 /UG=Hs.14562 hypothetical protein FLJ21616 /FL=gb:NM_024567.1 NM_024567 homeobox containing 1 HMBOX1 79618 NM_001135726 /// NM_024567 /// XM_005273635 /// XM_005273636 /// XM_005273637 /// XM_005273638 /// XM_005273639 /// XM_005273640 /// XM_005273641 /// XM_006716396 /// XM_006716397 /// XM_006716398 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 18.75 176.93 0.56 0.59 0.66 -4.61
201185_at 201185_at NM_002775 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002775.1 /DEF=Homo sapiens protease, serine, 11 (IGF binding) (PRSS11), mRNA. /FEA=mRNA /GEN=PRSS11 /PROD=protease, serine, 11 (IGF binding) /DB_XREF=gi:4506140 /UG=Hs.75111 protease, serine, 11 (IGF binding) /FL=gb:D87258.1 gb:NM_002775.1 NM_002775 HtrA serine peptidase 1 HTRA1 5654 NM_002775 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation -16.08 532.06 -0.56 0.59 0.66 -4.61
218368_s_at 218368_s_at NM_016639 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016639.1 /DEF=Homo sapiens type I transmembrane protein Fn14 (FN14), mRNA. /FEA=mRNA /GEN=FN14 /PROD=type I transmembrane protein Fn14 /DB_XREF=gi:7706185 /UG=Hs.10086 type I transmembrane protein Fn14 /FL=gb:BC002718.1 gb:AB035480.1 gb:NM_016639.1 gb:AF191148.1 NM_016639 tumor necrosis factor receptor superfamily, member 12A TNFRSF12A 51330 NM_016639 0001525 // angiogenesis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0006931 // substrate-dependent cell migration, cell attachment to substrate // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0061041 // regulation of wound healing // inferred from direct assay /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0001726 // ruffle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 18.18 307.86 0.56 0.59 0.66 -4.61
208112_x_at 208112_x_at NM_006795 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006795.1 /DEF=Homo sapiens EH domain containing 1 (EHD1), mRNA. /FEA=mRNA /GEN=EHD1 /PROD=EH domain containing 1 /DB_XREF=gi:5803008 /UG=Hs.155119 EH domain containing 1 /FL=gb:AF099011.1 gb:NM_006795.1 NM_006795 EH-domain containing 1 EHD1 10938 NM_001282444 /// NM_001282445 /// NM_006795 /// XM_006718424 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0010886 // positive regulation of cholesterol storage // inferred from sequence or structural similarity /// 0016197 // endosomal transport // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0032456 // endocytic recycling // inferred from genetic interaction /// 0032456 // endocytic recycling // inferred from mutant phenotype /// 0034383 // low-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from physical interaction /// 1901741 // positive regulation of myoblast fusion // inferred from sequence or structural similarity /// 1990090 // cellular response to nerve growth factor stimulus // inferred from sequence or structural similarity /// 2001137 // positive regulation of endocytic recycling // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0010008 // endosome membrane // inferred from sequence or structural similarity /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031095 // platelet dense tubular network membrane // inferred from sequence or structural similarity /// 0031901 // early endosome membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 19.75 215.75 0.56 0.59 0.66 -4.61
207198_s_at 207198_s_at NM_004987 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004987.2 /DEF=Homo sapiens LIM and senescent cell antigen-like domains 1 (LIMS1), mRNA. /FEA=mRNA /GEN=LIMS1 /PROD=LIM and senescent cell antigen-like domains 1 /DB_XREF=gi:13518025 /UG=Hs.112378 LIM and senescent cell antigen-like domains 1 /FL=gb:U09284.2 gb:NM_004987.2 NM_004987 LIM and senescent cell antigen-like domains 1 /// LIM and senescent cell antigen-like domains 3-like LIMS1 /// LIMS3L 3987 /// 100288695 NM_001193482 /// NM_001193483 /// NM_001193484 /// NM_001193485 /// NM_001193488 /// NM_001205288 /// NM_004987 /// NR_038099 /// XM_005263563 /// XM_005263946 /// XM_005263947 /// XM_005263948 /// XM_005263949 /// XM_005263950 /// XM_005263951 /// XM_006712167 /// XM_006712524 /// XR_244813 0007569 // cell aging // traceable author statement /// 0034329 // cell junction assembly // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -32.95 527.85 -0.56 0.59 0.66 -4.61
203310_at 203310_at NM_007269 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007269.1 /DEF=Homo sapiens syntaxin binding protein 3 (STXBP3), mRNA. /FEA=mRNA /GEN=STXBP3 /PROD=syntaxin 4 binding protein /DB_XREF=gi:6005885 /UG=Hs.8813 syntaxin binding protein 3 /FL=gb:D63506.1 gb:AF032922.1 gb:NM_007269.1 NM_007269 syntaxin binding protein 3 STXBP3 6814 NM_007269 0006810 // transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0043312 // neutrophil degranulation // inferred from expression pattern /// 0045955 // negative regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0070527 // platelet aggregation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031091 // platelet alpha granule // inferred from direct assay /// 0042581 // specific granule // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070820 // tertiary granule // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction 9.92 115.21 0.56 0.59 0.66 -4.61
217745_s_at 217745_s_at NM_025146 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025146.1 /DEF=Homo sapiens hypothetical protein FLJ13194 (FLJ13194), mRNA. /FEA=mRNA /GEN=FLJ13194 /PROD=hypothetical protein FLJ13194 /DB_XREF=gi:13376734 /UG=Hs.288932 hypothetical protein FLJ13194 /FL=gb:NM_025146.1 NM_025146 N(alpha)-acetyltransferase 50, NatE catalytic subunit NAA50 80218 NM_025146 /// XM_005247794 0006474 // N-terminal protein amino acid acetylation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from direct assay /// 0071962 // mitotic sister chromatid cohesion, centromeric // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0031415 // NatA complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004596 // peptide alpha-N-acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0010485 // H4 histone acetyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0052858 // peptidyl-lysine N-acetyltransferase activity // inferred from direct assay 29.28 323.99 0.56 0.59 0.66 -4.61
201810_s_at 201810_s_at AL562152 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL562152 /FEA=EST /DB_XREF=gi:12910291 /DB_XREF=est:AL562152 /CLONE=CS0DC001YK23 (3 prime) /UG=Hs.109150 SH3-domain binding protein 5 (BTK-associated) /FL=gb:AB005047.1 gb:NM_004844.1 AL562152 SH3-domain binding protein 5 (BTK-associated) SH3BP5 9467 NM_001018009 /// NM_004844 /// XM_006713420 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0035556 // intracellular signal transduction // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation 18.53 203.46 0.56 0.59 0.66 -4.61
40225_at 40225_at D88435 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. D88435:Homo sapiens mRNA for HsGAK, complete cds /cds=(0,3935) /gb=D88435 /gi=2506079 /ug=Hs.153227 /len=4331 D88435 cyclin G associated kinase GAK 2580 NM_001286833 /// NM_005255 /// XM_005272268 /// XM_005272269 /// XM_005272270 /// XM_005272272 /// XM_005272273 /// XM_006713874 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -14.42 273.51 -0.56 0.59 0.66 -4.61
213794_s_at 213794_s_at AI269117 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI269117 /FEA=EST /DB_XREF=gi:3888284 /DB_XREF=est:qj73e04.x1 /CLONE=IMAGE:1865118 /UG=Hs.9043 DKFZP564O092 protein AI269117 neuroguidin, EIF4E binding protein NGDN 25983 NM_001042635 /// NM_015514 0006417 // regulation of translation // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay 10.03 177.19 0.56 0.59 0.66 -4.61
202188_at 202188_at NM_014669 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014669.1 /DEF=Homo sapiens KIAA0095 gene product (KIAA0095), mRNA. /FEA=mRNA /GEN=KIAA0095 /PROD=KIAA0095 gene product /DB_XREF=gi:7661901 /UG=Hs.155314 KIAA0095 gene product /FL=gb:D42085.1 gb:NM_014669.1 NM_014669 nucleoporin 93kDa NUP93 9688 NM_001242795 /// NM_001242796 /// NM_014669 /// XM_005256263 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051292 // nuclear pore complex assembly // inferred from mutant phenotype /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0034399 // nuclear periphery // inferred from direct assay 0017056 // structural constituent of nuclear pore // inferred from mutant phenotype 8.68 94.29 0.56 0.59 0.66 -4.61
219489_s_at 219489_s_at NM_017821 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017821.1 /DEF=Homo sapiens hypothetical protein FLJ20435 (FLJ20435), mRNA. /FEA=mRNA /GEN=FLJ20435 /PROD=hypothetical protein FLJ20435 /DB_XREF=gi:8923408 /UG=Hs.11408 hypothetical protein FLJ20435 /FL=gb:NM_017821.1 NM_017821 nucleoredoxin NXN 64359 NM_001205319 /// NM_022463 /// XM_005256756 /// XM_005256757 /// XM_005256758 0006508 // proteolysis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030178 // negative regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0072358 // cardiovascular system development // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004791 // thioredoxin-disulfide reductase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047134 // protein-disulfide reductase activity // inferred from electronic annotation -11.53 232.46 -0.56 0.59 0.66 -4.61
218320_s_at 218320_s_at NM_019056 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_019056.1 /DEF=Homo sapiens similar to mouse neuronal protein 15.6 (FLJ20494), mRNA. /FEA=mRNA /GEN=FLJ20494 /PROD=similar to mouse neuronal protein 15.6 /DB_XREF=gi:9506682 /UG=Hs.111497 similar to mouse neuronal protein 15.6 /FL=gb:NM_019056.1 NM_019056 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa NDUFB11 54539 NM_001135998 /// NM_019056 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation -14.47 270.69 -0.56 0.59 0.66 -4.61
201457_x_at 201457_x_at AF081496 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF081496.1 /DEF=Homo sapiens kinetochore protein BUB3 (BUB3) mRNA, complete cds. /FEA=mRNA /GEN=BUB3 /PROD=kinetochore protein BUB3 /DB_XREF=gi:3639059 /UG=Hs.40323 BUB3 (budding uninhibited by benzimidazoles 3, yeast) homolog /FL=gb:BC005138.1 gb:AF047472.1 gb:AF053304.1 gb:AF081496.1 gb:NM_004725.1 AF081496 BUB3 mitotic checkpoint protein BUB3 9184 NM_001007793 /// NM_004725 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051983 // regulation of chromosome segregation // inferred from electronic annotation /// 0071173 // spindle assembly checkpoint // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction 17.17 596.31 0.56 0.59 0.66 -4.61
203630_s_at 203630_s_at NM_006348 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006348.1 /DEF=Homo sapiens golgi transport complex 1 (90 kDa subunit) (GOLTC1), mRNA. /FEA=mRNA /GEN=GOLTC1 /PROD=golgi transport complex 1 (90 kDa subunit) /DB_XREF=gi:5453669 /UG=Hs.239631 golgi transport complex 1 (90 kDa subunit) /FL=gb:AF058718.1 gb:NM_006348.1 NM_006348 component of oligomeric golgi complex 5 COG5 10466 NM_001161520 /// NM_006348 /// NM_181733 0006810 // transport // inferred from electronic annotation /// 0006891 // intra-Golgi vesicle-mediated transport // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from direct assay /// 0017119 // Golgi transport complex // non-traceable author statement 0005515 // protein binding // inferred from physical interaction -21.65 235.20 -0.56 0.59 0.67 -4.61
216080_s_at 216080_s_at AC004770 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC004770 /DEF=Homo sapiens chromosome 11, BAC CIT-HSP-311e8 (BC269730) containing the hFEN1 gene /FEA=CDS_3 /DB_XREF=gi:3212836 /UG=Hs.21765 fatty acid desaturase 3 AC004770 fatty acid desaturase 3 FADS3 3995 NM_021727 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // non-traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation -34.50 491.00 -0.56 0.59 0.67 -4.61
216326_s_at 216326_s_at AF059650 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF059650 /DEF=Homo sapiens histone deacetylase 3 (HDAC3) gene, complete cds /FEA=mRNA /DB_XREF=gi:3320449 /UG=Hs.279789 histone deacetylase 3 AF059650 histone deacetylase 3 HDAC3 8841 NM_003883 /// XM_006714802 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006476 // protein deacetylation // inferred from direct assay /// 0007219 // Notch signaling pathway // traceable author statement /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010832 // negative regulation of myotube differentiation // inferred from mutant phenotype /// 0016568 // chromatin modification // traceable author statement /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045786 // negative regulation of cell cycle // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0046329 // negative regulation of JNK cascade // inferred from mutant phenotype /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051225 // spindle assembly // inferred from mutant phenotype /// 0070932 // histone H3 deacetylation // inferred from electronic annotation /// 0070933 // histone H4 deacetylation // inferred from electronic annotation 0000118 // histone deacetylase complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005876 // spindle microtubule // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0004407 // histone deacetylase activity // inferred from mutant phenotype /// 0004407 // histone deacetylase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030332 // cyclin binding // inferred from physical interaction /// 0031078 // histone deacetylase activity (H3-K14 specific) // inferred from electronic annotation /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0032041 // NAD-dependent histone deacetylase activity (H3-K14 specific) // inferred from electronic annotation /// 0032129 // histone deacetylase activity (H3-K9 specific) // inferred from electronic annotation /// 0033558 // protein deacetylase activity // inferred from direct assay /// 0034739 // histone deacetylase activity (H4-K16 specific) // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0046969 // NAD-dependent histone deacetylase activity (H3-K9 specific) // inferred from electronic annotation /// 0046970 // NAD-dependent histone deacetylase activity (H4-K16 specific) // inferred from electronic annotation /// 0097372 // NAD-dependent histone deacetylase activity (H3-K18 specific) // inferred from electronic annotation 7.42 118.76 0.56 0.59 0.67 -4.61
217934_x_at 217934_x_at NM_005861 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005861.1 /DEF=Homo sapiens STIP1 homology and U-Box containing protein 1 (STUB1), mRNA. /FEA=mRNA /GEN=STUB1 /PROD=serologically defined colon cancer antigen 7 /DB_XREF=gi:5031962 /UG=Hs.25197 STIP1 homology and U-Box containing protein 1 /FL=gb:AF039689.1 gb:AF129085.1 gb:NM_005861.1 NM_005861 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase STUB1 10273 NM_001293197 /// NM_005861 0000209 // protein polyubiquitination // inferred from direct assay /// 0000209 // protein polyubiquitination // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0006515 // misfolded or incompletely synthesized protein catabolic process // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0030579 // ubiquitin-dependent SMAD protein catabolic process // inferred from direct assay /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0031943 // regulation of glucocorticoid metabolic process // inferred from direct assay /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0051604 // protein maturation // traceable author statement /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0071218 // cellular response to misfolded protein // inferred from direct assay /// 0090035 // positive regulation of chaperone-mediated protein complex assembly // inferred from direct assay 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0031371 // ubiquitin conjugating enzyme complex // traceable author statement /// 0042405 // nuclear inclusion body // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0004842 // ubiquitin-protein transferase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein transferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from direct assay /// 0030674 // protein binding, bridging // traceable author statement /// 0030911 // TPR domain binding // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046332 // SMAD binding // inferred from direct assay /// 0051787 // misfolded protein binding // inferred from direct assay /// 0051879 // Hsp90 protein binding // inferred from direct assay 18.70 277.73 0.56 0.59 0.67 -4.61
205238_at 205238_at NM_024917 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024917.1 /DEF=Homo sapiens hypothetical protein FLJ12687 (FLJ12687), mRNA. /FEA=mRNA /GEN=FLJ12687 /PROD=hypothetical protein FLJ12687 /DB_XREF=gi:13376385 /UG=Hs.263216 hypothetical protein FLJ12687 /FL=gb:NM_024917.1 NM_024917 tRNA methyltransferase 2 homolog B (S. cerevisiae) TRMT2B 79979 NM_001167970 /// NM_001167971 /// NM_001167972 /// NM_024917 /// XM_005262195 /// XM_005262196 /// XM_005262197 /// XM_005262199 /// XM_005262200 /// XM_005262201 /// XM_006724705 /// XM_006724706 /// XM_006724707 0006396 // RNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008173 // RNA methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030697 // S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity // inferred from electronic annotation 8.23 124.36 0.55 0.60 0.67 -4.61
212297_at 212297_at BF218804 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF218804 /FEA=EST /DB_XREF=gi:11112494 /DB_XREF=est:601882315F1 /CLONE=IMAGE:4094786 /UG=Hs.4934 H.sapiens polyA site DNA BF218804 ATPase type 13A3 ATP13A3 79572 NM_024524 /// XM_005269357 /// XM_005269358 /// XM_005269360 /// XM_006713742 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0019829 // cation-transporting ATPase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 14.72 211.11 0.55 0.60 0.67 -4.61
201903_at 201903_at NM_003365 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003365.1 /DEF=Homo sapiens ubiquinol-cytochrome c reductase core protein I (UQCRC1), mRNA. /FEA=mRNA /GEN=UQCRC1 /PROD=ubiquinol-cytochrome c reductase core protein I /DB_XREF=gi:4507840 /UG=Hs.119251 ubiquinol-cytochrome c reductase core protein I /FL=gb:L16842.1 gb:NM_003365.1 gb:D26485.1 NM_003365 ubiquinol-cytochrome c reductase core protein I UQCRC1 7384 NM_003365 0006119 // oxidative phosphorylation // traceable author statement /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009060 // aerobic respiration // traceable author statement /// 0014823 // response to activity // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0043279 // response to alkaloid // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // traceable author statement /// 0005750 // mitochondrial respiratory chain complex III // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008121 // ubiquinol-cytochrome-c reductase activity // traceable author statement /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 20.75 326.98 0.55 0.60 0.67 -4.61
216508_x_at 216508_x_at AC007277 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC007277 /DEF=Homo sapiens BAC clone RP11-244E6 from 2 /FEA=CDS /DB_XREF=gi:5091647 /UG=Hs.283906 Homo sapiens BAC clone RP11-244E6 from 2 AC007277 high mobility group box 1 pseudogene 4 /// HMGB1P4 /// HMGB1P4 11.45 254.62 0.55 0.60 0.67 -4.61
212016_s_at 212016_s_at AA679988 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA679988 /FEA=EST /DB_XREF=gi:2656455 /DB_XREF=est:ag51f11.s1 /CLONE=IMAGE:1126509 /UG=Hs.172550 polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) AA679988 microRNA 4745 /// polypyrimidine tract binding protein 1 MIR4745 /// PTBP1 5725 /// 100616459 NM_002819 /// NM_031990 /// NM_031991 /// NM_175847 /// NR_039900 /// XM_005259597 /// XM_005259598 /// XR_244034 /// XR_244035 0000380 // alternative mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0033119 // negative regulation of RNA splicing // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay /// 0051148 // negative regulation of muscle cell differentiation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008187 // poly-pyrimidine tract binding // traceable author statement /// 0036002 // pre-mRNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -10.60 197.35 -0.55 0.60 0.67 -4.61
201719_s_at 201719_s_at NM_001431 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001431.1 /DEF=Homo sapiens erythrocyte membrane protein band 4.1-like 2 (EPB41L2), mRNA. /FEA=mRNA /GEN=EPB41L2 /PROD=erythrocyte membrane protein band 4.1-like 2 /DB_XREF=gi:4503578 /UG=Hs.7857 erythrocyte membrane protein band 4.1-like 2 /FL=gb:AF027299.1 gb:NM_001431.1 NM_001431 erythrocyte membrane protein band 4.1-like 2 EPB41L2 2037 NM_001135554 /// NM_001135555 /// NM_001199388 /// NM_001199389 /// NM_001252660 /// NM_001431 /// XM_005266840 /// XM_005266841 /// XM_006715356 /// XM_006715357 /// XM_006715358 /// XM_006715359 /// XM_006715360 /// XM_006715361 /// XM_006715362 /// XM_006715363 /// XM_006715364 /// XM_006715365 /// XM_006715366 /// XM_006715367 /// XM_006715368 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0030507 // spectrin binding // inferred from electronic annotation /// 0042731 // PH domain binding // inferred from electronic annotation -14.50 143.18 -0.55 0.60 0.67 -4.61
214505_s_at 214505_s_at AF220153 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF220153.1 /DEF=Homo sapiens four and a half LIM domains 1 protein isoform C (FHL1) mRNA, complete cds, alternatively spliced. /FEA=CDS /GEN=FHL1 /PROD=four and a half LIM domains 1 protein isoform C /DB_XREF=gi:6942192 /UG=Hs.239069 four and a half LIM domains 1 /FL=gb:AF220153.1 AF220153 four and a half LIM domains 1 FHL1 2273 NM_001159699 /// NM_001159700 /// NM_001159701 /// NM_001159702 /// NM_001159703 /// NM_001159704 /// NM_001167819 /// NM_001449 /// NR_027621 /// XM_006724743 /// XM_006724744 /// XM_006724745 /// XM_006724746 /// XM_006724747 0003254 // regulation of membrane depolarization // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // non-traceable author statement /// 0009887 // organ morphogenesis // non-traceable author statement /// 0010972 // negative regulation of G2/M transition of mitotic cell cycle // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 1901016 // regulation of potassium ion transmembrane transporter activity // inferred from direct assay /// 2000134 // negative regulation of G1/S transition of mitotic cell cycle // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -12.00 111.70 -0.54 0.60 0.67 -4.61
210968_s_at 210968_s_at AF333336 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF333336.1 /DEF=Homo sapiens testis specific reticulon 5 protein mRNA, complete cds. /FEA=mRNA /PROD=testis specific reticulon 5 protein /DB_XREF=gi:13377627 /UG=Hs.65450 reticulon 4 /FL=gb:AF333336.1 AF333336 reticulon 4 RTN4 57142 NM_007008 /// NM_020532 /// NM_153828 /// NM_207520 /// NM_207521 /// XM_005264434 0001525 // angiogenesis // inferred from electronic annotation /// 0006915 // apoptotic process // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007413 // axonal fasciculation // inferred from sequence or structural similarity /// 0021801 // cerebral cortex radial glia guided migration // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030334 // regulation of cell migration // inferred from direct assay /// 0030517 // negative regulation of axon extension // inferred from direct assay /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050770 // regulation of axonogenesis // traceable author statement /// 0050771 // negative regulation of axonogenesis // traceable author statement /// 0051960 // regulation of nervous system development // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // inferred from electronic annotation /// 0071786 // endoplasmic reticulum tubular network organization // inferred from mutant phenotype /// 2000172 // regulation of branching morphogenesis of a nerve // inferred from sequence or structural similarity 0005622 // intracellular // inferred from mutant phenotype /// 0005635 // nuclear envelope // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 82.70 1685.00 0.54 0.60 0.67 -4.61
202180_s_at 202180_s_at NM_017458 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017458.1 /DEF=Homo sapiens major vault protein (MVP), transcript variant 1, mRNA. /FEA=mRNA /GEN=MVP /PROD=major vault protein /DB_XREF=gi:9665254 /UG=Hs.80680 major vault protein /FL=gb:NM_017458.1 NM_017458 major vault protein MVP 9961 NM_001293204 /// NM_001293205 /// NM_005115 /// NM_017458 0006810 // transport // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0023057 // negative regulation of signaling // inferred from direct assay /// 0031953 // negative regulation of protein autophosphorylation // inferred from direct assay /// 0038127 // ERBB signaling pathway // inferred from direct assay /// 0051028 // mRNA transport // inferred from electronic annotation /// 0061099 // negative regulation of protein tyrosine kinase activity // inferred from direct assay /// 0072376 // protein activation cascade // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from direct assay -11.58 162.41 -0.54 0.60 0.68 -4.61
201777_s_at 201777_s_at BC002525 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002525.1 /DEF=Homo sapiens, KIAA0494 gene product, clone MGC:1949, mRNA, complete cds. /FEA=mRNA /PROD=KIAA0494 gene product /DB_XREF=gi:12803404 /UG=Hs.62515 KIAA0494 gene product /FL=gb:BC002525.1 gb:AB007963.1 gb:NM_014774.1 BC002525 EF-hand calcium binding domain 14 EFCAB14 9813 NM_014774 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 8.35 92.45 0.54 0.60 0.68 -4.61
215016_x_at 215016_x_at BC004912 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC004912.1 /DEF=Homo sapiens, clone IMAGE:3534745, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3534745) /DB_XREF=gi:13436208 /UG=Hs.198689 KIAA0728 protein BC004912 dystonin DST 667 NM_001144769 /// NM_001144770 /// NM_001144771 /// NM_001723 /// NM_015548 /// NM_020388 /// NM_183380 /// XM_005249310 /// XM_005249311 /// XM_005249312 /// XM_005249313 /// XM_005249314 /// XM_005249315 /// XM_005249316 /// XM_005249317 /// XM_005249318 /// XM_005249319 /// XM_005249320 /// XM_005249322 /// XM_005249323 /// XM_005249324 /// XM_005249325 /// XM_005249326 /// XM_006715169 0000226 // microtubule cytoskeleton organization // inferred from direct assay /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006620 // posttranslational protein targeting to membrane // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0009611 // response to wounding // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030011 // maintenance of cell polarity // inferred from mutant phenotype /// 0030198 // extracellular matrix organization // traceable author statement /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // inferred from direct assay /// 0045104 // intermediate filament cytoskeleton organization // inferred from expression pattern /// 0045104 // intermediate filament cytoskeleton organization // inferred from sequence or structural similarity /// 0045104 // intermediate filament cytoskeleton organization // non-traceable author statement /// 0048870 // cell motility // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005604 // basement membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0009925 // basal plasma membrane // non-traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from direct assay /// 0030056 // hemidesmosome // traceable author statement /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from direct assay /// 0031673 // H zone // inferred from electronic annotation /// 0035371 // microtubule plus-end // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0060053 // neurofilament cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016887 // ATPase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from direct assay -21.55 302.10 -0.54 0.60 0.68 -4.61
220027_s_at 220027_s_at NM_017805 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017805.1 /DEF=Homo sapiens hypothetical protein FLJ20401 (FLJ20401), mRNA. /FEA=mRNA /GEN=FLJ20401 /PROD=hypothetical protein FLJ20401 /DB_XREF=gi:8923375 /UG=Hs.233955 hypothetical protein FLJ20401 /FL=gb:NM_017805.1 NM_017805 Ras interacting protein 1 RASIP1 54922 NM_017805 /// XM_005259023 /// XM_005259024 /// XM_006723250 /// XM_006723251 /// XM_006723252 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0010507 // negative regulation of autophagy // inferred from mutant phenotype /// 0032319 // regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0048754 // branching morphogenesis of an epithelial tube // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 12.80 388.70 0.54 0.60 0.68 -4.61
213811_x_at 213811_x_at AW062341 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW062341 /FEA=EST /DB_XREF=gi:6013726 /DB_XREF=est:IL2-CT0031-080899-001-e09 /UG=Hs.101047 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12E47) AW062341 transcription factor 3 TCF3 6929 NM_001136139 /// NM_003200 /// XM_005259620 /// XM_006722852 /// XM_006722853 /// XM_006722854 /// XM_006722855 /// XM_006722856 /// XM_006722857 /// XM_006722858 /// XM_006722859 /// XM_006722860 /// XM_006722861 /// XM_006722862 /// XM_006722863 /// XR_430150 /// XR_430151 /// XR_430152 /// XR_430153 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0002326 // B cell lineage commitment // inferred from direct assay /// 0002326 // B cell lineage commitment // non-traceable author statement /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0030098 // lymphocyte differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // non-traceable author statement /// 0030890 // positive regulation of B cell proliferation // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033152 // immunoglobulin V(D)J recombination // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042692 // muscle cell differentiation // traceable author statement /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0048468 // cell development // inferred from electronic annotation /// 0048541 // Peyer's patch development // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from electronic annotation /// 0051091 // positive regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 2000045 // regulation of G1/S transition of mitotic cell cycle // inferred from direct assay 0000788 // nuclear nucleosome // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0001078 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070491 // repressing transcription factor binding // inferred from physical interaction /// 0070644 // vitamin D response element binding // inferred from direct assay /// 0070888 // E-box binding // inferred from direct assay /// 0070888 // E-box binding // inferred from sequence or structural similarity -17.85 204.55 -0.54 0.61 0.68 -4.61
208097_s_at 208097_s_at NM_030755 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030755.1 /DEF=Homo sapiens thioredoxin-related transmembrane protein (TMX), mRNA. /FEA=mRNA /GEN=TMX /PROD=thioredoxin-related transmembrane protein /DB_XREF=gi:13559515 /FL=gb:NM_030755.1 NM_030755 thioredoxin-related transmembrane protein 1 TMX1 81542 NM_030755 0006260 // DNA replication // non-traceable author statement /// 0006457 // protein folding // not recorded /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006950 // response to stress // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0008283 // cell proliferation // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0034976 // response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045321 // leukocyte activation // non-traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0045927 // positive regulation of growth // non-traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // not recorded /// 0015036 // disulfide oxidoreductase activity // inferred from direct assay /// 0030612 // arsenate reductase (thioredoxin) activity // non-traceable author statement -12.95 213.00 -0.54 0.61 0.68 -4.61
200063_s_at 200063_s_at BC002398 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002398.1 /DEF=Homo sapiens, nucleophosmin (nucleolar phosphoprotein B23, numatrin), clone MGC:8463, mRNA, complete cds. /FEA=mRNA /PROD=nucleophosmin (nucleolar phosphoprotein B23,numatrin) /DB_XREF=gi:12803184 /UG=Hs.9614 nucleophosmin (nucleolar phosphoprotein B23, numatrin) /FL=gb:NM_002520.1 gb:BC002398.1 gb:BC003670.1 gb:M23613.1 gb:M26697.1 gb:M28699.1 BC002398 nucleophosmin (nucleolar phosphoprotein B23, numatrin) NPM1 4869 NM_001037738 /// NM_002520 /// NM_199185 /// XM_005265920 /// XM_006714869 0006281 // DNA repair // inferred from direct assay /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // traceable author statement /// 0006886 // intracellular protein transport // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0006913 // nucleocytoplasmic transport // traceable author statement /// 0006950 // response to stress // inferred from mutant phenotype /// 0007098 // centrosome cycle // inferred from mutant phenotype /// 0007098 // centrosome cycle // inferred from sequence or structural similarity /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0007569 // cell aging // inferred from mutant phenotype /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0010826 // negative regulation of centrosome duplication // inferred from mutant phenotype /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032071 // regulation of endodeoxyribonuclease activity // inferred from direct assay /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0042255 // ribosome assembly // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // non-traceable author statement /// 0044387 // negative regulation of protein kinase activity by regulation of protein phosphorylation // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay /// 0046599 // regulation of centriole replication // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0060699 // regulation of endoribonuclease activity // inferred from direct assay /// 0060735 // regulation of eIF2 alpha phosphorylation by dsRNA // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031616 // spindle pole centrosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003723 // RNA binding // inferred from direct assay /// 0004860 // protein kinase inhibitor activity // inferred from direct assay /// 0004888 // transmembrane signaling receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0030957 // Tat protein binding // inferred from direct assay /// 0042393 // histone binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043023 // ribosomal large subunit binding // inferred from direct assay /// 0043024 // ribosomal small subunit binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0051059 // NF-kappaB binding // inferred from direct assay /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity -78.20 2381.38 -0.54 0.61 0.68 -4.61
219464_at 219464_at NM_012113 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012113.1 /DEF=Homo sapiens carbonic anhydrase XIV (CA14), mRNA. /FEA=mRNA /GEN=CA14 /PROD=carbonic anhydrase XIV precursor /DB_XREF=gi:6912283 /UG=Hs.235168 carbonic anhydrase XIV /FL=gb:AB025904.1 gb:NM_012113.1 NM_012113 carbonic anhydrase XIV CA14 23632 NM_012113 /// XM_005245059 /// XM_005245060 /// XM_006711259 /// XM_006711260 /// XM_006711261 0015701 // bicarbonate transport // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -8.13 71.56 -0.53 0.61 0.68 -4.61
204165_at 204165_at NM_003931 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003931.1 /DEF=Homo sapiens WAS protein family, member 1 (WASF1), mRNA. /FEA=mRNA /GEN=WASF1 /PROD=WAS protein family, member 1 /DB_XREF=gi:4507912 /UG=Hs.75850 WAS protein family, member 1 /FL=gb:D87459.1 gb:NM_003931.1 gb:AF134303.1 NM_003931 WAS protein family, member 1 WASF1 8936 NM_001024934 /// NM_001024935 /// NM_001024936 /// NM_003931 /// XM_005267203 /// XM_005267204 /// XM_005267205 /// XM_005267206 /// XM_005267207 /// XM_005267208 /// XM_006715595 0006461 // protein complex assembly // non-traceable author statement /// 0006928 // cellular component movement // traceable author statement /// 0016601 // Rac protein signal transduction // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030041 // actin filament polymerization // traceable author statement /// 0072673 // lamellipodium morphogenesis // inferred from electronic annotation /// 2000601 // positive regulation of Arp2/3 complex-mediated actin nucleation // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005856 // cytoskeleton // traceable author statement /// 0015629 // actin cytoskeleton // traceable author statement /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031209 // SCAR complex // inferred from mutant phenotype /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from mutant phenotype /// 0048365 // Rac GTPase binding // inferred from mutant phenotype -16.85 153.05 -0.53 0.61 0.68 -4.61
205263_at 205263_at AF082283 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF082283.1 /DEF=Homo sapiens CARD-containing apoptotic signaling protein (BCL10) mRNA, complete cds. /FEA=mRNA /GEN=BCL10 /PROD=CARD-containing apoptotic signaling protein /DB_XREF=gi:4092066 /UG=Hs.193516 B-cell CLLlymphoma 10 /FL=gb:AF082283.1 gb:AF057700.1 gb:AF100338.1 gb:NM_003921.1 gb:AF127386.1 gb:AF134395.1 gb:AF105066.1 AF082283 B-cell CLL/lymphoma 10 BCL10 8915 NM_003921 /// XM_005271311 0001783 // B cell apoptotic process // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from sequence or structural similarity /// 0002224 // toll-like receptor signaling pathway // inferred by curator /// 0002237 // response to molecule of bacterial origin // inferred from expression pattern /// 0002250 // adaptive immune response // traceable author statement /// 0002906 // negative regulation of mature B cell apoptotic process // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // inferred from direct assay /// 0006968 // cellular defense response // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0008219 // cell death // inferred from direct assay /// 0009620 // response to fungus // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0032094 // response to food // inferred from direct assay /// 0032765 // positive regulation of mast cell cytokine production // non-traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042109 // lymphotoxin A biosynthetic process // non-traceable author statement /// 0042221 // response to chemical // inferred from direct assay /// 0042226 // interleukin-6 biosynthetic process // non-traceable author statement /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // inferred from expression pattern /// 0045087 // innate immune response // traceable author statement /// 0045416 // positive regulation of interleukin-8 biosynthetic process // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0050856 // regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051259 // protein oligomerization // inferred from physical interaction /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // traceable author statement /// 0070231 // T cell apoptotic process // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 2001238 // positive regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0001772 // immunological synapse // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0032449 // CBM complex // non-traceable author statement /// 0042101 // T cell receptor complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0046696 // lipopolysaccharide receptor complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019209 // kinase activator activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from direct assay /// 0043422 // protein kinase B binding // inferred from physical interaction /// 0043621 // protein self-association // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from direct assay -29.58 593.79 -0.53 0.61 0.68 -4.61
213735_s_at 213735_s_at AI557312 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI557312 /FEA=EST /DB_XREF=gi:4489675 /DB_XREF=est:PT2.1_16_E11.r /UG=Hs.1342 cytochrome c oxidase subunit Vb AI557312 cytochrome c oxidase subunit Vb COX5B 1329 NM_001862 0007585 // respiratory gaseous exchange // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -33.90 714.92 -0.53 0.61 0.68 -4.61
200064_at 200064_at AF275719 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF275719.1 /DEF=Homo sapiens isolate Liv chaperone protein HSP90 beta (HSP90BETA) mRNA, complete cds. /FEA=mRNA /GEN=HSP90BETA /PROD=chaperone protein HSP90 beta /DB_XREF=gi:9082288 /UG=Hs.74335 heat shock 90kD protein 1, beta /FL=gb:BC004928.1 gb:M16660.1 gb:NM_007355.1 gb:AF275719.1 AF275719 heat shock protein 90kDa alpha (cytosolic), class B member 1 HSP90AB1 3326 NM_001271969 /// NM_001271970 /// NM_001271971 /// NM_001271972 /// NM_007355 /// NR_073528 /// XM_005249075 0001890 // placenta development // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009651 // response to salt stress // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // inferred from mutant phenotype /// 0060338 // regulation of type I interferon-mediated signaling pathway // inferred from mutant phenotype /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016234 // inclusion body // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002134 // UTP binding // inferred from electronic annotation /// 0002135 // CTP binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017098 // sulfonylurea receptor binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0030235 // nitric-oxide synthase regulator activity // inferred from sequence or structural similarity /// 0030911 // TPR domain binding // inferred from sequence or structural similarity /// 0032564 // dATP binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation -118.63 2640.36 -0.53 0.61 0.68 -4.61
208961_s_at 208961_s_at AB017493 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB017493.1 /DEF=Homo sapiens mRNA for DNA-binding zinc finger(GBF), complete cds. /FEA=mRNA /PROD=DNA-binding zinc finger(GBF) /DB_XREF=gi:3582142 /UG=Hs.285313 core promoter element binding protein /FL=gb:BC000311.1 gb:BC004301.1 gb:AF001461.1 gb:AB017493.1 gb:NM_001300.2 AB017493 Kruppel-like factor 6 KLF6 1316 NM_001008490 /// NM_001160124 /// NM_001160125 /// NM_001300 /// NR_027653 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0016049 // cell growth // non-traceable author statement /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030183 // B cell differentiation // non-traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // traceable author statement 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -22.35 338.10 -0.53 0.61 0.68 -4.61
201405_s_at 201405_s_at NM_006833 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006833.1 /DEF=Homo sapiens COP9 subunit 6 (MOV34 homolog, 34 kD) (MOV34-34KD), mRNA. /FEA=mRNA /GEN=MOV34-34KD /PROD=COP9 subunit 6 (MOV34 homolog, 34 kD) /DB_XREF=gi:5803095 /UG=Hs.15591 COP9 subunit 6 (MOV34 homolog, 34 kD) /FL=gb:BC002520.1 gb:U70735.1 gb:NM_006833.1 NM_006833 COP9 signalosome subunit 6 COPS6 10980 NM_006833 0010388 // cullin deneddylation // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // COP9 signalosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 22.55 427.62 0.53 0.61 0.68 -4.61
208700_s_at 208700_s_at L12711 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L12711.1 /DEF=Homo sapiens transketolase (tk) mRNA, complete cds. /FEA=mRNA /GEN=tk /PROD=transketolase /DB_XREF=gi:388890 /UG=Hs.89643 transketolase (Wernicke-Korsakoff syndrome) /FL=gb:U55017.1 gb:L12711.1 gb:NM_001064.1 L12711 transketolase TKT 7086 NM_001064 /// NM_001135055 /// NM_001135056 /// NM_001258028 /// NR_047579 /// NR_047580 /// XM_006713319 0005975 // carbohydrate metabolic process // traceable author statement /// 0005999 // xylulose biosynthetic process // traceable author statement /// 0006098 // pentose-phosphate shunt // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009052 // pentose-phosphate shunt, non-oxidative branch // non-traceable author statement /// 0040008 // regulation of growth // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046166 // glyceraldehyde-3-phosphate biosynthetic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004802 // transketolase activity // not recorded /// 0004802 // transketolase activity // inferred from direct assay /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from direct assay -63.83 824.26 -0.53 0.61 0.68 -4.61
201340_s_at 201340_s_at AF010314 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF010314.1 /DEF=Homo sapiens Pig10 (PIG10) mRNA, complete cds. /FEA=mRNA /GEN=PIG10 /PROD=Pig10 /DB_XREF=gi:2415303 /UG=Hs.104925 ectodermal-neural cortex (with BTB-like domain) /FL=gb:BC000418.1 gb:AF010314.1 gb:AF059611.1 gb:AF005381.1 gb:NM_003633.1 AF010314 ectodermal-neural cortex 1 (with BTB domain) ENC1 8507 NM_001256574 /// NM_001256575 /// NM_001256576 /// NM_003633 /// NR_046318 0007275 // multicellular organismal development // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0010499 // proteasomal ubiquitin-independent protein catabolic process // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay /// 0017148 // negative regulation of translation // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -11.63 111.96 -0.53 0.61 0.68 -4.61
200964_at 200964_at NM_003334 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003334.1 /DEF=Homo sapiens ubiquitin-activating enzyme E1 (A1S9T and BN75 temperature sensitivity complementing) (UBE1), mRNA. /FEA=mRNA /GEN=UBE1 /PROD=ubiquitin-activating enzyme E1 (A1S9T and BN75temperature sensitivity complementing) /DB_XREF=gi:4507762 /UG=Hs.2055 ubiquitin-activating enzyme E1 (A1S9T and BN75 temperature sensitivity complementing) /FL=gb:M58028.1 gb:NM_003334.1 NM_003334 ubiquitin-like modifier activating enzyme 1 UBA1 7317 NM_003334 /// NM_153280 /// XM_005272648 /// XM_005272649 /// XM_005272650 0006464 // cellular protein modification process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019941 // modification-dependent protein catabolic process // not recorded 0000792 // heterochromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0010008 // endosome membrane // inferred from direct assay /// 0030057 // desmosome // inferred from direct assay /// 0030867 // rough endoplasmic reticulum membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004839 // ubiquitin activating enzyme activity // not recorded /// 0004842 // ubiquitin-protein transferase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 30.20 1029.53 0.53 0.61 0.69 -4.61
209581_at 209581_at BC001387 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001387.1 /DEF=Homo sapiens, similar to rat HREV107, clone MGC:1240, mRNA, complete cds. /FEA=mRNA /PROD=similar to rat HREV107 /DB_XREF=gi:12655072 /UG=Hs.37189 similar to rat HREV107 /FL=gb:BC001387.1 gb:NM_007069.1 gb:AB030814.1 BC001387 phospholipase A2, group XVI PLA2G16 11145 NM_001128203 /// NM_007069 /// XM_006718426 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from direct assay /// 0006644 // phospholipid metabolic process // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0036149 // phosphatidylinositol acyl-chain remodeling // traceable author statement /// 0036150 // phosphatidylserine acyl-chain remodeling // traceable author statement /// 0036151 // phosphatidylcholine acyl-chain remodeling // traceable author statement /// 0036152 // phosphatidylethanolamine acyl-chain remodeling // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0046474 // glycerophospholipid biosynthetic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004623 // phospholipase A2 activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008970 // phosphatidylcholine 1-acylhydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0052739 // phosphatidylserine 1-acylhydrolase activity // inferred from electronic annotation /// 0052740 // 1-acyl-2-lysophosphatidylserine acylhydrolase activity // inferred from electronic annotation -7.13 77.01 -0.52 0.62 0.69 -4.61
200655_s_at 200655_s_at NM_006888 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006888.1 /DEF=Homo sapiens calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA. /FEA=mRNA /GEN=CALM1 /PROD=calmodulin 1 (phosphorylase kinase, delta) /DB_XREF=gi:5901911 /UG=Hs.177656 calmodulin 1 (phosphorylase kinase, delta) /FL=gb:M27319.1 gb:NM_006888.1 NM_006888 calmodulin 1 (phosphorylase kinase, delta) /// calmodulin 2 (phosphorylase kinase, delta) /// calmodulin 3 (phosphorylase kinase, delta) CALM1 /// CALM2 /// CALM3 801 /// 805 /// 808 NM_001166106 /// NM_001743 /// NM_005184 /// NM_006888 /// XM_006720258 0001975 // response to amphetamine // inferred from electronic annotation /// 0002027 // regulation of heart rate // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0005513 // detection of calcium ion // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030801 // positive regulation of cyclic nucleotide metabolic process // inferred from direct assay /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from electronic annotation /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred by curator 0000922 // spindle pole // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0030017 // sarcomere // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0031432 // titin binding // inferred from physical interaction /// 0031800 // type 3 metabotropic glutamate receptor binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0031997 // N-terminal myristoylation domain binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0072542 // protein phosphatase activator activity // inferred from direct assay -46.10 1218.00 -0.52 0.62 0.69 -4.61
208937_s_at 208937_s_at D13889 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D13889.1 /DEF=Human mRNA for Id-1H, complete cds. /FEA=mRNA /GEN=Id-1H /PROD=Id-1H /DB_XREF=gi:464181 /UG=Hs.75424 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein /FL=gb:BC000613.1 gb:NM_002165.1 gb:D13889.1 D13889 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein ID1 3397 NM_002165 /// NM_181353 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001525 // angiogenesis // traceable author statement /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0010621 // negative regulation of transcription by transcription factor localization // traceable author statement /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0031648 // protein destabilization // inferred from electronic annotation /// 0032963 // collagen metabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043408 // regulation of MAPK cascade // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043534 // blood vessel endothelial cell migration // traceable author statement /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // traceable author statement /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060426 // lung vasculature development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation -16.28 205.26 -0.52 0.62 0.69 -4.61
218228_s_at 218228_s_at NM_025235 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025235.1 /DEF=Homo sapiens tankyrase 2 (TNKL), mRNA. /FEA=mRNA /GEN=TNKL /PROD=tankyrase 2 /DB_XREF=gi:13376841 /UG=Hs.280776 tankyrase 2 /FL=gb:AF264912.1 gb:AF329696.1 gb:NM_025235.1 gb:AF342982.1 NM_025235 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 TNKS2 80351 NM_025235 /// XM_005270185 0000209 // protein polyubiquitination // inferred from direct assay /// 0006471 // protein ADP-ribosylation // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0032212 // positive regulation of telomere maintenance via telomerase // inferred by curator /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0070198 // protein localization to chromosome, telomeric region // inferred from mutant phenotype /// 0070213 // protein auto-ADP-ribosylation // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0000242 // pericentriolar material // inferred from direct assay /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -12.18 160.54 -0.52 0.62 0.69 -4.61
216524_x_at 216524_x_at AL049260 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049260.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564E233 (from clone DKFZp564E233). /FEA=mRNA /DB_XREF=gi:4500007 /UG=Hs.302050 Homo sapiens mRNA; cDNA DKFZp564E233 (from clone DKFZp564E233) AL049260 13.70 98.35 0.52 0.62 0.69 -4.61
37005_at 37005_at D28124 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. D28124:Human mRNA for unknown product, complete cds /cds=(61,603) /gb=D28124 /gi=641821 /ug=Hs.76307 /len=1929 D28124 MINOS1-NBL1 readthrough /// neuroblastoma 1, DAN family BMP antagonist MINOS1-NBL1 /// NBL1 4681 /// 100532736 NM_001204084 /// NM_001204085 /// NM_001204086 /// NM_001204088 /// NM_001204089 /// NM_001278164 /// NM_001278165 /// NM_001278166 /// NM_005380 /// NM_182744 0007399 // nervous system development // inferred from sequence or structural similarity /// 0030514 // negative regulation of BMP signaling pathway // inferred from direct assay /// 0035582 // sequestering of BMP in extracellular matrix // inferred from sequence or structural similarity /// 0038098 // sequestering of BMP from receptor via BMP binding // inferred from direct assay /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0048263 // determination of dorsal identity // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0090027 // negative regulation of monocyte chemotaxis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred by curator /// 0005739 // mitochondrion // /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016015 // morphogen activity // inferred from sequence or structural similarity /// 0036122 // BMP binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from mutant phenotype -10.00 221.22 -0.52 0.62 0.69 -4.61
202515_at 202515_at BG251175 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG251175 /FEA=EST /DB_XREF=gi:12760991 /DB_XREF=est:602364982F1 /CLONE=IMAGE:4473165 /UG=Hs.154294 discs, large (Drosophila) homolog 1 /FL=gb:NM_004087.1 gb:U13896.1 BG251175 discs, large homolog 1 (Drosophila) DLG1 1739 NM_001098424 /// NM_001204386 /// NM_001204387 /// NM_001204388 /// NM_001290983 /// NM_004087 /// XM_005269289 /// XM_005269290 /// XM_005269291 /// XM_005269292 /// XM_005269297 /// XM_005269298 /// XM_005269299 /// XM_005269301 /// XM_006713520 /// XM_006713521 /// XR_246039 0001657 // ureteric bud development // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001771 // immunological synapse formation // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // inferred from direct assay /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002369 // T cell cytokine production // inferred from electronic annotation /// 0007015 // actin filament organization // inferred from direct assay /// 0007093 // mitotic cell cycle checkpoint // non-traceable author statement /// 0007163 // establishment or maintenance of cell polarity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement /// 0016337 // single organismal cell-cell adhesion // inferred from direct assay /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030432 // peristalsis // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // inferred from direct assay /// 0031579 // membrane raft organization // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // inferred from electronic annotation /// 0042110 // T cell activation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0042982 // amyloid precursor protein metabolic process // inferred from electronic annotation /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 0045930 // negative regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046939 // nucleotide phosphorylation // traceable author statement /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048729 // tissue morphogenesis // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0060022 // hard palate development // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from direct assay /// 0072659 // protein localization to plasma membrane // inferred from mutant phenotype /// 0072659 // protein localization to plasma membrane // traceable author statement /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from direct assay /// 1902305 // regulation of sodium ion transmembrane transport // traceable author statement 0001772 // immunological synapse // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0009898 // cytoplasmic side of plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014704 // intercalated disc // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0031253 // cell projection membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0033268 // node of Ranvier // inferred from electronic annotation /// 0035748 // myelin sheath abaxonal region // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043219 // lateral loop // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097025 // MPP7-DLG1-LIN7 complex // inferred from direct assay 0004385 // guanylate kinase activity // traceable author statement /// 0004721 // phosphoprotein phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // traceable author statement /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0015459 // potassium channel regulator activity // non-traceable author statement /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019902 // phosphatase binding // inferred from physical interaction /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0097016 // L27 domain binding // inferred from physical interaction 8.70 227.97 0.52 0.62 0.69 -4.61
208895_s_at 208895_s_at BG530850 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG530850 /FEA=EST /DB_XREF=gi:13522387 /DB_XREF=est:602559887F1 /CLONE=IMAGE:4698044 /UG=Hs.100555 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 18 (Myc-regulated) /FL=gb:BC001238.1 gb:BC003360.1 BG530850 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 DDX18 8886 NM_006773 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -12.82 163.71 -0.52 0.62 0.69 -4.61
209070_s_at 209070_s_at AI183997 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI183997 /FEA=EST /DB_XREF=gi:3734635 /DB_XREF=est:qd69h09.x1 /CLONE=IMAGE:1734785 /UG=Hs.24950 regulator of G-protein signalling 5 /FL=gb:AB008109.1 gb:NM_003617.1 gb:AF159570.1 AI183997 regulator of G-protein signaling 5 RGS5 8490 NM_001195303 /// NM_001254748 /// NM_001254749 /// NM_003617 /// NM_025226 /// NR_045630 0007165 // signal transduction // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // not recorded /// 0043547 // positive regulation of GTPase activity // traceable author statement /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // not recorded -65.98 1214.34 -0.52 0.62 0.69 -4.61
210178_x_at 210178_x_at AF047448 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF047448.1 /DEF=Homo sapiens TLS-associated protein TASR mRNA, complete cds. /FEA=mRNA /PROD=TLS-associated protein TASR /DB_XREF=gi:2961148 /UG=Hs.288038 TLS-associated serine-arginine protein 1 /FL=gb:BC001107.1 gb:AF047448.1 AF047448 serine/arginine-rich splicing factor 10 SRSF10 10772 NM_001191005 /// NM_001191006 /// NM_001191007 /// NM_001191009 /// NM_006625 /// NM_054016 /// NR_034035 /// XM_006710298 /// XM_006710299 /// XM_006710300 /// XM_006710301 0000244 // spliceosomal tri-snRNP complex assembly // non-traceable author statement /// 0000375 // RNA splicing, via transesterification reactions // inferred from direct assay /// 0000398 // mRNA splicing, via spliceosome // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006376 // mRNA splice site selection // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // non-traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016482 // cytoplasmic transport // inferred from direct assay /// 0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from direct assay 0005634 // nucleus // inferred by curator /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050733 // RS domain binding // non-traceable author statement /// 0051082 // unfolded protein binding // non-traceable author statement -14.62 193.89 -0.52 0.62 0.69 -4.61
203590_at 203590_at NM_006141 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006141.1 /DEF=Homo sapiens dynein, cytoplasmic, light intermediate polypeptide 2 (DNCLI2), mRNA. /FEA=mRNA /GEN=DNCLI2 /PROD=dynein, cytoplasmic, light intermediatepolypeptide 2 /DB_XREF=gi:5453633 /UG=Hs.194625 dynein, cytoplasmic, light intermediate polypeptide 2 /FL=gb:AF035812.1 gb:NM_006141.1 NM_006141 dynein, cytoplasmic 1, light intermediate chain 2 DYNC1LI2 1783 NM_001286157 /// NM_006141 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0051642 // centrosome localization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030286 // dynein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation -16.53 240.41 -0.52 0.62 0.69 -4.61
200790_at 200790_at NM_002539 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002539.1 /DEF=Homo sapiens ornithine decarboxylase 1 (ODC1) mRNA. /FEA=mRNA /GEN=ODC1 /PROD=ornithine decarboxylase 1 /DB_XREF=gi:4505488 /UG=Hs.75212 ornithine decarboxylase 1 /FL=gb:M16650.1 gb:NM_002539.1 NM_002539 ornithine decarboxylase 1 ODC1 4953 NM_001287188 /// NM_001287189 /// NM_001287190 /// NM_002539 0001822 // kidney development // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006595 // polyamine metabolic process // traceable author statement /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0006596 // polyamine biosynthetic process // non-traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009446 // putrescine biosynthetic process // inferred from electronic annotation /// 0009615 // response to virus // inferred from expression pattern /// 0033387 // putrescine biosynthetic process from ornithine // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042176 // regulation of protein catabolic process // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004586 // ornithine decarboxylase activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 26.40 937.52 0.52 0.62 0.69 -4.61
208478_s_at 208478_s_at NM_004324 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004324.1 /DEF=Homo sapiens BCL2-associated X protein (BAX), mRNA. /FEA=CDS /GEN=BAX /PROD=BCL2-associated X protein /DB_XREF=gi:4757837 /UG=Hs.159428 BCL2-associated X protein /FL=gb:L22474.1 gb:NM_004324.1 NM_004324 BCL2-associated X protein BAX 581 NM_001291428 /// NM_001291429 /// NM_001291430 /// NM_001291431 /// NM_004324 /// NM_138761 /// NM_138762 /// NM_138763 /// NM_138764 /// NR_027882 /// XM_006723313 /// XM_006723314 0001101 // response to acid // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001776 // leukocyte homeostasis // inferred from electronic annotation /// 0001777 // T cell homeostatic proliferation // inferred from electronic annotation /// 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001783 // B cell apoptotic process // inferred from direct assay /// 0001822 // kidney development // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from direct assay /// 0001844 // protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002262 // myeloid cell homeostasis // inferred from electronic annotation /// 0002352 // B cell negative selection // inferred from electronic annotation /// 0002358 // B cell homeostatic proliferation // inferred from electronic annotation /// 0002904 // positive regulation of B cell apoptotic process // inferred from electronic annotation /// 0006309 // apoptotic DNA fragmentation // inferred from mutant phenotype /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006808 // regulation of nitrogen utilization // inferred from electronic annotation /// 0006915 // apoptotic process // non-traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0006927 // transformed cell apoptotic process // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic annotation /// 0008053 // mitochondrial fusion // inferred from direct assay /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred by curator /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0008635 // activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c // inferred from direct assay /// 0008637 // apoptotic mitochondrial changes // inferred from direct assay /// 0009566 // fertilization // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from direct assay /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0010248 // establishment or maintenance of transmembrane electrochemical gradient // inferred from direct assay /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021854 // hypothalamus development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030264 // nuclear fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0032469 // endoplasmic reticulum calcium ion homeostasis // traceable author statement /// 0032471 // negative regulation of endoplasmic reticulum calcium ion concentration // inferred from electronic annotation /// 0032976 // release of matrix enzymes from mitochondria // inferred from direct assay /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033599 // regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0034644 // cellular response to UV // inferred from electronic annotation /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035234 // ectopic germ cell programmed cell death // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043496 // regulation of protein homodimerization activity // inferred from direct assay /// 0043497 // regulation of protein heterodimerization activity // inferred from physical interaction /// 0043523 // regulation of neuron apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from direct assay /// 0043653 // mitochondrial fragmentation involved in apoptotic process // inferred from direct assay /// 0045136 // development of secondary sexual characteristics // inferred from electronic annotation /// 0046666 // retinal cell programmed cell death // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0048087 // positive regulation of developmental pigmentation // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048515 // spermatid differentiation // inferred from electronic annotation /// 0048597 // post-embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048872 // homeostasis of number of cells // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from direct assay /// 0060011 // Sertoli cell proliferation // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060058 // positive regulation of apoptotic process involved in mammary gland involution // inferred from electronic annotation /// 0060068 // vagina development // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0070242 // thymocyte apoptotic process // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from electronic annotation /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097190 // apoptotic signaling pathway // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // not recorded /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 0097296 // activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway // inferred from electronic annotation /// 1900103 // positive regulation of endoplasmic reticulum unfolded protein response // inferred from mutant phenotype /// 1901030 // positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway // traceable author statement /// 1902108 // regulation of mitochondrial membrane permeability involved in apoptotic process // inferred from electronic annotation /// 1902110 // positive regulation of mitochondrial membrane permeability involved in apoptotic process // inferred from electronic annotation /// 1902262 // apoptotic process involved in patterning of blood vessels // inferred from electronic annotation /// 1902263 // apoptotic process involved in embryonic digit morphogenesis // inferred from electronic annotation /// 1902512 // positive regulation of apoptotic DNA fragmentation // inferred from mutant phenotype /// 1990009 // retinal cell apoptotic process // inferred from mutant phenotype /// 1990117 // B cell receptor apoptotic signaling pathway // inferred from direct assay /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005757 // mitochondrial permeability transition pore complex // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0046930 // pore complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097136 // Bcl-2 family protein complex // inferred from direct assay /// 0097144 // BAX complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from direct assay /// 0015267 // channel activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051434 // BH3 domain binding // inferred from direct assay /// 0051434 // BH3 domain binding // inferred from physical interaction 18.27 110.99 0.51 0.62 0.69 -4.61
215293_s_at 215293_s_at AL049261 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL049261.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564E053 (from clone DKFZp564E053). /FEA=mRNA /DB_XREF=gi:4500009 /UG=Hs.133968 FGF receptor activating protein 1 AL049261 post-GPI attachment to proteins 2 PGAP2 27315 NM_001145438 /// NM_001256235 /// NM_001256236 /// NM_001256237 /// NM_001256238 /// NM_001256239 /// NM_001256240 /// NM_001283038 /// NM_001283039 /// NM_001283040 /// NM_014489 /// NR_027016 /// NR_027017 /// NR_027018 /// NR_045923 /// NR_045925 /// NR_045926 /// NR_045927 /// NR_045929 /// NR_104270 /// NR_104271 /// NR_104272 /// XM_006718181 /// XM_006718182 /// XM_006718183 /// XM_006718184 /// XM_006718185 /// XM_006718186 /// XM_006718187 /// XM_006718188 /// XM_006718189 /// XM_006718190 /// XM_006718191 /// XM_006718192 /// XM_006718193 0006506 // GPI anchor biosynthetic process // inferred from sequence or structural similarity /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042770 // signal transduction in response to DNA damage // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 1902230 // negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage // inferred from electronic annotation 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from sequence or structural similarity -7.67 97.29 -0.51 0.62 0.69 -4.61
210046_s_at 210046_s_at U52144 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U52144.1 /DEF=Human isocitrate dehydrogenase mRNA, complete cds. /FEA=mRNA /PROD=isocitrate dehydrogenase /DB_XREF=gi:1277202 /UG=Hs.5337 isocitrate dehydrogenase 2 (NADP+), mitochondrial /FL=gb:U52144.1 U52144 isocitrate dehydrogenase 2 (NADP+), mitochondrial IDH2 3418 NM_001289910 /// NM_001290114 /// NM_002168 0005975 // carbohydrate metabolic process // non-traceable author statement /// 0006097 // glyoxylate cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006102 // isocitrate metabolic process // inferred from sequence or structural similarity /// 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0008152 // metabolic process // non-traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0004450 // isocitrate dehydrogenase (NADP+) activity // not recorded /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation -17.05 313.10 -0.51 0.62 0.69 -4.61
216153_x_at 216153_x_at AK022897 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK022897.1 /DEF=Homo sapiens cDNA FLJ12835 fis, clone NT2RP2003165. /FEA=mRNA /DB_XREF=gi:10434555 /UG=Hs.306641 Homo sapiens cDNA FLJ12835 fis, clone NT2RP2003165 AK022897 reversion-inducing-cysteine-rich protein with kazal motifs RECK 8434 NM_021111 /// XM_006716879 0001955 // blood vessel maturation // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008191 // metalloendopeptidase inhibitor activity // traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 13.73 117.96 0.51 0.62 0.69 -4.61
219855_at 219855_at NM_018159 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018159.1 /DEF=Homo sapiens hypothetical protein FLJ10628 (FLJ10628), mRNA. /FEA=mRNA /GEN=FLJ10628 /PROD=hypothetical protein FLJ10628 /DB_XREF=gi:8922558 /UG=Hs.200016 hypothetical protein FLJ10628 /FL=gb:NM_018159.1 NM_018159 nudix (nucleoside diphosphate linked moiety X)-type motif 11 NUDT11 55190 NM_018159 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation 15.50 127.70 0.51 0.63 0.69 -4.61
218085_at 218085_at NM_015961 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015961.1 /DEF=Homo sapiens CGI-34 protein (LOC51612), mRNA. /FEA=mRNA /GEN=LOC51612 /PROD=CGI-34 protein /DB_XREF=gi:7706273 /UG=Hs.36237 CGI-34 protein /FL=gb:AF275810.1 gb:AF132968.1 gb:NM_015961.1 NM_015961 charged multivesicular body protein 5 CHMP5 51510 NM_001195536 /// NM_016410 0001919 // regulation of receptor recycling // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 10.50 152.60 0.51 0.63 0.69 -4.61
200807_s_at 200807_s_at NM_002156 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002156.1 /DEF=Homo sapiens heat shock 60kD protein 1 (chaperonin) (HSPD1), mRNA. /FEA=mRNA /GEN=HSPD1 /PROD=heat shock 60kD protein 1 (chaperonin) /DB_XREF=gi:4504520 /UG=Hs.79037 heat shock 60kD protein 1 (chaperonin) /FL=gb:BC002676.1 gb:BC003030.1 gb:M34664.1 gb:M22382.1 gb:NM_002156.1 NM_002156 heat shock 60kDa protein 1 (chaperonin) HSPD1 3329 NM_002156 /// NM_199440 /// XM_005246518 0002368 // B cell cytokine production // inferred from direct assay /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // inferred from direct assay /// 0002842 // positive regulation of T cell mediated immune response to tumor cell // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006457 // protein folding // inferred from electronic annotation /// 0006458 // 'de novo' protein folding // inferred from sequence or structural similarity /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay /// 0008219 // cell death // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032727 // positive regulation of interferon-alpha production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from sequence or structural similarity /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0042026 // protein refolding // inferred from direct assay /// 0042100 // B cell proliferation // inferred from direct assay /// 0042110 // T cell activation // inferred from direct assay /// 0042113 // B cell activation // inferred from direct assay /// 0043032 // positive regulation of macrophage activation // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0048291 // isotype switching to IgG isotypes // inferred from direct assay /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050870 // positive regulation of T cell activation // inferred from direct assay /// 0050870 // positive regulation of T cell activation // inferred from sequence or structural similarity /// 0051131 // chaperone-mediated protein complex assembly // inferred from sequence or structural similarity /// 0051604 // protein maturation // inferred from sequence or structural similarity 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // traceable author statement /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // inferred from direct assay /// 0030135 // coated vesicle // inferred from direct assay /// 0030141 // secretory granule // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0046696 // lipopolysaccharide receptor complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // inferred from direct assay /// 0002039 // p53 binding // inferred from physical interaction /// 0003688 // DNA replication origin binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred by curator /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity /// 0051087 // chaperone binding // inferred from physical interaction 20.28 1712.84 0.51 0.63 0.69 -4.61
221641_s_at 221641_s_at AF241787 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF241787.1 /DEF=Homo sapiens CGI16-iso mRNA, complete cds. /FEA=mRNA /PROD=CGI16-iso /DB_XREF=gi:12005490 /UG=Hs.18625 Mitochondrial Acyl-CoA Thioesterase /FL=gb:AF241787.1 AF241787 acyl-CoA thioesterase 9 ACOT9 23597 NM_001033583 /// NM_001037171 /// XM_005274470 /// XM_005274471 /// XM_005274472 0006637 // acyl-CoA metabolic process // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from sequence or structural similarity 0003986 // acetyl-CoA hydrolase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation -42.12 381.81 -0.51 0.63 0.69 -4.61
205988_at 205988_at NM_003874 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003874.1 /DEF=Homo sapiens CD84 antigen (leukocyte antigen) (CD84), mRNA. /FEA=mRNA /GEN=CD84 /PROD=CD84 antigen (leukocyte antigen) /DB_XREF=gi:4502686 /UG=Hs.137548 CD84 antigen (leukocyte antigen) /FL=gb:U82988.1 gb:NM_003874.1 gb:AF054815.1 NM_003874 CD84 molecule CD84 8832 NM_001184879 /// NM_001184881 /// NM_001184882 /// NM_003874 /// XR_241101 0006952 // defense response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0050900 // leukocyte migration // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -7.80 65.72 -0.51 0.63 0.70 -4.61
210519_s_at 210519_s_at BC000906 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000906.1 /DEF=Homo sapiens, clone MGC:5333, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:5333) /DB_XREF=gi:12654176 /UG=Hs.80706 diaphorase (NADHNADPH) (cytochrome b-5 reductase) /FL=gb:BC000906.1 BC000906 NAD(P)H dehydrogenase, quinone 1 NQO1 1728 NM_000903 /// NM_001025433 /// NM_001025434 /// NM_001286137 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006809 // nitric oxide biosynthetic process // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0009636 // response to toxic substance // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003955 // NAD(P)H dehydrogenase (quinone) activity // inferred from electronic annotation /// 0004128 // cytochrome-b5 reductase activity, acting on NAD(P)H // traceable author statement /// 0004784 // superoxide dismutase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -40.47 800.21 -0.51 0.63 0.70 -4.61
219544_at 219544_at NM_024808 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024808.1 /DEF=Homo sapiens hypothetical protein FLJ22624 (FLJ22624), mRNA. /FEA=mRNA /GEN=FLJ22624 /PROD=hypothetical protein FLJ22624 /DB_XREF=gi:13376190 /UG=Hs.166425 hypothetical protein FLJ22624 /FL=gb:NM_024808.1 NM_024808 bora, aurora kinase A activator BORA 79866 NM_001286746 /// NM_001286747 /// NM_024808 /// XM_006719868 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0060236 // regulation of mitotic spindle organization // inferred from mutant phenotype 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction 7.25 80.30 0.51 0.63 0.70 -4.61
201292_at 201292_at AL561834 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL561834 /FEA=EST /DB_XREF=gi:12909658 /DB_XREF=est:AL561834 /CLONE=CS0DB005YC15 (3 prime) /UG=Hs.156346 topoisomerase (DNA) II alpha (170kD) /FL=gb:J04088.1 gb:NM_001067.1 AL561834 topoisomerase (DNA) II alpha 170kDa TOP2A 7153 NM_001067 /// XM_005257632 0000278 // mitotic cell cycle // traceable author statement /// 0000712 // resolution of meiotic recombination intermediates // not recorded /// 0000819 // sister chromatid segregation // not recorded /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // non-traceable author statement /// 0006261 // DNA-dependent DNA replication // /// 0006265 // DNA topological change // inferred from direct assay /// 0006266 // DNA ligation // inferred from direct assay /// 0006268 // DNA unwinding involved in DNA replication // not recorded /// 0006281 // DNA repair // non-traceable author statement /// 0006312 // mitotic recombination // not recorded /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0030263 // apoptotic chromosome condensation // inferred from direct assay /// 0040016 // embryonic cleavage // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0044774 // mitotic DNA integrity checkpoint // not recorded /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0045870 // positive regulation of single stranded viral RNA replication via double stranded DNA intermediate // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement 0000228 // nuclear chromosome // inferred from direct assay /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000795 // synaptonemal complex // /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from direct assay /// 0009295 // nucleoid // not recorded /// 0009330 // DNA topoisomerase complex (ATP-hydrolyzing) // inferred from direct assay /// 0019035 // viral integration complex // non-traceable author statement /// 0043234 // protein complex // inferred from physical interaction 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from direct assay /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase type II (ATP-hydrolyzing) activity // inferred from direct assay /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008301 // DNA binding, bending // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from mutant phenotype /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 15.18 210.09 0.51 0.63 0.70 -4.61
211047_x_at 211047_x_at BC006337 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006337.1 /DEF=Homo sapiens, clone MGC:12798, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:12798) /DB_XREF=gi:13623468 /FL=gb:BC006337.1 BC006337 adaptor-related protein complex 2, sigma 1 subunit AP2S1 1175 NM_004069 /// NM_021575 /// XM_005258499 /// XM_005258500 /// XM_006723004 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0030100 // regulation of endocytosis // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048268 // clathrin coat assembly // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // traceable author statement /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement 0005215 // transporter activity // non-traceable author statement /// 0008565 // protein transporter activity // non-traceable author statement 41.53 1251.56 0.51 0.63 0.70 -4.61
208672_s_at 208672_s_at BC000914 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000914.1 /DEF=Homo sapiens, splicing factor, arginineserine-rich 3, clone MGC:5205, mRNA, complete cds. /FEA=mRNA /PROD=splicing factor, arginineserine-rich 3 /DB_XREF=gi:12654192 /UG=Hs.167460 splicing factor, arginineserine-rich 3 /FL=gb:BC000914.1 gb:AF107405.1 BC000914 serine/arginine-rich splicing factor 3 SRSF3 6428 NM_003017 /// NR_036610 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006369 // termination of RNA polymerase II transcription // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0031124 // mRNA 3'-end processing // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 17.27 924.96 0.51 0.63 0.70 -4.61
204185_x_at 204185_x_at NM_005038 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005038.1 /DEF=Homo sapiens peptidylprolyl isomerase D (cyclophilin D) (PPID), mRNA. /FEA=mRNA /GEN=PPID /PROD=peptidylprolyl isomerase D (cyclophilin D) /DB_XREF=gi:4826931 /UG=Hs.143482 peptidylprolyl isomerase D (cyclophilin D) /FL=gb:L11667.1 gb:NM_005038.1 NM_005038 peptidylprolyl isomerase D PPID 5481 NM_005038 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // inferred from sequence or structural similarity /// 0006461 // protein complex assembly // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0019076 // viral release from host cell // traceable author statement /// 0034389 // lipid particle organization // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0045070 // positive regulation of viral genome replication // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0061077 // chaperone-mediated protein folding // inferred from direct assay /// 0071492 // cellular response to UV-A // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0016018 // cyclosporin A binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from sequence or structural similarity /// 0030544 // Hsp70 protein binding // inferred from sequence or structural similarity /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from direct assay 8.48 233.69 0.50 0.63 0.70 -4.61
212004_at 212004_at AL050028 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050028.1 /DEF=Homo sapiens mRNA; cDNA DKFZp566C0424 (from clone DKFZp566C0424); partial cds. /FEA=mRNA /GEN=DKFZp566C0424 /PROD=hypothetical protein /DB_XREF=gi:4884267 /UG=Hs.226770 DKFZP566C0424 protein AL050028 SUZ RNA binding domain containing 1 SZRD1 26099 NM_001114600 /// NM_001271869 /// NR_073500 /// NR_073501 /// NR_073502 /// NR_073503 -13.08 232.21 -0.50 0.63 0.70 -4.61
209537_at 209537_at AF000416 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF000416.1 /DEF=Homo sapiens EXT-like protein 2 (EXTL2) mRNA, complete cds. /FEA=mRNA /GEN=EXTL2 /PROD=EXT-like protein 2 /DB_XREF=gi:2895061 /UG=Hs.61152 exostoses (multiple)-like 2 /FL=gb:AB009284.1 gb:AF000416.1 AF000416 exostosin-like glycosyltransferase 2 EXTL2 2135 NM_001033025 /// NM_001261440 /// NM_001261441 /// NM_001261442 /// NM_001439 /// NR_048570 /// XM_005270621 /// XM_005270622 0006044 // N-acetylglucosamine metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0019276 // UDP-N-acetylgalactosamine metabolic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031227 // intrinsic component of endoplasmic reticulum membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001888 // glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0035248 // alpha-1,4-N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -13.13 278.66 -0.50 0.63 0.70 -4.61
202246_s_at 202246_s_at NM_000075 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000075.1 /DEF=Homo sapiens cyclin-dependent kinase 4 (CDK4), mRNA. /FEA=mRNA /GEN=CDK4 /PROD=cyclin-dependent kinase 4 /DB_XREF=gi:4502734 /UG=Hs.95577 cyclin-dependent kinase 4 /FL=gb:BC003644.1 gb:U79269.1 gb:NM_000075.1 gb:M14505.1 NM_000075 cyclin-dependent kinase 4 CDK4 1019 NM_000075 /// NM_052984 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010288 // response to lead ion // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from mutant phenotype /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from genetic interaction /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0071157 // negative regulation of cell cycle arrest // inferred from direct assay 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from direct assay /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation -16.87 505.71 -0.50 0.63 0.70 -4.61
208634_s_at 208634_s_at AB029290 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB029290.1 /DEF=Homo sapiens mRNA for actin binding protein ABP620, complete cds. /FEA=mRNA /GEN=abp620 /PROD=actin binding protein ABP620 /DB_XREF=gi:5821433 /UG=Hs.108258 actin binding protein; macrophin (microfilament and actin filament cross-linker protein) /FL=gb:AB029290.1 AB029290 microtubule-actin crosslinking factor 1 MACF1 23499 NM_012090 /// NM_033044 /// XM_005270694 /// XM_005270695 /// XM_005270696 /// XM_005270697 /// XM_005270698 /// XM_005270700 /// XM_006710519 /// XM_006710520 /// XM_006710521 /// XM_006710522 /// XM_006710523 /// XM_006710524 /// XM_006710525 /// XM_006710526 /// XM_006710527 /// XM_006710528 /// XM_006710529 /// XM_006710530 /// XM_006710531 /// XM_006710532 /// XM_006710533 /// XM_006710534 /// XM_006710535 /// XM_006710536 /// XM_006710537 /// XM_006710538 /// XM_006710539 /// XM_006710540 0001707 // mesoderm formation // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006620 // posttranslational protein targeting to membrane // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0010632 // regulation of epithelial cell migration // inferred from sequence or structural similarity /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0043001 // Golgi to plasma membrane protein transport // inferred from direct assay /// 0051893 // regulation of focal adhesion assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // non-traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // non-traceable author statement 44.45 731.88 0.50 0.63 0.70 -4.61
41160_at 41160_at AC005943 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AC005943:Homo sapiens chromosome 19, cosmid R30538 /cds=(22,897) /gb=AC005943 /gi=3850563 /ug=Hs.178728 /len=2559 AC005943 methyl-CpG binding domain protein 3 MBD3 53615 NM_001281453 /// NM_001281454 /// NM_003926 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0009888 // tissue development // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016581 // NuRD complex // non-traceable author statement /// 0043234 // protein complex // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008327 // methyl-CpG binding // inferred from direct assay /// 0031492 // nucleosomal DNA binding // inferred from direct assay 15.10 213.10 0.50 0.63 0.70 -4.61
200786_at 200786_at NM_002799 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002799.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, beta type, 7 (PSMB7), mRNA. /FEA=mRNA /GEN=PSMB7 /PROD=proteasome (prosome, macropain) subunit, betatype, 7 /DB_XREF=gi:4506202 /UG=Hs.118065 proteasome (prosome, macropain) subunit, beta type, 7 /FL=gb:BC000509.1 gb:D38048.1 gb:NM_002799.1 NM_002799 proteasome (prosome, macropain) subunit, beta type, 7 PSMB7 5695 NM_002799 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 25.92 666.56 0.49 0.64 0.70 -4.61
209678_s_at 209678_s_at L18964 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L18964.1 /DEF=Human protein kinase C iota isoform (PRKCI) mRNA, complete cds. /FEA=mRNA /GEN=PRKCI /PROD=protein kinase C iota /DB_XREF=gi:432273 /UG=Hs.1904 protein kinase C, iota /FL=gb:L18964.1 gb:NM_002740.1 gb:L33881.1 L18964 protein kinase C, iota PRKCI 5584 NM_002740 0006468 // protein phosphorylation // inferred from direct assay /// 0006612 // protein targeting to membrane // non-traceable author statement /// 0007010 // cytoskeleton organization // non-traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0034329 // cell junction assembly // traceable author statement /// 0034351 // negative regulation of glial cell apoptotic process // inferred from mutant phenotype /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0035089 // establishment of apical/basal cell polarity // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from direct assay /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // traceable author statement /// 0045216 // cell-cell junction organization // inferred from mutant phenotype /// 0045216 // cell-cell junction organization // traceable author statement /// 0046326 // positive regulation of glucose import // inferred from sequence or structural similarity /// 0046903 // secretion // non-traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048194 // Golgi vesicle budding // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0060252 // positive regulation of glial cell proliferation // inferred from mutant phenotype /// 0061024 // membrane organization // non-traceable author statement /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070830 // tight junction assembly // traceable author statement /// 0090004 // positive regulation of establishment of protein localization to plasma membrane // inferred from sequence or structural similarity /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from mutant phenotype 0000133 // polarisome // traceable author statement /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045171 // intercellular bridge // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004697 // protein kinase C activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // traceable author statement /// 0005543 // phospholipid binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -13.00 217.60 -0.49 0.64 0.70 -4.61
203755_at 203755_at NM_001211 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001211.2 /DEF=Homo sapiens budding uninhibited by benzimidazoles 1 (yeast homolog), beta (BUB1B), mRNA. /FEA=mRNA /GEN=BUB1B /PROD=budding uninhibited by benzimidazoles 1 (yeasthomolog), beta /DB_XREF=gi:5729749 /UG=Hs.36708 budding uninhibited by benzimidazoles 1 (yeast homolog), beta /FL=gb:AF053306.1 gb:AF035933.1 gb:AF068760.1 gb:AF046918.1 gb:AF107297.1 gb:AF046079.2 gb:NM_001211.2 NM_001211 BUB1 mitotic checkpoint serine/threonine kinase B BUB1B 701 NM_001211 0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // non-traceable author statement /// 0007051 // spindle organization // non-traceable author statement /// 0007067 // mitotic nuclear division // non-traceable author statement /// 0007091 // metaphase/anaphase transition of mitotic cell cycle // inferred from electronic annotation /// 0007093 // mitotic cell cycle checkpoint // traceable author statement /// 0007094 // mitotic spindle assembly checkpoint // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034501 // protein localization to kinetochore // inferred from physical interaction /// 0048015 // phosphatidylinositol-mediated signaling // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0071459 // protein localization to chromosome, centromeric region // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0000776 // kinetochore // non-traceable author statement /// 0000776 // kinetochore // traceable author statement /// 0000777 // condensed chromosome kinetochore // inferred from direct assay /// 0000778 // condensed nuclear chromosome kinetochore // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0051233 // spindle midzone // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 8.17 138.89 0.49 0.64 0.70 -4.61
214328_s_at 214328_s_at R01140 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:R01140 /FEA=EST /DB_XREF=gi:750876 /DB_XREF=est:ye88e02.s1 /CLONE=IMAGE:124826 /UG=Hs.289088 heat shock 90kD protein 1, alpha R01140 heat shock protein 90kDa alpha (cytosolic), class A member 1 HSP90AA1 3320 NM_001017963 /// NM_005348 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001764 // neuron migration // inferred from electronic annotation /// 0003009 // skeletal muscle contraction // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006457 // protein folding // inferred from electronic annotation /// 0006839 // mitochondrial transport // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // non-traceable author statement /// 0007165 // signal transduction // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0009408 // response to heat // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0010592 // positive regulation of lamellipodium assembly // inferred from electronic annotation /// 0010659 // cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0042026 // protein refolding // traceable author statement /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045040 // protein import into mitochondrial outer membrane // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051131 // chaperone-mediated protein complex assembly // inferred from direct assay /// 0060452 // positive regulation of cardiac muscle contraction // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071682 // endocytic vesicle lumen // traceable author statement 0000166 // nucleotide binding // traceable author statement /// 0002134 // UTP binding // inferred from electronic annotation /// 0002135 // CTP binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017098 // sulfonylurea receptor binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0030235 // nitric-oxide synthase regulator activity // inferred from direct assay /// 0030911 // TPR domain binding // inferred from direct assay /// 0030911 // TPR domain binding // traceable author statement /// 0032564 // dATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0044325 // ion channel binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation -86.13 2207.49 -0.49 0.64 0.70 -4.61
219735_s_at 219735_s_at NM_014553 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014553.1 /DEF=Homo sapiens LBP protein (LBP-9), mRNA. /FEA=mRNA /GEN=LBP-9 /PROD=LBP protein /DB_XREF=gi:7657298 /UG=Hs.114747 LBP protein; likely ortholog of mouse CRTR-1 /FL=gb:AF198488.1 gb:NM_014553.1 NM_014553 transcription factor CP2-like 1 TFCP2L1 29842 NM_014553 /// XM_005263651 /// XM_005263652 /// XM_006712459 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006694 // steroid biosynthetic process // traceable author statement /// 0007028 // cytoplasm organization // inferred from electronic annotation /// 0007431 // salivary gland development // inferred from electronic annotation /// 0007565 // female pregnancy // traceable author statement /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0045927 // positive regulation of growth // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 7.02 46.49 0.49 0.64 0.70 -4.61
215600_x_at 215600_x_at AK022174 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK022174.1 /DEF=Homo sapiens cDNA FLJ12112 fis, clone MAMMA1000043. /FEA=mRNA /DB_XREF=gi:10433510 /UG=Hs.288793 Homo sapiens cDNA FLJ12112 fis, clone MAMMA1000043 AK022174 F-box and WD repeat domain containing 12 FBXW12 285231 NM_001159927 /// NM_001159929 /// NM_207102 /// XR_245120 8.48 57.94 0.49 0.64 0.70 -4.61
216505_x_at 216505_x_at AL118502 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL118502 /DEF=Human DNA sequence from clone RP11-371L19 on chromosome 20 Contains a novel gene, a gene similar to the gene for ribosomal protein S10, ESTs, STSs, GSSs and CpG islands /FEA=mRNA_3 /DB_XREF=gi:8894621 /UG=Hs.284299 Human DNA sequence from clone RP11-371L19 on chromosome 20 Contains a novel gene, a gene similar to the gene for ribosomal protein S10, ESTs, STSs, GSSs and CpG islands AL118502 RPS10L -15.98 337.26 -0.49 0.64 0.70 -4.61
219423_x_at 219423_x_at NM_003790 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003790.1 /DEF=Homo sapiens tumor necrosis factor receptor superfamily, member 12 (translocating chain-association membrane protein) (TNFRSF12), mRNA. /FEA=mRNA /GEN=TNFRSF12 /PROD=tumor necrosis factor receptor superfamily,member 12 /DB_XREF=gi:4507568 /UG=Hs.180338 tumor necrosis factor receptor superfamily, member 12 (translocating chain-association membrane protein) /FL=gb:U72763.1 gb:U74611.1 gb:U78029.1 gb:U94501.1 gb:U94502.1 gb:NM_003790.1 NM_003790 tumor necrosis factor receptor superfamily, member 25 TNFRSF25 8718 NM_001039664 /// NM_003790 /// NM_148965 /// NM_148966 /// NM_148967 /// NM_148968 /// NM_148969 /// NM_148970 /// NM_148974 0006915 // apoptotic process // non-traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0033209 // tumor necrosis factor-mediated signaling pathway // traceable author statement /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004872 // receptor activity // non-traceable author statement /// 0005031 // tumor necrosis factor-activated receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 8.10 65.17 0.49 0.64 0.71 -4.61
201578_at 201578_at NM_005397 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005397.1 /DEF=Homo sapiens podocalyxin-like (PODXL), mRNA. /FEA=mRNA /GEN=PODXL /PROD=podocalyxin-like /DB_XREF=gi:4885556 /UG=Hs.16426 podocalyxin-like /FL=gb:U97519.1 gb:NM_005397.1 NM_005397 podocalyxin-like PODXL 5420 NM_001018111 /// NM_005397 0007155 // cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // inferred from sequence or structural similarity /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0022408 // negative regulation of cell-cell adhesion // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0032534 // regulation of microvillus assembly // inferred from sequence or structural similarity /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from direct assay /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0072015 // glomerular visceral epithelial cell development // inferred from sequence or structural similarity /// 0072175 // epithelial tube formation // inferred from sequence or structural similarity 0001726 // ruffle // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005902 // microvillus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from direct assay /// 0030175 // filopodium // inferred from direct assay /// 0031528 // microvillus membrane // inferred from sequence or structural similarity /// 0036057 // slit diaphragm // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation /// 0044297 // cell body // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 47.52 991.84 0.49 0.64 0.71 -4.61
200627_at 200627_at BC003005 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003005.1 /DEF=Homo sapiens, unactive progesterone receptor, 23 kD, clone MGC:4004, mRNA, complete cds. /FEA=mRNA /PROD=unactive progesterone receptor, 23 kD /DB_XREF=gi:12804292 /UG=Hs.278270 unactive progesterone receptor, 23 kD /FL=gb:BC003005.1 gb:L24804.1 gb:NM_006601.1 BC003005 prostaglandin E synthase 3 (cytosolic) PTGES3 10728 NM_001282601 /// NM_001282602 /// NM_001282603 /// NM_001282604 /// NM_001282605 /// NM_006601 /// NR_104219 /// XM_005268576 /// XM_006719199 /// XR_245889 /// XR_429072 0000723 // telomere maintenance // traceable author statement /// 0001516 // prostaglandin biosynthetic process // inferred from direct assay /// 0006278 // RNA-dependent DNA replication // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0019371 // cyclooxygenase pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0070389 // chaperone cofactor-dependent protein refolding // inferred from direct assay 0000781 // chromosome, telomeric region // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005697 // telomerase holoenzyme complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003720 // telomerase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016853 // isomerase activity // inferred from electronic annotation /// 0050220 // prostaglandin-E synthase activity // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay -27.80 1225.22 -0.49 0.64 0.71 -4.61
208637_x_at 208637_x_at BC003576 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003576.1 /DEF=Homo sapiens, actinin, alpha 1, clone MGC:2358, mRNA, complete cds. /FEA=mRNA /PROD=actinin, alpha 1 /DB_XREF=gi:13097755 /UG=Hs.119000 actinin, alpha 1 /FL=gb:NM_001102.2 gb:BC003576.1 BC003576 actinin, alpha 1 ACTN1 87 NM_001102 /// NM_001130004 /// NM_001130005 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0034329 // cell junction assembly // traceable author statement /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0048041 // focal adhesion assembly // inferred from mutant phenotype /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051271 // negative regulation of cellular component movement // inferred from mutant phenotype /// 0051764 // actin crosslink formation // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031143 // pseudopodium // traceable author statement /// 0042995 // cell projection // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017166 // vinculin binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation 23.97 538.89 0.49 0.64 0.71 -4.61
201975_at 201975_at NM_002956 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002956.1 /DEF=Homo sapiens restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) (RSN), mRNA. /FEA=mRNA /GEN=RSN /PROD=restin (Reed-Steinberg cell-expressedintermediate filament-associated protein) /DB_XREF=gi:4506750 /UG=Hs.31638 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) /FL=gb:NM_002956.1 NM_002956 CAP-GLY domain containing linker protein 1 CLIP1 6249 NM_001247997 /// NM_002956 /// NM_198240 /// XM_005253593 /// XM_005253594 /// XM_005253595 /// XM_006719551 /// XM_006719552 /// XM_006719553 /// XM_006719554 /// XM_006719555 0000278 // mitotic cell cycle // traceable author statement /// 0001578 // microtubule bundle formation // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0007067 // mitotic nuclear division // traceable author statement /// 0031116 // positive regulation of microtubule polymerization // inferred from mutant phenotype 0000776 // kinetochore // traceable author statement /// 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from mutant phenotype /// 0005874 // microtubule // inferred from sequence or structural similarity /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005882 // intermediate filament // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0035371 // microtubule plus-end // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0044354 // macropinosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0015631 // tubulin binding // inferred from direct assay /// 0042803 // protein homodimerization activity // traceable author statement /// 0046872 // metal ion binding // non-traceable author statement /// 0051010 // microtubule plus-end binding // inferred from direct assay 10.20 144.70 0.49 0.64 0.71 -4.61
206445_s_at 206445_s_at NM_001536 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001536.1 /DEF=Homo sapiens HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 2 (HRMT1L2), mRNA. /FEA=mRNA /GEN=HRMT1L2 /PROD=HMT1 (hnRNP methyltransferase, S.cerevisiae)-like 2 /DB_XREF=gi:4504496 /UG=Hs.20521 HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 2 /FL=gb:D66904.1 gb:NM_001536.1 NM_001536 protein arginine methyltransferase 1 PRMT1 3276 NM_001207042 /// NM_001536 /// NM_198318 /// NM_198319 /// NR_033397 /// XM_005258842 /// XM_005258844 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // not recorded /// 0006479 // protein methylation // traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016571 // histone methylation // inferred from direct assay /// 0018216 // peptidyl-arginine methylation // inferred from direct assay /// 0019919 // peptidyl-arginine methylation, to asymmetrical-dimethyl arginine // not recorded /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032259 // methylation // inferred from electronic annotation /// 0034969 // histone arginine methylation // inferred from electronic annotation /// 0035246 // peptidyl-arginine N-methylation // inferred from electronic annotation /// 0035247 // peptidyl-arginine omega-N-methylation // inferred from electronic annotation /// 0043985 // histone H4-R3 methylation // inferred from direct assay /// 0045653 // negative regulation of megakaryocyte differentiation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // traceable author statement /// 0008170 // N-methyltransferase activity // inferred from direct assay /// 0008170 // N-methyltransferase activity // inferred from mutant phenotype /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0008469 // histone-arginine N-methyltransferase activity // inferred from electronic annotation /// 0016274 // protein-arginine N-methyltransferase activity // inferred from electronic annotation /// 0016275 // [cytochrome c]-arginine N-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030519 // snoRNP binding // inferred from electronic annotation /// 0035241 // protein-arginine omega-N monomethyltransferase activity // inferred from electronic annotation /// 0035242 // protein-arginine omega-N asymmetric methyltransferase activity // not recorded /// 0042054 // histone methyltransferase activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0044020 // histone methyltransferase activity (H4-R3 specific) // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 30.77 730.99 0.49 0.64 0.71 -4.61
214351_x_at 214351_x_at AA789278 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA789278 /FEA=EST /DB_XREF=gi:2849398 /DB_XREF=est:aj28b10.s1 /CLONE=1391611 /UG=Hs.180842 ribosomal protein L13 AA789278 ribosomal protein L13 /// small nucleolar RNA, C/D box 68 RPL13 /// SNORD68 6137 /// 606500 NM_000977 /// NM_001243130 /// NM_001243131 /// NM_033251 /// NR_002450 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0022626 // cytosolic ribosome // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -115.48 1776.41 -0.49 0.64 0.71 -4.61
201913_s_at 201913_s_at NM_025233 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025233.1 /DEF=Homo sapiens nucleotide binding protein (NBP), mRNA. /FEA=mRNA /GEN=NBP /PROD=nucleotide binding protein /DB_XREF=gi:13376837 /UG=Hs.296422 nucleotide binding protein /FL=gb:NM_025233.1 gb:AF208536.1 NM_025233 CoA synthase COASY 80347 NM_001042529 /// NM_001042530 /// NM_001042531 /// NM_001042532 /// NM_025233 /// XM_006722116 /// XR_429926 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009108 // coenzyme biosynthetic process // traceable author statement /// 0015937 // coenzyme A biosynthetic process // inferred from direct assay /// 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation /// 0015937 // coenzyme A biosynthetic process // traceable author statement /// 0015939 // pantothenate metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004140 // dephospho-CoA kinase activity // inferred from direct assay /// 0004595 // pantetheine-phosphate adenylyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 8.57 139.24 0.49 0.64 0.71 -4.61
221943_x_at 221943_x_at AW303136 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW303136 /FEA=EST /DB_XREF=gi:6712816 /DB_XREF=est:xr59c08.x1 /CLONE=IMAGE:2764430 /UG=Hs.2017 ribosomal protein L38 AW303136 ribosomal protein L38 RPL38 6169 NM_000999 /// NM_001035258 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001503 // ossification // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034463 // 90S preribosome assembly // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048318 // axial mesoderm development // inferred from electronic annotation 0005829 // cytosol // traceable author statement /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0033291 // eukaryotic 80S initiation complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement 51.95 599.55 0.49 0.64 0.71 -4.61
208074_s_at 208074_s_at NM_021575 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021575.1 /DEF=Homo sapiens adaptor-related protein complex 2, sigma 1 subunit (AP2S1), transcript variant AP17delta, mRNA. /FEA=mRNA /GEN=AP2S1 /PROD=adaptor-related protein complex 2, sigma 1subunit, isoform AP17delta /DB_XREF=gi:11038642 /UG=Hs.119591 adaptor-related protein complex 2, sigma 1 subunit /FL=gb:NM_021575.1 NM_021575 adaptor-related protein complex 2, sigma 1 subunit AP2S1 1175 NM_004069 /// NM_021575 /// XM_005258499 /// XM_005258500 /// XM_006723004 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0030100 // regulation of endocytosis // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048268 // clathrin coat assembly // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // traceable author statement /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement 0005215 // transporter activity // non-traceable author statement /// 0008565 // protein transporter activity // non-traceable author statement 36.40 726.62 0.49 0.64 0.71 -4.61
208836_at 208836_at U51478 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U51478.1 /DEF=Human sodiumpotassium-transporting ATPase beta-3 subunit mRNA, complete cds. /FEA=mRNA /PROD=sodiumpotassium-transporting ATPase beta-3subunit /DB_XREF=gi:1522634 /UG=Hs.76941 ATPase, Na+K+ transporting, beta 3 polypeptide /FL=gb:U51478.1 gb:NM_001679.1 U51478 ATPase, Na+/K+ transporting, beta 3 polypeptide ATP1B3 483 NM_001679 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0030001 // metal ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // traceable author statement /// 0035725 // sodium ion transmembrane transport // inferred from electronic annotation /// 0035725 // sodium ion transmembrane transport // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0055085 // transmembrane transport // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 35.98 1276.99 0.48 0.64 0.71 -4.61
221419_s_at 221419_s_at NM_013307 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013307.1 /DEF=Homo sapiens non-functional folate binding protein (HSAF000381), mRNA. /FEA=CDS /GEN=HSAF000381 /PROD=non-functional folate binding protein /DB_XREF=gi:7019412 /FL=gb:NM_013307.1 NM_013307 27.38 442.81 0.48 0.64 0.71 -4.61
208946_s_at 208946_s_at AF139131 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF139131.1 /DEF=Homo sapiens beclin 1 (BECN1) mRNA, complete cds. /FEA=mRNA /GEN=BECN1 /PROD=beclin 1 /DB_XREF=gi:4680380 /UG=Hs.12272 beclin 1 (coiled-coil, myosin-like BCL2-interacting protein) /FL=gb:AF077301.1 gb:NM_003766.1 gb:AF139131.1 AF139131 beclin 1, autophagy related BECN1 8678 NM_003766 /// XM_005257758 /// XM_005257759 /// XM_005257760 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000910 // cytokinesis // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006968 // cellular defense response // traceable author statement /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016239 // positive regulation of macroautophagy // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0048666 // neuron development // inferred from electronic annotation /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051707 // response to other organism // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0071275 // cellular response to aluminum ion // inferred from electronic annotation /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation -8.22 235.24 -0.48 0.64 0.71 -4.61
200975_at 200975_at NM_000310 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000310.1 /DEF=Homo sapiens palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) (PPT1), mRNA. /FEA=mRNA /GEN=PPT1 /PROD=palmitoyl-protein thioesterase 1(ceroid-lipofuscinosis, neuronal 1, infantile) /DB_XREF=gi:4506030 /UG=Hs.3873 palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) /FL=gb:U44772.1 gb:NM_000310.1 NM_000310 palmitoyl-protein thioesterase 1 PPT1 5538 NM_000310 /// NM_001142604 /// XM_005271007 /// XM_005271008 0002084 // protein depalmitoylation // inferred from direct assay /// 0002084 // protein depalmitoylation // inferred from sequence or structural similarity /// 0006309 // apoptotic DNA fragmentation // inferred from direct assay /// 0006464 // cellular protein modification process // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0006907 // pinocytosis // inferred from mutant phenotype /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007042 // lysosomal lumen acidification // inferred from mutant phenotype /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007399 // nervous system development // inferred from mutant phenotype /// 0007420 // brain development // inferred from mutant phenotype /// 0007601 // visual perception // inferred from electronic annotation /// 0007625 // grooming behavior // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008306 // associative learning // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0015031 // protein transport // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from direct assay /// 0030149 // sphingolipid catabolic process // traceable author statement /// 0030163 // protein catabolic process // non-traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0031579 // membrane raft organization // inferred from mutant phenotype /// 0032429 // regulation of phospholipase A2 activity // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from mutant phenotype /// 0044257 // cellular protein catabolic process // inferred from electronic annotation /// 0044265 // cellular macromolecule catabolic process // inferred from electronic annotation /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048549 // positive regulation of pinocytosis // inferred from mutant phenotype /// 0048666 // neuron development // traceable author statement /// 0050803 // regulation of synapse structure and activity // non-traceable author statement /// 0050896 // response to stimulus // inferred from electronic annotation /// 0051181 // cofactor transport // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from mutant phenotype 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008474 // palmitoyl-(protein) hydrolase activity // inferred from direct assay /// 0008474 // palmitoyl-(protein) hydrolase activity // inferred from mutant phenotype /// 0008474 // palmitoyl-(protein) hydrolase activity // inferred from sequence or structural similarity /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation 8.12 433.11 0.48 0.64 0.71 -4.61
201811_x_at 201811_x_at NM_004844 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004844.1 /DEF=Homo sapiens SH3-domain binding protein 5 (BTK-associated) (SH3BP5), mRNA. /FEA=mRNA /GEN=SH3BP5 /PROD=SH3-domain binding protein 5 (BTK-associated) /DB_XREF=gi:4759057 /UG=Hs.109150 SH3-domain binding protein 5 (BTK-associated) /FL=gb:AB005047.1 gb:NM_004844.1 NM_004844 SH3-domain binding protein 5 (BTK-associated) SH3BP5 9467 NM_001018009 /// NM_004844 /// XM_006713420 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0035556 // intracellular signal transduction // inferred from direct assay 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation -20.13 514.29 -0.48 0.64 0.71 -4.61
202686_s_at 202686_s_at NM_021913 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021913.1 /DEF=Homo sapiens AXL receptor tyrosine kinase (AXL), transcript variant 1, mRNA. /FEA=mRNA /GEN=AXL /PROD=AXL receptor tyrosine kinase isoform 1precursor /DB_XREF=gi:11863122 /UG=Hs.83341 AXL receptor tyrosine kinase /FL=gb:NM_021913.1 NM_021913 AXL receptor tyrosine kinase AXL 558 NM_001278599 /// NM_001699 /// NM_021913 0001764 // neuron migration // inferred from electronic annotation /// 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from direct assay /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006909 // phagocytosis // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0021885 // forebrain cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0032689 // negative regulation of interferon-gamma production // inferred from direct assay /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032825 // positive regulation of natural killer cell differentiation // inferred from direct assay /// 0032940 // secretion by cell // inferred from electronic annotation /// 0034101 // erythrocyte homeostasis // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0035457 // cellular response to interferon-alpha // inferred from direct assay /// 0042698 // ovulation cycle // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043277 // apoptotic cell clearance // inferred from electronic annotation /// 0043491 // protein kinase B signaling // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0048469 // cell maturation // inferred from expression pattern /// 0051250 // negative regulation of lymphocyte activation // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from electronic annotation /// 0060068 // vagina development // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from direct assay /// 0097028 // dendritic cell differentiation // inferred from expression pattern /// 2000669 // negative regulation of dendritic cell apoptotic process // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001786 // phosphatidylserine binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0032036 // myosin heavy chain binding // inferred from electronic annotation /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 38.80 464.45 0.48 0.65 0.71 -4.61
209131_s_at 209131_s_at U55936 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U55936.1 /DEF=Human SNAP-23 mRNA, complete cds. /FEA=mRNA /PROD=SNAP-23 /DB_XREF=gi:1374812 /UG=Hs.184376 synaptosomal-associated protein, 23kD /FL=gb:BC000148.2 gb:BC003686.1 gb:U55936.1 gb:Y09567.1 U55936 synaptosomal-associated protein, 23kDa SNAP23 8773 NM_003825 /// NM_130798 /// XM_006720725 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006903 // vesicle targeting // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061025 // membrane fusion // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042581 // specific granule // inferred from direct assay /// 0042582 // azurophil granule // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -10.20 128.25 -0.48 0.65 0.71 -4.61
216081_at 216081_at AK027151 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK027151.1 /DEF=Homo sapiens cDNA: FLJ23498 fis, clone LNG02683. /FEA=mRNA /DB_XREF=gi:10440206 /UG=Hs.306904 Homo sapiens cDNA: FLJ23498 fis, clone LNG02683 AK027151 laminin, alpha 4 LAMA4 3910 NM_001105206 /// NM_001105207 /// NM_001105208 /// NM_001105209 /// NM_002290 /// XM_005266983 /// XM_005266984 /// XM_006715480 /// XM_006715481 0001568 // blood vessel development // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005605 // basal lamina // traceable author statement /// 0005606 // laminin-1 complex // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement 9.00 97.75 0.48 0.65 0.71 -4.61
204757_s_at 204757_s_at R61539 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:R61539 /FEA=EST /DB_XREF=gi:832234 /DB_XREF=est:yh16f01.s1 /CLONE=IMAGE:37799 /UG=Hs.26899 KIAA0285 gene product /FL=gb:AB006623.1 gb:NM_014807.1 R61539 C2CD2-like C2CD2L 9854 NM_001290474 /// NM_014807 /// XM_005271738 /// XM_005271739 /// XM_005271740 /// XM_005271741 /// XM_005271742 /// XM_006718948 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation -7.67 41.04 -0.48 0.65 0.71 -4.61
208860_s_at 208860_s_at U09820 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U09820.1 /DEF=Human helicase II (RAD54L) mRNA, complete cds. /FEA=mRNA /GEN=RAD54L /PROD=helicase II /DB_XREF=gi:606832 /UG=Hs.96264 alpha thalassemiamental retardation syndrome X-linked (RAD54 (S. cerevisiae) homolog) /FL=gb:U09820.1 gb:NM_000489.1 gb:U72937.2 U09820 alpha thalassemia/mental retardation syndrome X-linked ATRX 546 NM_000489 /// NM_138270 /// NM_138271 /// XM_005262153 /// XM_005262154 /// XM_005262155 /// XM_005262156 /// XM_005262157 /// XM_006724666 /// XM_006724667 /// XM_006724668 0006200 // ATP catabolic process // inferred from direct assay /// 0006281 // DNA repair // inferred from electronic annotation /// 0006306 // DNA methylation // traceable author statement /// 0006310 // DNA recombination // traceable author statement /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006336 // DNA replication-independent nucleosome assembly // inferred from mutant phenotype /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010571 // positive regulation of nuclear cell cycle DNA replication // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from sequence or structural similarity /// 0030900 // forebrain development // inferred from electronic annotation /// 0031297 // replication fork processing // inferred from sequence or structural similarity /// 0032206 // positive regulation of telomere maintenance // inferred from sequence or structural similarity /// 0032508 // DNA duplex unwinding // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0072711 // cellular response to hydroxyurea // inferred from sequence or structural similarity /// 1901581 // negative regulation of telomeric RNA transcription from RNA pol II promoter // inferred from sequence or structural similarity 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0031933 // telomeric heterochromatin // inferred from sequence or structural similarity /// 0070603 // SWI/SNF superfamily-type complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015616 // DNA translocase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035064 // methylated histone binding // inferred from direct assay /// 0042393 // histone binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from physical interaction -7.60 133.43 -0.48 0.65 0.71 -4.61
220796_x_at 220796_x_at NM_024881 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024881.1 /DEF=Homo sapiens hypothetical protein FLJ14251 (FLJ14251), mRNA. /FEA=mRNA /GEN=FLJ14251 /PROD=hypothetical protein FLJ14251 /DB_XREF=gi:13376323 /UG=Hs.214178 hypothetical protein FLJ14251 /FL=gb:NM_024881.1 NM_024881 solute carrier family 35, member E1 SLC35E1 79939 NM_024881 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 20.95 205.90 0.48 0.65 0.71 -4.61
220980_s_at 220980_s_at NM_031284 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031284.1 /DEF=Homo sapiens hypothetical protein DKFZp434B195 (DKFZP434B195), mRNA. /FEA=mRNA /GEN=DKFZP434B195 /PROD=hypothetical protein DKFZp434B195 /DB_XREF=gi:13775193 /FL=gb:NM_031284.1 NM_031284 ADP-dependent glucokinase ADPGK 83440 NM_031284 /// NR_023318 /// NR_023319 /// XM_006720712 /// XM_006720713 /// XM_006720714 /// XM_006720715 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolytic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0043843 // ADP-specific glucokinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 8.82 234.41 0.48 0.65 0.71 -4.61
208887_at 208887_at BC000733 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000733.1 /DEF=Homo sapiens, eukaryotic translation initiation factor 3, subunit 4 (delta, 44kD), clone MGC:2053, mRNA, complete cds. /FEA=mRNA /PROD=eukaryotic translation initiation factor 3,subunit 4 (delta, 44kD) /DB_XREF=gi:12653882 /UG=Hs.28081 eukaryotic translation initiation factor 3, subunit 4 (delta, 44kD) /FL=gb:AF094850.1 gb:BC000733.1 gb:AF020833.1 gb:U96074.1 gb:NM_003755.1 BC000733 eukaryotic translation initiation factor 3, subunit G EIF3G 8666 NM_003755 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -21.70 299.10 -0.47 0.65 0.72 -4.61
210707_x_at 210707_x_at U38980 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U38980.1 /DEF=Human PMS2 related (hPMSR6) mRNA, complete cds. /FEA=mRNA /GEN=hPMSR6 /PROD=hPMSR6 /DB_XREF=gi:1061425 /UG=Hs.306174 postmeiotic segregation increased 2-like 11 /FL=gb:U38980.1 U38980 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene DTX2P1-UPK3BP1-PMS2P11 441263 NR_023383 0006298 // mismatch repair // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0032300 // mismatch repair complex // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 7.05 113.65 0.47 0.65 0.72 -4.61
201030_x_at 201030_x_at NM_002300 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002300.1 /DEF=Homo sapiens lactate dehydrogenase B (LDHB), mRNA. /FEA=mRNA /GEN=LDHB /PROD=lactate dehydrogenase B /DB_XREF=gi:4557031 /UG=Hs.234489 lactate dehydrogenase B /FL=gb:BC002362.1 gb:NM_002300.1 NM_002300 lactate dehydrogenase B LDHB 3945 NM_001174097 /// NM_002300 /// XM_006719074 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006089 // lactate metabolic process // inferred from electronic annotation /// 0006090 // pyruvate metabolic process // traceable author statement /// 0006096 // glycolytic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004457 // lactate dehydrogenase activity // inferred from electronic annotation /// 0004459 // L-lactate dehydrogenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation -63.55 1992.53 -0.47 0.65 0.72 -4.61
202152_x_at 202152_x_at NM_003367 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003367.1 /DEF=Homo sapiens upstream transcription factor 2, c-fos interacting (USF2), mRNA. /FEA=mRNA /GEN=USF2 /PROD=upstream transcription factor 2, c-fosinteracting /DB_XREF=gi:4507846 /UG=Hs.93649 upstream transcription factor 2, c-fos interacting /FL=gb:NM_003367.1 NM_003367 upstream transcription factor 2, c-fos interacting USF2 7392 NM_003367 /// NM_207291 /// XM_005259197 0000430 // regulation of transcription from RNA polymerase II promoter by glucose // inferred by curator /// 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // inferred from mutant phenotype /// 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007595 // lactation // inferred from electronic annotation /// 0019086 // late viral transcription // inferred by curator /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0055088 // lipid homeostasis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation -13.73 105.96 -0.47 0.65 0.72 -4.61
212095_s_at 212095_s_at BE552421 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE552421 /FEA=EST /DB_XREF=gi:9794113 /DB_XREF=est:hw26b02.x1 /CLONE=IMAGE:3184011 /UG=Hs.7946 KIAA1288 protein BE552421 microtubule associated tumor suppressor 1 MTUS1 57509 NM_001001924 /// NM_001001925 /// NM_001001927 /// NM_001001931 /// NM_001166393 /// NM_020749 /// XM_005273577 /// XM_005273578 /// XM_005273579 /// XM_005273580 /// XM_005273581 /// XM_005273582 /// XM_005273583 /// XR_247126 0071375 // cellular response to peptide hormone stimulus // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation -24.57 356.44 -0.47 0.65 0.72 -4.61
200911_s_at 200911_s_at NM_006283 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006283.1 /DEF=Homo sapiens transforming, acidic coiled-coil containing protein 1 (TACC1), mRNA. /FEA=mRNA /GEN=TACC1 /PROD=transforming, acidic coiled-coil containingprotein 1 /DB_XREF=gi:5454099 /UG=Hs.173159 transforming, acidic coiled-coil containing protein 1 /FL=gb:AF049910.1 gb:NM_006283.1 NM_006283 transforming, acidic coiled-coil containing protein 1 TACC1 6867 NM_001122824 /// NM_001146216 /// NM_006283 /// XM_005273622 /// XM_005273624 /// XM_005273625 /// XM_005273626 /// XM_005273627 /// XM_005273628 /// XM_005273629 /// XM_005273630 /// XM_005273631 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022027 // interkinetic nuclear migration // inferred from electronic annotation /// 0032886 // regulation of microtubule-based process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation 28.58 1012.91 0.47 0.65 0.72 -4.61
201467_s_at 201467_s_at AI039874 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI039874 /FEA=EST /DB_XREF=gi:3279068 /DB_XREF=est:ox97c05.x1 /CLONE=IMAGE:1664264 /UG=Hs.80706 diaphorase (NADHNADPH) (cytochrome b-5 reductase) /FL=gb:J03934.1 gb:NM_000903.1 AI039874 NAD(P)H dehydrogenase, quinone 1 NQO1 1728 NM_000903 /// NM_001025433 /// NM_001025434 /// NM_001286137 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006809 // nitric oxide biosynthetic process // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0009636 // response to toxic substance // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003955 // NAD(P)H dehydrogenase (quinone) activity // inferred from electronic annotation /// 0004128 // cytochrome-b5 reductase activity, acting on NAD(P)H // traceable author statement /// 0004784 // superoxide dismutase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -17.92 162.01 -0.47 0.65 0.72 -4.61
200608_s_at 200608_s_at NM_006265 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006265.1 /DEF=Homo sapiens RAD21 (S. pombe) homolog (RAD21), mRNA. /FEA=mRNA /GEN=RAD21 /PROD=RAD21 (S. pombe) homolog /DB_XREF=gi:5453993 /UG=Hs.81848 RAD21 (S. pombe) homolog /FL=gb:D38551.1 gb:NM_006265.1 NM_006265 RAD21 homolog (S. pombe) RAD21 5885 NM_006265 0000278 // mitotic cell cycle // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // traceable author statement /// 0006310 // DNA recombination // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0071168 // protein localization to chromatin // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0008278 // cohesin complex // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0034991 // nuclear meiotic cohesin complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -17.67 310.56 -0.47 0.65 0.72 -4.61
201268_at 201268_at NM_002512 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002512.1 /DEF=Homo sapiens non-metastatic cells 2, protein (NM23B) expressed in (NME2), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=NME2 /PROD=non-metastatic cells 2, protein (NM23B)expressed in /DB_XREF=gi:4505408 /UG=Hs.275163 non-metastatic cells 2, protein (NM23B) expressed in /FL=gb:BC002476.1 gb:M36981.1 gb:L16785.1 gb:NM_002512.1 NM_002512 NME1-NME2 readthrough /// NME/NM23 nucleoside diphosphate kinase 2 NME1-NME2 /// NME2 4831 /// 654364 NM_001018136 /// NM_001018137 /// NM_001018138 /// NM_001018139 /// NM_001198682 /// NM_002512 /// NR_037149 0002762 // negative regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0006165 // nucleoside diphosphate phosphorylation // inferred from electronic annotation /// 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0006308 // DNA catabolic process // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009142 // nucleoside triphosphate biosynthetic process // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0014075 // response to amine // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043388 // positive regulation of DNA binding // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045618 // positive regulation of keratinocyte differentiation // inferred from mutant phenotype /// 0045682 // regulation of epidermis development // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from electronic annotation 0001726 // ruffle // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004536 // deoxyribonuclease activity // inferred from direct assay /// 0004550 // nucleoside diphosphate kinase activity // inferred from direct assay /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019215 // intermediate filament binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043024 // ribosomal small subunit binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -42.22 826.79 -0.47 0.66 0.72 -4.61
202028_s_at 202028_s_at BC000603 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC000603.1 /DEF=Homo sapiens, ribosomal protein L38, clone MGC:1637, mRNA, complete cds. /FEA=mRNA /PROD=ribosomal protein L38 /DB_XREF=gi:12653644 /UG=Hs.2017 ribosomal protein L38 /FL=gb:BC000603.1 gb:NM_000999.1 BC000603 ribosomal protein L38 RPL38 6169 NM_000999 /// NM_001035258 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001503 // ossification // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0034463 // 90S preribosome assembly // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048318 // axial mesoderm development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0033291 // eukaryotic 80S initiation complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement 47.90 470.20 0.47 0.66 0.72 -4.61
209831_x_at 209831_x_at AB004574 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB004574.1 /DEF=Homo sapiens mRNA for deoxyribonuclease II, complete cds. /FEA=mRNA /GEN=DNASE2 /PROD=deoxyribonuclease II /DB_XREF=gi:3184394 /UG=Hs.118243 deoxyribonuclease II, lysosomal /FL=gb:AF045937.1 gb:AF047016.1 gb:AB004574.1 gb:AF060222.1 gb:NM_001375.1 AB004574 deoxyribonuclease II, lysosomal DNASE2 1777 NM_001375 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0006259 // DNA metabolic process // traceable author statement /// 0006308 // DNA catabolic process // inferred from electronic annotation /// 0006309 // apoptotic DNA fragmentation // not recorded /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity // inferred from electronic annotation /// 0004531 // deoxyribonuclease II activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation -11.35 180.97 -0.46 0.66 0.72 -4.61
215177_s_at 215177_s_at AV733308 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV733308 /FEA=EST /DB_XREF=gi:10850853 /DB_XREF=est:AV733308 /CLONE=cdAADA11 /UG=Hs.227730 integrin, alpha 6 AV733308 integrin, alpha 6 ITGA6 3655 NM_000210 /// NM_001079818 /// XM_006712510 /// XM_006712511 0007044 // cell-substrate junction assembly // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0031581 // hemidesmosome assembly // traceable author statement /// 0031589 // cell-substrate adhesion // inferred from mutant phenotype /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from genetic interaction /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050900 // leukocyte migration // traceable author statement /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005604 // basement membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0034676 // integrin alpha6-beta4 complex // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043236 // laminin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -11.88 251.29 -0.46 0.66 0.72 -4.61
202461_at 202461_at NM_014239 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014239.1 /DEF=Homo sapiens eukaryotic translation initiation factor 2B, subunit 2 (beta, 39kD) (EIF2B2), mRNA. /FEA=mRNA /GEN=EIF2B2 /PROD=eukaryotic translation initiation factor 2B,subunit 2 (beta, 39kD) /DB_XREF=gi:7657057 /UG=Hs.170001 eukaryotic translation initiation factor 2B, subunit 2 (beta, 39kD) /FL=gb:BC000494.1 gb:BC003165.1 gb:AF035280.1 gb:NM_014239.1 NM_014239 eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa EIF2B2 8892 NM_014239 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // not recorded /// 0006446 // regulation of translational initiation // traceable author statement /// 0007417 // central nervous system development // inferred from mutant phenotype /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009408 // response to heat // traceable author statement /// 0009749 // response to glucose // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0014003 // oligodendrocyte development // inferred from mutant phenotype /// 0019509 // L-methionine salvage from methylthioadenosine // not recorded /// 0042552 // myelination // inferred from mutant phenotype /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043087 // regulation of GTPase activity // inferred from mutant phenotype /// 0043434 // response to peptide hormone // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from mutant phenotype /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051716 // cellular response to stimulus // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 0003743 // translation initiation factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from direct assay /// 0046523 // S-methyl-5-thioribose-1-phosphate isomerase activity // not recorded 12.85 448.32 0.46 0.66 0.72 -4.61
213655_at 213655_at AA502643 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA502643 /FEA=EST /DB_XREF=gi:2237610 /DB_XREF=est:ne42g05.s1 /CLONE=IMAGE:900056 /UG=Hs.79474 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, epsilon polypeptide AA502643 -117.78 1076.04 -0.46 0.66 0.72 -4.61
202053_s_at 202053_s_at L47162 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L47162.1 /DEF=Human fatty aldehyde dehydrogenase (FALDH) mRNA, complete cds. /FEA=mRNA /GEN=FALDH /PROD=fatty aldehyde dehydrogenase /DB_XREF=gi:1082035 /UG=Hs.159608 aldehyde dehydrogenase 3 family, member A2 /FL=gb:L47162.1 gb:U46689.1 gb:NM_000382.1 L47162 aldehyde dehydrogenase 3 family, member A2 ALDH3A2 224 NM_000382 /// NM_001031806 0006081 // cellular aldehyde metabolic process // inferred from direct assay /// 0006081 // cellular aldehyde metabolic process // non-traceable author statement /// 0006714 // sesquiterpenoid metabolic process // inferred from direct assay /// 0007417 // central nervous system development // inferred from mutant phenotype /// 0007422 // peripheral nervous system development // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008218 // bioluminescence // inferred from electronic annotation /// 0008544 // epidermis development // inferred from mutant phenotype /// 0033306 // phytol metabolic process // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from direct assay /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from mutant phenotype /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046577 // long-chain-alcohol oxidase activity // inferred from direct assay /// 0050061 // long-chain-aldehyde dehydrogenase activity // inferred from direct assay /// 0052814 // medium-chain-aldehyde dehydrogenase activity // inferred from direct assay 8.58 124.74 0.46 0.66 0.72 -4.61
208117_s_at 208117_s_at NM_031206 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031206.1 /DEF=Homo sapiens hypothetical protein FLJ12525 (FLJ12525), mRNA. /FEA=mRNA /GEN=FLJ12525 /PROD=hypothetical protein FLJ12525 /DB_XREF=gi:13654269 /FL=gb:NM_031206.1 NM_031206 LAS1-like (S. cerevisiae) LAS1L 81887 NM_001170649 /// NM_001170650 /// NM_031206 /// XM_005262301 /// XM_005262303 /// XM_005262304 /// XM_005262305 /// XM_005262306 /// XM_005262307 /// XR_244504 /// XR_430522 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0071339 // MLL1 complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 10.15 42.65 0.46 0.66 0.72 -4.61
201223_s_at 201223_s_at NM_002874 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002874.1 /DEF=Homo sapiens RAD23 (S. cerevisiae) homolog B (RAD23B), mRNA. /FEA=mRNA /GEN=RAD23B /PROD=RAD23 (S. cerevisiae) homolog B /DB_XREF=gi:4506386 /UG=Hs.178658 RAD23 (S. cerevisiae) homolog B /FL=gb:NM_002874.1 gb:D21090.1 NM_002874 RAD23 homolog B (S. cerevisiae) RAD23B 5887 NM_001244713 /// NM_001244724 /// NM_002874 0000715 // nucleotide-excision repair, DNA damage recognition // inferred from direct assay /// 0000715 // nucleotide-excision repair, DNA damage recognition // traceable author statement /// 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006289 // nucleotide-excision repair // inferred from direct assay /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0032434 // regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0071942 // XPC complex // inferred from direct assay 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0031593 // polyubiquitin binding // inferred from direct assay 28.05 230.28 0.46 0.66 0.72 -4.61
201368_at 201368_at U07802 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U07802 /DEF=Human Tis11d gene, complete cds /FEA=mRNA /DB_XREF=gi:984508 /UG=Hs.78909 butyrate response factor 2 (EGF-response factor 2) /FL=gb:BC005010.1 gb:NM_006887.1 U07802 ZFP36 ring finger protein-like 2 ZFP36L2 678 NM_006887 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006402 // mRNA catabolic process // inferred from sequence or structural similarity /// 0008283 // cell proliferation // traceable author statement /// 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from sequence or structural similarity /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0048103 // somatic stem cell division // inferred from sequence or structural similarity /// 0060216 // definitive hemopoiesis // inferred from sequence or structural similarity /// 1900153 // positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from sequence or structural similarity /// 2000737 // negative regulation of stem cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // inferred from direct assay /// 0035925 // mRNA 3'-UTR AU-rich region binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 11.93 301.79 0.46 0.66 0.72 -4.61
201060_x_at 201060_x_at AI537887 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI537887 /FEA=EST /DB_XREF=gi:4452022 /DB_XREF=est:tp32g06.x1 /CLONE=IMAGE:2189530 /UG=Hs.160483 erythrocyte membrane protein band 7.2 (stomatin) /FL=gb:M81635.1 gb:NM_004099.1 AI537887 stomatin STOM 2040 NM_001270526 /// NM_001270527 /// NM_004099 /// NM_198194 /// NR_073037 0051260 // protein homooligomerization // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 20.38 363.54 0.46 0.66 0.72 -4.61
200600_at 200600_at NM_002444 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002444.1 /DEF=Homo sapiens moesin (MSN), mRNA. /FEA=mRNA /GEN=MSN /PROD=moesin /DB_XREF=gi:4505256 /UG=Hs.170328 moesin /FL=gb:M69066.1 gb:NM_002444.1 NM_002444 moesin MSN 4478 NM_002444 /// XM_005262269 0006928 // cellular component movement // traceable author statement /// 0007159 // leukocyte cell-cell adhesion // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from genetic interaction /// 0022614 // membrane to membrane docking // inferred from expression pattern /// 0050900 // leukocyte migration // inferred from expression pattern /// 0061028 // establishment of endothelial barrier // inferred from genetic interaction /// 2000401 // regulation of lymphocyte migration // inferred from mutant phenotype 0001931 // uropod // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from physical interaction -47.20 1612.65 -0.46 0.66 0.72 -4.62
202857_at 202857_at NM_014255 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014255.1 /DEF=Homo sapiens transmembrane protein 4 (TMEM4), mRNA. /FEA=mRNA /GEN=TMEM4 /PROD=transmembrane protein 4 /DB_XREF=gi:7657175 /UG=Hs.8752 transmembrane protein 4 /FL=gb:AB015631.1 gb:NM_014255.1 NM_014255 canopy FGF signaling regulator 2 CNPY2 10330 NM_001190991 /// NM_014255 0010629 // negative regulation of gene expression // inferred from sequence or structural similarity /// 0010988 // regulation of low-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0045716 // positive regulation of low-density lipoprotein particle receptor biosynthetic process // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement 0005515 // protein binding // inferred from physical interaction 9.50 315.82 0.46 0.66 0.72 -4.62
209408_at 209408_at U63743 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U63743.1 /DEF=Homo sapiens mitotic centromere-associated kinesin mRNA, complete cds. /FEA=mRNA /PROD=mitotic centromere-associated kinesin /DB_XREF=gi:1695881 /UG=Hs.69360 kinesin-like 6 (mitotic centromere-associated kinesin) /FL=gb:NM_006845.2 gb:U63743.1 U63743 kinesin family member 2C KIF2C 11004 NM_006845 /// XM_005270394 /// XM_005270395 /// XM_005270396 0000278 // mitotic cell cycle // traceable author statement /// 0007018 // microtubule-based movement // traceable author statement /// 0007019 // microtubule depolymerization // inferred from direct assay /// 0007019 // microtubule depolymerization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0030951 // establishment or maintenance of microtubule cytoskeleton polarity // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051983 // regulation of chromosome segregation // inferred from mutant phenotype 0000775 // chromosome, centromeric region // inferred from direct assay /// 0000776 // kinetochore // inferred from direct assay /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from sequence or structural similarity /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0035371 // microtubule plus-end // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0019237 // centromeric DNA binding // traceable author statement /// 0051010 // microtubule plus-end binding // inferred from direct assay 8.13 185.01 0.46 0.66 0.72 -4.62
201025_at 201025_at AB018284 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB018284.1 /DEF=Homo sapiens mRNA for KIAA0741 protein, complete cds. /FEA=mRNA /GEN=KIAA0741 /PROD=KIAA0741 protein /DB_XREF=gi:3882202 /UG=Hs.158688 KIAA0741 gene product /FL=gb:AB018284.1 gb:AF078035.1 gb:NM_015904.1 AB018284 eukaryotic translation initiation factor 5B EIF5B 9669 NM_015904 /// XM_005264075 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from direct assay /// 0006446 // regulation of translational initiation // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 10.32 122.61 0.46 0.66 0.72 -4.62
201236_s_at 201236_s_at NM_006763 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006763.1 /DEF=Homo sapiens BTG family, member 2 (BTG2), mRNA. /FEA=mRNA /GEN=BTG2 /PROD=BTG family, member 2 /DB_XREF=gi:5802987 /UG=Hs.75462 BTG family, member 2 /FL=gb:U72649.1 gb:NM_006763.1 NM_006763 BTG family, member 2 BTG2 7832 NM_006763 0006281 // DNA repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006479 // protein methylation // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008306 // associative learning // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0021542 // dentate gyrus development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043434 // response to peptide hormone // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // inferred from direct assay /// 2000178 // negative regulation of neural precursor cell proliferation // inferred from electronic annotation 0070062 // extracellular vesicular exosome // inferred from direct assay 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 8.92 128.76 0.46 0.66 0.72 -4.62
211833_s_at 211833_s_at U19599 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U19599.1 /DEF=Human (BAX delta) mRNA, complete cds. /FEA=CDS /PROD=BAX delta /DB_XREF=gi:841237 /UG=Hs.159428 BCL2-associated X protein /FL=gb:U19599.1 U19599 BCL2-associated X protein BAX 581 NM_001291428 /// NM_001291429 /// NM_001291430 /// NM_001291431 /// NM_004324 /// NM_138761 /// NM_138762 /// NM_138763 /// NM_138764 /// NR_027882 /// XM_006723313 /// XM_006723314 0001101 // response to acid // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001776 // leukocyte homeostasis // inferred from electronic annotation /// 0001777 // T cell homeostatic proliferation // inferred from electronic annotation /// 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001783 // B cell apoptotic process // inferred from direct assay /// 0001822 // kidney development // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from direct assay /// 0001844 // protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0002262 // myeloid cell homeostasis // inferred from electronic annotation /// 0002352 // B cell negative selection // inferred from electronic annotation /// 0002358 // B cell homeostatic proliferation // inferred from electronic annotation /// 0002904 // positive regulation of B cell apoptotic process // inferred from electronic annotation /// 0006309 // apoptotic DNA fragmentation // inferred from mutant phenotype /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006808 // regulation of nitrogen utilization // inferred from electronic annotation /// 0006915 // apoptotic process // non-traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0006919 // activation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0006927 // transformed cell apoptotic process // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic annotation /// 0008053 // mitochondrial fusion // inferred from direct assay /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008625 // extrinsic apoptotic signaling pathway via death domain receptors // inferred by curator /// 0008630 // intrinsic apoptotic signaling pathway in response to DNA damage // not recorded /// 0008635 // activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c // inferred from direct assay /// 0008637 // apoptotic mitochondrial changes // inferred from direct assay /// 0009566 // fertilization // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009636 // response to toxic substance // inferred from direct assay /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0010248 // establishment or maintenance of transmembrane electrochemical gradient // inferred from direct assay /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021854 // hypothalamus development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0030264 // nuclear fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0032469 // endoplasmic reticulum calcium ion homeostasis // traceable author statement /// 0032471 // negative regulation of endoplasmic reticulum calcium ion concentration // inferred from electronic annotation /// 0032976 // release of matrix enzymes from mitochondria // inferred from direct assay /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033599 // regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0034644 // cellular response to UV // inferred from electronic annotation /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035234 // ectopic germ cell programmed cell death // inferred from electronic annotation /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043496 // regulation of protein homodimerization activity // inferred from direct assay /// 0043497 // regulation of protein heterodimerization activity // inferred from physical interaction /// 0043523 // regulation of neuron apoptotic process // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from direct assay /// 0043653 // mitochondrial fragmentation involved in apoptotic process // inferred from direct assay /// 0045136 // development of secondary sexual characteristics // inferred from electronic annotation /// 0046666 // retinal cell programmed cell death // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0048087 // positive regulation of developmental pigmentation // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048515 // spermatid differentiation // inferred from electronic annotation /// 0048597 // post-embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048872 // homeostasis of number of cells // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from direct assay /// 0060011 // Sertoli cell proliferation // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060058 // positive regulation of apoptotic process involved in mammary gland involution // inferred from electronic annotation /// 0060068 // vagina development // inferred from electronic annotation /// 0070059 // intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress // inferred from mutant phenotype /// 0070242 // thymocyte apoptotic process // inferred from electronic annotation /// 0071310 // cellular response to organic substance // inferred from electronic annotation /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from electronic annotation /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0097190 // apoptotic signaling pathway // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // not recorded /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 0097296 // activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway // inferred from electronic annotation /// 1900103 // positive regulation of endoplasmic reticulum unfolded protein response // inferred from mutant phenotype /// 1901030 // positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway // traceable author statement /// 1902108 // regulation of mitochondrial membrane permeability involved in apoptotic process // inferred from electronic annotation /// 1902110 // positive regulation of mitochondrial membrane permeability involved in apoptotic process // inferred from electronic annotation /// 1902262 // apoptotic process involved in patterning of blood vessels // inferred from electronic annotation /// 1902263 // apoptotic process involved in embryonic digit morphogenesis // inferred from electronic annotation /// 1902512 // positive regulation of apoptotic DNA fragmentation // inferred from mutant phenotype /// 1990009 // retinal cell apoptotic process // inferred from mutant phenotype /// 1990117 // B cell receptor apoptotic signaling pathway // inferred from direct assay /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005757 // mitochondrial permeability transition pore complex // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0046930 // pore complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097136 // Bcl-2 family protein complex // inferred from direct assay /// 0097144 // BAX complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from direct assay /// 0015267 // channel activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051434 // BH3 domain binding // inferred from direct assay /// 0051434 // BH3 domain binding // inferred from physical interaction 17.35 121.33 0.46 0.66 0.72 -4.62
217972_at 217972_at NM_017812 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017812.1 /DEF=Homo sapiens hypothetical protein FLJ20420 (FLJ20420), mRNA. /FEA=mRNA /GEN=FLJ20420 /PROD=hypothetical protein FLJ20420 /DB_XREF=gi:8923389 /UG=Hs.6693 hypothetical protein FLJ20420 /FL=gb:NM_017812.1 NM_017812 coiled-coil-helix-coiled-coil-helix domain containing 3 CHCHD3 54927 NM_017812 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007007 // inner mitochondrial membrane organization // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001227 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019902 // phosphatase binding // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from sequence or structural similarity 7.53 239.46 0.46 0.66 0.72 -4.62
201215_at 201215_at NM_005032 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005032.2 /DEF=Homo sapiens plastin 3 (T isoform) (PLS3), mRNA. /FEA=mRNA /GEN=PLS3 /PROD=plastin 3 precursor /DB_XREF=gi:7549808 /UG=Hs.4114 plastin 3 (T isoform) /FL=gb:M22299.1 gb:NM_005032.2 NM_005032 plastin 3 PLS3 5358 NM_001136025 /// NM_001172335 /// NM_001282337 /// NM_001282338 /// NM_005032 0060348 // bone development // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 29.40 1775.05 0.46 0.66 0.72 -4.62
203413_at 203413_at NM_006159 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006159.1 /DEF=Homo sapiens nel (chicken)-like 2 (NELL2), mRNA. /FEA=mRNA /GEN=NELL2 /PROD=nel (chicken)-like 2 /DB_XREF=gi:5453765 /UG=Hs.79389 nel (chicken)-like 2 /FL=gb:D83018.1 gb:NM_006159.1 NM_006159 NEL-like 2 (chicken) NELL2 4753 NM_001145107 /// NM_001145108 /// NM_001145109 /// NM_001145110 /// NM_006159 /// XM_005268905 0007155 // cell adhesion // non-traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005198 // structural molecule activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation 7.88 38.04 0.46 0.66 0.72 -4.62
207365_x_at 207365_x_at NM_014709 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014709.1 /DEF=Homo sapiens KIAA0570 gene product (KIAA0570), mRNA. /FEA=mRNA /GEN=KIAA0570 /PROD=KIAA0570 gene product /DB_XREF=gi:7662185 /UG=Hs.114293 KIAA0570 gene product /FL=gb:AB011142.1 gb:NM_014709.1 NM_014709 ubiquitin specific peptidase 34 USP34 9736 NM_014709 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0032781 // positive regulation of ATPase activity // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from direct assay 0001671 // ATPase activator activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // inferred from mutant phenotype /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation -14.87 150.91 -0.46 0.66 0.72 -4.62
211072_x_at 211072_x_at BC006481 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006481.1 /DEF=Homo sapiens, tubulin alpha 1, clone MGC:4387, mRNA, complete cds. /FEA=mRNA /PROD=tubulin alpha 1 /DB_XREF=gi:13623706 /FL=gb:BC006481.1 BC006481 tubulin, alpha 1b TUBA1B 10376 NM_006082 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 188.97 3931.74 0.46 0.66 0.72 -4.62
213603_s_at 213603_s_at BE138888 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE138888 /FEA=EST /DB_XREF=gi:8601388 /DB_XREF=est:xw97c06.x1 /CLONE=IMAGE:2835946 /UG=Hs.301175 HSPC022 protein BE138888 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) RAC2 5880 NM_002872 /// XM_006724286 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010310 // regulation of hydrogen peroxide metabolic process // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0030031 // cell projection assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0045453 // bone resorption // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0060263 // regulation of respiratory burst // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 17.88 510.56 0.45 0.66 0.73 -4.62
206176_at 206176_at NM_001718 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001718.2 /DEF=Homo sapiens bone morphogenetic protein 6 (BMP6), mRNA. /FEA=mRNA /GEN=BMP6 /PROD=bone morphogenetic protein 6 precursor /DB_XREF=gi:4809281 /UG=Hs.285671 bone morphogenetic protein 6 /FL=gb:M60315.1 gb:NM_001718.2 NM_001718 bone morphogenetic protein 6 BMP6 654 NM_001718 0001501 // skeletal system development // traceable author statement /// 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001654 // eye development // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0003323 // type B pancreatic cell development // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from direct assay /// 0014823 // response to activity // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from direct assay /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030539 // male genitalia development // inferred from electronic annotation /// 0032026 // response to magnesium ion // inferred from electronic annotation /// 0032332 // positive regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032349 // positive regulation of aldosterone biosynthetic process // inferred from direct assay /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0040007 // growth // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay /// 0050714 // positive regulation of protein secretion // non-traceable author statement /// 0051216 // cartilage development // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 2000105 // positive regulation of DNA-dependent DNA replication // non-traceable author statement /// 2000860 // positive regulation of aldosterone secretion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031988 // membrane-bounded vesicle // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0070700 // BMP receptor binding // inferred from physical interaction 29.15 630.73 0.45 0.66 0.73 -4.62
209356_x_at 209356_x_at AB030655 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB030655.1 /DEF=Homo sapiens mRNA for mutant p53 binding protein 1 (MBP1), complete cds. /FEA=mRNA /GEN=MBP1 /PROD=mutant p53 binding protein 1 (MBP1) /DB_XREF=gi:7328920 /UG=Hs.6059 EGF-containing fibulin-like extracellular matrix protein 2 /FL=gb:AF124486.1 gb:AB030655.1 AB030655 EGF containing fibulin-like extracellular matrix protein 2 EFEMP2 30008 NM_016938 /// NR_037718 0007165 // signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005604 // basement membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 9.38 148.79 0.45 0.66 0.73 -4.62
215492_x_at 215492_x_at AL035587 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL035587 /DEF=Human DNA sequence from clone RP3-475N16 on chromosome 6p12.3-21.2. Contains the genes for CTG4A, pre-T cell receptor alpha, a novel protein similar to RPL7A (60S ribosomal protein L7A) and the 3 end of gene KIAA0240. Contains ESTs, STSs, GSSs an... /FEA=mRNA_2 /DB_XREF=gi:6002306 /UG=Hs.169002 Human pre TCR alpha mRNA, partial cds AL035587 pre T-cell antigen receptor alpha PTCRA 171558 NM_001243168 /// NM_001243169 /// NM_001243170 /// NM_138296 0070244 // negative regulation of thymocyte apoptotic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction -19.38 124.81 -0.45 0.66 0.73 -4.62
212526_at 212526_at AK002207 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK002207.1 /DEF=Homo sapiens cDNA FLJ11345 fis, clone PLACE1010877, highly similar to Homo sapiens mRNA for KIAA0610 protein. /FEA=mRNA /DB_XREF=gi:7023938 /UG=Hs.118087 KIAA0610 protein AK002207 spastic paraplegia 20 (Troyer syndrome) SPG20 23111 NM_001142294 /// NM_001142295 /// NM_001142296 /// NM_015087 /// XM_005266313 /// XM_005266314 /// XM_005266315 /// XM_005266316 /// XM_005266317 0000910 // cytokinesis // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0009838 // abscission // inferred from mutant phenotype /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0034389 // lipid particle organization // inferred from electronic annotation /// 0048698 // negative regulation of collateral sprouting in absence of injury // inferred from electronic annotation /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051301 // cell division // inferred from mutant phenotype /// 0051881 // regulation of mitochondrial membrane potential // inferred from mutant phenotype /// 0060612 // adipose tissue development // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005811 // lipid particle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction -8.50 179.38 -0.45 0.67 0.73 -4.62
204354_at 204354_at NM_015450 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015450.1 /DEF=Homo sapiens DKFZP586D211 protein (DKFZP586D211), mRNA. /FEA=mRNA /GEN=DKFZP586D211 /PROD=DKFZP586D211 protein /DB_XREF=gi:13123773 /UG=Hs.31968 DKFZP586D211 protein /FL=gb:BC002923.1 gb:NM_015450.1 NM_015450 protection of telomeres 1 POT1 25913 NM_001042594 /// NM_015450 /// NR_003102 /// NR_003103 /// NR_003104 /// XM_006715917 0000723 // telomere maintenance // traceable author statement /// 0007004 // telomere maintenance via telomerase // inferred from direct assay /// 0016233 // telomere capping // inferred from genetic interaction /// 0016233 // telomere capping // inferred from mutant phenotype /// 0032203 // telomere formation via telomerase // inferred from direct assay /// 0032211 // negative regulation of telomere maintenance via telomerase // inferred from mutant phenotype /// 0032212 // positive regulation of telomere maintenance via telomerase // inferred from mutant phenotype /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0051096 // positive regulation of helicase activity // inferred from direct assay /// 0051973 // positive regulation of telomerase activity // inferred from direct assay /// 0051974 // negative regulation of telomerase activity // inferred from direct assay /// 0060383 // positive regulation of DNA strand elongation // inferred from direct assay 0000781 // chromosome, telomeric region // inferred from direct assay /// 0000783 // nuclear telomere cap complex // inferred from direct assay /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0010521 // telomerase inhibitor activity // inferred from direct assay /// 0017151 // DEAD/H-box RNA helicase binding // inferred from physical interaction /// 0043047 // single-stranded telomeric DNA binding // inferred from direct assay /// 0043047 // single-stranded telomeric DNA binding // inferred from mutant phenotype 6.67 85.64 0.45 0.67 0.73 -4.62
200059_s_at 200059_s_at BC001360 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001360.1 /DEF=Homo sapiens, ras homolog gene family, member A, clone MGC:2330, mRNA, complete cds. /FEA=mRNA /PROD=ras homolog gene family, member A /DB_XREF=gi:12655024 /UG=Hs.77273 ras homolog gene family, member A /FL=gb:NM_001664.1 gb:BC001360.1 gb:L25080.1 BC001360 ras homolog family member A RHOA 387 NM_001664 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006184 // GTP catabolic process // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008064 // regulation of actin polymerization or depolymerization // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0031098 // stress-activated protein kinase signaling cascade // inferred from electronic annotation /// 0032467 // positive regulation of cytokinesis // inferred from mutant phenotype /// 0033144 // negative regulation of intracellular steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0033688 // regulation of osteoblast proliferation // inferred from sequence or structural similarity /// 0036089 // cleavage furrow formation // inferred from direct assay /// 0042346 // positive regulation of NF-kappaB import into nucleus // non-traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0043149 // stress fiber assembly // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from electronic annotation /// 0043297 // apical junction assembly // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0043931 // ossification involved in bone maturation // inferred from sequence or structural similarity /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // traceable author statement /// 0050771 // negative regulation of axonogenesis // traceable author statement /// 0050772 // positive regulation of axonogenesis // traceable author statement /// 0050773 // regulation of dendrite development // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0061383 // trabecula morphogenesis // inferred from sequence or structural similarity /// 0071803 // positive regulation of podosome assembly // inferred from electronic annotation /// 0090307 // spindle assembly involved in mitosis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005938 // cell cortex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030054 // cell junction // traceable author statement /// 0030424 // axon // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043296 // apical junction complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation -45.02 2021.89 -0.45 0.67 0.73 -4.62
204207_s_at 204207_s_at AB012142 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB012142.1 /DEF=Homo sapiens hCAP1a mRNA for mRNA capping enzyme, complete cds. /FEA=mRNA /GEN=hCAP1a /PROD=mRNA capping enzyme /DB_XREF=gi:2979495 /UG=Hs.27345 RNA guanylyltransferase and 5-phosphatase /FL=gb:AF025654.1 gb:AB012142.1 gb:AB009022.1 gb:NM_003800.1 AB012142 RNA guanylyltransferase and 5'-phosphatase RNGTT 8732 NM_001286426 /// NM_001286428 /// NM_003800 /// XM_006715589 /// XR_427976 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // inferred from direct assay /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006396 // RNA processing // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0098507 // polynucleotide 5' dephosphorylation // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004484 // mRNA guanylyltransferase activity // inferred from direct assay /// 0004651 // polynucleotide 5'-phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008192 // RNA guanylyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0050355 // triphosphatase activity // inferred from direct assay 6.63 100.24 0.44 0.67 0.73 -4.62
212042_x_at 212042_x_at BG389744 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG389744 /FEA=EST /DB_XREF=gi:13283180 /DB_XREF=est:602415111F1 /CLONE=IMAGE:4523499 /UG=Hs.153 ribosomal protein L7 BG389744 ribosomal protein L7 RPL7 6129 NM_000971 /// XM_006716463 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006364 // rRNA processing // inferred from mutant phenotype /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0042273 // ribosomal large subunit biogenesis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003723 // RNA binding // traceable author statement /// 0003729 // mRNA binding // inferred from direct assay /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 88.95 2146.68 0.44 0.67 0.73 -4.62
217989_at 217989_at NM_016245 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016245.1 /DEF=Homo sapiens retinal short-chain dehydrogenasereductase retSDR2 (LOC51170), mRNA. /FEA=mRNA /GEN=LOC51170 /PROD=retinal short-chain dehydrogenasereductaseretSDR2 /DB_XREF=gi:7705904 /UG=Hs.12150 retinal short-chain dehydrogenasereductase retSDR2 /FL=gb:AF126780.1 gb:NM_016245.1 NM_016245 hydroxysteroid (17-beta) dehydrogenase 11 HSD17B11 51170 NM_016245 /// XM_006714232 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006710 // androgen catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0016229 // steroid dehydrogenase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation -7.28 78.54 -0.44 0.67 0.73 -4.62
216366_x_at 216366_x_at AF047245 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF047245.1 /DEF=Homo sapiens clone bsmneg3-t7 immunoglobulin lambda light chain VJ region, (IGL) mRNA, partial cds. /FEA=mRNA /GEN=IGL /PROD=immunoglobulin lambda light chain /DB_XREF=gi:4566041 /UG=Hs.283876 Homo sapiens clone bsmneg3-t7 immunoglobulin lambda light chain VJ region, (IGL) mRNA, partial cds AF047245 -9.50 117.70 -0.44 0.67 0.73 -4.62
204064_at 204064_at NM_005131 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005131.1 /DEF=Homo sapiens nuclear matrix protein p84 (P84), mRNA. /FEA=mRNA /GEN=P84 /PROD=nuclear matrix protein p84 /DB_XREF=gi:4826881 /UG=Hs.1540 nuclear matrix protein p84 /FL=gb:NM_005131.1 gb:L36529.1 NM_005131 THO complex 1 THOC1 9984 NM_005131 0000018 // regulation of DNA recombination // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from direct assay /// 0006406 // mRNA export from nucleus // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0031297 // replication fork processing // inferred from mutant phenotype /// 0032784 // regulation of DNA-templated transcription, elongation // inferred from direct assay /// 0032786 // positive regulation of DNA-templated transcription, elongation // inferred from mutant phenotype /// 0046784 // viral mRNA export from host cell nucleus // inferred from direct assay /// 0048297 // negative regulation of isotype switching to IgA isotypes // inferred from sequence or structural similarity /// 0051028 // mRNA transport // inferred from electronic annotation /// 2000002 // negative regulation of DNA damage checkpoint // inferred from mutant phenotype 0000346 // transcription export complex // inferred from direct assay /// 0000347 // THO complex // inferred from direct assay /// 0000445 // THO complex part of transcription export complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0045171 // intercellular bridge // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -11.55 141.32 -0.44 0.67 0.73 -4.62
213828_x_at 213828_x_at AA477655 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA477655 /FEA=EST /DB_XREF=gi:2206289 /DB_XREF=est:zu37h09.s1 /CLONE=IMAGE:740225 /UG=Hs.181307 H3 histone, family 3A AA477655 H3 histone, family 3A /// H3 histone, family 3A, pseudogene 4 /// H3 histone, family 3B (H3.3B) H3F3A /// H3F3AP4 /// H3F3B 3020 /// 3021 /// 440926 NM_002107 /// NM_005324 /// NR_002315 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -60.43 2314.76 -0.44 0.67 0.73 -4.62
203198_at 203198_at NM_001261 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001261.1 /DEF=Homo sapiens cyclin-dependent kinase 9 (CDC2-related kinase) (CDK9), mRNA. /FEA=mRNA /GEN=CDK9 /PROD=cyclin-dependent kinase 9 (CDC2-related kinase) /DB_XREF=gi:4502746 /UG=Hs.150423 cyclin-dependent kinase 9 (CDC2-related kinase) /FL=gb:BC001968.1 gb:NM_001261.1 gb:L25676.1 NM_001261 cyclin-dependent kinase 9 CDK9 1025 NM_001261 0006281 // DNA repair // inferred from electronic annotation /// 0006282 // regulation of DNA repair // inferred from direct assay /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0031056 // regulation of histone modification // inferred from direct assay /// 0043111 // replication fork arrest // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement /// 0071157 // negative regulation of cell cycle arrest // inferred from direct assay /// 0071345 // cellular response to cytokine stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008023 // transcription elongation factor complex // traceable author statement /// 0008024 // positive transcription elongation factor complex b // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017069 // snRNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation 9.08 82.59 0.44 0.67 0.73 -4.62
211630_s_at 211630_s_at L42531 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:L42531.1 /DEF=Homo sapiens (clone pGSH1) glutathione synthetase (gsh-s) mRNA, complete cds. /FEA=mRNA /GEN=gsh-s /PROD=glutathione synthetase /DB_XREF=gi:886283 /FL=gb:L42531.1 L42531 glutathione synthetase GSS 2937 NM_000178 /// XM_005260406 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006979 // response to oxidative stress // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0009410 // response to xenobiotic stimulus // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0043200 // response to amino acid // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 1901687 // glutathione derivative biosynthetic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004363 // glutathione synthase activity // traceable author statement /// 0005524 // ATP binding // inferred from direct assay /// 0016594 // glycine binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043295 // glutathione binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 6.57 112.81 0.44 0.67 0.73 -4.62
211445_x_at 211445_x_at AF315951 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF315951.1 /DEF=Homo sapiens FKSG17 (FKSG17) mRNA, complete cds. /FEA=mRNA /GEN=FKSG17 /PROD=FKSG17 /DB_XREF=gi:12276119 /UG=Hs.307057 Homo sapiens FKSG17 (FKSG17) mRNA, complete cds /FL=gb:AF315951.1 AF315951 nascent-polypeptide-associated complex alpha polypeptide pseudogene 1 NACAP1 83955 NM_032031 /// NR_002182 35.53 501.44 0.44 0.67 0.73 -4.62
212203_x_at 212203_x_at BF338947 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF338947 /FEA=EST /DB_XREF=gi:11285367 /DB_XREF=est:602036012F1 /CLONE=IMAGE:4184090 /UG=Hs.182241 interferon induced transmembrane protein 3 (1-8U) BF338947 interferon induced transmembrane protein 3 IFITM3 10410 NM_021034 /// NR_049759 0002376 // immune system process // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0009607 // response to biotic stimulus // inferred from electronic annotation /// 0009615 // response to virus // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0032897 // negative regulation of viral transcription // inferred from direct assay /// 0034341 // response to interferon-gamma // inferred from direct assay /// 0035455 // response to interferon-alpha // inferred from direct assay /// 0035456 // response to interferon-beta // inferred from direct assay /// 0045071 // negative regulation of viral genome replication // inferred from direct assay /// 0045087 // innate immune response // inferred from electronic annotation /// 0046597 // negative regulation of viral entry into host cell // inferred from direct assay /// 0051607 // defense response to virus // inferred from electronic annotation /// 0060337 // type I interferon signaling pathway // traceable author statement 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 43.35 950.62 0.44 0.67 0.73 -4.62
211452_x_at 211452_x_at AF130054 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF130054.1 /DEF=Homo sapiens clone FLB4816 PRO1252 mRNA, complete cds. /FEA=mRNA /PROD=PRO1252 /DB_XREF=gi:11493414 /UG=Hs.326159 leucine rich repeat (in FLII) interacting protein 1 /FL=gb:AF130054.1 AF130054 leucine rich repeat (in FLII) interacting protein 1 LRRFIP1 9208 NM_001137550 /// NM_001137551 /// NM_001137552 /// NM_001137553 /// NM_004735 /// XM_005246112 /// XM_005246113 /// XM_005246114 /// XM_005246115 /// XM_005246116 /// XM_005246117 /// XM_005246118 /// XM_005246119 /// XM_005246120 /// XM_005246121 /// XM_005246122 /// XM_005246123 /// XM_005246124 /// XM_005246125 /// XM_005246126 /// XM_005246127 /// XM_005246128 /// XM_005246129 /// XM_005246130 /// XM_005246131 /// XM_005246132 /// XM_005246133 /// XM_005246134 /// XM_005246135 /// XM_005246136 /// XM_005246137 /// XM_005246138 /// XM_005246139 /// XM_005246140 /// XM_005246141 /// XM_005246142 /// XM_006712840 /// XM_006712841 /// XM_006712842 /// XM_006712843 /// XM_006712844 /// XM_006712845 /// XM_006712846 /// XM_006712847 /// XM_006712848 /// XM_006712849 /// XM_006712850 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay 19.23 451.74 0.44 0.67 0.73 -4.62
201119_s_at 201119_s_at NM_004074 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004074.1 /DEF=Homo sapiens cytochrome c oxidase subunit VIII (COX8), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=COX8 /PROD=cytochrome c oxidase subunit VIII /DB_XREF=gi:4758043 /UG=Hs.81097 cytochrome c oxidase subunit VIII /FL=gb:NM_004074.1 NM_004074 cytochrome c oxidase subunit VIIIA (ubiquitous) COX8A 1351 NM_004074 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation /// 1902600 // hydrogen ion transmembrane transport // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 20.93 1051.94 0.44 0.67 0.73 -4.62
219157_at 219157_at NM_007246 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007246.1 /DEF=Homo sapiens kelch (Drosophila)-like 2 (Mayven) (KLHL2), mRNA. /FEA=mRNA /GEN=KLHL2 /PROD=kelch (Drosophila)-like 2 (Mayven) /DB_XREF=gi:6005702 /UG=Hs.122967 kelch (Drosophila)-like 2 (Mayven) /FL=gb:AF059569.1 gb:NM_007246.1 NM_007246 kelch-like family member 2 KLHL2 11275 NM_001161521 /// NM_001161522 /// NM_007246 /// XM_005262710 /// XM_006714074 0016567 // protein ubiquitination // inferred from sequence or structural similarity 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -6.15 83.60 -0.44 0.67 0.73 -4.62
202305_s_at 202305_s_at AI685892 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI685892 /FEA=EST /DB_XREF=gi:4897186 /DB_XREF=est:tu38a11.x1 /CLONE=IMAGE:2253308 /UG=Hs.103419 fasciculation and elongation protein zeta 2 (zygin II) /FL=gb:AF113124.1 gb:NM_005102.1 AI685892 fasciculation and elongation protein zeta 2 (zygin II) FEZ2 9637 NM_001042548 /// NM_005102 /// XM_006712153 /// XR_244972 0007165 // signal transduction // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0007411 // axon guidance // traceable author statement 0005515 // protein binding // inferred from physical interaction -23.78 207.86 -0.44 0.67 0.74 -4.62
217923_at 217923_at NM_012392 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012392.1 /DEF=Homo sapiens PEF protein with a long N-terminal hydrophobic domain (peflin) (PEF), mRNA. /FEA=mRNA /GEN=PEF /PROD=peflin /DB_XREF=gi:6912581 /UG=Hs.241531 peflin /FL=gb:BC002773.1 gb:AB018357.1 gb:AB026628.1 gb:NM_012392.1 NM_012392 penta-EF-hand domain containing 1 PEF1 553115 NM_012392 /// NR_033686 /// NR_033688 0006508 // proteolysis // not recorded /// 0051592 // response to calcium ion // inferred from physical interaction 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from physical interaction 13.75 304.75 0.44 0.67 0.74 -4.62
203157_s_at 203157_s_at AB020645 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB020645.1 /DEF=Homo sapiens mRNA for KIAA0838 protein, complete cds. /FEA=mRNA /GEN=KIAA0838 /PROD=KIAA0838 protein /DB_XREF=gi:4240164 /UG=Hs.239189 glutaminase /FL=gb:AF327434.1 gb:AB020645.1 gb:AF097493.1 gb:AF223943.1 gb:NM_014905.1 AB020645 glutaminase GLS 2744 NM_001256310 /// NM_014905 /// XM_005246467 /// XM_006712435 /// XM_006712436 /// XR_241306 0001967 // suckling behavior // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // inferred from direct assay /// 0006537 // glutamate biosynthetic process // traceable author statement /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006543 // glutamine catabolic process // inferred from direct assay /// 0006543 // glutamine catabolic process // non-traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0007610 // behavior // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // traceable author statement /// 0014047 // glutamate secretion // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051289 // protein homotetramerization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation 0004359 // glutaminase activity // inferred from direct assay /// 0004359 // glutaminase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 6.12 62.04 0.44 0.68 0.74 -4.62
36994_at 36994_at M62762 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. M62762:Human vacuolar H+ ATPase proton channel subunit mRNA, complete cds /cds=(230,697) /gb=M62762 /gi=189675 /ug=Hs.76159 /len=1162 M62762 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c ATP6V0C 527 NM_001198569 /// NM_001694 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0033572 // transferrin transport // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // traceable author statement /// 0046961 // proton-transporting ATPase activity, rotational mechanism // traceable author statement 18.85 814.08 0.43 0.68 0.74 -4.62
218493_at 218493_at NM_024571 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024571.1 /DEF=Homo sapiens hypothetical protein FLJ22940 (FLJ22940), mRNA. /FEA=mRNA /GEN=FLJ22940 /PROD=hypothetical protein FLJ22940 /DB_XREF=gi:13443017 /UG=Hs.15277 hypothetical protein FLJ22940 /FL=gb:BC001381.1 gb:NM_024571.1 NM_024571 small nuclear ribonucleoprotein 25kDa (U11/U12) SNRNP25 79622 NM_024571 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred by curator 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0045171 // intercellular bridge // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 7.88 159.04 0.43 0.68 0.74 -4.62
218005_at 218005_at AA744771 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA744771 /FEA=EST /DB_XREF=gi:2783535 /DB_XREF=est:ny71d07.s1 /CLONE=IMAGE:1283725 /UG=Hs.108642 zinc finger protein 22 (KOX 15) /FL=gb:NM_006963.1 AA744771 zinc finger protein 22 ZNF22 7570 NM_006963 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0042476 // odontogenesis // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 7.22 357.46 0.43 0.68 0.74 -4.62
212071_s_at 212071_s_at BE968833 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE968833 /FEA=EST /DB_XREF=gi:10579538 /DB_XREF=est:601649861F1 /CLONE=IMAGE:3933782 /UG=Hs.324648 Homo sapiens cDNA FLJ13700 fis, clone PLACE2000216, highly similar to SPECTRIN BETA CHAIN, BRAIN BE968833 spectrin, beta, non-erythrocytic 1 SPTBN1 6711 NM_003128 /// NM_178313 /// XM_005264517 /// XM_005264518 /// XM_006712087 0000281 // mitotic cytokinesis // inferred from mutant phenotype /// 0007009 // plasma membrane organization // inferred from mutant phenotype /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein import into nucleus // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0043001 // Golgi to plasma membrane protein transport // inferred from mutant phenotype /// 0051693 // actin filament capping // inferred from electronic annotation /// 0071709 // membrane assembly // inferred from mutant phenotype /// 0072661 // protein targeting to plasma membrane // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0014731 // spectrin-associated cytoskeleton // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030673 // axolemma // inferred from sequence or structural similarity /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0030506 // ankyrin binding // inferred from physical interaction /// 0030506 // ankyrin binding // non-traceable author statement /// 0032403 // protein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -59.70 1543.58 -0.43 0.68 0.74 -4.62
201730_s_at 201730_s_at BF110993 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF110993 /FEA=EST /DB_XREF=gi:10940683 /DB_XREF=est:7n42e09.x1 /CLONE=IMAGE:3567448 /UG=Hs.169750 translocated promoter region (to activated MET oncogene) /FL=gb:NM_003292.1 BF110993 translocated promoter region, nuclear basket protein TPR 7175 NM_003292 /// XM_005245471 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000189 // MAPK import into nucleus // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0000738 // DNA catabolic process, exonucleolytic // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006308 // DNA catabolic process // inferred from electronic annotation /// 0006404 // RNA import into nucleus // inferred from direct assay /// 0006405 // RNA export from nucleus // inferred from mutant phenotype /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from direct assay /// 0006606 // protein import into nucleus // inferred from mutant phenotype /// 0006611 // protein export from nucleus // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006999 // nuclear pore organization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007094 // mitotic spindle assembly checkpoint // inferred from mutant phenotype /// 0008645 // hexose transport // traceable author statement /// 0010793 // regulation of mRNA export from nucleus // inferred from mutant phenotype /// 0010827 // regulation of glucose transport // traceable author statement /// 0010965 // regulation of mitotic sister chromatid separation // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031453 // positive regulation of heterochromatin assembly // inferred from mutant phenotype /// 0031647 // regulation of protein stability // inferred from mutant phenotype /// 0031990 // mRNA export from nucleus in response to heat stress // inferred from direct assay /// 0034605 // cellular response to heat // inferred from direct assay /// 0035457 // cellular response to interferon-alpha // inferred from sequence or structural similarity /// 0042306 // regulation of protein import into nucleus // inferred from mutant phenotype /// 0042307 // positive regulation of protein import into nucleus // inferred from mutant phenotype /// 0043578 // nuclear matrix organization // inferred from mutant phenotype /// 0044281 // small molecule metabolic process // traceable author statement /// 0045947 // negative regulation of translational initiation // inferred from mutant phenotype /// 0046825 // regulation of protein export from nucleus // inferred from mutant phenotype /// 0046827 // positive regulation of protein export from nucleus // inferred from sequence or structural similarity /// 0046832 // negative regulation of RNA export from nucleus // inferred from direct assay /// 0046832 // negative regulation of RNA export from nucleus // inferred from mutant phenotype /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051292 // nuclear pore complex assembly // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0070849 // response to epidermal growth factor // inferred from direct assay /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // inferred from mutant phenotype /// 0090316 // positive regulation of intracellular protein transport // inferred from mutant phenotype /// 1901673 // regulation of spindle assembly involved in mitosis // inferred from mutant phenotype 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0009318 // exodeoxyribonuclease VII complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0034399 // nuclear periphery // inferred from direct assay /// 0042405 // nuclear inclusion body // inferred from direct assay /// 0044615 // nuclear pore nuclear basket // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay /// 0004828 // serine-tRNA ligase activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from mutant phenotype /// 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008855 // exodeoxyribonuclease VII activity // inferred from electronic annotation /// 0015631 // tubulin binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043495 // protein anchor // inferred from mutant phenotype /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051019 // mitogen-activated protein kinase binding // inferred from direct assay /// 0070840 // dynein complex binding // inferred from direct assay 13.30 334.38 0.43 0.68 0.74 -4.62
212591_at 212591_at AA887480 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA887480 /FEA=EST /DB_XREF=gi:3003168 /DB_XREF=est:oj54a12.s1 /CLONE=IMAGE:1502110 /UG=Hs.17428 RBP1-like protein AA887480 AT rich interactive domain 4B (RBP1-like) /// RNA binding motif protein 34 ARID4B /// RBM34 23029 /// 51742 NM_001161533 /// NM_001206794 /// NM_015014 /// NM_016374 /// NM_031371 /// NR_027762 /// XM_005273160 /// XM_006711781 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0034773 // histone H4-K20 trimethylation // inferred from electronic annotation /// 0036124 // histone H3-K9 trimethylation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 7.62 148.91 0.43 0.68 0.74 -4.62
35201_at 35201_at X16135 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. X16135:Human mRNA for novel heterogeneous nuclear RNP protein, L protein /cds=(28,1704) /gb=X16135 /gi=32355 /ug=Hs.2730 /len=2033 X16135 heterogeneous nuclear ribonucleoprotein L HNRNPL 3191 NM_001005335 /// NM_001533 /// XR_243927 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 18.55 219.70 0.43 0.68 0.74 -4.62
205392_s_at 205392_s_at NM_004166 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004166.1 /DEF=Homo sapiens small inducible cytokine subfamily A (Cys-Cys), member 14 (SCYA14), mRNA. /FEA=mRNA /GEN=SCYA14 /PROD=small inducible cytokine subfamily A (Cys-Cys),member 14 /DB_XREF=gi:4759069 /UG=Hs.20144 small inducible cytokine subfamily A (Cys-Cys), member 14 /FL=gb:NM_004166.1 NM_004166 chemokine (C-C motif) ligand 14 /// CCL15-CCL14 readthrough (NMD candidate) CCL14 /// CCL15-CCL14 6358 /// 348249 NM_004166 /// NM_032962 /// NM_032963 /// NR_027921 /// NR_027922 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0050918 // positive chemotaxis // inferred from direct assay /// 0060326 // cell chemotaxis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0042056 // chemoattractant activity // inferred from direct assay 9.63 158.61 0.43 0.68 0.74 -4.62
201499_s_at 201499_s_at NM_003470 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003470.1 /DEF=Homo sapiens ubiquitin specific protease 7 (herpes virus-associated) (USP7), mRNA. /FEA=mRNA /GEN=USP7 /PROD=ubiquitin specific protease 7 (herpesvirus-associated) /DB_XREF=gi:4507856 /UG=Hs.78683 ubiquitin specific protease 7 (herpes virus-associated) /FL=gb:NM_003470.1 NM_003470 ubiquitin specific peptidase 7 (herpes virus-associated) USP7 7874 NM_001286457 /// NM_001286458 /// NM_003470 0006281 // DNA repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010216 // maintenance of DNA methylation // inferred from mutant phenotype /// 0016032 // viral process // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // inferred from mutant phenotype /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051090 // regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation 0002039 // p53 binding // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // inferred from mutant phenotype /// 0004221 // ubiquitin thiolesterase activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0036459 // ubiquitinyl hydrolase activity // inferred from electronic annotation 12.08 640.64 0.43 0.68 0.74 -4.62
211714_x_at 211714_x_at BC005838 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005838.1 /DEF=Homo sapiens, tubulin, beta 5, clone MGC:2440, mRNA, complete cds. /FEA=mRNA /PROD=tubulin, beta 5 /DB_XREF=gi:13543349 /FL=gb:BC005838.1 BC005838 tubulin, beta class I TUBB 203068 NM_001293212 /// NM_001293213 /// NM_001293214 /// NM_001293215 /// NM_001293216 /// NM_178014 /// NR_120608 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0009987 // cellular process // inferred from direct assay /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0042267 // natural killer cell mediated cytotoxicity // non-traceable author statement /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051297 // centrosome organization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement 0000242 // pericentriolar material // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0044297 // cell body // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032794 // GTPase activating protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from direct assay -108.57 3052.94 -0.43 0.68 0.74 -4.62
211940_x_at 211940_x_at BE869922 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE869922 /FEA=EST /DB_XREF=gi:10318698 /DB_XREF=est:601446568F1 /CLONE=IMAGE:3850432 /UG=Hs.181307 H3 histone, family 3A BE869922 H3 histone, family 3A /// H3 histone, family 3A, pseudogene 4 /// H3 histone, family 3B (H3.3B) H3F3A /// H3F3AP4 /// H3F3B 3020 /// 3021 /// 440926 NM_002107 /// NM_005324 /// NR_002315 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006336 // DNA replication-independent nucleosome assembly // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031492 // nucleosomal DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -67.18 2051.96 -0.43 0.68 0.74 -4.62
201172_x_at 201172_x_at NM_003945 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003945.1 /DEF=Homo sapiens ATPase, H+ transporting, lysosomal (vacuolar proton pump) 9kD (ATP6H), mRNA. /FEA=mRNA /GEN=ATP6H /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) 9kD /DB_XREF=gi:4502318 /UG=Hs.24322 ATPase, H+ transporting, lysosomal (vacuolar proton pump) 9kD /FL=gb:NM_003945.1 NM_003945 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 ATP6V0E1 8992 NM_003945 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0007035 // vacuolar acidification // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0016049 // cell growth // inferred from genetic interaction /// 0033572 // transferrin transport // traceable author statement /// 0043200 // response to amino acid // inferred from electronic annotation /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042625 // ATPase activity, coupled to transmembrane movement of ions // inferred from sequence or structural similarity /// 0046961 // proton-transporting ATPase activity, rotational mechanism // traceable author statement -20.83 1049.29 -0.43 0.68 0.74 -4.62
212009_s_at 212009_s_at AL553320 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL553320 /FEA=EST /DB_XREF=gi:12893045 /DB_XREF=est:AL553320 /CLONE=CS0DI075YG04 (5 prime) /UG=Hs.75612 stress-induced-phosphoprotein 1 (Hsp70Hsp90-organizing protein) AL553320 stress-induced phosphoprotein 1 STIP1 10963 NM_001282652 /// NM_001282653 /// NM_006819 0006950 // response to stress // traceable author statement 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from electronic annotation 8.70 164.57 0.42 0.68 0.74 -4.62
214938_x_at 214938_x_at AF283771 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AF283771.2 /DEF=Homo sapiens clone TCBAP0774 mRNA sequence. /FEA=mRNA /DB_XREF=gi:10281740 /UG=Hs.274472 high-mobility group (nonhistone chromosomal) protein 1 AF283771 high mobility group box 1 HMGB1 3146 NM_002128 /// XM_005266363 /// XM_005266365 /// XM_005266368 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001773 // myeloid dendritic cell activation // inferred from sequence or structural similarity /// 0002407 // dendritic cell chemotaxis // inferred from sequence or structural similarity /// 0002437 // inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006265 // DNA topological change // inferred from sequence or structural similarity /// 0006288 // base-excision repair, DNA ligation // inferred from direct assay /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006310 // DNA recombination // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from direct assay /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0033151 // V(D)J recombination // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from sequence or structural similarity /// 0051103 // DNA ligation involved in DNA repair // inferred from sequence or structural similarity /// 2000426 // negative regulation of apoptotic cell clearance // inferred from electronic annotation 0000793 // condensed chromosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from sequence or structural similarity /// 0003690 // double-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008301 // DNA binding, bending // inferred from mutant phenotype /// 0008301 // DNA binding, bending // inferred from sequence or structural similarity /// 0042056 // chemoattractant activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050786 // RAGE receptor binding // inferred from sequence or structural similarity /// 0070491 // repressing transcription factor binding // inferred from physical interaction -54.88 2955.54 -0.42 0.68 0.74 -4.62
210830_s_at 210830_s_at AF001602 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF001602.1 /DEF=Homo sapiens paraoxonase (PON2) mRNA, with alternatively spliced exon 3, complete cds. /FEA=mRNA /GEN=PON2 /PROD=paraoxonase /DB_XREF=gi:2228776 /UG=Hs.169857 paraoxonase 2 /FL=gb:AF001602.1 AF001602 paraoxonase 2 PON2 5445 NM_000305 /// NM_001018161 /// XM_005250453 /// XM_005250454 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019439 // aromatic compound catabolic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004064 // arylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 10.30 351.93 0.42 0.68 0.74 -4.62
201103_x_at 201103_x_at BE299495 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE299495 /FEA=EST /DB_XREF=gi:9183243 /DB_XREF=est:600944774T1 /CLONE=IMAGE:2960610 /UG=Hs.218329 hypothetical protein /FL=gb:NM_015383.1 BE299495 neuroblastoma breakpoint family, member 10 /// neuroblastoma breakpoint family, member 11 /// neuroblastoma breakpoint family, member 12 /// neuroblastoma breakpoint family, member 14 /// neuroblastoma breakpoint family, member 15 /// neuroblastoma breakpoint family, member 20 /// neuroblastoma breakpoint family, member 8 /// neuroblastoma breakpoint family, member 9 NBPF10 /// NBPF11 /// NBPF12 /// NBPF14 /// NBPF15 /// NBPF20 /// NBPF8 /// NBPF9 25832 /// 149013 /// 200030 /// 284565 /// 400818 /// 728841 /// 100132406 /// 100288142 NM_001037501 /// NM_001037675 /// NM_001039703 /// NM_001101663 /// NM_001102663 /// NM_001170755 /// NM_001277444 /// NM_001278141 /// NM_001278267 /// NM_015383 /// NM_173638 /// NM_183372 /// NR_046188 /// NR_102404 /// NR_102405 /// NR_110864 /// XM_005245096 /// XM_005245097 /// XM_005277342 /// XM_005277343 /// XM_005277344 /// XM_005277345 /// XM_005277346 /// XM_005277347 /// XM_006710872 /// XM_006711103 /// XM_006711104 /// XM_006711179 /// XM_006711180 /// XM_006711181 /// XM_006711182 /// XM_006711197 /// XM_006711265 /// XM_006711317 /// XR_254328 /// XR_426769 0005737 // cytoplasm // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay -40.15 840.02 -0.42 0.68 0.74 -4.62
217713_x_at 217713_x_at AA126763 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA126763 /FEA=EST /DB_XREF=gi:1686263 /DB_XREF=est:zn87b11.s1 /CLONE=IMAGE:565149 /UG=Hs.182296 ESTs, Weakly similar to ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE CONTAMINATION WARNING ENTRY H.sapiens AA126763 -5.88 77.41 -0.42 0.69 0.74 -4.62
205711_x_at 205711_x_at NM_005174 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005174.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (ATP5C1), mRNA. /FEA=mRNA /GEN=ATP5C1 /PROD=ATP synthase, H+ transporting, mitochondrial F1complex, gamma polypeptide 1 /DB_XREF=gi:4885078 /UG=Hs.155433 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 /FL=gb:D16563.1 gb:NM_005174.1 NM_005174 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 ATP5C1 509 NM_001001973 /// NM_005174 0006119 // oxidative phosphorylation // non-traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // non-traceable author statement /// 0006754 // ATP biosynthetic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // non-traceable author statement /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // non-traceable author statement /// 0022857 // transmembrane transporter activity // inferred by curator /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation -23.88 996.24 -0.42 0.69 0.74 -4.62
204468_s_at 204468_s_at NM_005424 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005424.1 /DEF=Homo sapiens tyrosine kinase with immunoglobulin and epidermal growth factor homology domains (TIE), mRNA. /FEA=mRNA /GEN=TIE /PROD=tyrosine kinase with immunoglobulin andepidermal growth factor homology domains /DB_XREF=gi:4885630 /UG=Hs.78824 tyrosine kinase with immunoglobulin and epidermal growth factor homology domains /FL=gb:NM_005424.1 NM_005424 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 TIE1 7075 NM_001253357 /// NM_005424 /// XM_005271163 /// XM_005271164 /// XM_006710869 0001525 // angiogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007498 // mesoderm development // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0045026 // plasma membrane fusion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -20.52 889.69 -0.42 0.69 0.75 -4.62
201264_at 201264_at NM_007263 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007263.1 /DEF=Homo sapiens coatomer protein complex, subunit epsilon (COPE), mRNA. /FEA=mRNA /GEN=COPE /PROD=coatomer protein complex, subunit epsilon /DB_XREF=gi:6005734 /UG=Hs.10326 coatomer protein complex, subunit epsilon /FL=gb:AL136928.1 gb:BC003155.1 gb:NM_007263.1 NM_007263 coatomer protein complex, subunit epsilon COPE 11316 NM_007263 /// NM_199442 /// NM_199444 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 15.62 369.94 0.42 0.69 0.75 -4.62
222146_s_at 222146_s_at AK026674 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026674.1 /DEF=Homo sapiens cDNA: FLJ23021 fis, clone LNG01014, highly similar to HUMSEF21B Human SEF2-1B protein (SEF2-1B) mRNA. /FEA=mRNA /DB_XREF=gi:10439577 /UG=Hs.326198 transcription factor 4 AK026674 transcription factor 4 TCF4 6925 NM_001083962 /// NM_001243226 /// NM_001243227 /// NM_001243228 /// NM_001243230 /// NM_001243231 /// NM_001243232 /// NM_001243233 /// NM_001243234 /// NM_001243235 /// NM_001243236 /// NM_003199 /// XM_005266739 /// XM_005266741 /// XM_005266743 /// XM_005266744 /// XM_005266745 /// XM_005266746 /// XM_005266747 /// XM_005266749 /// XM_005266750 /// XM_005266752 /// XM_005266754 /// XM_005266755 /// XM_005266761 /// XM_006722529 /// XM_006722530 /// XM_006722531 /// XM_006722532 /// XM_006722533 /// XM_006722534 /// XM_006722535 /// XM_006722536 /// XM_006722537 /// XM_006722538 /// XM_006722539 /// XM_006722540 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0065004 // protein-DNA complex assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001011 // sequence-specific DNA binding RNA polymerase recruiting transcription factor activity // inferred from sequence or structural similarity /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from sequence or structural similarity /// 0001087 // TFIIB-class binding transcription factor activity // inferred from sequence or structural similarity /// 0001093 // TFIIB-class transcription factor binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity -16.70 209.90 -0.42 0.69 0.75 -4.62
201476_s_at 201476_s_at AI692974 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI692974 /FEA=EST /DB_XREF=gi:4970314 /DB_XREF=est:wd36e03.x1 /CLONE=IMAGE:2330236 /UG=Hs.2934 ribonucleotide reductase M1 polypeptide /FL=gb:NM_001033.1 AI692974 ribonucleotide reductase M1 RRM1 6240 NM_001033 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0006206 // pyrimidine nucleobase metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009263 // deoxyribonucleotide biosynthetic process // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051290 // protein heterotetramerization // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation 0005635 // nuclear envelope // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005971 // ribonucleoside-diphosphate reductase complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004748 // ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from electronic annotation -12.07 157.64 -0.42 0.69 0.75 -4.62
218256_s_at 218256_s_at NM_017426 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017426.1 /DEF=Homo sapiens nucleoporin p54 (NUP54), mRNA. /FEA=mRNA /GEN=NUP54 /PROD=nucleoporin p54 /DB_XREF=gi:8393857 /UG=Hs.9082 nucleoporin p54 /FL=gb:AF157322.1 gb:NM_017426.1 NM_017426 nucleoporin 54kDa NUP54 53371 NM_001278603 /// NM_017426 /// NR_103780 /// NR_103781 /// NR_103782 /// XM_006714236 /// XM_006714237 /// XM_006714238 0000278 // mitotic cell cycle // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006605 // protein targeting // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0008645 // hexose transport // traceable author statement /// 0010827 // regulation of glucose transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005487 // nucleocytoplasmic transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 15.05 214.95 0.42 0.69 0.75 -4.62
217971_at 217971_at NM_021970 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021970.1 /DEF=Homo sapiens MEK partner 1 (MP1), mRNA. /FEA=mRNA /GEN=MP1 /PROD=MEK partner 1 /DB_XREF=gi:11496276 /UG=Hs.6361 MEK partner 1 /FL=gb:AF130115.1 gb:NM_021970.1 gb:AF201947.1 NM_021970 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 LAMTOR3 8649 NM_001243736 /// NM_021970 /// NR_024170 0016310 // phosphorylation // inferred from electronic annotation /// 0032006 // regulation of TOR signaling // inferred from electronic annotation /// 0032008 // positive regulation of TOR signaling // inferred from mutant phenotype /// 0034613 // cellular protein localization // inferred from mutant phenotype /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0071230 // cellular response to amino acid stimulus // inferred from mutant phenotype 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071986 // Ragulator complex // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from direct assay -12.72 181.34 -0.41 0.69 0.75 -4.62
217882_at 217882_at NM_018447 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018447.1 /DEF=Homo sapiens 30 kDa protein (LOC55831), mRNA. /FEA=mRNA /GEN=LOC55831 /PROD=30 kDa protein /DB_XREF=gi:8923856 /UG=Hs.283714 30 kDa protein /FL=gb:AF157321.1 gb:NM_018447.1 NM_018447 ER membrane protein complex subunit 3 EMC3 55831 NM_018447 /// XM_005265321 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0072546 // ER membrane protein complex // inferred from direct assay -10.13 287.21 -0.41 0.69 0.75 -4.62
38707_r_at 38707_r_at S75174 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. S75174:E2F-4=transcription factor [human, Nalm6 and HeLa cells, mRNA, 1539 nt] /cds=(54,1304) /gb=S75174 /gi=802120 /ug=Hs.108371 /len=1539 S75174 E2F transcription factor 4, p107/p130-binding E2F4 1874 NM_001950 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0002064 // epithelial cell development // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006884 // cell volume homeostasis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0008015 // blood circulation // inferred from electronic annotation /// 0008361 // regulation of cell size // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction -13.75 521.33 -0.41 0.69 0.75 -4.62
205361_s_at 205361_s_at AI718295 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI718295 /FEA=EST /DB_XREF=gi:5035551 /DB_XREF=est:as51g04.x1 /CLONE=IMAGE:2320758 /UG=Hs.91161 prefoldin 4 /FL=gb:NM_002623.2 gb:U41816.1 AI718295 prefoldin subunit 4 PFDN4 5203 NM_002623 0006457 // protein folding // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // non-traceable author statement /// 0016272 // prefoldin complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // traceable author statement 8.43 218.34 0.41 0.69 0.75 -4.62
203514_at 203514_at BF971923 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF971923 /FEA=EST /DB_XREF=gi:12339138 /DB_XREF=est:602240326F1 /CLONE=IMAGE:4328791 /UG=Hs.29282 mitogen-activated protein kinase kinase kinase 3 /FL=gb:U78876.1 gb:NM_002401.1 BF971923 mitogen-activated protein kinase kinase kinase 3 MAP3K3 4215 NM_002401 /// NM_203351 /// XM_005257376 /// XM_005257377 /// XM_005257378 /// XM_006721909 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from expression pattern /// 0046777 // protein autophosphorylation // inferred from direct assay 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -8.43 175.91 -0.41 0.69 0.75 -4.62
201063_at 201063_at NM_002901 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002901.1 /DEF=Homo sapiens reticulocalbin 1, EF-hand calcium binding domain (RCN1), mRNA. /FEA=mRNA /GEN=RCN1 /PROD=reticulocalbin 1 precursor /DB_XREF=gi:4506454 /UG=Hs.167791 reticulocalbin 1, EF-hand calcium binding domain /FL=gb:D42073.1 gb:NM_002901.1 NM_002901 reticulocalbin 1, EF-hand calcium binding domain RCN1 5954 NM_002901 0001701 // in utero embryonic development // inferred from electronic annotation /// 0043010 // camera-type eye development // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 15.65 715.98 0.41 0.69 0.75 -4.62
214784_x_at 214784_x_at BE966299 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE966299 /FEA=EST /DB_XREF=gi:11771566 /DB_XREF=est:601660539R1 /CLONE=IMAGE:3906248 /UG=Hs.70500 KIAA0370 protein BE966299 exportin 6 XPO6 23214 NM_001270940 /// NM_015171 /// XM_005255195 /// XM_005255197 /// XM_005255198 /// XM_005255199 /// XM_005255200 0006611 // protein export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred by curator /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from direct assay -11.68 273.29 -0.41 0.69 0.75 -4.62
201244_s_at 201244_s_at NM_002880 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002880.1 /DEF=Homo sapiens v-raf-1 murine leukemia viral oncogene homolog 1 (RAF1), mRNA. /FEA=mRNA /GEN=RAF1 /PROD=v-raf-1 murine leukemia viral oncogene homolog1 /DB_XREF=gi:4506400 /UG=Hs.85181 v-raf-1 murine leukemia viral oncogene homolog 1 /FL=gb:NM_002880.1 NM_002880 Raf-1 proto-oncogene, serine/threonine kinase RAF1 5894 NM_002880 /// XM_005265355 /// XM_005265357 /// XM_005265358 /// XM_005265359 /// XM_005265360 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0031333 // negative regulation of protein complex assembly // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0034220 // ion transmembrane transport // traceable author statement /// 0035023 // regulation of Rho protein signal transduction // traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0042060 // wound healing // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045104 // intermediate filament cytoskeleton organization // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0071550 // death-inducing signaling complex assembly // inferred from electronic annotation /// 1902042 // negative regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from electronic annotation /// 2000145 // regulation of cell motility // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from physical interaction /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031143 // pseudopodium // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0017016 // Ras GTPase binding // inferred from electronic annotation /// 0031267 // small GTPase binding // inferred from physical interaction /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation -8.52 280.71 -0.41 0.70 0.75 -4.62
212647_at 212647_at NM_006270 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_006270.1 /DEF=Homo sapiens related RAS viral (r-ras) oncogene homolog (RRAS), mRNA. /FEA=CDS /GEN=RRAS /PROD=related RAS viral (r-ras) oncogene homolog /DB_XREF=gi:5454027 /UG=Hs.9651 related RAS viral (r-ras) oncogene homolog /FL=gb:NM_006270.1 NM_006270 related RAS viral (r-ras) oncogene homolog RRAS 6237 NM_006270 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay -6.95 226.57 -0.41 0.70 0.75 -4.62
201606_s_at 201606_s_at BE796924 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE796924 /FEA=EST /DB_XREF=gi:10218031 /DB_XREF=est:601587284F1 /CLONE=IMAGE:3941445 /UG=Hs.172589 nuclear phosphoprotein similar to S. cerevisiae PWP1 /FL=gb:BC001652.1 gb:L07758.1 gb:NM_007062.1 BE796924 PWP1 homolog (S. cerevisiae) PWP1 11137 NM_007062 0006351 // transcription, DNA-templated // traceable author statement 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 14.12 473.14 0.40 0.70 0.76 -4.62
213905_x_at 213905_x_at AA845258 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA845258 /FEA=EST /DB_XREF=gi:2931709 /DB_XREF=est:ak84a11.s1 /CLONE=IMAGE:1414556 /UG=Hs.821 biglycan AA845258 biglycan BGN 633 NM_001711 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0030207 // chondroitin sulfate catabolic process // traceable author statement /// 0030208 // dermatan sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005796 // Golgi lumen // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0030133 // transport vesicle // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation -14.53 450.21 -0.40 0.70 0.76 -4.62
214494_s_at 214494_s_at NM_005200 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005200.1 /DEF=Homo sapiens cell matrix adhesion regulator (CMAR), mRNA. /FEA=CDS /GEN=CMAR /PROD=cell matrix adhesion regulator /DB_XREF=gi:4885142 /UG=Hs.272480 cell matrix adhesion regulator /FL=gb:NM_005200.1 NM_005200 uncharacterized LOC101930112 /// spastic paraplegia 7 (pure and complicated autosomal recessive) LOC101930112 /// SPG7 6687 /// 101930112 NM_003119 /// NM_199367 /// XM_005256321 /// XM_006721264 /// XM_006721265 /// XM_006721266 /// XR_253599 0006508 // proteolysis // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0008089 // anterograde axon cargo transport // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // non-traceable author statement /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // traceable author statement 8.68 167.31 0.40 0.70 0.76 -4.62
200604_s_at 200604_s_at M18468 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M18468.1 /DEF=Human cAMP-dependent protein kinase regulatory subunit type I (PRKAR1A) mRNA, complete cds. /FEA=mRNA /GEN=PRKAR1A /PROD=cAMP-dependent protein kinase regulatory subunittype 1 /DB_XREF=gi:1526988 /UG=Hs.183037 protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) /FL=gb:M18468.1 gb:M33336.1 gb:NM_002734.1 M18468 protein kinase, cAMP-dependent, regulatory, type I, alpha PRKAR1A 5573 NM_001276289 /// NM_001276290 /// NM_001278433 /// NM_002734 /// NM_212471 /// NM_212472 0001707 // mesoderm formation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007143 // female meiotic division // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045835 // negative regulation of meiosis // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 2000480 // negative regulation of cAMP-dependent protein kinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from direct assay /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction 17.25 287.72 0.40 0.70 0.76 -4.62
202501_at 202501_at NM_014268 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014268.1 /DEF=Homo sapiens microtubule-associated protein, RPEB family, member 2 (MAPRE2), mRNA. /FEA=mRNA /GEN=MAPRE2 /PROD=microtubule-associated protein, RPEB family,member 2 /DB_XREF=gi:10346134 /UG=Hs.78335 microtubule-associated protein, RPEB family, member 2 /FL=gb:NM_014268.1 NM_014268 microtubule-associated protein, RP/EB family, member 2 MAPRE2 10982 NM_001143826 /// NM_001143827 /// NM_001256420 /// NM_014268 /// NR_046177 /// XM_006722375 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation -11.10 661.88 -0.40 0.70 0.76 -4.62
210766_s_at 210766_s_at AF053640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF053640.1 /DEF=Homo sapiens trachea cellular apoptosis susceptibility protein (CSE1) mRNA, complete cds. /FEA=mRNA /GEN=CSE1 /PROD=cellular apoptosis susceptibility protein /DB_XREF=gi:3560554 /UG=Hs.90073 chromosome segregation 1 (yeast homolog)-like /FL=gb:AF053640.1 AF053640 CSE1 chromosome segregation 1-like (yeast) CSE1L 1434 NM_001256135 /// NM_001316 /// NM_177436 /// NR_045796 0006611 // protein export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008262 // importin-alpha export receptor activity // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation 9.00 222.25 0.40 0.70 0.76 -4.62
217826_s_at 217826_s_at NM_016021 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016021.1 /DEF=Homo sapiens CGI-76 protein (LOC51632), mRNA. /FEA=mRNA /GEN=LOC51632 /PROD=CGI-76 protein /DB_XREF=gi:7706311 /UG=Hs.184325 CGI-76 protein /FL=gb:AF151834.1 gb:AF161502.1 gb:AF151039.1 gb:NM_016021.1 NM_016021 ubiquitin-conjugating enzyme E2, J1 UBE2J1 51465 NM_016021 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -13.18 297.11 -0.40 0.70 0.76 -4.62
202397_at 202397_at NM_005796 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005796.1 /DEF=Homo sapiens nuclear transport factor 2 (placental protein 15) (PP15), mRNA. /FEA=mRNA /GEN=PP15 /PROD=nuclear transport factor 2 (placental protein15) /DB_XREF=gi:5031984 /UG=Hs.151734 nuclear transport factor 2 (placental protein 15) /FL=gb:U43939.1 gb:BC002348.1 gb:NM_005796.1 NM_005796 nuclear transport factor 2 /// nuclear transport factor 2 pseudogene 4 NUTF2 /// NUTF2P4 10204 /// 128322 NM_005796 /// XM_003960108 /// XM_005255771 /// XM_060943 0006611 // protein export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction -10.20 361.48 -0.40 0.70 0.76 -4.62
209306_s_at 209306_s_at AI139569 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI139569 /FEA=EST /DB_XREF=gi:3645541 /DB_XREF=est:qc57a12.x1 /CLONE=IMAGE:1713694 /UG=Hs.153026 SWAP-70 protein /FL=gb:BC000616.1 gb:AF210818.1 AI139569 SWAP switching B-cell complex 70kDa subunit SWAP70 23075 NM_015055 /// XM_005252829 /// XM_005252830 0016444 // somatic cell DNA recombination // inferred from electronic annotation /// 0045190 // isotype switching // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation 15.43 480.49 0.40 0.70 0.76 -4.62
208679_s_at 208679_s_at AF279893 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF279893.1 /DEF=Homo sapiens PNAS-139 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-139 /DB_XREF=gi:12751114 /UG=Hs.83583 actin related protein 23 complex, subunit 2 (34 kD) /FL=gb:BC000590.1 gb:AF279893.1 AF279893 actin related protein 2/3 complex, subunit 2, 34kDa ARPC2 10109 NM_005731 /// NM_152862 /// XM_006712173 0006928 // cellular component movement // traceable author statement /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019894 // kinesin binding // inferred from electronic annotation /// 0035650 // AP-1 adaptor complex binding // inferred from electronic annotation /// 0071933 // Arp2/3 complex binding // inferred from electronic annotation 36.15 1581.65 0.40 0.70 0.76 -4.62
219356_s_at 219356_s_at NM_016410 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016410.1 /DEF=Homo sapiens hypothetical protein (HSPC177), mRNA. /FEA=mRNA /GEN=HSPC177 /PROD=hypothetical protein /DB_XREF=gi:7705488 /UG=Hs.279777 hypothetical protein /FL=gb:AF161525.1 gb:NM_016410.1 NM_016410 charged multivesicular body protein 5 CHMP5 51510 NM_001195536 /// NM_016410 0001919 // regulation of receptor recycling // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -14.95 199.30 -0.40 0.70 0.76 -4.62
218488_at 218488_at NM_020365 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_020365.1 /DEF=Homo sapiens eukaryotic translation initiation factor 2B, subunit 3 (gamma, 58kD) (EIF2B3), mRNA. /FEA=mRNA /GEN=EIF2B3 /PROD=eukaryotic translation initiation factor 2B,subunit 3 (gamma, 58kD) /DB_XREF=gi:9966778 /UG=Hs.283627 eukaryotic translation initiation factor 2B, subunit 3 (gamma, 58kD) /FL=gb:AF257077.1 gb:NM_020365.1 NM_020365 eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa EIF2B3 8891 NM_001166588 /// NM_001261418 /// NM_020365 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009408 // response to heat // traceable author statement /// 0009749 // response to glucose // inferred from sequence or structural similarity /// 0010467 // gene expression // traceable author statement /// 0014003 // oligodendrocyte development // inferred from mutant phenotype /// 0032057 // negative regulation of translational initiation in response to stress // inferred from sequence or structural similarity /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from mutant phenotype /// 0043434 // response to peptide hormone // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051716 // cellular response to stimulus // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay 0003743 // translation initiation factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008135 // translation factor activity, nucleic acid binding // inferred from direct assay /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 9.02 198.54 0.39 0.71 0.76 -4.62
210774_s_at 210774_s_at AL162047 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AL162047.1 /DEF=Homo sapiens mRNA; cDNA DKFZp762E1112 (from clone DKFZp762E1112); complete cds. /FEA=mRNA /GEN=DKFZp762E1112 /PROD=hypothetical protein /DB_XREF=gi:7328089 /UG=Hs.99908 nuclear receptor coactivator 4 /FL=gb:AL162047.1 AL162047 nuclear receptor coactivator 4 NCOA4 8031 NM_001145260 /// NM_001145261 /// NM_001145262 /// NM_001145263 /// NM_005437 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008584 // male gonad development // traceable author statement /// 0009725 // response to hormone // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement 0005634 // nucleus // traceable author statement 0003713 // transcription coactivator activity // non-traceable author statement /// 0050681 // androgen receptor binding // non-traceable author statement 16.20 935.02 0.39 0.71 0.76 -4.62
214512_s_at 214512_s_at NM_006713 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_006713.1 /DEF=Homo sapiens activated RNA polymerase II transcription cofactor 4 (PC4), mRNA. /FEA=CDS /GEN=PC4 /PROD=activated RNA polymerase II transcriptioncofactor 4 /DB_XREF=gi:5729967 /UG=Hs.74861 activated RNA polymerase II transcription cofactor 4 /FL=gb:U12979.1 gb:NM_006713.1 NM_006713 SUB1 homolog (S. cerevisiae) SUB1 10923 NM_006713 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 25.68 459.66 0.39 0.71 0.76 -4.62
208678_at 208678_at BC004443 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004443.1 /DEF=Homo sapiens, ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD, clone MGC:4040, mRNA, complete cds. /FEA=mRNA /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) 31kD /DB_XREF=gi:13325247 /UG=Hs.77805 ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD /FL=gb:BC004443.1 gb:NM_001696.1 BC004443 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 ATP6V1E1 529 NM_001039366 /// NM_001039367 /// NM_001696 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0033572 // transferrin transport // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005902 // microvillus // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016469 // proton-transporting two-sector ATPase complex // traceable author statement /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from physical interaction -7.75 290.80 -0.39 0.71 0.76 -4.62
209563_x_at 209563_x_at BC000454 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000454.1 /DEF=Homo sapiens, calmodulin 2 (phosphorylase kinase, delta), clone MGC:8460, mRNA, complete cds. /FEA=mRNA /PROD=calmodulin 2 (phosphorylase kinase, delta) /DB_XREF=gi:12653368 /UG=Hs.182278 calmodulin 2 (phosphorylase kinase, delta) /FL=gb:BC000454.1 BC000454 calmodulin 1 (phosphorylase kinase, delta) /// calmodulin 2 (phosphorylase kinase, delta) /// calmodulin 3 (phosphorylase kinase, delta) CALM1 /// CALM2 /// CALM3 801 /// 805 /// 808 NM_001166106 /// NM_001743 /// NM_005184 /// NM_006888 /// XM_006720258 0001975 // response to amphetamine // inferred from electronic annotation /// 0002027 // regulation of heart rate // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0005513 // detection of calcium ion // inferred from mutant phenotype /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005980 // glycogen catabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006936 // muscle contraction // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007603 // phototransduction, visible light // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0016056 // rhodopsin mediated signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022400 // regulation of rhodopsin mediated signaling pathway // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030801 // positive regulation of cyclic nucleotide metabolic process // inferred from direct assay /// 0032465 // regulation of cytokinesis // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from direct assay /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0046209 // nitric oxide metabolic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0051412 // response to corticosterone // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 1901841 // regulation of high voltage-gated calcium channel activity // inferred from electronic annotation /// 1901844 // regulation of cell communication by electrical coupling involved in cardiac conduction // inferred by curator 0000922 // spindle pole // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0030017 // sarcomere // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0031432 // titin binding // inferred from physical interaction /// 0031800 // type 3 metabotropic glutamate receptor binding // inferred from electronic annotation /// 0031996 // thioesterase binding // inferred from physical interaction /// 0031997 // N-terminal myristoylation domain binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043548 // phosphatidylinositol 3-kinase binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0072542 // protein phosphatase activator activity // inferred from direct assay 44.53 1368.71 0.39 0.71 0.76 -4.62
201533_at 201533_at NM_001904 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001904.1 /DEF=Homo sapiens catenin (cadherin-associated protein), beta 1 (88kD) (CTNNB1), mRNA. /FEA=mRNA /GEN=CTNNB1 /PROD=catenin (cadherin-associated protein), beta 1(88kD) /DB_XREF=gi:4503130 /UG=Hs.171271 catenin (cadherin-associated protein), beta 1 (88kD) /FL=gb:NM_001904.1 NM_001904 catenin (cadherin-associated protein), beta 1, 88kDa CTNNB1 1499 NM_001098209 /// NM_001098210 /// NM_001904 /// XM_005264886 /// XM_006712983 /// XM_006712984 /// XM_006712985 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000578 // embryonic axis specification // not recorded /// 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001569 // patterning of blood vessels // inferred by curator /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001709 // cell fate determination // inferred from electronic annotation /// 0001711 // endodermal cell fate commitment // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // traceable author statement /// 0001840 // neural plate development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002089 // lens morphogenesis in camera-type eye // inferred from electronic annotation /// 0003136 // negative regulation of heart induction by canonical Wnt signaling pathway // not recorded /// 0003266 // regulation of secondary heart field cardioblast proliferation // inferred from electronic annotation /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // not recorded /// 0003338 // metanephros morphogenesis // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007016 // cytoskeletal anchoring at plasma membrane // not recorded /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007160 // cell-matrix adhesion // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007403 // glial cell fate determination // not recorded /// 0007494 // midgut development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009725 // response to hormone // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0009950 // dorsal/ventral axis specification // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from genetic interaction /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // inferred from mutant phenotype /// 0014010 // Schwann cell proliferation // not recorded /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from direct assay /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from mutant phenotype /// 0021819 // layer formation in cerebral cortex // inferred from electronic annotation /// 0022009 // central nervous system vasculogenesis // not recorded /// 0022405 // hair cycle process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0030539 // male genitalia development // not recorded /// 0030856 // regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030858 // positive regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0030997 // regulation of centriole-centriole cohesion // inferred from direct assay /// 0031016 // pancreas development // not recorded /// 0031069 // hair follicle morphogenesis // not recorded /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0032355 // response to estradiol // inferred from direct assay /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0033077 // T cell differentiation in thymus // not recorded /// 0033234 // negative regulation of protein sumoylation // inferred from direct assay /// 0034097 // response to cytokine // inferred from electronic annotation /// 0034333 // adherens junction assembly // inferred from mutant phenotype /// 0034394 // protein localization to cell surface // inferred from mutant phenotype /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035112 // genitalia morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035315 // hair cell differentiation // traceable author statement /// 0036023 // embryonic skeletal limb joint morphogenesis // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042129 // regulation of T cell proliferation // not recorded /// 0042475 // odontogenesis of dentin-containing tooth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042692 // muscle cell differentiation // traceable author statement /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // not recorded /// 0043410 // positive regulation of MAPK cascade // not recorded /// 0043587 // tongue morphogenesis // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043627 // response to estrogen // inferred from electronic annotation /// 0044334 // canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition // inferred from mutant phenotype /// 0044336 // canonical Wnt signaling pathway involved in negative regulation of apoptotic process // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045453 // bone resorption // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0045765 // regulation of angiogenesis // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0048145 // regulation of fibroblast proliferation // traceable author statement /// 0048262 // determination of dorsal/ventral asymmetry // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048489 // synaptic vesicle transport // not recorded /// 0048513 // organ development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048599 // oocyte development // not recorded /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0048660 // regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051149 // positive regulation of muscle cell differentiation // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0060066 // oviduct development // inferred from electronic annotation /// 0060070 // canonical Wnt signaling pathway // inferred from direct assay /// 0060173 // limb development // inferred from electronic annotation /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060440 // trachea formation // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060479 // lung cell differentiation // not recorded /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060492 // lung induction // not recorded /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0060789 // hair follicle placode formation // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0061047 // positive regulation of branching involved in lung morphogenesis // not recorded /// 0061154 // endothelial tube morphogenesis // inferred from mutant phenotype /// 0061198 // fungiform papilla formation // inferred from electronic annotation /// 0061324 // canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation // inferred from sequence or structural similarity /// 0070602 // regulation of centromeric sister chromatid cohesion // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from mutant phenotype /// 0071407 // cellular response to organic cyclic compound // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // inferred from direct assay /// 0072001 // renal system development // inferred from electronic annotation /// 0072033 // renal vesicle formation // not recorded /// 0072053 // renal inner medulla development // not recorded /// 0072054 // renal outer medulla development // not recorded /// 0072079 // nephron tubule formation // not recorded /// 0072182 // regulation of nephron tubule epithelial cell differentiation // inferred from sequence or structural similarity /// 0090279 // regulation of calcium ion import // inferred from direct assay /// 2000008 // regulation of protein localization to cell surface // inferred from direct assay /// 2000017 // positive regulation of determination of dorsal identity // inferred from electronic annotation /// 2001234 // negative regulation of apoptotic signaling pathway // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005915 // zonula adherens // not recorded /// 0005916 // fascia adherens // not recorded /// 0005924 // cell-substrate adherens junction // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0009898 // cytoplasmic side of plasma membrane // not recorded /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0016342 // catenin complex // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from direct assay /// 0030054 // cell junction // traceable author statement /// 0030057 // desmosome // not recorded /// 0030877 // beta-catenin destruction complex // inferred from direct assay /// 0031253 // cell projection membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // not recorded /// 0032993 // protein-DNA complex // inferred from direct assay /// 0034750 // Scrib-APC-beta-catenin complex // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043296 // apical junction complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070369 // beta-catenin-TCF7L2 complex // inferred from direct assay /// 0071664 // catenin-TCF7L2 complex // inferred from electronic annotation /// 0071944 // cell periphery // inferred from direct assay 0001102 // RNA polymerase II activating transcription factor binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0004871 // signal transducer activity // non-traceable author statement /// 0005198 // structural molecule activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from physical interaction /// 0035257 // nuclear hormone receptor binding // traceable author statement /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044325 // ion channel binding // inferred from physical interaction /// 0045294 // alpha-catenin binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from physical interaction /// 0046332 // SMAD binding // inferred from physical interaction /// 0050681 // androgen receptor binding // non-traceable author statement /// 0070411 // I-SMAD binding // inferred from physical interaction /// 0070412 // R-SMAD binding // inferred from physical interaction /// 0070491 // repressing transcription factor binding // inferred from electronic annotation 15.42 363.96 0.39 0.71 0.76 -4.62
217379_at 217379_at AL121934 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL121934 /DEF=Human DNA sequence from clone RP11-209A2 on chromosome 6. Contains an RPL10 (60S ribosomal protein L10) pseudogene, ESTs, STSs and GSSs /FEA=CDS /DB_XREF=gi:9795199 /UG=Hs.272340 Human DNA sequence from clone RP11-209A2 on chromosome 6. Contains an RPL10 (60S ribosomal protein L10) pseudogene, ESTs, STSs and GSSs AL121934 RP11-209A2.1 -33.15 645.38 -0.39 0.71 0.76 -4.62
212331_at 212331_at X76061 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X76061.1 /DEF=H.sapiens p130 mRNA for 130K protein. /FEA=mRNA /GEN=p130 /PROD=130K protein /DB_XREF=gi:416030 /UG=Hs.79362 retinoblastoma-like 2 (p130) /FL=gb:NM_005611.1 X76061 retinoblastoma-like 2 RBL2 5934 NM_005611 /// XM_005256083 0000278 // mitotic cell cycle // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043550 // regulation of lipid kinase activity // inferred from direct assay /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -10.98 71.59 -0.39 0.71 0.76 -4.62
201110_s_at 201110_s_at NM_003246 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003246.1 /DEF=Homo sapiens thrombospondin 1 (THBS1), mRNA. /FEA=mRNA /GEN=THBS1 /PROD=thrombospondin 1 /DB_XREF=gi:4507484 /UG=Hs.87409 thrombospondin 1 /FL=gb:NM_003246.1 NM_003246 thrombospondin 1 THBS1 7057 NM_003246 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0001666 // response to hypoxia // non-traceable author statement /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001953 // negative regulation of cell-matrix adhesion // inferred from direct assay /// 0002040 // sprouting angiogenesis // inferred from mutant phenotype /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0002576 // platelet degranulation // traceable author statement /// 0002581 // negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from direct assay /// 0002605 // negative regulation of dendritic cell antigen processing and presentation // inferred from direct assay /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003197 // endocardial cushion development // inferred from electronic annotation /// 0003417 // growth plate cartilage development // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from expression pattern /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007155 // cell adhesion // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009749 // response to glucose // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // inferred from direct assay /// 0010596 // negative regulation of endothelial cell migration // inferred from direct assay /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from direct assay /// 0010751 // negative regulation of nitric oxide mediated signal transduction // inferred from direct assay /// 0010754 // negative regulation of cGMP-mediated signaling // inferred from direct assay /// 0010757 // negative regulation of plasminogen activation // inferred from direct assay /// 0010759 // positive regulation of macrophage chemotaxis // inferred from sequence or structural similarity /// 0010763 // positive regulation of fibroblast migration // inferred from direct assay /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0018149 // peptide cross-linking // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0030194 // positive regulation of blood coagulation // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032570 // response to progesterone // traceable author statement /// 0032695 // negative regulation of interleukin-12 production // inferred from direct assay /// 0032914 // positive regulation of transforming growth factor beta1 production // inferred from sequence or structural similarity /// 0033574 // response to testosterone // inferred from electronic annotation /// 0034605 // cellular response to heat // non-traceable author statement /// 0034976 // response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from direct assay /// 0043032 // positive regulation of macrophage activation // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from direct assay /// 0043652 // engulfment of apoptotic cell // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0048266 // behavioral response to pain // inferred from sequence or structural similarity /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050921 // positive regulation of chemotaxis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay /// 0051895 // negative regulation of focal adhesion assembly // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0051918 // negative regulation of fibrinolysis // inferred from direct assay /// 0071356 // cellular response to tumor necrosis factor // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071636 // positive regulation of transforming growth factor beta production // inferred from electronic annotation /// 1900119 // positive regulation of execution phase of apoptosis // inferred from direct assay /// 1902043 // positive regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from direct assay /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from direct assay /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from direct assay /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005577 // fibrinogen complex // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity /// 0030141 // secretory granule // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // traceable author statement /// 0031091 // platelet alpha granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001786 // phosphatidylserine binding // inferred from direct assay /// 0001948 // glycoprotein binding // non-traceable author statement /// 0001968 // fibronectin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from mutant phenotype /// 0005509 // calcium ion binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from direct assay /// 0017134 // fibroblast growth factor binding // inferred from direct assay /// 0030169 // low-density lipoprotein particle binding // inferred from direct assay /// 0042802 // identical protein binding // non-traceable author statement /// 0043236 // laminin binding // inferred from direct assay /// 0043394 // proteoglycan binding // traceable author statement /// 0050431 // transforming growth factor beta binding // inferred from sequence or structural similarity /// 0050431 // transforming growth factor beta binding // traceable author statement /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0070051 // fibrinogen binding // inferred from direct assay /// 0070052 // collagen V binding // inferred from direct assay 43.65 1276.78 0.39 0.71 0.76 -4.62
200040_at 200040_at NM_006559 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006559.1 /DEF=Homo sapiens GAP-associated tyrosine phosphoprotein p62 (Sam68) (SAM68), mRNA. /FEA=mRNA /GEN=SAM68 /PROD=GAP-associated tyrosine phosphoprotein p62(Sam68) /DB_XREF=gi:5730026 /UG=Hs.119537 GAP-associated tyrosine phosphoprotein p62 (Sam68) /FL=gb:BC000717.1 gb:M88108.1 gb:NM_006559.1 NM_006559 KH domain containing, RNA binding, signal transduction associated 1 KHDRBS1 10657 NM_001271878 /// NM_006559 /// NR_073498 /// NR_073499 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from direct assay /// 0008283 // cell proliferation // traceable author statement /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from physical interaction /// 0031647 // regulation of protein stability // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045948 // positive regulation of translational initiation // inferred from direct assay /// 0046831 // regulation of RNA export from nucleus // inferred from sequence or structural similarity /// 0046833 // positive regulation of RNA export from nucleus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070618 // Grb2-Sos complex // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0005070 // SH3/SH2 adaptor activity // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from direct assay /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 18.25 765.60 0.39 0.71 0.77 -4.62
211935_at 211935_at D31885 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:D31885.1 /DEF=Human mRNA for KIAA0069 gene, partial cds. /FEA=mRNA /GEN=KIAA0069 /DB_XREF=gi:505097 /UG=Hs.75249 ADP-ribosylation factor-like 6 interacting protein D31885 ADP-ribosylation factor-like 6 interacting protein 1 ARL6IP1 23204 NM_015161 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 22.98 552.36 0.39 0.71 0.77 -4.62
202306_at 202306_at NM_002696 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002696.1 /DEF=Homo sapiens polymerase (RNA) II (DNA directed) polypeptide G (POLR2G), mRNA. /FEA=mRNA /GEN=POLR2G /PROD=polymerase (RNA) II (DNA directed) polypeptideG /DB_XREF=gi:4505946 /UG=Hs.14839 polymerase (RNA) II (DNA directed) polypeptide G /FL=gb:NM_002696.1 gb:U20659.1 NM_002696 polymerase (RNA) II (DNA directed) polypeptide G POLR2G 5436 NM_002696 0000291 // nuclear-transcribed mRNA catabolic process, exonucleolytic // not recorded /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0045948 // positive regulation of translational initiation // not recorded /// 0050434 // positive regulation of viral transcription // traceable author statement /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // not recorded 0000932 // cytoplasmic mRNA processing body // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0003697 // single-stranded DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // not recorded /// 0003899 // DNA-directed RNA polymerase activity // not recorded /// 0031369 // translation initiation factor binding // not recorded 17.48 512.84 0.39 0.71 0.77 -4.62
201843_s_at 201843_s_at NM_004105 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004105.2 /DEF=Homo sapiens EGF-containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 1, mRNA. /FEA=mRNA /GEN=EFEMP1 /PROD=EGF-containing fibulin-like extracellular matrixprotein 1 precursor, isoform a precursor /DB_XREF=gi:9665261 /UG=Hs.76224 EGF-containing fibulin-like extracellular matrix protein 1 /FL=gb:U03877.1 gb:NM_004105.2 NM_004105 EGF containing fibulin-like extracellular matrix protein 1 EFEMP1 2202 NM_001039348 /// NM_001039349 /// NM_004105 /// XM_005264205 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007601 // visual perception // traceable author statement /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030198 // extracellular matrix organization // traceable author statement /// 0032331 // negative regulation of chondrocyte differentiation // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005006 // epidermal growth factor-activated receptor activity // inferred from direct assay /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation -43.32 2011.11 -0.38 0.71 0.77 -4.62
211945_s_at 211945_s_at BG500301 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG500301 /FEA=EST /DB_XREF=gi:13461818 /DB_XREF=est:602546969F1 /CLONE=IMAGE:4669168 /UG=Hs.287797 Homo sapiens integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (ITGB1), mRNA BG500301 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) ITGB1 3688 NM_002211 /// NM_033666 /// NM_033667 /// NM_033668 /// NM_033669 /// NM_133376 /// XM_005252448 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006968 // cellular defense response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // traceable author statement /// 0007159 // leukocyte cell-cell adhesion // inferred from direct assay /// 0007160 // cell-matrix adhesion // inferred from mutant phenotype /// 0007161 // calcium-independent cell-matrix adhesion // inferred from genetic interaction /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016477 // cell migration // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021943 // formation of radial glial scaffolds // inferred from electronic annotation /// 0030183 // B cell differentiation // inferred by curator /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031345 // negative regulation of cell projection organization // inferred from electronic annotation /// 0031589 // cell-substrate adhesion // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0032594 // protein transport within lipid bilayer // inferred from electronic annotation /// 0033631 // cell-cell adhesion mediated by integrin // inferred from expression pattern /// 0034329 // cell junction assembly // traceable author statement /// 0034698 // response to gonadotropin // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from genetic interaction /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050776 // regulation of immune response // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071305 // cellular response to vitamin D // inferred from electronic annotation /// 0071479 // cellular response to ionizing radiation // inferred from electronic annotation /// 0071559 // response to transforming growth factor beta // inferred from electronic annotation /// 2000811 // negative regulation of anoikis // inferred from mutant phenotype 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0001726 // ruffle // traceable author statement /// 0005604 // basement membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0008305 // integrin complex // non-traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from electronic annotation /// 0030175 // filopodium // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0034667 // integrin alpha3-beta1 complex // inferred from electronic annotation /// 0034677 // integrin alpha7-beta1 complex // inferred from electronic annotation /// 0034678 // integrin alpha8-beta1 complex // traceable author statement /// 0034679 // integrin alpha9-beta1 complex // inferred from electronic annotation /// 0035748 // myelin sheath abaxonal region // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001968 // fibronectin binding // inferred from electronic annotation /// 0002020 // protease binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0043236 // laminin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0050839 // cell adhesion molecule binding // inferred from physical interaction /// 0051393 // alpha-actinin binding // inferred from electronic annotation -39.90 1983.50 -0.38 0.71 0.77 -4.62
214119_s_at 214119_s_at AI936769 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI936769 /FEA=EST /DB_XREF=gi:5675639 /DB_XREF=est:wp69c11.x1 /CLONE=IMAGE:2467028 /UG=Hs.752 FK506-binding protein 1A (12kD) AI936769 FK506 binding protein 1A, 12kDa /// uncharacterized LOC101929368 FKBP1A /// LOC101929368 2280 /// 101929368 NM_000801 /// NM_001199786 /// NM_054014 /// XR_245428 /// XR_247917 /// XR_253167 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0006457 // protein folding // non-traceable author statement /// 0006458 // 'de novo' protein folding // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007183 // SMAD protein complex assembly // inferred from direct assay /// 0018208 // peptidyl-proline modification // /// 0022417 // protein maturation by protein folding // traceable author statement /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0032513 // negative regulation of protein phosphatase type 2B activity // inferred from direct assay /// 0032880 // regulation of protein localization // inferred from genetic interaction /// 0032925 // regulation of activin receptor signaling pathway // inferred from direct assay /// 0034205 // beta-amyloid formation // inferred from direct assay /// 0042026 // protein refolding // traceable author statement /// 0042110 // T cell activation // non-traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043206 // extracellular fibril organization // inferred from direct assay /// 0050776 // regulation of immune response // inferred from mutant phenotype /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from sequence or structural similarity /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060347 // heart trabecula formation // inferred from sequence or structural similarity /// 0061077 // chaperone-mediated protein folding // not recorded /// 0070588 // calcium ion transmembrane transport // non-traceable author statement /// 1902991 // regulation of amyloid precursor protein catabolic process // inferred from genetic interaction /// 1990000 // amyloid fibril formation // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0014802 // terminal cisterna // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030424 // axon // /// 0033017 // sarcoplasmic reticulum membrane // /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005024 // transforming growth factor beta-activated receptor activity // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005219 // ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005527 // macrolide binding // non-traceable author statement /// 0005528 // FK506 binding // inferred from direct assay /// 0005528 // FK506 binding // non-traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // inferred from direct assay /// 0034713 // type I transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0044325 // ion channel binding // inferred from sequence or structural similarity /// 0046332 // SMAD binding // inferred from physical interaction /// 0048185 // activin binding // inferred from physical interaction -34.08 1453.39 -0.38 0.71 0.77 -4.62
221734_at 221734_at BE328312 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE328312 /FEA=EST /DB_XREF=gi:9202173 /DB_XREF=est:hs95d12.x1 /CLONE=IMAGE:3144983 /UG=Hs.6614 ESTs, Weakly similar to A43932 mucin 2 precursor, intestinal H.sapiens BE328312 proline-rich coiled-coil 1 PRRC1 133619 NM_001286808 /// NM_130809 /// XM_006714529 0005794 // Golgi apparatus // inferred from electronic annotation -6.03 162.31 -0.38 0.71 0.77 -4.62
202303_x_at 202303_x_at NM_003601 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003601.1 /DEF=Homo sapiens SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 (SMARCA5), mRNA. /FEA=mRNA /GEN=SMARCA5 /PROD=SWISNF related, matrix associated, actindependent regulator of chromatin, subfamily a, member 5 /DB_XREF=gi:4507074 /UG=Hs.9456 SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 /FL=gb:AB010882.1 gb:NM_003601.1 NM_003601 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 SMARCA5 8467 NM_003601 0000183 // chromatin silencing at rDNA // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from direct assay /// 0006334 // nucleosome assembly // traceable author statement /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006352 // DNA-templated transcription, initiation // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016584 // nucleosome positioning // inferred from direct assay /// 0034080 // centromere-specific nucleosome assembly // traceable author statement /// 0043044 // ATP-dependent chromatin remodeling // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from electronic annotation 0000793 // condensed chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005677 // chromatin silencing complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016589 // NURF complex // inferred from direct assay /// 0031010 // ISWI-type complex // inferred from electronic annotation /// 0031213 // RSF complex // inferred from physical interaction /// 0043596 // nuclear replication fork // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0031491 // nucleosome binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from direct assay 5.53 126.36 0.38 0.71 0.77 -4.62
201093_x_at 201093_x_at NM_004168 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004168.1 /DEF=Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=SDHA /PROD=succinate dehydrogenase complex, subunit A,flavoprotein precursor /DB_XREF=gi:4759079 /UG=Hs.469 succinate dehydrogenase complex, subunit A, flavoprotein (Fp) /FL=gb:BC001380.1 gb:L21936.1 gb:NM_004168.1 gb:D30648.1 NM_004168 succinate dehydrogenase complex, subunit A, flavoprotein (Fp) SDHA 6389 NM_001294332 /// NM_004168 /// XM_005248329 /// XM_005248331 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006105 // succinate metabolic process // inferred from direct assay /// 0007399 // nervous system development // inferred from mutant phenotype /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from direct assay /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity /// 0005749 // mitochondrial respiratory chain complex II // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000104 // succinate dehydrogenase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008177 // succinate dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // flavin adenine dinucleotide binding // inferred from electronic annotation 12.68 199.96 0.38 0.71 0.77 -4.62
218220_at 218220_at NM_021640 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021640.1 /DEF=Homo sapiens MYG1 protein (MYG1), mRNA. /FEA=mRNA /GEN=MYG1 /PROD=MYG1 protein /DB_XREF=gi:11056017 /UG=Hs.15760 MYG1 protein /FL=gb:AF289485.1 gb:NM_021640.1 NM_021640 chromosome 12 open reading frame 10 C12orf10 60314 NM_021640 0035641 // locomotory exploration behavior // inferred from electronic annotation /// 0043473 // pigmentation // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 6.38 112.51 0.38 0.71 0.77 -4.62
213846_at 213846_at AA382702 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA382702 /FEA=EST /DB_XREF=gi:2035020 /DB_XREF=est:EST95939 /UG=Hs.3462 cytochrome c oxidase subunit VIIc AA382702 cytochrome c oxidase subunit VIIc COX7C 1350 NM_001867 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation -5.65 182.30 -0.38 0.71 0.77 -4.62
208095_s_at 208095_s_at NM_001222 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001222.1 /DEF=Homo sapiens calciumcalmodulin-dependent protein kinase (CaM kinase) II gamma (CAMK2G), mRNA. /FEA=mRNA /GEN=CAMK2G /PROD=calciumcalmodulin-dependent protein kinase (CaMkinase) II gamma /DB_XREF=gi:4502554 /UG=Hs.250857 calciumcalmodulin-dependent protein kinase (CaM kinase) II gamma /FL=gb:U81554.1 gb:NM_001222.1 NM_001222 signal recognition particle 72kDa SRP72 6731 NM_001267722 /// NM_006947 /// XM_005265765 0006412 // translation // traceable author statement /// 0006468 // protein phosphorylation // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0044267 // cellular protein metabolic process // traceable author statement 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inferred from electronic annotation 0004871 // signal transducer activity // non-traceable author statement /// 0005047 // signal recognition particle binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -20.20 431.52 -0.38 0.71 0.77 -4.62
208865_at 208865_at BG534245 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG534245 /FEA=EST /DB_XREF=gi:13525785 /DB_XREF=est:602553366F1 /CLONE=IMAGE:4662880 /UG=Hs.144477 hypothetical protein PRO2975 /FL=gb:AF119911.1 BG534245 casein kinase 1, alpha 1 CSNK1A1 1452 NM_001025105 /// NM_001271741 /// NM_001271742 /// NM_001892 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007166 // cell surface receptor signaling pathway // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation -21.20 725.95 -0.38 0.71 0.77 -4.62
212129_at 212129_at AI589507 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI589507 /FEA=EST /DB_XREF=gi:4598555 /DB_XREF=est:tm57a05.x1 /CLONE=IMAGE:2162192 /UG=Hs.83724 hypothetical protein MGC5466 AI589507 non imprinted in Prader-Willi/Angelman syndrome 2 NIPA2 81614 NM_001008860 /// NM_001008892 /// NM_001008894 /// NM_001184888 /// NM_001184889 /// NM_030922 /// XM_005272546 /// XM_005272547 /// XM_005272548 /// XM_005272549 /// XM_005272550 /// XM_005272552 /// XM_005272553 /// XM_006720364 /// XM_006720365 /// XM_006720366 /// XM_006720367 /// XM_006720368 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015693 // magnesium ion transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0015095 // magnesium ion transmembrane transporter activity // inferred from electronic annotation 32.00 478.38 0.38 0.72 0.77 -4.62
221520_s_at 221520_s_at BC001651 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001651.1 /DEF=Homo sapiens, hypothetical protein FLJ10468, clone MGC:2726, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein FLJ10468 /DB_XREF=gi:12804484 /UG=Hs.48855 hypothetical protein FLJ10468 /FL=gb:BC000703.1 gb:BC001651.1 BC001651 cell division cycle associated 8 CDCA8 55143 NM_001256875 /// NM_018101 0000089 // mitotic metaphase // inferred from mutant phenotype /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005825 // half bridge of spindle pole body // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0010369 // chromocenter // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0032133 // chromosome passenger complex // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay /// 0045171 // intercellular bridge // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 7.85 142.05 0.38 0.72 0.77 -4.62
200673_at 200673_at NM_014713 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014713.2 /DEF=Homo sapiens lysosomal-associated protein transmembrane 4 alpha (MBNT), mRNA. /FEA=mRNA /GEN=MBNT /PROD=lysosomal-associated protein transmembrane 4alpha /DB_XREF=gi:13518239 /UG=Hs.111894 lysosomal-associated protein transmembrane 4 alpha /FL=gb:BC000421.1 gb:BC003158.1 gb:NM_014713.2 gb:D14696.1 NM_014713 lysosomal protein transmembrane 4 alpha LAPTM4A 9741 NM_014713 0006810 // transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 46.60 1157.75 0.38 0.72 0.77 -4.62
200084_at 200084_at BE748698 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE748698 /FEA=EST /DB_XREF=gi:10162690 /DB_XREF=est:601571740T1 /CLONE=IMAGE:3838712 /UG=Hs.78050 small acidic protein BE748698 chromosome 11 open reading frame 58 C11orf58 10944 NM_001142705 /// NM_014267 18.13 574.24 0.38 0.72 0.77 -4.62
201069_at 201069_at NM_004530 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004530.1 /DEF=Homo sapiens matrix metalloproteinase 2 (gelatinase A, 72kD gelatinase, 72kD type IV collagenase) (MMP2), mRNA. /FEA=mRNA /GEN=MMP2 /PROD=matrix metalloproteinase 2 preproprotein /DB_XREF=gi:11342665 /UG=Hs.111301 matrix metalloproteinase 2 (gelatinase A, 72kD gelatinase, 72kD type IV collagenase) /FL=gb:NM_004530.1 gb:BC002576.1 NM_004530 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) MMP2 4313 NM_001127891 /// NM_004530 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001955 // blood vessel maturation // inferred from electronic annotation /// 0001957 // intramembranous ossification // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060346 // bone trabecula formation // inferred from electronic annotation /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -23.20 1598.17 -0.38 0.72 0.77 -4.62
210949_s_at 210949_s_at BC000533 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000533.1 /DEF=Homo sapiens, Similar to eukaryotic translation initiation factor 3, subunit 8 (110kD), clone MGC:8693, mRNA, complete cds. /FEA=mRNA /PROD=Similar to eukaryotic translation initiationfactor 3, subunit 8 (110kD) /DB_XREF=gi:12653522 /UG=Hs.4835 eukaryotic translation initiation factor 3, subunit 8 (110kD) /FL=gb:BC000533.1 BC000533 eukaryotic translation initiation factor 3, subunit C /// eukaryotic translation initiation factor 3, subunit C-like EIF3C /// EIF3CL 8663 /// 728689 NM_001037808 /// NM_001099661 /// NM_001199142 /// NM_001267574 /// NM_001286478 /// NM_003752 /// XM_005255535 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -53.38 1394.14 -0.37 0.72 0.77 -4.62
203401_at 203401_at NM_002765 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002765.1 /DEF=Homo sapiens phosphoribosyl pyrophosphate synthetase 2 (PRPS2), mRNA. /FEA=mRNA /GEN=PRPS2 /PROD=phosphoribosyl pyrophosphate synthetase 2 /DB_XREF=gi:4506128 /UG=Hs.2910 phosphoribosyl pyrophosphate synthetase 2 /FL=gb:NM_002765.1 NM_002765 phosphoribosyl pyrophosphate synthetase 2 PRPS2 5634 NM_001039091 /// NM_002765 0006015 // 5-phosphoribose 1-diphosphate biosynthetic process // inferred from electronic annotation /// 0006139 // nucleobase-containing compound metabolic process // traceable author statement /// 0006167 // AMP biosynthetic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0044249 // cellular biosynthetic process // inferred from electronic annotation 0002189 // ribose phosphate diphosphokinase complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016208 // AMP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 5.12 96.29 0.37 0.72 0.77 -4.62
203510_at 203510_at BG170541 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG170541 /FEA=EST /DB_XREF=gi:12677244 /DB_XREF=est:602322942F1 /CLONE=IMAGE:4425947 /UG=Hs.285754 met proto-oncogene (hepatocyte growth factor receptor) /FL=gb:J02958.1 gb:NM_000245.1 BG170541 MET proto-oncogene, receptor tyrosine kinase MET 4233 NM_000245 /// NM_001127500 /// XM_006715988 /// XM_006715989 /// XM_006715990 /// XM_006715991 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0001890 // placenta development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // non-traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0010828 // positive regulation of glucose transport // inferred from electronic annotation /// 0014812 // muscle cell migration // inferred from electronic annotation /// 0014902 // myotube differentiation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // non-traceable author statement /// 0018108 // peptidyl-tyrosine phosphorylation // traceable author statement /// 0030534 // adult behavior // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048012 // hepatocyte growth factor receptor signaling pathway // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from mutant phenotype /// 0050918 // positive chemotaxis // inferred from direct assay /// 0051450 // myoblast proliferation // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0071526 // semaphorin-plexin signaling pathway // inferred from direct assay /// 1901299 // negative regulation of hydrogen peroxide-mediated programmed cell death // inferred from mutant phenotype /// 2001028 // positive regulation of endothelial cell chemotaxis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // non-traceable author statement /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005008 // hepatocyte growth factor-activated receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction -6.88 108.64 -0.37 0.72 0.77 -4.62
35147_at 35147_at AB002360 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AB002360:Human mRNA for KIAA0362 gene, partial cds /cds=(0,3327) /gb=AB002360 /gi=2224664 /ug=Hs.25515 /len=5391 AB002360 MCF.2 cell line derived transforming sequence-like MCF2L 23263 NM_001112732 /// NM_024979 /// XM_005268307 /// XM_005268308 /// XM_005268309 /// XM_005268310 /// XM_005268312 /// XM_005268313 /// XM_005268314 /// XM_005268315 /// XM_005268316 /// XM_006719966 /// XM_006719967 /// XM_006719968 /// XR_429282 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0097190 // apoptotic signaling pathway // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // 1-phosphatidylinositol binding // inferred from electronic annotation 4.88 76.44 0.37 0.72 0.78 -4.62
208982_at 208982_at AW574504 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW574504 /FEA=EST /DB_XREF=gi:7246055 /DB_XREF=est:UI-HF-BK0-aab-h-05-0-UI.s1 /CLONE=IMAGE:3053409 /UG=Hs.78146 plateletendothelial cell adhesion molecule (CD31 antigen) /FL=gb:M37780.1 gb:M28526.1 gb:NM_000442.1 AW574504 platelet/endothelial cell adhesion molecule 1 PECAM1 5175 NM_000442 /// XM_005276880 /// XM_005276881 /// XM_005276882 /// XM_005276883 /// XM_006721944 /// XM_006721945 0002576 // platelet degranulation // traceable author statement /// 0006909 // phagocytosis // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008037 // cell recognition // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0050904 // diapedesis // inferred from direct assay /// 0072011 // glomerular endothelium development // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 67.88 1707.74 0.37 0.72 0.78 -4.62
200760_s_at 200760_s_at N92494 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N92494 /FEA=EST /DB_XREF=gi:1264803 /DB_XREF=est:zb12h11.s1 /CLONE=IMAGE:301893 /UG=Hs.92384 vitamin A responsive; cytoskeleton related /FL=gb:BC005143.1 gb:AF070523.1 gb:AF125530.1 gb:AF161476.1 gb:NM_006407.2 N92494 ADP-ribosylation factor-like 6 interacting protein 5 ARL6IP5 10550 NM_006407 0008631 // intrinsic apoptotic signaling pathway in response to oxidative stress // inferred from direct assay /// 0010917 // negative regulation of mitochondrial membrane potential // inferred from mutant phenotype /// 0015813 // L-glutamate transport // inferred from sequence or structural similarity /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0051051 // negative regulation of transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation -13.62 415.61 -0.37 0.72 0.78 -4.62
202576_s_at 202576_s_at AL553254 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL553254 /FEA=EST /DB_XREF=gi:12892919 /DB_XREF=est:AL553254 /CLONE=CS0DI073YF07 (3 prime) /UG=Hs.226396 hypothetical protein FLJ11126 /FL=gb:BC005162.1 gb:NM_018332.1 AL553254 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A /// DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B DDX19A /// DDX19B 11269 /// 55308 NM_001014449 /// NM_001014451 /// NM_001257172 /// NM_001257173 /// NM_001257174 /// NM_001257175 /// NM_007242 /// NM_018332 /// XM_005256030 /// XM_006721126 /// XM_006721127 0006406 // mRNA export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 7.62 137.74 0.37 0.72 0.78 -4.62
202042_at 202042_at NM_002109 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002109.2 /DEF=Homo sapiens histidyl-tRNA synthetase (HARS), mRNA. /FEA=mRNA /GEN=HARS /PROD=histidyl tRNA synthetase /DB_XREF=gi:6996013 /UG=Hs.77798 histidyl-tRNA synthetase /FL=gb:NM_002109.2 NM_002109 histidyl-tRNA synthetase /// uncharacterized LOC101928623 HARS /// LOC101928623 3035 /// 101928623 NM_001258040 /// NM_001258041 /// NM_001258042 /// NM_001289092 /// NM_001289093 /// NM_001289094 /// NM_002109 /// XM_005268428 /// XR_242729 /// XR_242730 /// XR_247486 /// XR_252702 /// XR_252703 /// XR_424088 /// XR_424089 /// XR_424090 /// XR_428675 /// XR_432546 0006412 // translation // non-traceable author statement /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006427 // histidyl-tRNA aminoacylation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004821 // histidine-tRNA ligase activity // non-traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation -9.02 240.04 -0.37 0.72 0.78 -4.62
32137_at 32137_at Y14330 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AF029778:Homo sapiens Jagged2 (JAG2) mRNA, complete cds /cds=(404,4120) /gb=AF029778 /gi=2605944 /ug=Hs.166154 /len=4974 Y14330 jagged 2 JAG2 3714 NM_002226 /// NM_145159 0001501 // skeletal system development // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0003016 // respiratory system process // inferred from electronic annotation /// 0007049 // cell cycle // non-traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // non-traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0009912 // auditory receptor cell fate commitment // inferred from sequence or structural similarity /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from direct assay /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from direct assay /// 0030334 // regulation of cell migration // non-traceable author statement /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042475 // odontogenesis of dentin-containing tooth // inferred from electronic annotation /// 0042492 // gamma-delta T cell differentiation // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045061 // thymic T cell selection // inferred from direct assay /// 1990134 // epithelial cell apoptotic process involved in palatal shelf morphogenesis // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005112 // Notch binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay 18.63 607.24 0.36 0.73 0.78 -4.62
217044_s_at 217044_s_at BC004298 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BC004298.1 /DEF=Homo sapiens, clone IMAGE:3622874, mRNA, partial cds. /FEA=mRNA /PROD=Unknown (protein for IMAGE:3622874) /DB_XREF=gi:13279160 /UG=Hs.198037 KIAA0599 protein BC004298 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 PLEKHG3 26030 NM_015549 /// XM_005267511 /// XM_005267512 /// XM_005267513 /// XM_006720106 /// XM_006720107 /// XM_006720108 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 7.63 51.09 0.36 0.73 0.78 -4.62
208981_at 208981_at AA702701 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA702701 /FEA=EST /DB_XREF=gi:2705814 /DB_XREF=est:zi90h02.s1 /CLONE=IMAGE:448083 /UG=Hs.78146 plateletendothelial cell adhesion molecule (CD31 antigen) /FL=gb:M37780.1 gb:M28526.1 gb:NM_000442.1 AA702701 platelet/endothelial cell adhesion molecule 1 PECAM1 5175 NM_000442 /// XM_005276880 /// XM_005276881 /// XM_005276882 /// XM_005276883 /// XM_006721944 /// XM_006721945 0002576 // platelet degranulation // traceable author statement /// 0006909 // phagocytosis // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008037 // cell recognition // traceable author statement /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0050900 // leukocyte migration // traceable author statement /// 0050904 // diapedesis // inferred from direct assay /// 0072011 // glomerular endothelium development // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -24.97 1234.64 -0.36 0.73 0.78 -4.62
209263_x_at 209263_x_at BC000389 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000389.1 /DEF=Homo sapiens, transmembrane 4 superfamily member 7, clone MGC:8437, mRNA, complete cds. /FEA=mRNA /PROD=transmembrane 4 superfamily member 7 /DB_XREF=gi:12653240 /UG=Hs.26518 transmembrane 4 superfamily member 7 /FL=gb:BC000389.1 gb:AF022813.1 gb:AF054841.1 gb:NM_003271.1 BC000389 tetraspanin 4 TSPAN4 7106 NM_001025234 /// NM_001025235 /// NM_001025236 /// NM_001025237 /// NM_001025238 /// NM_001025239 /// NM_003271 /// XM_005253102 /// XM_005253104 /// XM_006718287 0006461 // protein complex assembly // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay 0003823 // antigen binding // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 9.88 137.16 0.36 0.73 0.78 -4.62
208870_x_at 208870_x_at BC000931 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000931.2 /DEF=Homo sapiens, ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, clone MGC:5380, mRNA, complete cds. /FEA=mRNA /PROD=ATP synthase, H+ transporting, mitochondrial F1complex, gamma polypeptide 1 /DB_XREF=gi:13111822 /UG=Hs.155433 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 /FL=gb:BC000470.1 gb:BC000931.2 gb:D16562.1 BC000931 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 ATP5C1 509 NM_001001973 /// NM_005174 0006119 // oxidative phosphorylation // non-traceable author statement /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // non-traceable author statement /// 0006754 // ATP biosynthetic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // non-traceable author statement /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // non-traceable author statement /// 0022857 // transmembrane transporter activity // inferred by curator /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation -27.60 1176.28 -0.36 0.73 0.78 -4.62
207616_s_at 207616_s_at NM_004180 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004180.1 /DEF=Homo sapiens TRAF family member-associated NFKB activator (TANK), mRNA. /FEA=mRNA /GEN=TANK /PROD=TRAF family member-associated NFKB activator /DB_XREF=gi:4759249 /UG=Hs.146847 TRAF family member-associated NFKB activator /FL=gb:U63830.1 gb:NM_004180.1 NM_004180 TRAF family member-associated NFKB activator TANK 10010 NM_001199135 /// NM_004180 /// NM_133484 /// XM_005246206 /// XM_005246207 /// XM_005246208 /// XM_005246210 /// XM_005246211 0007165 // signal transduction // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -13.22 516.79 -0.36 0.73 0.78 -4.62
204028_s_at 204028_s_at NM_012197 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012197.2 /DEF=Homo sapiens rab6 GTPase activating protein (GAP and centrosome-associated) (GAPCENA), mRNA. /FEA=mRNA /GEN=GAPCENA /PROD=rab6 GTPase activating protein (GAP andcentrosome-associated) /DB_XREF=gi:12232372 /UG=Hs.55099 rab6 GTPase activating protein (GAP and centrosome-associated) /FL=gb:NM_012197.2 NM_012197 RAB GTPase activating protein 1 RABGAP1 23637 NM_012197 /// XM_005251866 /// XM_005251868 /// XM_006717031 /// XM_006717032 0007049 // cell cycle // inferred from electronic annotation /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015631 // tubulin binding // traceable author statement -10.72 163.11 -0.36 0.73 0.78 -4.62
200006_at 200006_at NM_007262 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007262.1 /DEF=Homo sapiens RNA-binding protein regulatory subunit (DJ-1), mRNA. /FEA=mRNA /GEN=DJ-1 /PROD=RNA-binding protein regulatory subunit /DB_XREF=gi:6005748 /UG=Hs.10958 RNA-binding protein regulatory subunit /FL=gb:AF021819.1 gb:NM_007262.1 gb:D61380.1 NM_007262 parkinson protein 7 PARK7 11315 NM_001123377 /// NM_007262 /// XM_005263424 0001933 // negative regulation of protein phosphorylation // inferred from genetic interaction /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from genetic interaction /// 0006508 // proteolysis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0007338 // single fertilization // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032091 // negative regulation of protein binding // inferred from genetic interaction /// 0032091 // negative regulation of protein binding // inferred from mutant phenotype /// 0032757 // positive regulation of interleukin-8 production // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from direct assay /// 0034614 // cellular response to reactive oxygen species // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // inferred from electronic annotation /// 0043523 // regulation of neuron apoptotic process // inferred from direct assay /// 0043524 // negative regulation of neuron apoptotic process // inferred from direct assay /// 0045560 // regulation of TRAIL receptor biosynthetic process // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046826 // negative regulation of protein export from nucleus // inferred from genetic interaction /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from mutant phenotype /// 0051583 // dopamine uptake involved in synaptic transmission // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // inferred from mutant phenotype /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from sequence or structural similarity /// 0060081 // membrane hyperpolarization // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0060765 // regulation of androgen receptor signaling pathway // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay /// 0090073 // positive regulation of protein homodimerization activity // inferred from direct assay /// 1900182 // positive regulation of protein localization to nucleus // inferred from direct assay /// 1901215 // negative regulation of neuron death // inferred from direct assay /// 1901299 // negative regulation of hydrogen peroxide-mediated programmed cell death // inferred from direct assay /// 1901671 // positive regulation of superoxide dismutase activity // inferred from direct assay /// 1901984 // negative regulation of protein acetylation // inferred from direct assay /// 1903073 // negative regulation of death-inducing signaling complex assembly // inferred by curator /// 1903094 // negative regulation of protein K48-linked deubiquitination // inferred from direct assay /// 1903122 // negative regulation of TRAIL-activated apoptotic signaling pathway // inferred from mutant phenotype /// 2000157 // negative regulation of ubiquitin-specific protease activity // inferred from direct assay /// 2000277 // positive regulation of oxidative phosphorylation uncoupler activity // inferred from electronic annotation /// 2000825 // positive regulation of androgen receptor activity // inferred from mutant phenotype /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from mutant phenotype /// 2001268 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from mutant phenotype /// 0005829 // cytosol // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0004601 // peroxidase activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from direct assay /// 0016532 // superoxide dismutase copper chaperone activity // inferred from direct assay /// 0016684 // oxidoreductase activity, acting on peroxide as acceptor // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019955 // cytokine binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0044388 // small protein activating enzyme binding // inferred from physical interaction /// 0044390 // small protein conjugating enzyme binding // inferred from physical interaction /// 0050681 // androgen receptor binding // inferred from physical interaction /// 0051920 // peroxiredoxin activity // inferred from electronic annotation /// 0097110 // scaffold protein binding // inferred from physical interaction /// 1903135 // cupric ion binding // inferred from direct assay /// 1903136 // cuprous ion binding // inferred from direct assay /// 1990381 // ubiquitin-specific protease binding // inferred from physical interaction -28.55 1246.12 -0.36 0.73 0.78 -4.62
203633_at 203633_at BF001714 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF001714 /FEA=EST /DB_XREF=gi:10701989 /DB_XREF=est:7g92b09.x1 /CLONE=IMAGE:3313913 /UG=Hs.259785 carnitine palmitoyltransferase I, liver /FL=gb:NM_001876.1 gb:L39211.1 BF001714 carnitine palmitoyltransferase 1A (liver) CPT1A 1374 NM_001031847 /// NM_001876 /// XM_005273762 /// XM_005273763 0001676 // long-chain fatty acid metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006853 // carnitine shuttle // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009437 // carnitine metabolic process // inferred from direct assay /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042755 // eating behavior // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046320 // regulation of fatty acid oxidation // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031307 // integral component of mitochondrial outer membrane // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004095 // carnitine O-palmitoyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 10.45 176.07 0.36 0.73 0.78 -4.62
218604_at 218604_at NM_014319 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014319.2 /DEF=Homo sapiens integral inner nuclear membrane protein (MAN1), mRNA. /FEA=mRNA /GEN=MAN1 /PROD=integral inner nuclear membrane protein /DB_XREF=gi:7706606 /UG=Hs.7256 integral inner nuclear membrane protein /FL=gb:AF112299.2 gb:NM_014319.2 NM_014319 LEM domain containing 3 LEMD3 23592 NM_001167614 /// NM_014319 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030514 // negative regulation of BMP signaling pathway // inferred from direct assay /// 0032926 // negative regulation of activin receptor signaling pathway // inferred from direct assay /// 0035914 // skeletal muscle cell differentiation // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from direct assay /// 0005639 // integral component of nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 6.90 119.55 0.36 0.73 0.78 -4.62
207549_x_at 207549_x_at NM_002389 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002389.1 /DEF=Homo sapiens membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen) (MCP), mRNA. /FEA=mRNA /GEN=MCP /PROD=membrane cofactor protein (CD46,trophoblast-lymphocyte cross-reactive antigen) /DB_XREF=gi:11321566 /UG=Hs.83532 membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen) /FL=gb:NM_002389.1 NM_002389 CD46 molecule, complement regulatory protein CD46 4179 NM_002389 /// NM_153826 /// NM_172350 /// NM_172351 /// NM_172352 /// NM_172353 /// NM_172354 /// NM_172355 /// NM_172356 /// NM_172357 /// NM_172358 /// NM_172359 /// NM_172360 /// NM_172361 0002250 // adaptive immune response // inferred by curator /// 0002376 // immune system process // inferred from electronic annotation /// 0002456 // T cell mediated immunity // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007338 // single fertilization // inferred from electronic annotation /// 0008593 // regulation of Notch signaling pathway // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030449 // regulation of complement activation // traceable author statement /// 0032613 // interleukin-10 production // inferred from direct assay /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0035581 // sequestering of extracellular ligand from receptor // inferred from direct assay /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0043382 // positive regulation of memory T cell differentiation // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045591 // positive regulation of regulatory T cell differentiation // inferred from direct assay /// 0045916 // negative regulation of complement activation // inferred from electronic annotation /// 0071636 // positive regulation of transforming growth factor beta production // inferred from direct assay 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0002079 // inner acrosomal membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001848 // complement binding // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from physical interaction 13.93 252.96 0.35 0.74 0.79 -4.62
200091_s_at 200091_s_at AA888388 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA888388 /FEA=EST /DB_XREF=gi:3004063 /DB_XREF=est:nw79f03.s1 /CLONE=IMAGE:1252829 /UG=Hs.113029 ribosomal protein S25 AA888388 ribosomal protein S25 RPS25 6230 NM_001028 0000028 // ribosomal small subunit assembly // inferred from electronic annotation /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from direct assay /// 0005840 // ribosome // non-traceable author statement /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -49.67 1268.41 -0.35 0.74 0.79 -4.62
203890_s_at 203890_s_at BF686824 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF686824 /FEA=EST /DB_XREF=gi:11972232 /DB_XREF=est:602140792F1 /CLONE=IMAGE:4301998 /UG=Hs.25619 death-associated protein kinase 3 /FL=gb:AB007144.1 gb:NM_001348.1 gb:AB022341.1 BF686824 death-associated protein kinase 3 /// microRNA 637 DAPK3 /// MIR637 1613 /// 693222 NM_001348 /// NR_030367 /// XM_005259508 /// XM_005259509 0000910 // cytokinesis // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006915 // apoptotic process // inferred from direct assay /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006940 // regulation of smooth muscle contraction // traceable author statement /// 0007088 // regulation of mitosis // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0010506 // regulation of autophagy // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0042981 // regulation of apoptotic process // not recorded /// 0042981 // regulation of apoptotic process // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // traceable author statement /// 0071346 // cellular response to interferon-gamma // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from mutant phenotype /// 0097190 // apoptotic signaling pathway // inferred from electronic annotation /// 2000145 // regulation of cell motility // traceable author statement /// 2000249 // regulation of actin cytoskeleton reorganization // traceable author statement /// 2001241 // positive regulation of extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004683 // calmodulin-dependent protein kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043522 // leucine zipper domain binding // inferred from physical interaction -8.32 131.21 -0.35 0.74 0.79 -4.62
213619_at 213619_at AV753392 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV753392 /FEA=EST /DB_XREF=gi:10911240 /DB_XREF=est:AV753392 /CLONE=NPDAUG03 /UG=Hs.245710 heterogeneous nuclear ribonucleoprotein H1 (H) AV753392 -74.92 1443.91 -0.35 0.74 0.79 -4.62
219610_at 219610_at NM_022448 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022448.1 /DEF=Homo sapiens hypothetical protein FLJ21817 similar to Rhoip2 (FLJ21817), mRNA. /FEA=mRNA /GEN=FLJ21817 /PROD=hypothetical protein FLJ21817 similar to Rhoip2 /DB_XREF=gi:11967978 /UG=Hs.33254 hypothetical protein FLJ21817 similar to Rhoip2 /FL=gb:NM_022448.1 NM_022448 Rho guanine nucleotide exchange factor (GEF) 28 ARHGEF28 64283 NM_001080479 /// NM_001177693 /// NM_001244364 /// XM_005248568 /// XM_006714669 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 6.72 101.69 0.35 0.74 0.79 -4.62
217768_at 217768_at NM_016039 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016039.1 /DEF=Homo sapiens CGI-99 protein (LOC51637), mRNA. /FEA=mRNA /GEN=LOC51637 /PROD=CGI-99 protein /DB_XREF=gi:7706321 /UG=Hs.110803 CGI-99 protein /FL=gb:BC001722.1 gb:AF151857.1 gb:AF100755.1 gb:NM_016039.1 NM_016039 chromosome 14 open reading frame 166 C14orf166 51637 NM_016039 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0072669 // tRNA-splicing ligase complex // inferred from direct assay 0000993 // RNA polymerase II core binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 11.00 1048.67 0.35 0.74 0.79 -4.62
208248_x_at 208248_x_at NM_001642 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001642.1 /DEF=Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), mRNA. /FEA=mRNA /GEN=APLP2 /PROD=amyloid beta (A4) precursor-like protein 2 /DB_XREF=gi:4502146 /UG=Hs.279518 amyloid beta (A4) precursor-like protein 2 /FL=gb:L09209.1 gb:NM_001642.1 gb:L27631.1 gb:AF168956.1 NM_001642 amyloid beta (A4) precursor-like protein 2 APLP2 334 NM_001142276 /// NM_001142277 /// NM_001142278 /// NM_001243299 /// NM_001642 /// NR_024515 /// NR_024516 0001967 // suckling behavior // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // non-traceable author statement /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046914 // transition metal ion binding // inferred from electronic annotation -38.62 1429.01 -0.35 0.74 0.79 -4.62
208684_at 208684_at U24105 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U24105.1 /DEF=Homo sapiens coatomer protein (COPA) mRNA, complete cds. /FEA=mRNA /GEN=COPA /PROD=coatomer protein /DB_XREF=gi:1638873 /UG=Hs.75887 coatomer protein complex, subunit alpha /FL=gb:U24105.1 gb:NM_004371.2 U24105 coatomer protein complex, subunit alpha COPA 1314 NM_001098398 /// NM_004371 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0009451 // RNA modification // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030157 // pancreatic juice secretion // inferred from direct assay /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0061024 // membrane organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from direct assay /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation -19.90 618.08 -0.35 0.74 0.79 -4.62
200649_at 200649_at BC002356 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC002356.1 /DEF=Homo sapiens, nucleobindin 1, clone MGC:8479, mRNA, complete cds. /FEA=mRNA /PROD=nucleobindin 1 /DB_XREF=gi:12803104 /UG=Hs.172609 nucleobindin 1 /FL=gb:BC002356.1 gb:M96824.1 gb:NM_006184.1 BC002356 nucleobindin 1 NUCB1 4924 NM_006184 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -9.60 199.55 -0.35 0.74 0.79 -4.62
221435_x_at 221435_x_at NM_031207 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031207.1 /DEF=Homo sapiens hypothetical protein HT036 (HT036), mRNA. /FEA=CDS /GEN=HT036 /PROD=hypothetical protein HT036 /DB_XREF=gi:13654271 /FL=gb:NM_031207.1 NM_031207 hydroxypyruvate isomerase (putative) HYI 81888 NM_001190880 /// NM_001243526 /// NM_031207 /// XM_005271239 /// XM_005271240 /// XM_006710937 0008152 // metabolic process // inferred from electronic annotation 0008903 // hydroxypyruvate isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation -9.90 181.45 -0.35 0.74 0.79 -4.62
202542_s_at 202542_s_at NM_004757 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004757.1 /DEF=Homo sapiens small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating) (SCYE1), mRNA. /FEA=mRNA /GEN=SCYE1 /PROD=small inducible cytokine subfamily E, member 1 /DB_XREF=gi:4758265 /UG=Hs.146401 small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating) /FL=gb:NM_004757.1 gb:U10117.1 NM_004757 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 AIMP1 9255 NM_001142415 /// NM_001142416 /// NM_004757 0001525 // angiogenesis // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0007267 // cell-cell signaling // inferred from direct assay /// 0009611 // response to wounding // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0050900 // leukocyte migration // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from direct assay /// 0030133 // transport vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000049 // tRNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay -8.42 290.71 -0.35 0.74 0.79 -4.62
200818_at 200818_at NM_001697 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001697.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein) (ATP5O), mRNA. /FEA=mRNA /GEN=ATP5O /PROD=ATP synthase, H+ transporting, mitochondrial F1complex, O subunit (oligomycin sensitivity conferringprotein) /DB_XREF=gi:4502302 /UG=Hs.76572 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein) /FL=gb:NM_001697.1 NM_001697 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit ATP5O 539 NM_001697 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // non-traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred from mutant phenotype /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005753 // mitochondrial proton-transporting ATP synthase complex // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // non-traceable author statement /// 0008144 // drug binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation 14.67 851.01 0.34 0.74 0.79 -4.62
201488_x_at 201488_x_at BC000717 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000717.1 /DEF=Homo sapiens, GAP-associated tyrosine phosphoprotein p62 (Sam68), clone MGC:1286, mRNA, complete cds. /FEA=mRNA /PROD=GAP-associated tyrosine phosphoprotein p62(Sam68) /DB_XREF=gi:12653852 /UG=Hs.119537 GAP-associated tyrosine phosphoprotein p62 (Sam68) /FL=gb:BC000717.1 gb:M88108.1 gb:NM_006559.1 BC000717 KH domain containing, RNA binding, signal transduction associated 1 KHDRBS1 10657 NM_001271878 /// NM_006559 /// NR_073498 /// NR_073499 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007166 // cell surface receptor signaling pathway // inferred from direct assay /// 0008283 // cell proliferation // traceable author statement /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from physical interaction /// 0031647 // regulation of protein stability // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045948 // positive regulation of translational initiation // inferred from direct assay /// 0046831 // regulation of RNA export from nucleus // inferred from sequence or structural similarity /// 0046833 // positive regulation of RNA export from nucleus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070618 // Grb2-Sos complex // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0005070 // SH3/SH2 adaptor activity // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from direct assay /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -14.60 363.52 -0.34 0.74 0.79 -4.62
201112_s_at 201112_s_at NM_001316 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001316.1 /DEF=Homo sapiens chromosome segregation 1 (yeast homolog)-like (CSE1L), mRNA. /FEA=mRNA /GEN=CSE1L /PROD=chromosome segregation 1 (yeast homolog)-like /DB_XREF=gi:4503072 /UG=Hs.90073 chromosome segregation 1 (yeast homolog)-like /FL=gb:U33286.1 gb:AF053641.1 gb:NM_001316.1 NM_001316 CSE1 chromosome segregation 1-like (yeast) CSE1L 1434 NM_001256135 /// NM_001316 /// NM_177436 /// NR_045796 0006611 // protein export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008262 // importin-alpha export receptor activity // traceable author statement /// 0008536 // Ran GTPase binding // inferred from electronic annotation 16.45 591.98 0.34 0.74 0.79 -4.62
201506_at 201506_at NM_000358 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000358.1 /DEF=Homo sapiens transforming growth factor, beta-induced, 68kD (TGFBI), mRNA. /FEA=mRNA /GEN=TGFBI /PROD=transforming growth factor, beta-induced, 68kD /DB_XREF=gi:4507466 /UG=Hs.118787 transforming growth factor, beta-induced, 68kD /FL=gb:BC000097.1 gb:BC004972.1 gb:M77349.1 gb:NM_000358.1 NM_000358 transforming growth factor, beta-induced, 68kDa TGFBI 7045 NM_000358 0001525 // angiogenesis // inferred from expression pattern /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // traceable author statement /// 0007601 // visual perception // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005178 // integrin binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from physical interaction /// 0050840 // extracellular matrix binding // inferred from electronic annotation -6.75 178.93 -0.34 0.74 0.79 -4.62
205003_at 205003_at NM_014705 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014705.1 /DEF=Homo sapiens KIAA0716 gene product (KIAA0716), mRNA. /FEA=mRNA /GEN=KIAA0716 /PROD=KIAA0716 gene product /DB_XREF=gi:7662263 /UG=Hs.118140 KIAA0716 gene product /FL=gb:AB018259.1 gb:NM_014705.1 NM_014705 dedicator of cytokinesis 4 DOCK4 9732 NM_014705 /// XM_006716188 /// XM_006716189 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032855 // positive regulation of Rac GTPase activity // inferred from direct assay /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0032420 // stereocilium // inferred from sequence or structural similarity /// 0032421 // stereocilium bundle // inferred from sequence or structural similarity 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030675 // Rac GTPase activator activity // inferred from direct assay /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0048365 // Rac GTPase binding // inferred from direct assay 14.65 558.23 0.34 0.74 0.79 -4.62
212232_at 212232_at AB023231 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB023231.1 /DEF=Homo sapiens mRNA for KIAA1014 protein, partial cds. /FEA=mRNA /GEN=KIAA1014 /PROD=KIAA1014 protein /DB_XREF=gi:4589677 /UG=Hs.6834 KIAA1014 protein AB023231 formin binding protein 4 FNBP4 23360 NM_015308 /// XM_005252833 /// XM_005252834 /// XM_006718171 /// XR_242785 /// XR_242786 /// XR_428841 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -8.62 233.21 -0.34 0.74 0.79 -4.62
208666_s_at 208666_s_at BE866412 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE866412 /FEA=EST /DB_XREF=gi:10315097 /DB_XREF=est:601678647F1 /CLONE=IMAGE:3961522 /UG=Hs.119222 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein) /FL=gb:U17714.1 gb:AF116650.1 BE866412 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) ST13 6767 NM_001278589 /// NM_003932 0006457 // protein folding // traceable author statement /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0061084 // negative regulation of protein refolding // inferred from electronic annotation /// 0070389 // chaperone cofactor-dependent protein refolding // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // traceable author statement /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032564 // dATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation 13.00 245.50 0.34 0.74 0.79 -4.62
202108_at 202108_at NM_000285 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000285.1 /DEF=Homo sapiens peptidase D (PEPD), mRNA. /FEA=mRNA /GEN=PEPD /PROD=Xaa-Pro dipeptidase /DB_XREF=gi:4557834 /UG=Hs.73947 peptidase D /FL=gb:BC004305.1 gb:J04605.1 gb:NM_000285.1 NM_000285 peptidase D PEPD 5184 NM_000285 /// NM_001166056 /// NM_001166057 0006508 // proteolysis // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from electronic annotation 0070062 // extracellular vesicular exosome // inferred from direct assay 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 5.10 230.38 0.34 0.75 0.80 -4.62
218728_s_at 218728_s_at NM_014184 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014184.1 /DEF=Homo sapiens HSPC163 protein (HSPC163), mRNA. /FEA=mRNA /GEN=HSPC163 /PROD=HSPC163 protein /DB_XREF=gi:7661823 /UG=Hs.108854 HSPC163 protein /FL=gb:BC000573.1 gb:AF161512.1 gb:NM_014184.1 NM_014184 cornichon family AMPA receptor auxiliary protein 4 CNIH4 29097 NM_001277197 /// NM_001277198 /// NM_001277199 /// NM_001277200 /// NM_014184 /// NR_102347 /// XM_006711768 0035556 // intracellular signal transduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -8.95 247.93 -0.33 0.75 0.80 -4.62
216804_s_at 216804_s_at AK027217 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK027217.1 /DEF=Homo sapiens cDNA: FLJ23564 fis, clone LNG10773. /FEA=mRNA /DB_XREF=gi:10440296 /UG=Hs.306913 Homo sapiens cDNA: FLJ23564 fis, clone LNG10773 AK027217 PDZ and LIM domain 5 PDLIM5 10611 NM_001011513 /// NM_001011515 /// NM_001011516 /// NM_001256425 /// NM_001256426 /// NM_001256427 /// NM_001256428 /// NM_001256429 /// NM_006457 /// NR_046186 /// XM_005262693 /// XM_005262695 /// XM_005262696 /// XM_005262698 /// XM_006714066 /// XM_006714067 /// XM_006714068 /// XM_006714069 /// XM_006714070 0051963 // regulation of synapse assembly // inferred from sequence or structural similarity /// 0061001 // regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation 11.95 329.38 0.33 0.75 0.80 -4.62
217919_s_at 217919_s_at BE782148 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE782148 /FEA=EST /DB_XREF=gi:10203346 /DB_XREF=est:601467749F1 /CLONE=IMAGE:3870636 /UG=Hs.112110 PTD007 protein /FL=gb:AL136659.1 gb:AF078860.1 gb:AF151038.1 gb:NM_014050.1 BE782148 mitochondrial ribosomal protein L42 MRPL42 28977 NM_014050 /// NM_172177 /// NM_172178 /// NR_038159 /// NR_038160 /// NR_038161 0006412 // translation // non-traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005763 // mitochondrial small ribosomal subunit // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -10.02 270.21 -0.33 0.75 0.80 -4.62
221481_x_at 221481_x_at D55672 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D55672.1 /DEF=Human mRNA for heterogeneous nuclear ribonucleoprotein D (hnRNP D), complete cds, clone cDx7. /FEA=mRNA /PROD=heterogeneous nuclear ribonucleoprotein D (hnRNPD) /DB_XREF=gi:870744 /UG=Hs.303627 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD) /FL=gb:D55672.1 D55672 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) HNRNPD 3184 NM_001003810 /// NM_002138 /// NM_031369 /// NM_031370 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006401 // RNA catabolic process // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from mutant phenotype /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0097167 // circadian regulation of translation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042162 // telomeric DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -13.75 865.85 -0.33 0.75 0.80 -4.62
179_at 179_at U38980 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank U38980 /FEATURE= /DEFINITION=U38980 Human PMS2 related (hPMSR6) mRNA, complete cds U38980 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene DTX2P1-UPK3BP1-PMS2P11 441263 NR_023383 0006298 // mismatch repair // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0032300 // mismatch repair complex // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 8.67 265.81 0.33 0.75 0.80 -4.62
200885_at 200885_at NM_005167 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005167.1 /DEF=Homo sapiens ras homolog gene family, member C (ARHC), mRNA. /FEA=mRNA /GEN=ARHC /PROD=ras homolog gene family, member C /DB_XREF=gi:4885066 /UG=Hs.179735 ras homolog gene family, member C /FL=gb:L25081.1 gb:NM_005167.1 NM_005167 ras homolog family member C RHOC 389 NM_001042678 /// NM_001042679 /// NM_175744 0000910 // cytokinesis // inferred from direct assay /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043297 // apical junction assembly // inferred from direct assay /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 28.27 1179.59 0.33 0.75 0.80 -4.62
203151_at 203151_at AW296788 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW296788 /FEA=EST /DB_XREF=gi:6703424 /DB_XREF=est:UI-H-BW0-ajb-d-08-0-UI.s1 /CLONE=IMAGE:2731071 /UG=Hs.194301 microtubule-associated protein 1A /FL=gb:U38292.1 gb:NM_002373.1 gb:U14577.1 AW296788 microtubule-associated protein 1A MAP1A 4130 NM_002373 /// XM_005254385 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement 0005198 // structural molecule activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 5.00 84.38 0.33 0.75 0.80 -4.62
201577_at 201577_at NM_000269 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000269.1 /DEF=Homo sapiens non-metastatic cells 1, protein (NM23A) expressed in (NME1), mRNA. /FEA=mRNA /GEN=NME1 /PROD=non-metastatic cells 1 protein /DB_XREF=gi:4557796 /UG=Hs.118638 non-metastatic cells 1, protein (NM23A) expressed in /FL=gb:BC000293.1 gb:NM_000269.1 NM_000269 NME/NM23 nucleoside diphosphate kinase 1 NME1 4830 NM_000269 /// NM_198175 0002762 // negative regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0006165 // nucleoside diphosphate phosphorylation // inferred from electronic annotation /// 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0006308 // DNA catabolic process // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009142 // nucleoside triphosphate biosynthetic process // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from electronic annotation /// 0014075 // response to amine // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043388 // positive regulation of DNA binding // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045618 // positive regulation of keratinocyte differentiation // inferred from mutant phenotype /// 0045682 // regulation of epidermis development // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from electronic annotation 0001726 // ruffle // inferred from direct assay /// 0001726 // ruffle // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0071944 // cell periphery // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004536 // deoxyribonuclease activity // inferred from direct assay /// 0004550 // nucleoside diphosphate kinase activity // inferred from direct assay /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019215 // intermediate filament binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043024 // ribosomal small subunit binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 23.50 861.15 0.33 0.75 0.80 -4.62
217978_s_at 217978_s_at NM_017582 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017582.1 /DEF=Homo sapiens NICE-5 protein (HSA243666), mRNA. /FEA=mRNA /GEN=HSA243666 /PROD=NICE-5 protein /DB_XREF=gi:8923743 /UG=Hs.284233 NICE-5 protein /FL=gb:AF116721.1 gb:NM_017582.1 NM_017582 ubiquitin-conjugating enzyme E2Q family member 1 UBE2Q1 55585 NM_017582 /// XM_005245315 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -10.30 295.70 -0.33 0.75 0.80 -4.62
204528_s_at 204528_s_at NM_004537 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004537.1 /DEF=Homo sapiens nucleosome assembly protein 1-like 1 (NAP1L1), mRNA. /FEA=mRNA /GEN=NAP1L1 /PROD=nucleosome assembly protein 1-like 1 /DB_XREF=gi:4758755 /UG=Hs.179662 nucleosome assembly protein 1-like 1 /FL=gb:M86667.1 gb:NM_004537.1 NM_004537 nucleosome assembly protein 1-like 1 NAP1L1 4673 NM_004537 /// NM_139207 /// XM_005268895 /// XM_005268896 /// XM_006719422 /// XM_006719423 /// XM_006719424 /// XM_006719425 /// XR_245930 /// XR_245931 /// XR_245932 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 10.62 446.94 0.33 0.75 0.80 -4.62
213178_s_at 213178_s_at AB028989 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB028989.1 /DEF=Homo sapiens mRNA for KIAA1066 protein, partial cds. /FEA=mRNA /GEN=KIAA1066 /PROD=KIAA1066 protein /DB_XREF=gi:5689468 /UG=Hs.88500 mitogen-activated protein kinase 8 interacting protein 3 AB028989 mitogen-activated protein kinase 8 interacting protein 3 MAPK8IP3 23162 NM_001040439 /// NM_015133 /// XM_005255187 /// XM_005255188 /// XM_005255190 /// XM_006720868 /// XM_006720869 0001701 // in utero embryonic development // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // inferred from sequence or structural similarity /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0060425 // lung morphogenesis // inferred from electronic annotation 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005790 // smooth endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030673 // axolemma // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0005078 // MAP-kinase scaffold activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008432 // JUN kinase binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation -4.13 98.46 -0.33 0.75 0.80 -4.62
201104_x_at 201104_x_at NM_015383 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015383.1 /DEF=Homo sapiens hypothetical protein (DJ328E19.C1.1), mRNA. /FEA=mRNA /GEN=DJ328E19.C1.1 /PROD=hypothetical protein /DB_XREF=gi:7657016 /UG=Hs.218329 hypothetical protein /FL=gb:NM_015383.1 NM_015383 neuroblastoma breakpoint family, member 10 /// neuroblastoma breakpoint family, member 11 /// neuroblastoma breakpoint family, member 14 /// neuroblastoma breakpoint family, member 15 /// neuroblastoma breakpoint family, member 19 /// neuroblastoma breakpoint family, member 20 /// neuroblastoma breakpoint family, member 25, pseudogene /// neuroblastoma breakpoint family, member 26 /// neuroblastoma breakpoint family, member 8 /// neuroblastoma breakpoint family, member 9 NBPF10 /// NBPF11 /// NBPF14 /// NBPF15 /// NBPF19 /// NBPF20 /// NBPF25P /// NBPF26 /// NBPF8 /// NBPF9 25832 /// 200030 /// 284565 /// 400818 /// 728841 /// 100132406 /// 100288142 /// 101060226 /// 101060684 /// 101929780 NM_001037501 /// NM_001037675 /// NM_001039703 /// NM_001101663 /// NM_001102663 /// NM_001170755 /// NM_001277444 /// NM_001278267 /// NM_015383 /// NM_173638 /// NM_183372 /// NR_046188 /// NR_102404 /// NR_102405 /// NR_104217 /// NR_110864 /// XM_003960069 /// XM_003960230 /// XM_005245096 /// XM_005245097 /// XM_005276139 /// XM_005276140 /// XM_005276167 /// XM_005276168 /// XM_005276169 /// XM_005276170 /// XM_005276171 /// XM_005276172 /// XM_005276173 /// XM_005276174 /// XM_005276175 /// XM_005276176 /// XM_005276177 /// XM_005276178 /// XM_005276179 /// XM_005276180 /// XM_005276181 /// XM_005276182 /// XM_005276183 /// XM_005276184 /// XM_005276185 /// XM_005276186 /// XM_005276187 /// XM_005277469 /// XM_005277470 /// XM_005277471 /// XM_005277472 /// XM_005277473 /// XM_005277474 /// XM_005277475 /// XM_005277476 /// XM_005277477 /// XM_005277478 /// XM_005277479 /// XM_005277480 /// XM_005277481 /// XM_005277482 /// XM_005277483 /// XM_005277484 /// XM_005277485 /// XM_005277486 /// XM_005277487 /// XM_005277488 /// XM_005277503 /// XM_005277504 /// XM_005277505 /// XM_006710872 /// XM_006711091 /// XM_006711092 /// XM_006711093 /// XM_006711094 /// XM_006711095 /// XM_006711096 /// XM_006711103 /// XM_006711104 /// XM_006711197 /// XM_006711265 /// XM_006711317 /// XM_006711707 /// XM_006711708 /// XM_006711709 /// XM_006711710 /// XM_006711711 /// XM_006711712 /// XM_006726340 /// XM_006726341 /// XM_006726342 /// XM_006726343 /// XM_006726344 /// XM_006726345 /// XM_006726360 /// XM_006726361 /// XM_006726362 /// XM_006726363 /// XM_006726364 /// XM_006726365 /// XR_426769 0005737 // cytoplasm // inferred from electronic annotation 0044822 // poly(A) RNA binding // inferred from direct assay 28.75 518.07 0.32 0.75 0.80 -4.62
200824_at 200824_at NM_000852 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000852.2 /DEF=Homo sapiens glutathione S-transferase pi (GSTP1), mRNA. /FEA=mRNA /GEN=GSTP1 /PROD=glutathione transferase /DB_XREF=gi:6552334 /UG=Hs.226795 glutathione S-transferase pi /FL=gb:U62589.1 gb:U30897.1 gb:NM_000852.2 NM_000852 glutathione S-transferase pi 1 GSTP1 2950 NM_000852 0000302 // response to reactive oxygen species // inferred from sequence or structural similarity /// 0002674 // negative regulation of acute inflammatory response // non-traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006749 // glutathione metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007417 // central nervous system development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009890 // negative regulation of biosynthetic process // inferred from direct assay /// 0010804 // negative regulation of tumor necrosis factor-mediated signaling pathway // inferred by curator /// 0032691 // negative regulation of interleukin-1 beta production // inferred from direct assay /// 0032720 // negative regulation of tumor necrosis factor production // inferred from direct assay /// 0032872 // regulation of stress-activated MAPK cascade // inferred from sequence or structural similarity /// 0032873 // negative regulation of stress-activated MAPK cascade // inferred from sequence or structural similarity /// 0032930 // positive regulation of superoxide anion generation // inferred from sequence or structural similarity /// 0035726 // common myeloid progenitor cell proliferation // inferred from sequence or structural similarity /// 0035732 // nitric oxide storage // non-traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // inferred from sequence or structural similarity /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0043409 // negative regulation of MAPK cascade // non-traceable author statement /// 0043508 // negative regulation of JUN kinase activity // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0048147 // negative regulation of fibroblast proliferation // inferred from sequence or structural similarity /// 0051771 // negative regulation of nitric-oxide synthase biosynthetic process // inferred from direct assay /// 0060547 // negative regulation of necrotic cell death // inferred from sequence or structural similarity /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070664 // negative regulation of leukocyte proliferation // inferred from sequence or structural similarity /// 0071222 // cellular response to lipopolysaccharide // inferred from sequence or structural similarity /// 0071638 // negative regulation of monocyte chemotactic protein-1 production // inferred from direct assay /// 1901687 // glutathione derivative biosynthetic process // traceable author statement /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097057 // TRAF2-GSTP1 complex // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008432 // JUN kinase binding // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0019207 // kinase regulator activity // inferred from sequence or structural similarity /// 0035730 // S-nitrosoglutathione binding // inferred from direct assay /// 0035731 // dinitrosyl-iron complex binding // inferred from direct assay /// 0070026 // nitric oxide binding // non-traceable author statement 13.02 840.64 0.32 0.75 0.80 -4.62
200709_at 200709_at NM_000801 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000801.1 /DEF=Homo sapiens FK506-binding protein 1A (12kD) (FKBP1A), mRNA. /FEA=mRNA /GEN=FKBP1A /PROD=FK506-binding protein 1A (12kD) /DB_XREF=gi:4503724 /UG=Hs.752 FK506-binding protein 1A (12kD) /FL=gb:BC001925.1 gb:M34539.1 gb:NM_000801.1 NM_000801 FK506 binding protein 1A, 12kDa /// uncharacterized LOC101929368 FKBP1A /// LOC101929368 2280 /// 101929368 NM_000801 /// NM_001199786 /// NM_054014 /// XR_245428 /// XR_247917 /// XR_253167 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0006457 // protein folding // non-traceable author statement /// 0006458 // 'de novo' protein folding // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007183 // SMAD protein complex assembly // inferred from direct assay /// 0018208 // peptidyl-proline modification // /// 0022417 // protein maturation by protein folding // traceable author statement /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0032513 // negative regulation of protein phosphatase type 2B activity // inferred from direct assay /// 0032880 // regulation of protein localization // inferred from genetic interaction /// 0032925 // regulation of activin receptor signaling pathway // inferred from direct assay /// 0034205 // beta-amyloid formation // inferred from direct assay /// 0042026 // protein refolding // traceable author statement /// 0042110 // T cell activation // non-traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043206 // extracellular fibril organization // inferred from direct assay /// 0050776 // regulation of immune response // inferred from mutant phenotype /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from sequence or structural similarity /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060347 // heart trabecula formation // inferred from sequence or structural similarity /// 0061077 // chaperone-mediated protein folding // not recorded /// 0070588 // calcium ion transmembrane transport // non-traceable author statement /// 1902991 // regulation of amyloid precursor protein catabolic process // inferred from genetic interaction /// 1990000 // amyloid fibril formation // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0014802 // terminal cisterna // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030424 // axon // /// 0033017 // sarcoplasmic reticulum membrane // /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005024 // transforming growth factor beta-activated receptor activity // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005219 // ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005527 // macrolide binding // non-traceable author statement /// 0005528 // FK506 binding // inferred from direct assay /// 0005528 // FK506 binding // non-traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // inferred from direct assay /// 0034713 // type I transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0044325 // ion channel binding // inferred from sequence or structural similarity /// 0046332 // SMAD binding // inferred from physical interaction /// 0048185 // activin binding // inferred from physical interaction 23.30 2490.30 0.32 0.75 0.80 -4.62
207186_s_at 207186_s_at NM_004459 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004459.2 /DEF=Homo sapiens fetal Alzheimer antigen (FALZ), mRNA. /FEA=mRNA /GEN=FALZ /PROD=fetal Alzheimer antigen /DB_XREF=gi:6552329 /UG=Hs.99872 fetal Alzheimer antigen /FL=gb:U05237.1 gb:NM_004459.2 NM_004459 bromodomain PHD finger transcription factor BPTF 2186 NM_004459 /// NM_182641 /// XM_005257150 /// XM_005257151 /// XM_005257152 /// XM_005257153 /// XM_005257154 /// XM_005257155 /// XM_005257156 /// XM_005257157 /// XM_005257158 /// XM_005257159 /// XM_005257160 /// XM_005257161 /// XM_005257162 /// XM_006721770 /// XM_006721771 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006338 // chromatin remodeling // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007420 // brain development // inferred from mutant phenotype /// 0007492 // endoderm development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016589 // NURF complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0008134 // transcription factor binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 8.00 151.65 0.32 0.76 0.80 -4.62
201267_s_at 201267_s_at AL545523 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL545523 /FEA=EST /DB_XREF=gi:12878005 /DB_XREF=est:AL545523 /CLONE=CS0DI015YE19 (5 prime) /UG=Hs.250758 proteasome (prosome, macropain) 26S subunit, ATPase, 3 /FL=gb:M34079.1 gb:NM_002804.1 AL545523 proteasome (prosome, macropain) 26S subunit, ATPase, 3 PSMC3 5702 NM_002804 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001824 // blastocyst development // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 2001141 // regulation of RNA biosynthetic process // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0003714 // transcription corepressor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0009378 // four-way junction helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 10.03 246.49 0.32 0.76 0.80 -4.62
215906_at 215906_at S65921 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:S65921.1 /DEF=anti-colorectal carcinoma light chain=glycoprotein CANAG-50 specific IgG1 kappa human, 19.9 hybridoma, antibody 1116NS19.9, mRNA, 998 nt. /FEA=mRNA /GEN=anti-colorectal carcinoma light chain /PROD=anti-colorectal carcinoma light chain /DB_XREF=gi:425519 /UG=Hs.103996 Anti-colorectal carcinoma light chain S65921 immunoglobulin kappa chain complex Igk 243469 0030183 // B cell differentiation // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay 0003823 // antigen binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 4.78 37.69 0.32 0.76 0.80 -4.62
201898_s_at 201898_s_at AI126625 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI126625 /FEA=EST /DB_XREF=gi:3595139 /DB_XREF=est:qd83a12.x1 /CLONE=IMAGE:1736062 /UG=Hs.80612 ubiquitin-conjugating enzyme E2A (RAD6 homolog) /FL=gb:M74524.1 gb:NM_003336.1 AI126625 ubiquitin-conjugating enzyme E2A UBE2A 7319 NM_001282161 /// NM_003336 /// NM_181762 /// NM_181777 0000209 // protein polyubiquitination // traceable author statement /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0006281 // DNA repair // inferred from genetic interaction /// 0006301 // postreplication repair // non-traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // non-traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009411 // response to UV // inferred from genetic interaction /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from direct assay /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay 0000785 // chromatin // inferred from sequence or structural similarity /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0001741 // XY body // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0033503 // HULC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction 9.55 332.20 0.32 0.76 0.80 -4.62
218597_s_at 218597_s_at NM_018464 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018464.1 /DEF=Homo sapiens uncharacterized hematopoietic stemprogenitor cells protein MDS029 (MDS029), mRNA. /FEA=mRNA /GEN=MDS029 /PROD=uncharacterized hematopoietic stemprogenitorcells protein MDS029 /DB_XREF=gi:8923929 /UG=Hs.43549 uncharacterized hematopoietic stemprogenitor cells protein MDS029 /FL=gb:AF220049.1 gb:NM_018464.1 NM_018464 CDGSH iron sulfur domain 1 CISD1 55847 NM_018464 /// XM_006717916 0043457 // regulation of cellular respiration // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 8.10 367.90 0.32 0.76 0.80 -4.62
216532_x_at 216532_x_at AL138831 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL138831 /DEF=Human DNA sequence from clone RP3-406P24 on chromosome 6 Contains a thioredoxin-like pseudogene, 2 CpG islands, ESTs, STSs and GSSs /FEA=CDS /DB_XREF=gi:9863510 /UG=Hs.302081 Human DNA sequence from clone RP3-406P24 on chromosome 6 Contains a thioredoxin-like pseudogene, 2 CpG islands, ESTs, STSs and GSSs AL138831 RP3-406P24.1 -6.83 146.26 -0.32 0.76 0.80 -4.62
212721_at 212721_at AI810380 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI810380 /FEA=EST /DB_XREF=gi:5396946 /DB_XREF=est:wb87h10.x1 /CLONE=IMAGE:2312707 /UG=Hs.47274 Homo sapiens mRNA; cDNA DKFZp564B176 (from clone DKFZp564B176) AI810380 splicing regulatory glutamine/lysine-rich protein 1 SREK1 140890 NM_001077199 /// NM_001270492 /// NM_001270493 /// NM_139168 /// XM_005248439 /// XM_005248440 /// XM_005248441 /// XM_005248442 /// XM_006714535 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -5.62 219.51 -0.32 0.76 0.81 -4.62
201746_at 201746_at NM_000546 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000546.2 /DEF=Homo sapiens tumor protein p53 (Li-Fraumeni syndrome) (TP53), mRNA. /FEA=mRNA /GEN=TP53 /PROD=tumor protein p53 /DB_XREF=gi:8400737 /UG=Hs.1846 tumor protein p53 (Li-Fraumeni syndrome) /FL=gb:AF307851.1 gb:BC003596.1 gb:M14694.1 gb:M14695.1 gb:NM_000546.2 NM_000546 tumor protein p53 TP53 7157 NM_000546 /// NM_001126112 /// NM_001126113 /// NM_001126114 /// NM_001126115 /// NM_001126116 /// NM_001126117 /// NM_001126118 /// NM_001276695 /// NM_001276696 /// NM_001276697 /// NM_001276698 /// NM_001276699 /// NM_001276760 /// NM_001276761 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000733 // DNA strand renaturation // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0002309 // T cell proliferation involved in immune response // inferred from electronic annotation /// 0002326 // B cell lineage commitment // inferred from electronic annotation /// 0002360 // T cell lineage commitment // inferred from electronic annotation /// 0002931 // response to ischemia // inferred from electronic annotation /// 0006284 // base-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // inferred from mutant phenotype /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006461 // protein complex assembly // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // inferred from mutant phenotype /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006983 // ER overload response // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // traceable author statement /// 0007265 // Ras protein signal transduction // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from mutant phenotype /// 0007369 // gastrulation // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007569 // cell aging // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0008104 // protein localization // inferred from direct assay /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008340 // determination of adult lifespan // inferred from sequence or structural similarity /// 0009303 // rRNA transcription // inferred from electronic annotation /// 0009411 // response to UV // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009792 // embryo development ending in birth or egg hatching // inferred from electronic annotation /// 0010165 // response to X-ray // not recorded /// 0010332 // response to gamma radiation // inferred from mutant phenotype /// 0010666 // positive regulation of cardiac muscle cell apoptotic process // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0030154 // cell differentiation // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from mutant phenotype /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0031497 // chromatin assembly // inferred from direct assay /// 0031571 // mitotic G1 DNA damage checkpoint // inferred from mutant phenotype /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0034103 // regulation of tissue remodeling // inferred from electronic annotation /// 0034613 // cellular protein localization // inferred from direct assay /// 0034644 // cellular response to UV // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035690 // cellular response to drug // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from direct assay /// 0042981 // regulation of apoptotic process // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0043523 // regulation of neuron apoptotic process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptotic process // not recorded /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from expression pattern /// 0046902 // regulation of mitochondrial membrane permeability // traceable author statement /// 0048147 // negative regulation of fibroblast proliferation // inferred from mutant phenotype /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0051097 // negative regulation of helicase activity // traceable author statement /// 0051262 // protein tetramerization // traceable author statement /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0070243 // regulation of thymocyte apoptotic process // inferred from electronic annotation /// 0070245 // positive regulation of thymocyte apoptotic process // inferred from sequence or structural similarity /// 0071158 // positive regulation of cell cycle arrest // inferred from mutant phenotype /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0071479 // cellular response to ionizing radiation // inferred from mutant phenotype /// 0071850 // mitotic cell cycle arrest // inferred from electronic annotation /// 0072332 // intrinsic apoptotic signaling pathway by p53 class mediator // inferred from mutant phenotype /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from direct assay /// 0090343 // positive regulation of cell aging // inferred from electronic annotation /// 0090399 // replicative senescence // inferred from mutant phenotype /// 0090403 // oxidative stress-induced premature senescence // inferred from mutant phenotype /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 0097252 // oligodendrocyte apoptotic process // inferred from direct assay /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement /// 1901525 // negative regulation of macromitophagy // inferred from electronic annotation /// 1902108 // regulation of mitochondrial membrane permeability involved in apoptotic process // inferred from electronic annotation /// 2000378 // negative regulation of reactive oxygen species metabolic process // inferred from electronic annotation /// 2000379 // positive regulation of reactive oxygen species metabolic process // inferred from mutant phenotype /// 2001244 // positive regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0000785 // chromatin // not recorded /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005657 // replication fork // not recorded /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016604 // nuclear body // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from electronic annotation /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0001085 // RNA polymerase II transcription factor binding // inferred from physical interaction /// 0001228 // RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0002020 // protease binding // inferred from physical interaction /// 0002039 // p53 binding // not recorded /// 0003677 // DNA binding // inferred from mutant phenotype /// 0003682 // chromatin binding // inferred from direct assay /// 0003684 // damaged DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0035033 // histone deacetylase regulator activity // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction /// 0051721 // protein phosphatase 2A binding // inferred from physical interaction /// 0097371 // MDM2/MDM4 family protein binding // inferred from electronic annotation -6.10 282.98 -0.32 0.76 0.81 -4.62
217884_at 217884_at NM_024662 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024662.1 /DEF=Homo sapiens hypothetical protein FLJ10774; KIAA1709 protein (FLJ10774), mRNA. /FEA=mRNA /GEN=FLJ10774 /PROD=hypothetical protein FLJ12179 /DB_XREF=gi:13399321 /UG=Hs.71472 hypothetical protein FLJ10774; KIAA1709 protein /FL=gb:AL136882.1 gb:NM_024662.1 NM_024662 N-acetyltransferase 10 (GCN5-related) NAT10 55226 NM_001144030 /// NM_024662 /// XM_005252999 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 6.42 170.39 0.32 0.76 0.81 -4.62
212041_at 212041_at AL566172 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL566172 /FEA=EST /DB_XREF=gi:12918279 /DB_XREF=est:AL566172 /CLONE=CS0DF022YE19 (3 prime) /UG=Hs.106876 ATPase, H+ transporting, lysosomal (vacuolar proton pump), member D AL566172 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 ATP6V0D1 9114 NM_004691 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // non-traceable author statement /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0033572 // transferrin transport // traceable author statement /// 0042384 // cilium assembly // inferred from sequence or structural similarity /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from direct assay /// 0016471 // vacuolar proton-transporting V-type ATPase complex // non-traceable author statement /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043679 // axon terminus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation 16.03 454.44 0.32 0.76 0.81 -4.62
220199_s_at 220199_s_at NM_022831 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022831.1 /DEF=Homo sapiens hypothetical protein FLJ12806 (FLJ12806), mRNA. /FEA=mRNA /GEN=FLJ12806 /PROD=hypothetical protein FLJ12806 /DB_XREF=gi:12383075 /UG=Hs.107637 hypothetical protein FLJ12806 /FL=gb:NM_022831.1 NM_022831 axin interactor, dorsalization associated AIDA 64853 NM_022831 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // inferred from sequence or structural similarity /// 0043496 // regulation of protein homodimerization activity // inferred from sequence or structural similarity /// 0043508 // negative regulation of JUN kinase activity // inferred from direct assay /// 0046329 // negative regulation of JNK cascade // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation -13.30 218.22 -0.32 0.76 0.81 -4.62
204975_at 204975_at NM_001424 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001424.1 /DEF=Homo sapiens epithelial membrane protein 2 (EMP2), mRNA. /FEA=mRNA /GEN=EMP2 /PROD=epithelial membrane protein 2 /DB_XREF=gi:4503560 /UG=Hs.29191 epithelial membrane protein 2 /FL=gb:U52100.1 gb:NM_001424.1 NM_001424 epithelial membrane protein 2 EMP2 2013 NM_001424 /// XM_006720864 0001954 // positive regulation of cell-matrix adhesion // inferred from direct assay /// 0008283 // cell proliferation // traceable author statement /// 2001046 // positive regulation of integrin-mediated signaling pathway // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005178 // integrin binding // inferred from physical interaction 3.92 67.26 0.32 0.76 0.81 -4.62
203142_s_at 203142_s_at NM_003664 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003664.1 /DEF=Homo sapiens adaptor-related protein complex 3, beta 1 subunit (AP3B1), mRNA. /FEA=mRNA /GEN=AP3B1 /PROD=adaptor-related protein complex 3, beta 1subunit /DB_XREF=gi:4501974 /UG=Hs.155172 adaptor-related protein complex 3, beta 1 subunit /FL=gb:U91931.1 gb:U81504.1 gb:NM_003664.1 NM_003664 adaptor-related protein complex 3, beta 1 subunit AP3B1 8546 NM_001271769 /// NM_003664 /// XM_005248618 /// XM_005248619 0006622 // protein targeting to lysosome // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032438 // melanosome organization // inferred from mutant phenotype /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // inferred from electronic annotation /// 0048490 // anterograde synaptic vesicle transport // inferred from sequence or structural similarity /// 0051138 // positive regulation of NK T cell differentiation // inferred from electronic annotation 0005765 // lysosomal membrane // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030123 // AP-3 adaptor complex // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0030742 // GTP-dependent protein binding // inferred from physical interaction -8.37 255.16 -0.32 0.76 0.81 -4.62
203529_at 203529_at NM_016294 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016294.1 /DEF=Homo sapiens serinethreonine protein phosphatase catalytic subunit (LOC51723), mRNA. /FEA=mRNA /GEN=LOC51723 /PROD=serinethreonine protein phosphatase catalyticsubunit /DB_XREF=gi:7706488 /UG=Hs.80324 serinethreonine protein phosphatase catalytic subunit /FL=gb:AF035158.2 gb:NM_016294.1 NM_016294 protein phosphatase 6, catalytic subunit PPP6C 5537 NM_001123355 /// NM_001123369 /// NM_002721 /// XM_006717175 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -7.17 318.59 -0.31 0.76 0.81 -4.62
219249_s_at 219249_s_at NM_021939 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021939.1 /DEF=Homo sapiens hypothetical protein FLJ22041 similar to FK506 binding proteins (FLJ22041), mRNA. /FEA=mRNA /GEN=FLJ22041 /PROD=hypothetical protein FLJ22041 similar to FK506binding proteins /DB_XREF=gi:11345475 /UG=Hs.3849 hypothetical protein FLJ22041 similar to FK506 binding proteins /FL=gb:NM_021939.1 gb:AB045981.1 NM_021939 FK506 binding protein 10, 65 kDa FKBP10 60681 NM_021939 /// XM_006722008 0000413 // protein peptidyl-prolyl isomerization // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0061077 // chaperone-mediated protein folding // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005528 // FK506 binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -7.28 78.61 -0.31 0.76 0.81 -4.62
221882_s_at 221882_s_at AI636233 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI636233 /FEA=EST /DB_XREF=gi:4687563 /DB_XREF=est:tz93b07.x1 /CLONE=IMAGE:2296117 /UG=Hs.288940 five-span transmembrane protein M83 AI636233 transmembrane protein 8A TMEM8A 58986 NM_021259 0006412 // translation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 9.38 210.54 0.31 0.76 0.81 -4.62
209036_s_at 209036_s_at BC001917 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001917.1 /DEF=Homo sapiens, malate dehydrogenase 2, NAD (mitochondrial), clone MGC:3559, mRNA, complete cds. /FEA=mRNA /PROD=malate dehydrogenase 2, NAD (mitochondrial) /DB_XREF=gi:12804928 /UG=Hs.111076 malate dehydrogenase 2, NAD (mitochondrial) /FL=gb:BC001917.1 gb:AF047470.1 gb:NM_005918.1 BC001917 malate dehydrogenase 2, NAD (mitochondrial) MDH2 4191 NM_001282403 /// NM_001282404 /// NM_005918 /// NR_104165 0005975 // carbohydrate metabolic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006094 // gluconeogenesis // traceable author statement /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006108 // malate metabolic process // inferred from direct assay /// 0006108 // malate metabolic process // inferred from mutant phenotype /// 0006475 // internal protein amino acid acetylation // inferred from direct assay /// 0006734 // NADH metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // traceable author statement /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016615 // malate dehydrogenase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0030060 // L-malate dehydrogenase activity // not recorded /// 0030060 // L-malate dehydrogenase activity // inferred from direct assay /// 0030060 // L-malate dehydrogenase activity // inferred from mutant phenotype /// 0043621 // protein self-association // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046554 // malate dehydrogenase (NADP+) activity // inferred from electronic annotation -13.42 556.21 -0.31 0.76 0.81 -4.62
201140_s_at 201140_s_at NM_004583 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004583.1 /DEF=Homo sapiens RAB5C, member RAS oncogene family (RAB5C), mRNA. /FEA=mRNA /GEN=RAB5C /PROD=RAB5C, member RAS oncogene family /DB_XREF=gi:4759019 /UG=Hs.479 RAB5C, member RAS oncogene family /FL=gb:NM_004583.1 gb:U11293.1 gb:U18420.1 gb:AF141304.1 NM_004583 RAB5C, member RAS oncogene family RAB5C 5878 NM_001252039 /// NM_004583 /// NM_201434 0006184 // GTP catabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay 18.43 352.89 0.31 0.76 0.81 -4.62
209549_s_at 209549_s_at BC001121 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001121.1 /DEF=Homo sapiens, Similar to deoxyguanosine kinase, clone MGC:2111, mRNA, complete cds. /FEA=mRNA /PROD=Similar to deoxyguanosine kinase /DB_XREF=gi:12654572 /UG=Hs.326494 Homo sapiens, Similar to deoxyguanosine kinase, clone MGC:2111, mRNA, complete cds /FL=gb:BC001121.1 BC001121 deoxyguanosine kinase DGUOK 1716 NM_001929 /// NM_080915 /// NM_080916 /// NM_080917 /// NM_080918 /// XM_005264173 /// XM_005264174 /// XR_244926 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008617 // guanosine metabolic process // traceable author statement /// 0009157 // deoxyribonucleoside monophosphate biosynthetic process // inferred from direct assay /// 0009157 // deoxyribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009157 // deoxyribonucleoside monophosphate biosynthetic process // traceable author statement /// 0009165 // nucleotide biosynthetic process // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0043101 // purine-containing compound salvage // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0046070 // dGTP metabolic process // inferred from electronic annotation /// 0046122 // purine deoxyribonucleoside metabolic process // inferred from direct assay /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // traceable author statement /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004138 // deoxyguanosine kinase activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019206 // nucleoside kinase activity // not recorded 8.95 315.70 0.31 0.76 0.81 -4.62
213654_at 213654_at R60550 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:R60550 /FEA=EST /DB_XREF=gi:831245 /DB_XREF=est:yh14b04.s1 /CLONE=IMAGE:37736 /UG=Hs.26782 PCAF associated factor 65 beta /FL=gb:AF069736.1 gb:NM_014409.1 R60550 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa TAF5L 27097 NM_001025247 /// NM_014409 /// XM_005273099 /// XM_005273100 /// XM_005273101 0006325 // chromatin organization // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0043966 // histone H3 acetylation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0030914 // STAGA complex // inferred from direct assay /// 0033276 // transcription factor TFTC complex // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation -12.30 167.03 -0.31 0.76 0.81 -4.62
215823_x_at 215823_x_at U64661 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U64661 /DEF=Human poly(A)-binding protein processed pseudogene3 /FEA=mRNA /DB_XREF=gi:1519214 /UG=Hs.283767 poly(A)-binding protein, cytoplasmic, pseudogene 3 U64661 poly(A) binding protein, cytoplasmic 1 /// ring finger protein, LIM domain interacting PABPC1 /// RLIM 26986 /// 51132 NM_002568 /// NM_016120 /// NM_183353 /// XM_005250861 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006378 // mRNA polyadenylation // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0031047 // gene silencing by RNA // inferred from sequence or structural similarity /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045727 // positive regulation of translation // traceable author statement /// 0045892 // negative regulation of transcription, DNA-templated // non-traceable author statement /// 0048255 // mRNA stabilization // traceable author statement /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // inferred from sequence or structural similarity /// 0060816 // random inactivation of X chromosome // inferred from direct assay /// 1900153 // positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from sequence or structural similarity /// 2000623 // negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0017053 // transcriptional repressor complex // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008143 // poly(A) binding // inferred from direct assay /// 0008143 // poly(A) binding // traceable author statement /// 0008266 // poly(U) RNA binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008494 // translation activator activity // traceable author statement /// 0016874 // ligase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 44.22 1512.11 0.31 0.77 0.81 -4.62
214953_s_at 214953_s_at X06989 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:X06989.1 /DEF=Human mRNA for amyloid A4(751) protein. /FEA=mRNA /DB_XREF=gi:28720 /UG=Hs.177486 amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) X06989 amyloid beta (A4) precursor protein APP 351 NM_000484 /// NM_001136016 /// NM_001136129 /// NM_001136130 /// NM_001136131 /// NM_001204301 /// NM_001204302 /// NM_001204303 /// NM_201413 /// NM_201414 0000085 // mitotic G2 phase // inferred from sequence or structural similarity /// 0001967 // suckling behavior // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006378 // mRNA polyadenylation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0007617 // mating behavior // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0008088 // axon cargo transport // inferred from sequence or structural similarity /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from sequence or structural similarity /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0016199 // axon midline choice point recognition // inferred from sequence or structural similarity /// 0016322 // neuron remodeling // inferred from sequence or structural similarity /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from sequence or structural similarity /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048669 // collateral sprouting in absence of injury // inferred from sequence or structural similarity /// 0050803 // regulation of synapse structure and activity // inferred from sequence or structural similarity /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051124 // synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from mutant phenotype /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0030424 // axon // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0051233 // spindle midzone // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from sequence or structural similarity /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation /// 0051425 // PTB domain binding // inferred from physical interaction /// 0070851 // growth factor receptor binding // inferred from electronic annotation -148.15 1335.55 -0.31 0.77 0.81 -4.62
216242_x_at 216242_x_at AW402635 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW402635 /FEA=EST /DB_XREF=gi:6921341 /DB_XREF=est:UI-HF-BK0-aav-a-09-0-UI.r1 /CLONE=IMAGE:3055001 /UG=Hs.80475 polymerase (RNA) II (DNA directed) polypeptide J (13.3kD) AW402635 polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa /// polymerase (RNA) II (DNA directed) polypeptide J2 /// polymerase (RNA) II (DNA directed) polypeptide J3 /// polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene /// uroplakin 3B-like POLR2J /// POLR2J2 /// POLR2J3 /// POLR2J4 /// UPK3BL 5439 /// 84820 /// 246721 /// 548644 /// 100134938 NM_001015884 /// NM_001097615 /// NM_001114403 /// NM_006234 /// NM_032734 /// NM_032958 /// NM_032959 /// NM_145325 /// NR_003655 /// XM_005250452 /// XM_006716032 /// XM_006716033 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0001055 // RNA polymerase II activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // traceable author statement /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030275 // LRR domain binding // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation 7.52 175.94 0.31 0.77 0.81 -4.62
202082_s_at 202082_s_at AV748469 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV748469 /FEA=EST /DB_XREF=gi:10906317 /DB_XREF=est:AV748469 /CLONE=NPCAXA07 /UG=Hs.75232 SEC14 (S. cerevisiae)-like 1 /FL=gb:D67029.1 gb:NM_003003.1 AV748469 SEC14-like 1 (S. cerevisiae) SEC14L1 6397 NM_001039573 /// NM_001143998 /// NM_001143999 /// NM_001144001 /// NM_001204408 /// NM_001204410 /// NM_003003 0006810 // transport // inferred from electronic annotation 0005794 // Golgi apparatus // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 13.25 479.20 0.31 0.77 0.81 -4.62
202243_s_at 202243_s_at NM_002796 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002796.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, beta type, 4 (PSMB4), mRNA. /FEA=mRNA /GEN=PSMB4 /PROD=proteasome (prosome, macropain) subunit, betatype, 4 /DB_XREF=gi:4506198 /UG=Hs.89545 proteasome (prosome, macropain) subunit, beta type, 4 /FL=gb:BC000331.1 gb:NM_002796.1 gb:D26600.1 NM_002796 proteasome (prosome, macropain) subunit, beta type, 4 PSMB4 5692 NM_002796 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -20.10 582.95 -0.31 0.77 0.81 -4.62
212589_at 212589_at AI753792 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI753792 /FEA=EST /DB_XREF=gi:5132144 /DB_XREF=est:cr16f06.x2 /CLONE=HBMSC_cr16f06 /UG=Hs.206097 oncogene TC21 AI753792 related RAS viral (r-ras) oncogene homolog 2 RRAS2 22800 NM_001102669 /// NM_001177314 /// NM_001177315 /// NM_012250 0001649 // osteoblast differentiation // inferred from direct assay /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation -5.22 196.16 -0.31 0.77 0.81 -4.62
65588_at 65588_at AA827892 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA827892:od08e04.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-1367358 /clone_end=3' /gb=AA827892 /gi=2900255 /ug=Hs.239018 /len=622 AA827892 small nucleolar RNA host gene 17 (non-protein coding) SNHG17 388796 NR_015366 /// NR_027241 -6.20 237.90 -0.31 0.77 0.81 -4.62
210559_s_at 210559_s_at D88357 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D88357.1 /DEF=Homo sapiens mRNA for CDC2 delta T, complete cds. /FEA=mRNA /PROD=CDC2 delta T /DB_XREF=gi:3126638 /UG=Hs.184572 cell division cycle 2, G1 to S and G2 to M /FL=gb:D88357.1 D88357 cyclin-dependent kinase 1 CDK1 983 NM_001130829 /// NM_001170406 /// NM_001170407 /// NM_001786 /// NM_033379 /// XM_005270303 /// XM_006718082 /// XM_006718083 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000083 // regulation of transcription involved in G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000165 // MAPK cascade // traceable author statement /// 0000186 // activation of MAPKK activity // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0000226 // microtubule cytoskeleton organization // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007095 // mitotic G2 DNA damage checkpoint // inferred from electronic annotation /// 0007098 // centrosome cycle // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007344 // pronuclear fusion // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007569 // cell aging // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009636 // response to toxic substance // inferred from electronic annotation /// 0010243 // response to organonitrogen compound // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0014038 // regulation of Schwann cell differentiation // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0014075 // response to amine // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016477 // cell migration // traceable author statement /// 0016572 // histone phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0034501 // protein localization to kinetochore // inferred from direct assay /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045995 // regulation of embryonic development // traceable author statement /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048678 // response to axon injury // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072686 // mitotic spindle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein serine/threonine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0035173 // histone kinase activity // inferred from electronic annotation 6.95 244.57 0.30 0.77 0.81 -4.62
203823_at 203823_at NM_021106 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_021106.1 /DEF=Homo sapiens regulator of G-protein signalling 3 (RGS3), mRNA. /FEA=mRNA /GEN=RGS3 /PROD=regulator of G-protein signalling 3 /DB_XREF=gi:10864074 /UG=Hs.82294 regulator of G-protein signalling 3 /FL=gb:NM_021106.1 gb:U27655.1 NM_021106 regulator of G-protein signaling 3 RGS3 5998 NM_001276260 /// NM_001276261 /// NM_001276262 /// NM_001282922 /// NM_001282923 /// NM_017790 /// NM_130795 /// NM_134427 /// NM_144488 /// NM_144489 /// XM_006717219 /// XM_006717220 /// XM_006717221 /// XM_006717222 /// XM_006717223 /// XM_006717224 /// XM_006717225 /// XM_006717226 /// XM_006717227 /// XM_006717228 /// XM_006717229 /// XM_006717230 0000188 // inactivation of MAPK activity // traceable author statement /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // not recorded /// 0043547 // positive regulation of GTPase activity // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation 15.55 658.98 0.30 0.77 0.81 -4.62
209117_at 209117_at U79458 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U79458.1 /DEF=Human WW domain binding protein-2 mRNA, complete cds. /FEA=mRNA /PROD=WW domain binding protein-2 /DB_XREF=gi:4205085 /UG=Hs.231840 WW domain binding protein 2 /FL=gb:U79458.1 U79458 WW domain binding protein 2 WBP2 23558 NM_012478 0045184 // establishment of protein localization // inferred from mutant phenotype /// 0045815 // positive regulation of gene expression, epigenetic // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0071391 // cellular response to estrogen stimulus // inferred from mutant phenotype /// 0071442 // positive regulation of histone H3-K14 acetylation // inferred from mutant phenotype 0000790 // nuclear chromatin // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from mutant phenotype /// 0001105 // RNA polymerase II transcription coactivator activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0031490 // chromatin DNA binding // inferred from mutant phenotype -8.80 254.70 -0.30 0.77 0.82 -4.62
210510_s_at 210510_s_at AF145712 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF145712.1 /DEF=Homo sapiens soluble neuropilin-1 mRNA, complete cds. /FEA=mRNA /PROD=soluble neuropilin-1 /DB_XREF=gi:7271464 /UG=Hs.69285 neuropilin 1 /FL=gb:AF145712.1 AF145712 neuropilin 1 NRP1 8829 NM_001024628 /// NM_001024629 /// NM_001244972 /// NM_001244973 /// NM_003873 /// NR_045259 /// XM_006717521 /// XM_006717522 /// XM_006717523 /// XM_006717524 /// XM_006717525 /// XM_006717526 0001525 // angiogenesis // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // traceable author statement /// 0002040 // sprouting angiogenesis // inferred from sequence or structural similarity /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // traceable author statement /// 0014911 // positive regulation of smooth muscle cell migration // traceable author statement /// 0016358 // dendrite development // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0021636 // trigeminal nerve morphogenesis // inferred from electronic annotation /// 0021675 // nerve development // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030517 // negative regulation of axon extension // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 0035729 // cellular response to hepatocyte growth factor stimulus // inferred from mutant phenotype /// 0035767 // endothelial cell chemotaxis // inferred from mutant phenotype /// 0035924 // cellular response to vascular endothelial growth factor stimulus // inferred from sequence or structural similarity /// 0038084 // vascular endothelial growth factor signaling pathway // inferred from electronic annotation /// 0038190 // VEGF-activated neuropilin signaling pathway // inferred from sequence or structural similarity /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // traceable author statement /// 0048012 // hepatocyte growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048485 // sympathetic nervous system development // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048841 // regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0048846 // axon extension involved in axon guidance // inferred from sequence or structural similarity /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0050918 // positive chemotaxis // inferred from sequence or structural similarity /// 0060301 // positive regulation of cytokine activity // traceable author statement /// 0060385 // axonogenesis involved in innervation // inferred from sequence or structural similarity /// 0060627 // regulation of vesicle-mediated transport // traceable author statement /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // inferred from electronic annotation /// 0060978 // angiogenesis involved in coronary vascular morphogenesis // inferred from sequence or structural similarity /// 0061299 // retina vasculature morphogenesis in camera-type eye // inferred from sequence or structural similarity /// 0061549 // sympathetic ganglion development // inferred from sequence or structural similarity /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0071526 // semaphorin-plexin signaling pathway // non-traceable author statement /// 0071679 // commissural neuron axon guidance // inferred from sequence or structural similarity /// 0090259 // regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 0097102 // endothelial tip cell fate specification // inferred from sequence or structural similarity /// 0097490 // sympathetic neuron projection extension // inferred from sequence or structural similarity /// 0097491 // sympathetic neuron projection guidance // inferred from sequence or structural similarity /// 1901166 // neural crest cell migration involved in autonomic nervous system development // inferred from sequence or structural similarity /// 1902285 // semaphorin-plexin signaling pathway involved in neuron projection guidance // inferred from sequence or structural similarity /// 1902336 // positive regulation of retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 1902946 // protein localization to early endosome // inferred from sequence or structural similarity /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from electronic annotation 0002116 // semaphorin receptor complex // non-traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0005883 // neurofilament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030424 // axon // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043235 // receptor complex // traceable author statement /// 0097443 // sorting endosome // inferred from sequence or structural similarity 0005021 // vascular endothelial growth factor-activated receptor activity // inferred from sequence or structural similarity /// 0005021 // vascular endothelial growth factor-activated receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0015026 // coreceptor activity // traceable author statement /// 0017154 // semaphorin receptor activity // non-traceable author statement /// 0019838 // growth factor binding // inferred from physical interaction /// 0019838 // growth factor binding // traceable author statement /// 0019955 // cytokine binding // non-traceable author statement /// 0038085 // vascular endothelial growth factor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 4.33 142.54 0.30 0.77 0.82 -4.62
217846_at 217846_at NM_005051 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005051.1 /DEF=Homo sapiens glutaminyl-tRNA synthetase (QARS), mRNA. /FEA=mRNA /GEN=QARS /PROD=glutaminyl-tRNA synthetase /DB_XREF=gi:4826959 /UG=Hs.79322 glutaminyl-tRNA synthetase /FL=gb:AF130067.1 gb:BC000394.1 gb:BC001772.1 gb:NM_005051.1 NM_005051 microRNA 6890 /// glutaminyl-tRNA synthetase MIR6890 /// QARS 5859 /// 102465536 NM_001272073 /// NM_005051 /// NR_073590 /// NR_106950 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // traceable author statement /// 0006425 // glutaminyl-tRNA aminoacylation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004819 // glutamine-tRNA ligase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation -13.73 568.74 -0.30 0.77 0.82 -4.62
212166_at 212166_at H38643 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:H38643 /FEA=EST /DB_XREF=gi:908142 /DB_XREF=est:yp62f02.s1 /CLONE=IMAGE:192027 /UG=Hs.172685 RAN binding protein 16 H38643 exportin 7 XPO7 23039 NM_001100161 /// NM_001100162 /// NM_015024 0006611 // protein export from nucleus // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005643 // nuclear pore // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005049 // nuclear export signal receptor activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // inferred from electronic annotation 6.22 179.36 0.30 0.77 0.82 -4.62
211343_s_at 211343_s_at M33653 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M33653.1 /DEF=Human (clones HT-125,133) alpha-2 type IV collagen (COL4A2) mRNA, complete cds. /FEA=mRNA /GEN=COL4A2 /PROD=alpha-2 type IV collagen /DB_XREF=gi:180828 /UG=Hs.211933 collagen, type XIII, alpha 1 /FL=gb:M33653.1 M33653 collagen, type XIII, alpha 1 COL13A1 1305 NM_001130103 /// NM_005203 /// NM_080798 /// NM_080799 /// NM_080800 /// NM_080801 /// NM_080802 /// NM_080803 /// NM_080804 /// NM_080805 /// NM_080806 /// NM_080807 /// NM_080808 /// NM_080809 /// NM_080810 /// NM_080811 /// NM_080812 /// NM_080813 /// NM_080814 /// NM_080815 /// XM_006717632 0001503 // ossification // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // inferred from sequence or structural similarity /// 0001958 // endochondral ossification // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from physical interaction /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016337 // single organismal cell-cell adhesion // inferred from expression pattern /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005600 // collagen type XIII trimer // traceable author statement /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from direct assay -9.75 446.40 -0.30 0.77 0.82 -4.62
209058_at 209058_at AB002282 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AB002282.1 /DEF=Homo sapiens mRNA for hMBF1alpha, complete cds. /FEA=mRNA /PROD=hMBF1alpha /DB_XREF=gi:6526354 /UG=Hs.174050 endothelial differentiation-related factor 1 /FL=gb:NM_003792.1 gb:AB002282.1 AB002282 endothelial differentiation-related factor 1 EDF1 8721 NM_001281297 /// NM_001281298 /// NM_001281299 /// NM_003792 /// NM_153200 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043388 // positive regulation of DNA binding // inferred from direct assay /// 0045446 // endothelial cell differentiation // traceable author statement /// 0045893 // positive regulation of transcription, DNA-templated // traceable author statement 0005622 // intracellular // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // non-traceable author statement /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -5.60 295.27 -0.30 0.77 0.82 -4.62
202595_s_at 202595_s_at AF161461 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF161461.1 /DEF=Homo sapiens HSPC112 mRNA, complete cds. /FEA=mRNA /PROD=HSPC112 /DB_XREF=gi:6841445 /UG=Hs.11000 leptin receptor overlapping transcript-like 1 /FL=gb:BC000642.1 gb:AF063605.1 gb:AF161461.1 gb:NM_015344.1 AF161461 leptin receptor overlapping transcript-like 1 LEPROTL1 23484 NM_001128208 /// NM_015344 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation -5.35 165.35 -0.30 0.77 0.82 -4.62
217761_at 217761_at NM_018269 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018269.1 /DEF=Homo sapiens hypothetical protein FLJ10913 (FLJ10913), mRNA. /FEA=mRNA /GEN=FLJ10913 /PROD=hypothetical protein FLJ10913 /DB_XREF=gi:8922761 /UG=Hs.64322 hypothetical protein FLJ10913 /FL=gb:BC001467.1 gb:NM_018269.1 NM_018269 acireductone dioxygenase 1 ADI1 55256 NM_018269 /// XM_005264696 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006595 // polyamine metabolic process // traceable author statement /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from direct assay /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation /// 0019509 // L-methionine salvage from methylthioadenosine // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0010309 // acireductone dioxygenase [iron(II)-requiring] activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 7.78 230.39 0.30 0.77 0.82 -4.62
202282_at 202282_at NM_004493 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004493.1 /DEF=Homo sapiens hydroxyacyl-Coenzyme A dehydrogenase, type II (HADH2), mRNA. /FEA=mRNA /GEN=HADH2 /PROD=hydroxyacyl-Coenzyme A dehydrogenase, type II /DB_XREF=gi:4758503 /UG=Hs.171280 hydroxyacyl-Coenzyme A dehydrogenase, type II /FL=gb:BC000372.1 gb:BC000829.1 gb:U73514.1 gb:U96132.1 gb:AF035555.1 gb:AF069134.1 gb:NM_004493.1 NM_004493 hydroxysteroid (17-beta) dehydrogenase 10 HSD17B10 3028 NM_001037811 /// NM_004493 0006629 // lipid metabolic process // traceable author statement /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched-chain amino acid catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008709 // cholate 7-alpha-dehydrogenase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0030283 // testosterone dehydrogenase [NAD(P)] activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0047015 // 3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity // inferred from electronic annotation -6.53 224.86 -0.30 0.78 0.82 -4.62
221767_x_at 221767_x_at AA515560 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA515560 /FEA=EST /DB_XREF=gi:2255160 /DB_XREF=est:ni42c09.s1 /CLONE=IMAGE:979504 /UG=Hs.283473 hypothetical protein PRO2900 AA515560 high density lipoprotein binding protein HDLBP 3069 NM_001243900 /// NM_005336 /// NM_203346 /// XM_005247000 /// XM_005247001 /// XM_005247002 /// XM_005247003 /// XM_006712475 /// XM_006712476 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay -8.00 416.48 -0.30 0.78 0.82 -4.62
203166_at 203166_at NM_006324 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006324.1 /DEF=Homo sapiens craniofacial development protein 1 (CFDP1), mRNA. /FEA=mRNA /GEN=CFDP1 /PROD=craniofacial development protein 1 /DB_XREF=gi:5453566 /UG=Hs.296460 craniofacial development protein 1 /FL=gb:BC000991.2 gb:AB009285.1 gb:NM_006324.1 NM_006324 craniofacial development protein 1 CFDP1 10428 NM_006324 0007155 // cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 2000270 // negative regulation of fibroblast apoptotic process // inferred from electronic annotation -4.72 159.59 -0.30 0.78 0.82 -4.62
37965_at 37965_at AA181053 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AA181053:zp66g11.s1 Homo sapiens cDNA, 3 end /clone=IMAGE-625220 /clone_end=3' /gb=AA181053 /gi=1764536 /ug=Hs.8836 /len=626 AA181053 parvin, beta PARVB 29780 NM_001003828 /// NM_001243385 /// NM_001243386 /// NM_013327 /// XM_005261593 /// XM_005261594 /// XM_005261595 /// XM_005261596 /// XM_006724236 0007155 // cell adhesion // inferred from electronic annotation /// 0030031 // cell projection assembly // inferred from mutant phenotype /// 0030032 // lamellipodium assembly // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0034329 // cell junction assembly // traceable author statement /// 0071963 // establishment or maintenance of cell polarity regulating cell shape // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -15.88 337.84 -0.29 0.78 0.82 -4.62
218659_at 218659_at NM_018263 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018263.1 /DEF=Homo sapiens hypothetical protein FLJ10898 (FLJ10898), mRNA. /FEA=mRNA /GEN=FLJ10898 /PROD=hypothetical protein FLJ10898 /DB_XREF=gi:8922749 /UG=Hs.13801 KIAA1685 protein /FL=gb:NM_018263.1 NM_018263 additional sex combs like transcriptional regulator 2 ASXL2 55252 NM_018263 /// XM_006712039 /// XM_006712040 0003007 // heart morphogenesis // inferred from electronic annotation /// 0006323 // DNA packaging // traceable author statement /// 0006325 // chromatin organization // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006473 // protein acetylation // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from direct assay /// 0030099 // myeloid cell differentiation // inferred from direct assay /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035360 // positive regulation of peroxisome proliferator activated receptor signaling pathway // inferred from direct assay /// 0035909 // aorta morphogenesis // inferred from electronic annotation /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from direct assay /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0090398 // cellular senescence // inferred from mutant phenotype 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016605 // PML body // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -22.63 327.06 -0.29 0.78 0.82 -4.62
200722_s_at 200722_s_at BG258784 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG258784 /FEA=EST /DB_XREF=gi:12768600 /DB_XREF=est:602378049F1 /CLONE=IMAGE:4508820 /UG=Hs.278672 membrane component, chromosome 11, surface marker 1 /FL=gb:BC001731.1 gb:NM_005898.1 BG258784 cell cycle associated protein 1 CAPRIN1 4076 NM_005898 /// NM_203364 0017148 // negative regulation of translation // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from sequence or structural similarity /// 0061003 // positive regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0010494 // cytoplasmic stress granule // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003723 // RNA binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay -16.18 511.06 -0.29 0.78 0.82 -4.62
221488_s_at 221488_s_at AF230924 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF230924.1 /DEF=Homo sapiens brain acetylcholinesterase putative membrane anchor mRNA, complete cds. /FEA=mRNA /PROD=brain acetylcholinesterase putative membraneanchor /DB_XREF=gi:7341254 /UG=Hs.107187 divalent cation tolerant protein CUTA /FL=gb:AF230924.1 AF230924 cutA divalent cation tolerance homolog (E. coli) CUTA 51596 NM_001014433 /// NM_001014837 /// NM_001014838 /// NM_001014840 /// NM_015921 /// XM_006715108 /// XM_006726096 0008104 // protein localization // inferred from direct assay /// 0010038 // response to metal ion // inferred from electronic annotation 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from physical interaction 9.57 302.09 0.29 0.78 0.82 -4.62
202845_s_at 202845_s_at NM_006788 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006788.1 /DEF=Homo sapiens ralA binding protein 1 (RALBP1), mRNA. /FEA=mRNA /GEN=RALBP1 /PROD=ralA binding protein 1 /DB_XREF=gi:5803144 /UG=Hs.75447 ralA binding protein 1 /FL=gb:NM_006788.1 gb:L42542.1 NM_006788 ralA binding protein 1 RALBP1 10928 NM_006788 /// XM_006722295 /// XM_006722296 0006200 // ATP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from direct assay /// 0006935 // chemotaxis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from physical interaction /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0032855 // positive regulation of Rac GTPase activity // inferred from direct assay /// 0032855 // positive regulation of Rac GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from direct assay /// 0043089 // positive regulation of Cdc42 GTPase activity // inferred from direct assay /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay 0005096 // GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016887 // ATPase activity // inferred from direct assay /// 0017160 // Ral GTPase binding // inferred from physical interaction /// 0030675 // Rac GTPase activator activity // inferred from direct assay /// 0043492 // ATPase activity, coupled to movement of substances // inferred from direct assay /// 0048365 // Rac GTPase binding // inferred from physical interaction 9.82 265.26 0.29 0.78 0.82 -4.62
219590_x_at 219590_x_at NM_015958 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_015958.1 /DEF=Homo sapiens CGI-30 protein (LOC51611), mRNA. /FEA=mRNA /GEN=LOC51611 /PROD=CGI-30 protein /DB_XREF=gi:7706271 /UG=Hs.19978 CGI-30 protein /FL=gb:AF132964.1 gb:NM_015958.1 NM_015958 diphthamide biosynthesis 5 DPH5 51611 NM_001077394 /// NM_001077395 /// NM_015958 /// XM_005270938 /// XM_005270939 /// XM_005270941 /// XM_006710683 0008152 // metabolic process // inferred from electronic annotation /// 0017183 // peptidyl-diphthamide biosynthetic process from peptidyl-histidine // inferred from electronic annotation /// 0017183 // peptidyl-diphthamide biosynthetic process from peptidyl-histidine // non-traceable author statement /// 0032259 // methylation // inferred from electronic annotation 0004164 // diphthine synthase activity // non-traceable author statement /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation -7.35 242.38 -0.29 0.78 0.82 -4.62
208949_s_at 208949_s_at BC001120 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001120.1 /DEF=Homo sapiens, lectin, galactoside-binding, soluble, 3 (galectin 3), clone MGC:2058, mRNA, complete cds. /FEA=mRNA /PROD=lectin, galactoside-binding, soluble, 3(galectin 3) /DB_XREF=gi:12654570 /UG=Hs.621 lectin, galactoside-binding, soluble, 3 (galectin 3) /FL=gb:M35368.1 gb:BC001120.1 gb:M57710.1 gb:M36682.1 gb:AB006780.1 gb:NM_002306.1 BC001120 lectin, galactoside-binding, soluble, 3 LGALS3 3958 NM_001177388 /// NM_002306 /// NR_003225 0001501 // skeletal system development // inferred from electronic annotation /// 0002376 // immune system process // inferred from electronic annotation /// 0002548 // monocyte chemotaxis // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0042129 // regulation of T cell proliferation // inferred from mutant phenotype /// 0045087 // innate immune response // traceable author statement /// 0045806 // negative regulation of endocytosis // inferred from direct assay /// 0048245 // eosinophil chemotaxis // inferred from direct assay /// 0048246 // macrophage chemotaxis // inferred from direct assay /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050918 // positive chemotaxis // inferred from direct assay /// 0070232 // regulation of T cell apoptotic process // inferred from direct assay /// 0071674 // mononuclear cell migration // inferred from direct assay /// 0071677 // positive regulation of mononuclear cell migration // inferred from direct assay /// 0090280 // positive regulation of calcium ion import // inferred from direct assay /// 1902041 // regulation of extrinsic apoptotic signaling pathway via death domain receptors // inferred from mutant phenotype /// 2000521 // negative regulation of immunological synapse formation // inferred from sequence or structural similarity /// 2001189 // negative regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell // inferred from sequence or structural similarity /// 2001237 // negative regulation of extrinsic apoptotic signaling pathway // inferred from direct assay 0001772 // immunological synapse // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019863 // IgE binding // inferred from direct assay /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0042056 // chemoattractant activity // inferred from direct assay /// 0043236 // laminin binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -8.48 326.71 -0.29 0.78 0.82 -4.62
203190_at 203190_at NM_002496 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002496.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD) (NADH-coenzyme Q reductase) (NDUFS8), mRNA. /FEA=mRNA /GEN=NDUFS8 /PROD=NADH dehydrogenase (ubiquinone) Fe-S protein 8(23kD) (NADH-coenzyme Q reductase) /DB_XREF=gi:4505370 /UG=Hs.90443 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD) (NADH-coenzyme Q reductase) /FL=gb:U65579.1 gb:NM_002496.1 NM_002496 microRNA 4691 /// microRNA 7113 /// NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) MIR4691 /// MIR7113 /// NDUFS8 4728 /// 100616403 /// 102465669 NM_002496 /// NR_039840 /// NR_106963 /// XM_005274013 /// XM_005274014 /// XM_005274015 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0006979 // response to oxidative stress // inferred from direct assay /// 0022904 // respiratory electron transport chain // traceable author statement /// 0032981 // mitochondrial respiratory chain complex I assembly // inferred from mutant phenotype /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // inferred from mutant phenotype /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from mutant phenotype /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from mutant phenotype /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NAD(P)H // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 5.38 202.86 0.29 0.78 0.82 -4.62
1598_g_at 1598_g_at L13720 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank L13720 /FEATURE= /DEFINITION=HUMGAS Homo sapiens growth-arrest-specific protein (gas) mRNA, complete cds L13720 growth arrest-specific 6 GAS6 2621 NM_000820 /// NM_001143945 /// NM_001143946 0001764 // neuron migration // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0002576 // platelet degranulation // traceable author statement /// 0003104 // positive regulation of glomerular filtration // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006508 // proteolysis // traceable author statement /// 0006909 // phagocytosis // inferred from direct assay /// 0007050 // cell cycle arrest // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010804 // negative regulation of tumor necrosis factor-mediated signaling pathway // inferred from direct assay /// 0010934 // macrophage cytokine production // inferred from electronic annotation /// 0016477 // cell migration // traceable author statement /// 0017187 // peptidyl-glutamic acid carboxylation // traceable author statement /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0019064 // fusion of virus membrane with host plasma membrane // inferred from direct assay /// 0019079 // viral genome replication // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0031100 // organ regeneration // inferred from electronic annotation /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0032008 // positive regulation of TOR signaling // inferred from sequence or structural similarity /// 0032148 // activation of protein kinase B activity // inferred from sequence or structural similarity /// 0032689 // negative regulation of interferon-gamma production // inferred from direct assay /// 0032715 // negative regulation of interleukin-6 production // inferred from direct assay /// 0032720 // negative regulation of tumor necrosis factor production // inferred from direct assay /// 0032825 // positive regulation of natural killer cell differentiation // inferred from direct assay /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from direct assay /// 0033159 // negative regulation of protein import into nucleus, translocation // inferred from direct assay /// 0035457 // cellular response to interferon-alpha // inferred from direct assay /// 0035690 // cellular response to drug // inferred from direct assay /// 0035754 // B cell chemotaxis // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043277 // apoptotic cell clearance // inferred from direct assay /// 0043433 // negative regulation of sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043491 // protein kinase B signaling // inferred from direct assay /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0046718 // viral entry into host cell // inferred from direct assay /// 0046813 // receptor-mediated virion attachment to host cell // inferred from direct assay /// 0046827 // positive regulation of protein export from nucleus // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0050711 // negative regulation of interleukin-1 secretion // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from direct assay /// 0050900 // leukocyte migration // traceable author statement /// 0051897 // positive regulation of protein kinase B signaling // inferred from direct assay /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from direct assay /// 0070168 // negative regulation of biomineral tissue development // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070527 // platelet aggregation // traceable author statement /// 0070588 // calcium ion transmembrane transport // inferred from direct assay /// 0071307 // cellular response to vitamin K // inferred from direct assay /// 0071333 // cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from direct assay /// 0085029 // extracellular matrix assembly // inferred from sequence or structural similarity /// 0097028 // dendritic cell differentiation // inferred from expression pattern /// 0097241 // hematopoietic stem cell migration to bone marrow // inferred from direct assay /// 1900142 // negative regulation of oligodendrocyte apoptotic process // inferred from direct assay /// 1900165 // negative regulation of interleukin-6 secretion // inferred from direct assay /// 2000270 // negative regulation of fibroblast apoptotic process // inferred from direct assay /// 2000352 // negative regulation of endothelial cell apoptotic process // inferred from direct assay /// 2000510 // positive regulation of dendritic cell chemotaxis // inferred from direct assay /// 2000533 // negative regulation of renal albumin absorption // inferred from sequence or structural similarity /// 2000669 // negative regulation of dendritic cell apoptotic process // inferred from direct assay 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005796 // Golgi lumen // traceable author statement /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001786 // phosphatidylserine binding // inferred from direct assay /// 0005102 // receptor binding // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030296 // protein tyrosine kinase activator activity // inferred from direct assay /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048018 // receptor agonist activity // inferred from direct assay /// 0060090 // binding, bridging // inferred from direct assay -5.40 339.88 -0.29 0.78 0.82 -4.62
201740_at 201740_at NM_004551 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004551.1 /DEF=Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 3 (30kD) (NADH-coenzyme Q reductase) (NDUFS3), mRNA. /FEA=mRNA /GEN=NDUFS3 /PROD=NADH dehydrogenase (ubiquinone) Fe-S protein 3(30kD) (NADH-coenzyme Q reductase) /DB_XREF=gi:4758787 /UG=Hs.5273 NADH dehydrogenase (ubiquinone) Fe-S protein 3 (30kD) (NADH-coenzyme Q reductase) /FL=gb:BC000617.1 gb:AF067139.1 gb:NM_004551.1 gb:AF100743.1 NM_004551 NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) NDUFS3 4722 NM_004551 0006120 // mitochondrial electron transport, NADH to ubiquinone // non-traceable author statement /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022904 // respiratory electron transport chain // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0072593 // reactive oxygen species metabolic process // inferred from mutant phenotype /// 2001243 // negative regulation of intrinsic apoptotic signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005747 // mitochondrial respiratory chain complex I // inferred from direct assay /// 0005747 // mitochondrial respiratory chain complex I // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008137 // NADH dehydrogenase (ubiquinone) activity // non-traceable author statement /// 0009055 // electron carrier activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NAD(P)H // inferred from electronic annotation -15.95 395.52 -0.29 0.78 0.82 -4.62
204427_s_at 204427_s_at NM_006815 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006815.1 /DEF=Homo sapiens coated vesicle membrane protein (RNP24), mRNA. /FEA=mRNA /GEN=RNP24 /PROD=coated vesicle membrane protein /DB_XREF=gi:5803148 /UG=Hs.323378 coated vesicle membrane protein /FL=gb:NM_006815.1 NM_006815 transmembrane emp24 domain trafficking protein 2 TMED2 10959 NM_006815 /// XM_005253544 0001893 // maternal placenta development // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from direct assay /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0034260 // negative regulation of GTPase activity // inferred from direct assay /// 0035459 // cargo loading into vesicle // traceable author statement /// 0048205 // COPI coating of Golgi vesicle // traceable author statement /// 0048208 // COPII vesicle coating // traceable author statement /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0072661 // protein targeting to plasma membrane // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0030137 // COPI-coated vesicle // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 17.38 398.96 0.29 0.78 0.82 -4.62
221474_at 221474_at U26162 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U26162.1 /DEF=Human myosin regulatory light chain mRNA, complete cds. /FEA=mRNA /PROD=myosin regulatory light chain /DB_XREF=gi:829622 /UG=Hs.180224 death-associated protein 6 /FL=gb:BC004994.1 gb:D50372.1 gb:U26162.1 U26162 myosin, light chain 12B, regulatory MYL12B 103910 NM_001144944 /// NM_001144945 /// NM_001144946 /// NM_033546 0006936 // muscle contraction // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0008360 // regulation of cell shape // inferred from electronic annotation 0001725 // stress fiber // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016459 // myosin complex // inferred from electronic annotation /// 0016460 // myosin II complex // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -77.45 1919.05 -0.29 0.78 0.82 -4.62
218998_at 218998_at NM_017832 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017832.1 /DEF=Homo sapiens hypothetical protein FLJ20457 (FLJ20457), mRNA. /FEA=mRNA /GEN=FLJ20457 /PROD=hypothetical protein FLJ20457 /DB_XREF=gi:8923430 /UG=Hs.29276 hypothetical protein FLJ20457 /FL=gb:AF153417.1 gb:NM_017832.1 NM_017832 family with sequence similarity 206, member A FAM206A 54942 NM_017832 0006546 // glycine catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005960 // glycine cleavage complex // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 4.87 84.79 0.29 0.78 0.82 -4.62
200076_s_at 200076_s_at BC006479 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006479.1 /DEF=Homo sapiens, hypothetical protein MGC2749, clone MGC:4376, mRNA, complete cds. /FEA=mRNA /PROD=hypothetical protein MGC2749 /DB_XREF=gi:13623702 /FL=gb:BC006479.1 BC006479 KxDL motif containing 1 KXD1 79036 NM_001171948 /// NM_001171949 /// NM_024069 /// XM_005260073 /// XM_006722883 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity 0031083 // BLOC-1 complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction 5.22 211.31 0.29 0.78 0.82 -4.62
209082_s_at 209082_s_at AF018081 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF018081.1 /DEF=Homo sapiens type XVIII collagen (COL18A1) mRNA, alternatively spliced, long form, complete cds. /FEA=mRNA /GEN=COL18A1 /PROD=type XVIII collagen /DB_XREF=gi:2920534 /UG=Hs.78409 collagen, type XVIII, alpha 1 /FL=gb:NM_030582.1 gb:AF018081.1 gb:AF184060.1 gb:NM_016214.1 AF018081 collagen, type XVIII, alpha 1 COL18A1 80781 NM_030582 /// NM_130444 /// NM_130445 0001525 // angiogenesis // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007601 // visual perception // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0009887 // organ morphogenesis // traceable author statement /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030574 // collagen catabolic process // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptotic process // inferred from electronic annotation /// 0051599 // response to hydrostatic pressure // inferred from electronic annotation /// 2000353 // positive regulation of endothelial cell apoptotic process // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -9.58 463.51 -0.28 0.78 0.83 -4.62
202011_at 202011_at NM_003257 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003257.1 /DEF=Homo sapiens tight junction protein 1 (zona occludens 1) (TJP1), mRNA. /FEA=mRNA /GEN=TJP1 /PROD=tight junction protein 1 (zona occludens 1) /DB_XREF=gi:4507516 /UG=Hs.74614 tight junction protein 1 (zona occludens 1) /FL=gb:L14837.1 gb:NM_003257.1 NM_003257 tight junction protein 1 TJP1 7082 NM_003257 /// NM_175610 /// XM_005254616 /// XM_005254617 /// XM_005254618 /// XM_005254619 /// XM_005254620 /// XM_005254621 /// XM_006720660 /// XM_006720661 /// XM_006725553 /// XM_006725554 /// XM_006725555 /// XM_006725556 /// XM_006725557 /// XM_006725558 /// XM_006725559 /// XM_006725560 0001825 // blastocyst formation // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0007043 // cell-cell junction assembly // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0035329 // hippo signaling // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043116 // negative regulation of vascular permeability // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0071000 // response to magnetism // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 1901350 // cell-cell signaling involved in cell-cell junction organization // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016327 // apicolateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay /// 0043296 // apical junction complex // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0046581 // intercellular canaliculus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 11.97 527.24 0.28 0.79 0.83 -4.62
212020_s_at 212020_s_at AU152107 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AU152107 /FEA=EST /DB_XREF=gi:11013628 /DB_XREF=est:AU152107 /CLONE=NT2RP3000209 /UG=Hs.80976 antigen identified by monoclonal antibody Ki-67 AU152107 marker of proliferation Ki-67 MKI67 4288 NM_001145966 /// NM_002417 /// XM_006717864 0006259 // DNA metabolic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0014070 // response to organic cyclic compound // inferred from electronic annotation /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from electronic annotation /// 0034605 // cellular response to heat // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 6.50 152.75 0.28 0.79 0.83 -4.62
221761_at 221761_at AA628948 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA628948 /FEA=EST /DB_XREF=gi:2541335 /DB_XREF=est:af28f07.s1 /CLONE=IMAGE:1032997 /UG=Hs.90011 adenylosuccinate synthase /FL=gb:NM_001126.1 AA628948 adenylosuccinate synthase ADSS 159 NM_001126 0002376 // immune system process // non-traceable author statement /// 0006144 // purine nucleobase metabolic process // traceable author statement /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006167 // AMP biosynthetic process // inferred from direct assay /// 0006167 // AMP biosynthetic process // non-traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006531 // aspartate metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // traceable author statement /// 0014074 // response to purine-containing compound // inferred from electronic annotation /// 0044208 // 'de novo' AMP biosynthetic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046040 // IMP metabolic process // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0060359 // response to ammonium ion // inferred from electronic annotation /// 0071257 // cellular response to electrical stimulus // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004019 // adenylosuccinate synthase activity // inferred from direct assay /// 0004019 // adenylosuccinate synthase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // non-traceable author statement /// 0016874 // ligase activity // inferred from electronic annotation /// 0042301 // phosphate ion binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation -10.23 434.06 -0.28 0.79 0.83 -4.62
202767_at 202767_at NM_001610 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001610.1 /DEF=Homo sapiens acid phosphatase 2, lysosomal (ACP2), mRNA. /FEA=mRNA /GEN=ACP2 /PROD=lysosomal acid phosphatase 2 precursor /DB_XREF=gi:4557009 /UG=Hs.75589 acid phosphatase 2, lysosomal /FL=gb:BC003160.1 gb:NM_001610.1 NM_001610 acid phosphatase 2, lysosomal ACP2 53 NM_001131064 /// NM_001610 /// XM_005252984 /// XM_005252985 /// XR_242812 0001501 // skeletal system development // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // traceable author statement 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0043202 // lysosomal lumen // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -5.18 133.81 -0.28 0.79 0.83 -4.62
213196_at 213196_at AI924293 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI924293 /FEA=EST /DB_XREF=gi:5660257 /DB_XREF=est:wn55a06.x1 /CLONE=IMAGE:2449330 /UG=Hs.301094 KIAA0326 protein AI924293 zinc finger protein 629 ZNF629 23361 NM_001080417 /// XM_005255222 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // not recorded 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation -5.20 121.90 -0.27 0.79 0.83 -4.62
208864_s_at 208864_s_at AF313911 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF313911.1 /DEF=Homo sapiens thioredoxin mRNA, complete cds. /FEA=mRNA /PROD=thioredoxin /DB_XREF=gi:11345419 /UG=Hs.76136 thioredoxin /FL=gb:AF313911.1 gb:BC003377.1 gb:J04026.1 gb:NM_003329.1 gb:AF276919.1 gb:AY004872.1 AF313911 thioredoxin TXN 7295 NM_001244938 /// NM_003329 /// XM_006717276 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006928 // cellular component movement // traceable author statement /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0009314 // response to radiation // inferred from direct assay /// 0010269 // response to selenium ion // inferred from electronic annotation /// 0014823 // response to activity // inferred from electronic annotation /// 0015949 // nucleobase-containing small molecule interconversion // traceable author statement /// 0016999 // antibiotic metabolic process // inferred from electronic annotation /// 0033158 // regulation of protein import into nucleus, translocation // inferred from direct assay /// 0035690 // cellular response to drug // inferred from electronic annotation /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043388 // positive regulation of DNA binding // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0046826 // negative regulation of protein export from nucleus // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from electronic annotation /// 0055086 // nucleobase-containing small molecule metabolic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from direct assay /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071455 // cellular response to hyperoxia // inferred from electronic annotation /// 0071548 // response to dexamethasone // inferred from electronic annotation /// 0097068 // response to thyroxine // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015037 // peptide disulfide oxidoreductase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 13.03 643.01 0.27 0.79 0.83 -4.62
200693_at 200693_at NM_006826 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006826.1 /DEF=Homo sapiens tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, theta polypeptide (YWHAQ), mRNA. /FEA=mRNA /GEN=YWHAQ /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, theta polypeptide /DB_XREF=gi:5803226 /UG=Hs.74405 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, theta polypeptide /FL=gb:NM_006826.1 NM_006826 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta YWHAQ 10971 NM_006826 0006605 // protein targeting // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0043234 // protein complex // inferred from physical interaction /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction -13.92 1642.06 -0.27 0.79 0.83 -4.62
211779_x_at 211779_x_at BC006155 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006155.1 /DEF=Homo sapiens, clone MGC:13188, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:13188) /DB_XREF=gi:13544040 /FL=gb:BC006155.1 BC006155 adaptor-related protein complex 2, alpha 2 subunit AP2A2 161 NM_001242837 /// NM_012305 /// XM_006718159 /// XM_006718160 /// XR_242779 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // non-traceable author statement /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from sequence or structural similarity 9.33 370.59 0.27 0.79 0.83 -4.62
202380_s_at 202380_s_at NM_005385 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005385.2 /DEF=Homo sapiens natural killer-tumor recognition sequence (NKTR), mRNA. /FEA=mRNA /GEN=NKTR /PROD=natural killer-tumor recognition sequence /DB_XREF=gi:6631099 /UG=Hs.241493 natural killer-tumor recognition sequence /FL=gb:L04288.2 gb:NM_005385.2 NM_005385 natural killer cell triggering receptor NKTR 4820 NM_001012651 /// NM_005385 /// XM_005265173 /// XM_005265174 /// XM_005265176 /// XM_005265178 /// XM_006713171 /// XM_006713172 /// XM_006713173 /// XM_006713174 0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016018 // cyclosporin A binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 5.67 89.71 0.27 0.79 0.83 -4.62
203554_x_at 203554_x_at NM_004219 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004219.2 /DEF=Homo sapiens pituitary tumor-transforming 1 (PTTG1), mRNA. /FEA=mRNA /GEN=PTTG1 /PROD=pituitary tumor-transforming protein 1 /DB_XREF=gi:11038651 /UG=Hs.252587 pituitary tumor-transforming 1 /FL=gb:NM_004219.2 gb:AF095287.1 gb:AF062649.1 gb:AF075242.1 NM_004219 pituitary tumor-transforming 1 PTTG1 9232 NM_001282382 /// NM_001282383 /// NM_004219 0000278 // mitotic cell cycle // traceable author statement /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007283 // spermatogenesis // traceable author statement /// 0010951 // negative regulation of endopeptidase activity // non-traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation -17.53 486.04 -0.27 0.79 0.83 -4.62
201087_at 201087_at NM_002859 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002859.1 /DEF=Homo sapiens paxillin (PXN), mRNA. /FEA=mRNA /GEN=PXN /PROD=paxillin /DB_XREF=gi:4506344 /UG=Hs.102497 paxillin /FL=gb:NM_002859.1 gb:U14588.1 NM_002859 paxillin PXN 5829 NM_001080855 /// NM_001243756 /// NM_002859 /// NM_025157 /// XM_005253910 /// XM_005253912 /// XM_005253913 /// XM_005253914 /// XM_005253915 /// XM_005253916 /// XM_005253917 /// XM_006719531 /// XM_006719532 /// XM_006719533 /// XM_006719534 /// XM_006719535 /// XM_006719536 /// XM_006719537 /// XM_006719538 /// XM_006719539 /// XR_243019 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007172 // signal complex assembly // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0034329 // cell junction assembly // traceable author statement /// 0034614 // cellular response to reactive oxygen species // inferred from expression pattern /// 0048041 // focal adhesion assembly // inferred from electronic annotation /// 0048754 // branching morphogenesis of an epithelial tube // inferred from electronic annotation /// 0060396 // growth hormone receptor signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017166 // vinculin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051435 // BH4 domain binding // inferred from electronic annotation -10.10 462.73 -0.27 0.79 0.83 -4.62
200017_at 200017_at NM_002954 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002954.1 /DEF=Homo sapiens ribosomal protein S27a (RPS27A), mRNA. /FEA=mRNA /GEN=RPS27A /PROD=ribosomal protein S27a /DB_XREF=gi:4506712 /UG=Hs.3297 ribosomal protein S27a /FL=gb:BC001392.1 gb:BC005328.1 gb:NM_002954.1 NM_002954 ribosomal protein S27a RPS27A 6233 NM_001135592 /// NM_001177413 /// NM_002954 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0000187 // activation of MAPK activity // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0005978 // glycogen biosynthetic process // traceable author statement /// 0006006 // glucose metabolic process // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006412 // translation // inferred by curator /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007144 // female meiosis I // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0007220 // Notch receptor processing // traceable author statement /// 0007249 // I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0007254 // JNK cascade // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008585 // female gonad development // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0010992 // ubiquitin homeostasis // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016197 // endosomal transport // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019068 // virion assembly // traceable author statement /// 0019082 // viral protein processing // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0021888 // hypothalamus gonadotrophin-releasing hormone neuron development // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0032479 // regulation of type I interferon production // traceable author statement /// 0032480 // negative regulation of type I interferon production // traceable author statement /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0034134 // toll-like receptor 2 signaling pathway // traceable author statement /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0034146 // toll-like receptor 5 signaling pathway // traceable author statement /// 0034162 // toll-like receptor 9 signaling pathway // traceable author statement /// 0034166 // toll-like receptor 10 signaling pathway // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038123 // toll-like receptor TLR1:TLR2 signaling pathway // traceable author statement /// 0038124 // toll-like receptor TLR6:TLR2 signaling pathway // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043065 // positive regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050852 // T cell receptor signaling pathway // traceable author statement /// 0051092 // positive regulation of NF-kappaB transcription factor activity // traceable author statement /// 0051403 // stress-activated MAPK cascade // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0060613 // fat pad development // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070423 // nucleotide-binding oligomerization domain containing signaling pathway // traceable author statement /// 0071456 // cellular response to hypoxia // traceable author statement /// 0072520 // seminiferous tubule development // inferred from electronic annotation /// 0075733 // intracellular transport of virus // traceable author statement /// 0097009 // energy homeostasis // inferred from electronic annotation /// 0097190 // apoptotic signaling pathway // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0010008 // endosome membrane // traceable author statement /// 0015935 // small ribosomal subunit // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 64.25 2318.32 0.27 0.79 0.83 -4.62
204418_x_at 204418_x_at NM_000848 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000848.1 /DEF=Homo sapiens glutathione S-transferase M2 (muscle) (GSTM2), mRNA. /FEA=mRNA /GEN=GSTM2 /PROD=glutathione S-transferase M2 (muscle) /DB_XREF=gi:4504174 /UG=Hs.279837 glutathione S-transferase M2 (muscle) /FL=gb:M63509.1 gb:NM_000848.1 NM_000848 glutathione S-transferase mu 2 (muscle) GSTM2 2946 NM_000848 /// NM_001142368 0006749 // glutathione metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // inferred by curator /// 0014809 // regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion // inferred by curator /// 0018916 // nitrobenzene metabolic process // inferred from direct assay /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0055119 // relaxation of cardiac muscle // traceable author statement /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060316 // positive regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0070458 // cellular detoxification of nitrogen compound // inferred from direct assay /// 0071313 // cellular response to caffeine // inferred from direct assay /// 1901687 // glutathione derivative biosynthetic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043295 // glutathione binding // inferred from direct assay 4.55 131.78 0.27 0.79 0.83 -4.62
201190_s_at 201190_s_at H15647 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:H15647 /FEA=EST /DB_XREF=gi:880467 /DB_XREF=est:ym27b09.s1 /CLONE=IMAGE:49287 /UG=Hs.79709 phosphotidylinositol transfer protein /FL=gb:D30036.1 gb:M73704.1 gb:NM_006224.1 H15647 phosphatidylinositol transfer protein, alpha PITPNA 5306 NM_006224 0006629 // lipid metabolic process // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007601 // visual perception // traceable author statement /// 0015914 // phospholipid transport // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000062 // fatty-acyl-CoA binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008525 // phosphatidylcholine transporter activity // traceable author statement /// 0008526 // phosphatidylinositol transporter activity // traceable author statement /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation /// 0070540 // stearic acid binding // inferred from electronic annotation 10.32 295.84 0.27 0.80 0.84 -4.62
217892_s_at 217892_s_at NM_016357 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016357.1 /DEF=Homo sapiens epithelial protein lost in neoplasm beta (EPLIN), mRNA. /FEA=mRNA /GEN=EPLIN /PROD=epithelial protein lost in neoplasm beta /DB_XREF=gi:7705372 /UG=Hs.10706 epithelial protein lost in neoplasm beta /FL=gb:AL136911.1 gb:BC001247.1 gb:AF198454.1 gb:NM_016357.1 NM_016357 LIM domain and actin binding 1 LIMA1 51474 NM_001113546 /// NM_001113547 /// NM_001243775 /// NM_016357 0030835 // negative regulation of actin filament depolymerization // inferred from direct assay /// 0031529 // ruffle organization // inferred from direct assay /// 0051017 // actin filament bundle assembly // inferred from direct assay 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003785 // actin monomer binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay 17.98 569.51 0.27 0.80 0.84 -4.62
213028_at 213028_at AI887378 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI887378 /FEA=EST /DB_XREF=gi:5592542 /DB_XREF=est:wm39f04.x1 /CLONE=IMAGE:2438335 /UG=Hs.282441 nuclear factor related to kappa B binding protein AI887378 nuclear factor related to kappaB binding protein NFRKB 4798 NM_001143835 /// NM_006165 /// XM_005271565 /// XM_005271566 /// XM_005271567 /// XM_005271568 /// XM_005271569 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0031011 // Ino80 complex // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 4.07 55.04 0.27 0.80 0.84 -4.62
211531_x_at 211531_x_at K03205 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:K03205.1 /DEF=Human PRB1 locus salivary proline-rich protein mRNA, clone cP4, complete cds. /FEA=mRNA /GEN=PRB1 /DB_XREF=gi:190503 /UG=Hs.73953 proline-rich protein BstNI subfamily 2 /FL=gb:K03205.1 K03205 proline-rich protein BstNI subfamily 1 PRB1 5542 NM_005039 /// NM_199353 /// NM_199354 0005576 // extracellular region // inferred from electronic annotation -4.15 51.33 -0.27 0.80 0.84 -4.62
206592_s_at 206592_s_at NM_003938 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003938.1 /DEF=Homo sapiens adaptor-related protein complex 3, delta 1 subunit (AP3D1), mRNA. /FEA=mRNA /GEN=AP3D1 /PROD=adaptor-related protein complex 3, delta 1subunit /DB_XREF=gi:4501976 /UG=Hs.75056 adaptor-related protein complex 3, delta 1 subunit /FL=gb:U91930.1 gb:NM_003938.1 NM_003938 adaptor-related protein complex 3, delta 1 subunit AP3D1 8943 NM_001077523 /// NM_001261826 /// NM_003938 /// XM_006722932 0006726 // eye pigment biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032438 // melanosome organization // inferred by curator /// 0033365 // protein localization to organelle // inferred from electronic annotation /// 0035646 // endosome to melanosome transport // inferred from mutant phenotype /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // inferred from electronic annotation /// 0048490 // anterograde synaptic vesicle transport // inferred from sequence or structural similarity /// 0048499 // synaptic vesicle membrane organization // inferred from electronic annotation /// 0051138 // positive regulation of NK T cell differentiation // inferred from electronic annotation /// 0061088 // regulation of sequestering of zinc ion // inferred from mutant phenotype /// 0072657 // protein localization to membrane // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005794 // Golgi apparatus // traceable author statement /// 0010008 // endosome membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043195 // terminal bouton // inferred from electronic annotation 0005215 // transporter activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 11.28 431.39 0.27 0.80 0.84 -4.62
218595_s_at 218595_s_at NM_018072 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018072.1 /DEF=Homo sapiens hypothetical protein FLJ10359 (FLJ10359), mRNA. /FEA=mRNA /GEN=FLJ10359 /PROD=hypothetical protein FLJ10359 /DB_XREF=gi:8922377 /UG=Hs.285861 hypothetical protein FLJ10359 /FL=gb:NM_018072.1 NM_018072 HEAT repeat containing 1 HEATR1 55127 NM_018072 /// XR_426917 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay -6.40 271.73 -0.27 0.80 0.84 -4.62
202592_at 202592_at NM_001487 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001487.1 /DEF=Homo sapiens GCN5 (general control of amino-acid synthesis, yeast, homolog)-like 1 (GCN5L1), mRNA. /FEA=mRNA /GEN=GCN5L1 /PROD=GCN5 (general control of amino-acid synthesis,yeast, homolog)-like 1 /DB_XREF=gi:4503954 /UG=Hs.94672 GCN5 (general control of amino-acid synthesis, yeast, homolog)-like 1 /FL=gb:D64007.1 gb:NM_001487.1 NM_001487 biogenesis of lysosomal organelles complex-1, subunit 1 BLOC1S1 2647 NM_001487 /// NR_037655 /// NR_037656 /// NR_037657 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0009060 // aerobic respiration // inferred from mutant phenotype /// 0018394 // peptidyl-lysine acetylation // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0032438 // melanosome organization // non-traceable author statement /// 0048490 // anterograde synaptic vesicle transport // inferred from sequence or structural similarity /// 0060155 // platelet dense granule organization // non-traceable author statement /// 0061024 // membrane organization // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005765 // lysosomal membrane // traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0031083 // BLOC-1 complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 4.10 165.55 0.27 0.80 0.84 -4.62
208757_at 208757_at BC001123 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001123.1 /DEF=Homo sapiens, Similar to gp25L2 protein, clone MGC:2142, mRNA, complete cds. /FEA=mRNA /PROD=Similar to gp25L2 protein /DB_XREF=gi:12654574 /UG=Hs.279929 gp25L2 protein /FL=gb:BC001123.1 BC001123 transmembrane emp24 protein transport domain containing 9 TMED9 54732 NM_017510 0006810 // transport // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0010638 // positive regulation of organelle organization // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032527 // protein exit from endoplasmic reticulum // inferred from mutant phenotype /// 0034498 // early endosome to Golgi transport // inferred from mutant phenotype /// 0048205 // COPI coating of Golgi vesicle // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // traceable author statement /// 0033116 // endoplasmic reticulum-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction -17.00 388.38 -0.26 0.80 0.84 -4.62
396_f_at 396_f_at X97671 Homo sapiens Oct 6, 2014 Exemplar sequence Affymetrix Proprietary Database X97671 /FEATURE=cds /DEFINITION=HSERYTHR H.sapiens mRNA for erythropoietin receptor X97671 erythropoietin receptor EPOR 2057 NM_000121 /// NR_033663 0007165 // signal transduction // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0038162 // erythropoietin-mediated signaling pathway // inferred from direct assay /// 0038162 // erythropoietin-mediated signaling pathway // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004888 // transmembrane signaling receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004900 // erythropoietin receptor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 10.23 388.79 0.26 0.80 0.84 -4.62
207988_s_at 207988_s_at NM_005731 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005731.1 /DEF=Homo sapiens actin related protein 23 complex, subunit 2 (34 kD) (ARPC2), mRNA. /FEA=mRNA /GEN=ARPC2 /PROD=actin related protein 23 complex, subunit 2 (34kD) /DB_XREF=gi:5031598 /UG=Hs.83583 actin related protein 23 complex, subunit 2 (34 kD) /FL=gb:AF006085.1 gb:NM_005731.1 NM_005731 actin related protein 2/3 complex, subunit 2, 34kDa ARPC2 10109 NM_005731 /// NM_152862 /// XM_006712173 0006928 // cellular component movement // traceable author statement /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 1900026 // positive regulation of substrate adhesion-dependent cell spreading // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0015629 // actin cytoskeleton // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0019894 // kinesin binding // inferred from electronic annotation /// 0035650 // AP-1 adaptor complex binding // inferred from electronic annotation /// 0071933 // Arp2/3 complex binding // inferred from electronic annotation -14.55 863.60 -0.26 0.80 0.84 -4.62
201644_at 201644_at NM_003313 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003313.2 /DEF=Homo sapiens tissue specific transplantation antigen P35B (TSTA3), mRNA. /FEA=mRNA /GEN=TSTA3 /PROD=tissue specific transplantation antigen P35B /DB_XREF=gi:6598326 /UG=Hs.264428 tissue specific transplantation antigen P35B /FL=gb:BC001941.1 gb:U58766.1 gb:NM_003313.2 NM_003313 tissue specific transplantation antigen P35B TSTA3 7264 NM_003313 /// XM_005251050 /// XM_005251051 /// XM_005251052 /// XM_006725093 /// XM_006725094 0007159 // leukocyte cell-cell adhesion // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0019673 // GDP-mannose metabolic process // inferred from direct assay /// 0019835 // cytolysis // inferred from electronic annotation /// 0042351 // 'de novo' GDP-L-fucose biosynthetic process // inferred from direct assay /// 0042351 // 'de novo' GDP-L-fucose biosynthetic process // inferred from electronic annotation /// 0042351 // 'de novo' GDP-L-fucose biosynthetic process // traceable author statement /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0045226 // extracellular polysaccharide biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // inferred by curator /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0008831 // dTDP-4-dehydrorhamnose reductase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042356 // GDP-4-dehydro-D-rhamnose reductase activity // traceable author statement /// 0050577 // GDP-L-fucose synthase activity // inferred from direct assay /// 0050662 // coenzyme binding // inferred from electronic annotation -4.60 117.22 -0.26 0.80 0.84 -4.62
215399_s_at 215399_s_at AI683900 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI683900 /FEA=EST /DB_XREF=gi:4894082 /DB_XREF=est:tw54e04.x1 /CLONE=IMAGE:2263518 /UG=Hs.76228 amplified in osteosarcoma AI683900 osteosarcoma amplified 9, endoplasmic reticulum lectin OS9 10956 NM_001017956 /// NM_001017957 /// NM_001017958 /// NM_001261420 /// NM_001261421 /// NM_001261422 /// NM_001261423 /// NM_006812 /// XM_005268581 /// XM_006719200 /// XM_006719201 0006605 // protein targeting // inferred from electronic annotation /// 0006621 // protein retention in ER lumen // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0030433 // ER-associated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0034976 // response to endoplasmic reticulum stress // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from mutant phenotype 0000836 // Hrd1p ubiquitin ligase complex // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay 0001948 // glycoprotein binding // inferred from direct assay /// 0002020 // protease binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -6.60 169.10 -0.26 0.80 0.84 -4.62
78047_s_at 78047_s_at AW001777 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AW001777:ws04f09.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2496233 /clone_end=3' /gb=AW001777 /gi=5848693 /ug=Hs.233641 /len=485 AW001777 MMP24 antisense RNA 1 MMP24-AS1 101410538 NR_102705 /// NR_102706 -6.70 222.12 -0.26 0.80 0.84 -4.62
202668_at 202668_at BF001670 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF001670 /FEA=EST /DB_XREF=gi:10701945 /DB_XREF=est:7g91e06.x1 /CLONE=IMAGE:3313858 /UG=Hs.30942 ephrin-B2 /FL=gb:U81262.1 gb:NM_004093.1 gb:L38734.1 gb:U16797.1 BF001670 ephrin-B2 EFNB2 1948 NM_004093 0001525 // angiogenesis // inferred from electronic annotation /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from direct assay /// 0007155 // cell adhesion // inferred from direct assay /// 0007267 // cell-cell signaling // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010839 // negative regulation of keratinocyte proliferation // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050920 // regulation of chemotaxis // inferred from direct assay /// 2000727 // positive regulation of cardiac muscle cell differentiation // inferred from sequence or structural similarity 0005886 // plasma membrane // not recorded /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046875 // ephrin receptor binding // inferred from physical interaction -9.35 295.10 -0.26 0.80 0.84 -4.62
219939_s_at 219939_s_at NM_007158 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_007158.1 /DEF=Homo sapiens NRAS-related gene (D1S155E), mRNA. /FEA=mRNA /GEN=D1S155E /PROD=NRAS-related gene /DB_XREF=gi:6005738 /UG=Hs.69855 NRAS-related gene /FL=gb:AF077054.1 gb:NM_007158.1 NM_007158 cold shock domain containing E1, RNA-binding CSDE1 7812 NM_001007553 /// NM_001130523 /// NM_001242891 /// NM_001242892 /// NM_001242893 /// NM_007158 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0008584 // male gonad development // traceable author statement /// 0070966 // nuclear-transcribed mRNA catabolic process, no-go decay // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -7.50 622.30 -0.26 0.80 0.84 -4.62
212387_at 212387_at BG495771 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG495771 /FEA=EST /DB_XREF=gi:13457287 /DB_XREF=est:602540396F1 /CLONE=IMAGE:4671599 /UG=Hs.289068 Homo sapiens cDNA FLJ11918 fis, clone HEMBB1000272 BG495771 transcription factor 4 TCF4 6925 NM_001083962 /// NM_001243226 /// NM_001243227 /// NM_001243228 /// NM_001243230 /// NM_001243231 /// NM_001243232 /// NM_001243233 /// NM_001243234 /// NM_001243235 /// NM_001243236 /// NM_003199 /// XM_005266739 /// XM_005266741 /// XM_005266743 /// XM_005266744 /// XM_005266745 /// XM_005266746 /// XM_005266747 /// XM_005266749 /// XM_005266750 /// XM_005266752 /// XM_005266754 /// XM_005266755 /// XM_005266761 /// XM_006722529 /// XM_006722530 /// XM_006722531 /// XM_006722532 /// XM_006722533 /// XM_006722534 /// XM_006722535 /// XM_006722536 /// XM_006722537 /// XM_006722538 /// XM_006722539 /// XM_006722540 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006352 // DNA-templated transcription, initiation // inferred from sequence or structural similarity /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0065004 // protein-DNA complex assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from sequence or structural similarity 0000978 // RNA polymerase II core promoter proximal region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001011 // sequence-specific DNA binding RNA polymerase recruiting transcription factor activity // inferred from sequence or structural similarity /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from sequence or structural similarity /// 0001087 // TFIIB-class binding transcription factor activity // inferred from sequence or structural similarity /// 0001093 // TFIIB-class transcription factor binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from sequence or structural similarity -20.75 544.17 -0.26 0.80 0.84 -4.62
214041_x_at 214041_x_at BE857772 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE857772 /FEA=EST /DB_XREF=gi:10372131 /DB_XREF=est:7d62a11.x1 /CLONE=IMAGE:3251804 /UG=Hs.5566 ribosomal protein L37a BE857772 ribosomal protein L37a RPL37A 6168 NM_000998 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003735 // structural constituent of ribosome // non-traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 13.85 204.18 0.26 0.80 0.84 -4.62
210317_s_at 210317_s_at U28936 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U28936.1 /DEF=Human epsilon 14-3-3 protein mRNA, complete cds. /FEA=mRNA /PROD=epsilon 14-3-3 protein /DB_XREF=gi:984318 /UG=Hs.79474 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, epsilon polypeptide /FL=gb:U28936.1 U28936 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon YWHAE 7531 NM_006761 /// NR_024058 /// XM_005256784 /// XM_006725298 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0001764 // neuron migration // inferred from electronic annotation /// 0003064 // regulation of heart rate by hormone // non-traceable author statement /// 0006605 // protein targeting // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0035308 // negative regulation of protein dephosphorylation // inferred from electronic annotation /// 0035329 // hippo signaling // traceable author statement /// 0035556 // intracellular signal transduction // traceable author statement /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0060306 // regulation of membrane repolarization // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 0086013 // membrane repolarization during cardiac muscle cell action potential // inferred by curator /// 0086091 // regulation of heart rate by cardiac conduction // inferred by curator /// 0097190 // apoptotic signaling pathway // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement /// 1901016 // regulation of potassium ion transmembrane transporter activity // inferred from direct assay /// 1902309 // negative regulation of peptidyl-serine dephosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005871 // kinesin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0023026 // MHC class II protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0044325 // ion channel binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0050815 // phosphoserine binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 19.70 384.38 0.26 0.81 0.84 -4.62
212438_at 212438_at BG252325 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG252325 /FEA=EST /DB_XREF=gi:12762141 /DB_XREF=est:602365913F1 /CLONE=IMAGE:4474082 /UG=Hs.54649 putative nucleic acid binding protein RY-1 BG252325 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) SNRNP27 11017 NM_006857 /// NR_037862 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction -7.55 158.68 -0.26 0.81 0.84 -4.62
200630_x_at 200630_x_at AV702810 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AV702810 /FEA=EST /DB_XREF=gi:10719140 /DB_XREF=est:AV702810 /CLONE=ADBDGH01 /UG=Hs.145279 SET translocation (myeloid leukemia-associated) /FL=gb:U51924.1 gb:M93651.1 gb:NM_003011.1 AV702810 SET nuclear proto-oncogene /// SET-like protein SET /// SETSIP 6418 /// 646817 NM_001122821 /// NM_001248000 /// NM_001248001 /// NM_001287737 /// NM_003011 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006337 // nucleosome disassembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035067 // negative regulation of histone acetylation // traceable author statement /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0045446 // endothelial cell differentiation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0004864 // protein phosphatase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0042393 // histone binding // traceable author statement -32.52 822.71 -0.25 0.81 0.84 -4.62
200647_x_at 200647_x_at NM_003752 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003752.2 /DEF=Homo sapiens eukaryotic translation initiation factor 3, subunit 8 (110kD) (EIF3S8), mRNA. /FEA=mRNA /GEN=EIF3S8 /PROD=eukaryotic translation initiation factor 3,subunit 8 (110kD) /DB_XREF=gi:5579457 /UG=Hs.4835 eukaryotic translation initiation factor 3, subunit 8 (110kD) /FL=gb:NM_003752.2 NM_003752 eukaryotic translation initiation factor 3, subunit C /// eukaryotic translation initiation factor 3, subunit C-like EIF3C /// EIF3CL 8663 /// 728689 NM_001037808 /// NM_001099661 /// NM_001199142 /// NM_001267574 /// NM_001286478 /// NM_003752 /// XM_005255535 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -32.27 1022.79 -0.25 0.81 0.84 -4.62
201386_s_at 201386_s_at AF279891 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF279891.1 /DEF=Homo sapiens dead box protein 15 mRNA, complete cds. /FEA=mRNA /PROD=dead box protein 15 /DB_XREF=gi:9624452 /UG=Hs.5683 DEADH (Asp-Glu-Ala-AspHis) box polypeptide 15 /FL=gb:AB001636.1 gb:NM_001358.1 gb:AF279891.1 AF279891 DEAH (Asp-Glu-Ala-His) box helicase 15 DHX15 1665 NM_001358 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // inferred by curator 0005634 // nucleus // inferred from direct assay /// 0005689 // U12-type spliceosomal complex // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0071008 // U2-type post-mRNA release spliceosomal complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // traceable author statement /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -10.70 550.55 -0.25 0.81 0.85 -4.62
212293_at 212293_at BG111260 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG111260 /FEA=EST /DB_XREF=gi:12604766 /DB_XREF=est:602281701F1 /CLONE=IMAGE:4369057 /UG=Hs.12259 KIAA0630 protein BG111260 homeodomain interacting protein kinase 1 HIPK1 204851 NM_152696 /// NM_181358 /// NM_198268 /// NM_198269 /// XM_005270609 /// XM_005270610 /// XM_005270611 /// XM_005270612 /// XM_005270613 /// XM_006710443 0001654 // eye development // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern specification // inferred from electronic annotation /// 0010803 // regulation of tumor necrosis factor-mediated signaling pathway // inferred from direct assay /// 0010842 // retina layer formation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016926 // protein desumoylation // inferred from direct assay /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0042771 // intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0060059 // embryonic retina morphogenesis in camera-type eye // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // inferred from sequence or structural similarity /// 0060235 // lens induction in camera-type eye // inferred from electronic annotation /// 0061072 // iris morphogenesis // inferred from electronic annotation /// 0072577 // endothelial cell apoptotic process // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation -4.47 218.54 -0.25 0.81 0.85 -4.62
211926_s_at 211926_s_at AI827941 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI827941 /FEA=EST /DB_XREF=gi:5448699 /DB_XREF=est:wk31a02.x1 /CLONE=IMAGE:2413898 /UG=Hs.146550 myosin, heavy polypeptide 9, non-muscle /FL=gb:NM_002473.1 AI827941 myosin, heavy chain 9, non-muscle MYH9 4627 NM_002473 0000212 // meiotic spindle organization // inferred from electronic annotation /// 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0000910 // cytokinesis // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001768 // establishment of T cell polarity // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from direct assay /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0007520 // myoblast fusion // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0015031 // protein transport // inferred from mutant phenotype /// 0016337 // single organismal cell-cell adhesion // inferred from electronic annotation /// 0030048 // actin filament-based movement // inferred from direct assay /// 0030220 // platelet formation // inferred from mutant phenotype /// 0030224 // monocyte differentiation // inferred from expression pattern /// 0031032 // actomyosin structure organization // inferred from direct assay /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0032796 // uropod organization // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0043534 // blood vessel endothelial cell migration // inferred from mutant phenotype /// 0050900 // leukocyte migration // non-traceable author statement /// 0051295 // establishment of meiotic spindle localization // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0001726 // ruffle // inferred from direct assay /// 0001772 // immunological synapse // inferred from direct assay /// 0001931 // uropod // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005826 // actomyosin contractile ring // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0008180 // COP9 signalosome // inferred from direct assay /// 0008305 // integrin complex // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0016460 // myosin II complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from direct assay /// 0042641 // actomyosin // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0097513 // myosin II filament // inferred from direct assay 0000146 // microfilament motor activity // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003774 // motor activity // non-traceable author statement /// 0003779 // actin binding // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0030898 // actin-dependent ATPase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043495 // protein anchor // inferred from mutant phenotype /// 0043531 // ADP binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from direct assay /// 0051015 // actin filament binding // non-traceable author statement -18.42 1033.59 -0.25 0.81 0.85 -4.62
218515_at 218515_at NM_016631 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016631.1 /DEF=Homo sapiens hypothetical protein (LOC51325), mRNA. /FEA=mRNA /GEN=LOC51325 /PROD=hypothetical protein /DB_XREF=gi:7706175 /UG=Hs.26461 hypothetical protein /FL=gb:AF208862.1 gb:NM_016631.1 NM_016631 PAX3 and PAX7 binding protein 1 PAXBP1 94104 NM_013329 /// NM_016631 /// NM_058191 /// NM_145328 /// NR_027873 /// XM_006724066 /// XM_006724067 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0007517 // muscle organ development // inferred from electronic annotation /// 0014842 // regulation of satellite cell proliferation // inferred from electronic annotation /// 0031062 // positive regulation of histone methylation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 2000288 // positive regulation of myoblast proliferation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation 4.00 104.95 0.25 0.81 0.85 -4.62
209896_s_at 209896_s_at AF119855 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF119855.1 /DEF=Homo sapiens PRO1847 mRNA, complete cds. /FEA=mRNA /PROD=PRO1847 /DB_XREF=gi:7770146 /UG=Hs.285196 hypothetical protein PRO1847 /FL=gb:AF119855.1 AF119855 protein tyrosine phosphatase, non-receptor type 11 PTPN11 5781 NM_002834 /// NM_080601 /// XM_006719526 /// XM_006719527 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from mutant phenotype /// 0007507 // heart development // inferred from mutant phenotype /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0031295 // T cell costimulation // traceable author statement /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from mutant phenotype /// 0035265 // organ growth // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 0036302 // atrioventricular canal development // inferred from mutant phenotype /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0038127 // ERBB signaling pathway // inferred from direct assay /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046825 // regulation of protein export from nucleus // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048609 // multicellular organismal reproductive process // inferred from electronic annotation /// 0048806 // genitalia development // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from mutant phenotype /// 0050900 // leukocyte migration // traceable author statement /// 0051463 // negative regulation of cortisol secretion // inferred from electronic annotation /// 0060125 // negative regulation of growth hormone secretion // inferred from electronic annotation /// 0060325 // face morphogenesis // inferred from mutant phenotype /// 0060333 // interferon-gamma-mediated signaling pathway // traceable author statement /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // traceable author statement /// 0060337 // type I interferon signaling pathway // traceable author statement /// 0060338 // regulation of type I interferon-mediated signaling pathway // traceable author statement /// 2001275 // positive regulation of glucose import in response to insulin stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // traceable author statement /// 0005070 // SH3/SH2 adaptor activity // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation /// 0031748 // D1 dopamine receptor binding // inferred from electronic annotation /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0051428 // peptide hormone receptor binding // inferred from electronic annotation -9.82 297.04 -0.25 0.81 0.85 -4.62
202888_s_at 202888_s_at NM_001150 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001150.1 /DEF=Homo sapiens alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150) (ANPEP), mRNA. /FEA=mRNA /GEN=ANPEP /PROD=membrane alanine aminopeptidase precursor /DB_XREF=gi:4502094 /UG=Hs.1239 alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150) /FL=gb:M22324.1 gb:NM_001150.1 NM_001150 alanyl (membrane) aminopeptidase ANPEP 290 NM_001150 /// XM_005254892 0001525 // angiogenesis // inferred from electronic annotation /// 0002003 // angiotensin maturation // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001618 // virus receptor activity // inferred from electronic annotation /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -8.48 252.49 -0.25 0.81 0.85 -4.62
221711_s_at 221711_s_at BC006244 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006244.1 /DEF=Homo sapiens, HSPC142 protein, clone MGC:11295, mRNA, complete cds. /FEA=mRNA /PROD=HSPC142 protein /DB_XREF=gi:13623286 /FL=gb:BC006244.1 BC006244 BRISC and BRCA1 A complex member 1 BABAM1 29086 NM_001033549 /// NM_001288756 /// NM_001288757 /// NM_014173 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from mutant phenotype /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2 DNA damage checkpoint // inferred from mutant phenotype /// 0045739 // positive regulation of DNA repair // inferred from mutant phenotype /// 0070536 // protein K63-linked deubiquitination // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070531 // BRCA1-A complex // inferred from direct assay /// 0070552 // BRISC complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 4.87 155.74 0.25 0.81 0.85 -4.62
203216_s_at 203216_s_at NM_004999 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004999.1 /DEF=Homo sapiens myosin VI (MYO6), mRNA. /FEA=mRNA /GEN=MYO6 /PROD=myosin VI /DB_XREF=gi:4826845 /UG=Hs.22564 myosin VI /FL=gb:AB002387.1 gb:NM_004999.1 NM_004999 myosin VI MYO6 4646 NM_004999 /// XM_005248719 /// XM_005248720 /// XM_005248721 /// XM_005248722 /// XM_005248724 /// XM_005248725 /// XM_005248726 0006605 // protein targeting // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0007268 // synaptic transmission // traceable author statement /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from sequence or structural similarity /// 0008152 // metabolic process // non-traceable author statement /// 0014047 // glutamate secretion // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0030048 // actin filament-based movement // inferred from sequence or structural similarity /// 0030048 // actin filament-based movement // non-traceable author statement /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from direct assay /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 0051046 // regulation of secretion // inferred from mutant phenotype /// 0061024 // membrane organization // traceable author statement /// 0071257 // cellular response to electrical stimulus // inferred from electronic annotation 0001726 // ruffle // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005902 // microvillus // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005938 // cell cortex // inferred from sequence or structural similarity /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0016461 // unconventional myosin complex // traceable author statement /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0030665 // clathrin-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from direct assay /// 0031941 // filamentous actin // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from direct assay /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045334 // clathrin-coated endocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0005516 // calmodulin binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0043531 // ADP binding // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from sequence or structural similarity /// 0060001 // minus-end directed microfilament motor activity // non-traceable author statement 9.40 227.88 0.25 0.81 0.85 -4.62
219193_at 219193_at NM_018034 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018034.1 /DEF=Homo sapiens hypothetical protein FLJ10233 (FLJ10233), mRNA. /FEA=mRNA /GEN=FLJ10233 /PROD=hypothetical protein FLJ10233 /DB_XREF=gi:8922300 /UG=Hs.16079 hypothetical protein FLJ10233 /FL=gb:NM_018034.1 NM_018034 WD repeat domain 70 WDR70 55100 NM_018034 /// XM_005248318 /// XM_006714478 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction -4.50 75.22 -0.24 0.81 0.85 -4.62
214736_s_at 214736_s_at BE898639 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE898639 /FEA=EST /DB_XREF=gi:10365322 /DB_XREF=est:601681587F1 /CLONE=IMAGE:3951933 /UG=Hs.183706 adducin 1 (alpha) BE898639 adducin 1 (alpha) ADD1 118 NM_001119 /// NM_001286645 /// NM_014189 /// NM_014190 /// NM_176801 /// XM_005247933 /// XM_005247934 /// XM_005247935 /// XM_005247936 /// XM_005247937 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006884 // cell volume homeostasis // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007010 // cytoskeleton organization // non-traceable author statement /// 0020027 // hemoglobin metabolic process // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred by curator /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030837 // negative regulation of actin filament polymerization // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0051016 // barbed-end actin filament capping // inferred from direct assay /// 0051017 // actin filament bundle assembly // inferred from direct assay /// 0071300 // cellular response to retinoic acid // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0008290 // F-actin capping protein complex // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003779 // actin binding // traceable author statement /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0030507 // spectrin binding // inferred from direct assay /// 0042608 // T cell receptor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051015 // actin filament binding // inferred from direct assay -5.65 354.18 -0.24 0.82 0.85 -4.62
201955_at 201955_at AL137784 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL137784 /DEF=Human DNA sequence from clone RP1-199J3 on chromosome 6 Contains ESTs, STSs, GSSs and CpG islands. Contains part of the gene for a novel protein similar to ubiquitin carboxyl-terminal hudrolase 16 (EC 3.1.2.15), a novel gene, the CCNC gene encodin... /FEA=mRNA /DB_XREF=gi:9863487 /UG=Hs.118442 cyclin C /FL=gb:NM_005190.2 AL137784 cyclin C CCNC 892 NM_001013399 /// NM_005190 /// XM_005267202 /// XM_006715594 0000079 // regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // traceable author statement /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007219 // Notch signaling pathway // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // traceable author statement /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation 6.30 408.43 0.24 0.82 0.85 -4.62
201586_s_at 201586_s_at NM_005066 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005066.1 /DEF=Homo sapiens splicing factor prolineglutamine rich (polypyrimidine tract-binding protein-associated) (SFPQ), mRNA. /FEA=mRNA /GEN=SFPQ /PROD=splicing factor prolineglutamine rich(polypyrimidine tract-binding protein-associated) /DB_XREF=gi:4826997 /UG=Hs.180610 splicing factor prolineglutamine rich (polypyrimidine tract-binding protein-associated) /FL=gb:NM_005066.1 NM_005066 splicing factor proline/glutamine-rich SFPQ 6421 NM_005066 /// XM_005271111 /// XM_005271112 /// XM_005271113 /// XM_005271115 /// XM_005271116 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000380 // alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006397 // mRNA processing // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0042754 // negative regulation of circadian rhythm // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0048511 // rhythmic process // inferred from electronic annotation /// 0070932 // histone H3 deacetylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0042382 // paraspeckles // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 13.20 753.80 0.24 0.82 0.86 -4.62
208638_at 208638_at BE910010 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE910010 /FEA=EST /DB_XREF=gi:10406176 /DB_XREF=est:601498050F1 /CLONE=IMAGE:3899869 /UG=Hs.182429 protein disulfide isomerase-related protein /FL=gb:BC001312.1 BE910010 protein disulfide isomerase family A, member 6 PDIA6 10130 NM_001282704 /// NM_001282705 /// NM_001282706 /// NM_001282707 /// NM_005742 /// XM_005246145 /// XM_006711856 0006457 // protein folding // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation -8.57 685.16 -0.23 0.82 0.86 -4.62
216308_x_at 216308_x_at AK026752 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK026752.1 /DEF=Homo sapiens cDNA: FLJ23099 fis, clone LNG07460, highly similar to AF113251 Homo sapiens putative 2-hydroxyacid dehydrogenase mRNA. /FEA=mRNA /DB_XREF=gi:10439675 /UG=Hs.155742 glyoxylate reductasehydroxypyruvate reductase AK026752 glyoxylate reductase/hydroxypyruvate reductase GRHPR 9380 NM_012203 /// XM_005251631 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0007588 // excretion // inferred from mutant phenotype /// 0008152 // metabolic process // non-traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0043648 // dicarboxylic acid metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0046487 // glyoxylate metabolic process // traceable author statement /// 0051259 // protein oligomerization // inferred from direct assay /// 0055114 // oxidation-reduction process // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005782 // peroxisomal matrix // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0008465 // glycerate dehydrogenase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016618 // hydroxypyruvate reductase activity // inferred from direct assay /// 0030267 // glyoxylate reductase (NADP) activity // inferred from direct assay /// 0030267 // glyoxylate reductase (NADP) activity // non-traceable author statement /// 0031406 // carboxylic acid binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0048037 // cofactor binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation /// 0051287 // NAD binding // traceable author statement /// 0070402 // NADPH binding // inferred from direct assay 5.67 169.46 0.23 0.82 0.86 -4.62
217918_at 217918_at NM_014183 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014183.1 /DEF=Homo sapiens HSPC162 protein (HSPC162), mRNA. /FEA=mRNA /GEN=HSPC162 /PROD=HSPC162 protein /DB_XREF=gi:7661821 /UG=Hs.100002 HSPC162 protein /FL=gb:BC002481.1 gb:AY026513.1 gb:AF161511.1 gb:NM_014183.1 gb:AF165516.1 NM_014183 dynein, light chain, roadblock-type 1 DYNLRB1 83658 NM_001281727 /// NM_001281728 /// NM_001281729 /// NM_014183 /// NM_177953 /// NR_104032 /// XM_005260568 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // non-traceable author statement /// 0007632 // visual behavior // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005868 // cytoplasmic dynein complex // non-traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 12.62 816.84 0.23 0.82 0.86 -4.62
201621_at 201621_at NM_005380 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005380.1 /DEF=Homo sapiens neuroblastoma, suppression of tumorigenicity 1 (NBL1), mRNA. /FEA=mRNA /GEN=NBL1 /PROD=neuroblastoma, suppression of tumorigenicity 1 /DB_XREF=gi:4885508 /UG=Hs.76307 neuroblastoma, suppression of tumorigenicity 1 /FL=gb:NM_005380.1 gb:D28124.1 NM_005380 neuroblastoma 1, DAN family BMP antagonist NBL1 4681 NM_001204084 /// NM_001204085 /// NM_001204086 /// NM_001278164 /// NM_001278165 /// NM_001278166 /// NM_005380 /// NM_182744 0007399 // nervous system development // inferred from sequence or structural similarity /// 0030514 // negative regulation of BMP signaling pathway // inferred from direct assay /// 0035582 // sequestering of BMP in extracellular matrix // inferred from sequence or structural similarity /// 0038098 // sequestering of BMP from receptor via BMP binding // inferred from direct assay /// 0045666 // positive regulation of neuron differentiation // inferred from sequence or structural similarity /// 0048263 // determination of dorsal identity // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0090027 // negative regulation of monocyte chemotaxis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred by curator /// 0005739 // mitochondrion // /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0016015 // morphogen activity // inferred from sequence or structural similarity /// 0036122 // BMP binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from mutant phenotype 5.02 83.04 0.23 0.82 0.86 -4.62
218384_at 218384_at NM_014316 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014316.1 /DEF=Homo sapiens calcium-regulated heat-stable protein (24kD) (CRHSP-24), mRNA. /FEA=mRNA /GEN=CRHSP-24 /PROD=calcium-regulated heat-stable protein (24kD) /DB_XREF=gi:7656994 /UG=Hs.92198 calcium-regulated heat-stable protein (24kD) /FL=gb:BC001333.1 gb:BC003366.1 gb:AF115345.1 gb:NM_014316.1 NM_014316 calcium regulated heat stable protein 1, 24kDa CARHSP1 23589 NM_001042476 /// NM_001278260 /// NM_001278261 /// NM_001278262 /// NM_001278263 /// NM_001278264 /// NM_001278265 /// NM_001278266 /// NM_014316 /// XM_005255228 /// XM_005255229 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0035556 // intracellular signal transduction // traceable author statement /// 0043488 // regulation of mRNA stability // inferred from sequence or structural similarity 0000177 // cytoplasmic exosome (RNase complex) // inferred from sequence or structural similarity /// 0000932 // cytoplasmic mRNA processing body // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0043186 // P granule // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0019902 // phosphatase binding // non-traceable author statement -5.13 88.81 -0.23 0.82 0.86 -4.62
217854_s_at 217854_s_at NM_002695 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002695.1 /DEF=Homo sapiens polymerase (RNA) II (DNA directed) polypeptide E (25kD) (POLR2E), mRNA. /FEA=mRNA /GEN=POLR2E /PROD=polymerase (RNA) II (DNA directed) polypeptide E(25kD) /DB_XREF=gi:4505944 /UG=Hs.24301 polymerase (RNA) II (DNA directed) polypeptide E (25kD) /FL=gb:BC004441.1 gb:NM_002695.1 gb:J04965.1 gb:D38251.1 NM_002695 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa POLR2E 5434 NM_002695 /// XM_005259579 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // traceable author statement /// 0006368 // transcription elongation from RNA polymerase II promoter // traceable author statement /// 0006370 // 7-methylguanosine mRNA capping // traceable author statement /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0006385 // transcription elongation from RNA polymerase III promoter // traceable author statement /// 0006386 // termination of RNA polymerase III transcription // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032481 // positive regulation of type I interferon production // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0050434 // positive regulation of viral transcription // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from direct assay /// 0005666 // DNA-directed RNA polymerase III complex // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // not recorded /// 0005829 // cytosol // traceable author statement 0001054 // RNA polymerase I activity // not recorded /// 0001055 // RNA polymerase II activity // not recorded /// 0001056 // RNA polymerase III activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 13.85 537.98 0.23 0.82 0.86 -4.62
202185_at 202185_at NM_001084 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001084.1 /DEF=Homo sapiens procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 (PLOD3), mRNA. /FEA=mRNA /GEN=PLOD3 /PROD=procollagen-lysine, 2-oxoglutarate 5-dioxygenase3v /DB_XREF=gi:4505890 /UG=Hs.153357 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 /FL=gb:AF046889.1 gb:AF068229.1 gb:NM_001084.1 NM_001084 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 PLOD3 8985 NM_001084 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0006464 // cellular protein modification process // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0042311 // vasodilation // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0070831 // basement membrane assembly // inferred from electronic annotation 0005581 // collagen trimer // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0033823 // procollagen glucosyltransferase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050211 // procollagen galactosyltransferase activity // traceable author statement /// 0051213 // dioxygenase activity // inferred from electronic annotation -11.35 466.32 -0.23 0.83 0.86 -4.62
211277_x_at 211277_x_at BC004369 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC004369.1 /DEF=Homo sapiens, Similar to amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease), clone MGC:10403, mRNA, complete cds. /FEA=mRNA /PROD=Similar to amyloid beta (A4) precursor protein(protease nexin-II, Alzheimer disease) /DB_XREF=gi:13325111 /UG=Hs.177486 amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) /FL=gb:BC004369.1 BC004369 amyloid beta (A4) precursor protein APP 351 NM_000484 /// NM_001136016 /// NM_001136129 /// NM_001136130 /// NM_001136131 /// NM_001204301 /// NM_001204302 /// NM_001204303 /// NM_201413 /// NM_201414 0000085 // mitotic G2 phase // inferred from sequence or structural similarity /// 0001967 // suckling behavior // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006378 // mRNA polyadenylation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0006915 // apoptotic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from sequence or structural similarity /// 0007596 // blood coagulation // traceable author statement /// 0007617 // mating behavior // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0008088 // axon cargo transport // inferred from sequence or structural similarity /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from sequence or structural similarity /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // inferred from electronic annotation /// 0010971 // positive regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0016199 // axon midline choice point recognition // inferred from sequence or structural similarity /// 0016322 // neuron remodeling // inferred from sequence or structural similarity /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0030168 // platelet activation // traceable author statement /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // traceable author statement /// 0030900 // forebrain development // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from sequence or structural similarity /// 0035872 // nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway // traceable author statement /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0045087 // innate immune response // traceable author statement /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048669 // collateral sprouting in absence of injury // inferred from sequence or structural similarity /// 0050803 // regulation of synapse structure and activity // inferred from sequence or structural similarity /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051124 // synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0051402 // neuron apoptotic process // inferred from mutant phenotype /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from sequence or structural similarity /// 0030424 // axon // inferred from sequence or structural similarity /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0051233 // spindle midzone // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // inferred from sequence or structural similarity /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation /// 0051425 // PTB domain binding // inferred from physical interaction /// 0070851 // growth factor receptor binding // inferred from electronic annotation -12.22 127.31 -0.23 0.83 0.86 -4.62
201934_at 201934_at N92524 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:N92524 /FEA=EST /DB_XREF=gi:1264833 /DB_XREF=est:zb28d02.s1 /CLONE=IMAGE:304899 /UG=Hs.194110 hypothetical protein PRO2730 /FL=gb:AF132207.1 gb:NM_025222.1 N92524 WD repeat domain 82 WDR82 80335 NM_025222 0051568 // histone H3-K4 methylation // inferred from direct assay 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from direct assay /// 0048188 // Set1C/COMPASS complex // inferred from direct assay /// 0072357 // PTW/PP1 phosphatase complex // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from direct assay 6.65 528.10 0.23 0.83 0.86 -4.62
203642_s_at 203642_s_at NM_014900 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014900.1 /DEF=Homo sapiens KIAA0977 protein (KIAA0977), mRNA. /FEA=mRNA /GEN=KIAA0977 /PROD=KIAA0977 protein /DB_XREF=gi:7662427 /UG=Hs.300855 KIAA0977 protein /FL=gb:AB023194.1 gb:NM_014900.1 NM_014900 cordon-bleu WH2 repeat protein-like 1 COBLL1 22837 NM_001278458 /// NM_001278460 /// NM_001278461 /// NM_014900 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation -3.55 78.15 -0.23 0.83 0.86 -4.62
201923_at 201923_at NM_006406 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006406.1 /DEF=Homo sapiens thioredoxin peroxidase (antioxidant enzyme) (AOE372), mRNA. /FEA=mRNA /GEN=AOE372 /PROD=thioredoxin peroxidase /DB_XREF=gi:5453548 /UG=Hs.83383 thioredoxin peroxidase (antioxidant enzyme) /FL=gb:BC003609.1 gb:NM_006406.1 gb:U25182.1 NM_006406 peroxiredoxin 4 PRDX4 10549 NM_006406 /// XM_005274438 0007252 // I-kappaB phosphorylation // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0072593 // reactive oxygen species metabolic process // inferred from electronic annotation /// 2000255 // negative regulation of male germ cell proliferation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004601 // peroxidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008379 // thioredoxin peroxidase activity // traceable author statement /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // inferred from electronic annotation -8.95 774.50 -0.22 0.83 0.86 -4.62
200912_s_at 200912_s_at NM_001967 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001967.2 /DEF=Homo sapiens eukaryotic translation initiation factor 4A, isoform 2 (EIF4A2), mRNA. /FEA=mRNA /GEN=EIF4A2 /PROD=eukaryotic translation initiation factor 4A,isoform 2 /DB_XREF=gi:9945313 /UG=Hs.173912 eukaryotic translation initiation factor 4A, isoform 2 /FL=gb:D30655.1 gb:NM_001967.2 NM_001967 eukaryotic translation initiation factor 4A2 /// microRNA 1248 /// small nucleolar RNA, H/ACA box 4 /// small nucleolar RNA, H/ACA box 63 /// small nucleolar RNA, H/ACA box 81 /// small nucleolar RNA, C/D box 2 EIF4A2 /// MIR1248 /// SNORA4 /// SNORA63 /// SNORA81 /// SNORD2 1974 /// 6043 /// 619567 /// 619568 /// 677847 /// 100302143 NM_001967 /// NR_002586 /// NR_002587 /// NR_002588 /// NR_002989 /// NR_031650 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // traceable author statement /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // traceable author statement /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006446 // regulation of translational initiation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005829 // cytosol // traceable author statement /// 0016281 // eukaryotic translation initiation factor 4F complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004386 // helicase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -34.45 1419.17 -0.22 0.83 0.86 -4.62
210142_x_at 210142_x_at AF117234 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF117234.1 /DEF=Homo sapiens flotillin mRNA, complete cds. /FEA=mRNA /PROD=flotillin /DB_XREF=gi:6563241 /UG=Hs.179986 flotillin 1 /FL=gb:AF117234.1 AF117234 flotillin 1 FLOT1 10211 NM_005803 /// XM_005248780 /// XM_005248781 /// XM_005272759 /// XM_005272760 /// XM_005274909 /// XM_005274910 /// XM_005275335 /// XM_005275336 /// XM_005275502 /// XM_005275503 /// XM_006714947 /// XM_006725465 /// XM_006725672 /// XM_006725971 /// XM_006726072 0007409 // axonogenesis // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // inferred from mutant phenotype /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0072659 // protein localization to plasma membrane // inferred from electronic annotation /// 0090002 // establishment of protein localization to plasma membrane // inferred from mutant phenotype 0005765 // lysosomal membrane // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // traceable author statement /// 0008180 // COP9 signalosome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // traceable author statement /// 0016600 // flotillin complex // inferred from electronic annotation /// 0034451 // centriolar satellite // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from electronic annotation -14.70 555.92 -0.22 0.83 0.86 -4.62
203774_at 203774_at NM_000254 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000254.1 /DEF=Homo sapiens 5-methyltetrahydrofolate-homocysteine methyltransferase (MTR), mRNA. /FEA=mRNA /GEN=MTR /PROD=5-methyltetrahydrofolate-homocysteinemethyltransferase /DB_XREF=gi:4557764 /UG=Hs.82283 5-methyltetrahydrofolate-homocysteine methyltransferase /FL=gb:U73338.1 gb:U75743.1 gb:U71285.1 gb:NM_000254.1 NM_000254 5-methyltetrahydrofolate-homocysteine methyltransferase MTR 4548 NM_000254 /// NM_001291939 /// NM_001291940 /// XM_005273141 /// XM_005273143 /// XM_005273145 /// XM_006711769 /// XM_006711770 0000096 // sulfur amino acid metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009235 // cobalamin metabolic process // traceable author statement /// 0032259 // methylation // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042558 // pteridine-containing compound metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008705 // methionine synthase activity // inferred from electronic annotation /// 0008898 // S-adenosylmethionine-homocysteine S-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031419 // cobalamin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -3.17 91.49 -0.22 0.83 0.87 -4.62
202362_at 202362_at NM_002884 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002884.1 /DEF=Homo sapiens RAP1A, member of RAS oncogene family (RAP1A), mRNA. /FEA=mRNA /GEN=RAP1A /PROD=RAP1A, member of RAS oncogene family /DB_XREF=gi:4506412 /UG=Hs.865 RAP1A, member of RAS oncogene family /FL=gb:NM_002884.1 gb:M22995.1 NM_002884 RAP1A, member of RAS oncogene family RAP1A 5906 NM_001010935 /// NM_001291896 /// NM_002884 /// XM_006710803 /// XR_246288 0000186 // activation of MAPKK activity // traceable author statement /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0010976 // positive regulation of neuron projection development // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from direct assay /// 0030168 // platelet activation // traceable author statement /// 0032486 // Rap protein signal transduction // inferred from mutant phenotype /// 0032854 // positive regulation of Rap GTPase activity // inferred from sequence or structural similarity /// 0038180 // nerve growth factor signaling pathway // inferred from sequence or structural similarity /// 0044281 // small molecule metabolic process // traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from sequence or structural similarity /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050796 // regulation of insulin secretion // traceable author statement /// 0061028 // establishment of endothelial barrier // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0071320 // cellular response to cAMP // inferred from direct assay /// 1901888 // regulation of cell junction assembly // inferred from mutant phenotype /// 1990090 // cellular response to nerve growth factor stimulus // inferred from sequence or structural similarity /// 2001214 // positive regulation of vasculogenesis // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from sequence or structural similarity /// 0032045 // guanyl-nucleotide exchange factor complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from direct assay /// 0017016 // Ras GTPase binding // inferred from electronic annotation /// 0017034 // Rap guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0032403 // protein complex binding // inferred from direct assay -4.72 326.46 -0.22 0.83 0.87 -4.62
208549_x_at 208549_x_at NM_016171 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016171.1 /DEF=Homo sapiens prothymosin a14 (LOC51685), mRNA. /FEA=CDS /GEN=LOC51685 /PROD=prothymosin a14 /DB_XREF=gi:7706414 /UG=Hs.247919 prothymosin a14 /FL=gb:AF170294.1 gb:NM_016171.1 NM_016171 prothymosin, alpha PTMA 5757 NM_001099285 /// NM_002823 0006351 // transcription, DNA-templated // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 30.38 916.24 0.22 0.83 0.87 -4.62
201754_at 201754_at NM_004374 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004374.1 /DEF=Homo sapiens cytochrome c oxidase subunit VIc (COX6C), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=COX6C /PROD=cytochrome c oxidase subunit VIc /DB_XREF=gi:4758039 /UG=Hs.74649 cytochrome c oxidase subunit VIc /FL=gb:BC000187.1 gb:NM_004374.1 NM_004374 cytochrome c oxidase subunit VIc COX6C 1345 NM_004374 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0022904 // respiratory electron transport chain // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 15.83 1091.26 0.22 0.83 0.87 -4.62
201245_s_at 201245_s_at AL523776 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523776 /FEA=EST /DB_XREF=gi:12787269 /DB_XREF=est:AL523776 /CLONE=CS0DC003YC23 (5 prime) /UG=Hs.108504 hypothetical protein FLJ20113 /FL=gb:NM_017670.1 AL523776 uncharacterized LOC101927673 /// OTU deubiquitinase, ubiquitin aldehyde binding 1 LOC101927673 /// OTUB1 55611 /// 101927673 NM_017670 /// NR_003089 /// XR_247234 /// XR_247664 /// XR_252904 0002376 // immune system process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from direct assay /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // inferred from direct assay /// 1901315 // negative regulation of histone H2A K63-linked ubiquitination // inferred from direct assay /// 2000780 // negative regulation of double-strand break repair // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019784 // NEDD8-specific protease activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0043130 // ubiquitin binding // inferred from direct assay 5.50 207.45 0.22 0.83 0.87 -4.62
207358_x_at 207358_x_at NM_012090 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_012090.1 /DEF=Homo sapiens actin binding protein; macrophin (microfilament and actin filament cross-linker protein) (ACF7), mRNA. /FEA=mRNA /GEN=ACF7 /PROD=actin binding protein; macrophin (microfilamentand actin filament cross-linker protein) /DB_XREF=gi:10048480 /UG=Hs.108258 actin binding protein; macrophin (microfilament and actin filament cross-linker protein) /FL=gb:NM_012090.1 gb:AF141968.1 NM_012090 microtubule-actin crosslinking factor 1 MACF1 23499 NM_012090 /// NM_033044 /// XM_005270694 /// XM_005270695 /// XM_005270696 /// XM_005270697 /// XM_005270698 /// XM_005270700 /// XM_006710519 /// XM_006710520 /// XM_006710521 /// XM_006710522 /// XM_006710523 /// XM_006710524 /// XM_006710525 /// XM_006710526 /// XM_006710527 /// XM_006710528 /// XM_006710529 /// XM_006710530 /// XM_006710531 /// XM_006710532 /// XM_006710533 /// XM_006710534 /// XM_006710535 /// XM_006710536 /// XM_006710537 /// XM_006710538 /// XM_006710539 /// XM_006710540 0001707 // mesoderm formation // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006620 // posttranslational protein targeting to membrane // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0010632 // regulation of epithelial cell migration // inferred from sequence or structural similarity /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from sequence or structural similarity /// 0032886 // regulation of microtubule-based process // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0043001 // Golgi to plasma membrane protein transport // inferred from direct assay /// 0051893 // regulation of focal adhesion assembly // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // non-traceable author statement /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // non-traceable author statement 19.12 396.59 0.22 0.83 0.87 -4.62
208238_x_at 208238_x_at NM_013344 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_013344.1 /DEF=Homo sapiens leucine zipper-like protein (LZLP), mRNA. /FEA=mRNA /GEN=LZLP /PROD=leucine zipper-like protein /DB_XREF=gi:7106350 /UG=Hs.278952 leucine zipper-like protein /FL=gb:AF159055.1 gb:NM_013344.1 NM_013344 4.30 151.53 0.22 0.84 0.87 -4.62
213313_at 213313_at AI922519 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI922519 /FEA=EST /DB_XREF=gi:5658483 /DB_XREF=est:wm89a07.x1 /CLONE=IMAGE:2443092 /UG=Hs.55099 rab6 GTPase activating protein (GAP and centrosome-associated) AI922519 RAB GTPase activating protein 1 RABGAP1 23637 NM_012197 /// XM_005251866 /// XM_005251868 /// XM_006717031 /// XM_006717032 0007049 // cell cycle // inferred from electronic annotation /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032851 // positive regulation of Rab GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005875 // microtubule associated complex // traceable author statement 0003677 // DNA binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015631 // tubulin binding // traceable author statement -3.07 231.39 -0.21 0.84 0.87 -4.62
217946_s_at 217946_s_at NM_016402 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016402.1 /DEF=Homo sapiens hypothetical protein (HSPC140), mRNA. /FEA=mRNA /GEN=HSPC140 /PROD=hypothetical protein /DB_XREF=gi:7705472 /UG=Hs.279868 hypothetical protein /FL=gb:BC003611.1 gb:AF161489.1 gb:NM_016402.1 NM_016402 SUMO1 activating enzyme subunit 1 SAE1 10055 NM_001145713 /// NM_001145714 /// NM_005500 /// NR_027280 /// XM_006722963 /// XM_006722964 /// XM_006722965 0006464 // cellular protein modification process // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // traceable author statement /// 0016925 // protein sumoylation // inferred from direct assay /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0016925 // protein sumoylation // traceable author statement /// 0019950 // SMT3-dependent protein catabolic process // not recorded /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004839 // ubiquitin activating enzyme activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0008047 // enzyme activator activity // traceable author statement /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019948 // SUMO activating enzyme activity // inferred from direct assay /// 0043008 // ATP-dependent protein binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // traceable author statement 8.88 469.56 0.21 0.84 0.87 -4.62
218777_at 218777_at NM_025232 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_025232.1 /DEF=Homo sapiens hypothetical protein FLJ22246 (FLJ22246), mRNA. /FEA=mRNA /GEN=FLJ22246 /PROD=hypothetical protein FLJ22246 /DB_XREF=gi:13376835 /UG=Hs.289063 hypothetical protein FLJ22246 /FL=gb:NM_025232.1 NM_025232 receptor accessory protein 4 REEP4 80346 NM_025232 /// XM_006716403 0006998 // nuclear envelope organization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007084 // mitotic nuclear envelope reassembly // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0008017 // microtubule binding // inferred from sequence or structural similarity -6.25 154.82 -0.21 0.84 0.87 -4.62
211980_at 211980_at AI922605 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI922605 /FEA=EST /DB_XREF=gi:5658569 /DB_XREF=est:wm90c05.x1 /CLONE=IMAGE:2443208 /UG=Hs.119129 collagen, type IV, alpha 1 /FL=gb:NM_001845.1 AI922605 collagen, type IV, alpha 1 COL4A1 1282 NM_001845 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from mutant phenotype /// 0007411 // axon guidance // traceable author statement /// 0007420 // brain development // inferred from mutant phenotype /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030574 // collagen catabolic process // traceable author statement /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from mutant phenotype /// 0061304 // retinal blood vessel morphogenesis // inferred from mutant phenotype /// 0061333 // renal tubule morphogenesis // inferred from mutant phenotype /// 0071230 // cellular response to amino acid stimulus // inferred from electronic annotation /// 0071711 // basement membrane organization // inferred from mutant phenotype 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005587 // collagen type IV trimer // inferred from mutant phenotype /// 0005604 // basement membrane // inferred by curator /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0031012 // extracellular matrix // inferred from sequence or structural similarity 0005201 // extracellular matrix structural constituent // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0030023 // extracellular matrix constituent conferring elasticity // inferred by curator /// 0048407 // platelet-derived growth factor binding // inferred from direct assay 30.75 1711.83 0.21 0.84 0.87 -4.62
200743_s_at 200743_s_at NM_000391 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000391.2 /DEF=Homo sapiens ceroid-lipofuscinosis, neuronal 2, late infantile (Jansky-Bielschowsky disease) (CLN2), mRNA. /FEA=mRNA /GEN=CLN2 /PROD=ceroid-lipofuscinosis, neuronal 2, lateinfantile (Jansky-Bielschowsky disease) /DB_XREF=gi:5597012 /UG=Hs.20478 ceroid-lipofuscinosis, neuronal 2, late infantile (Jansky-Bielschowsky disease) /FL=gb:AF017456.1 gb:NM_000391.2 NM_000391 tripeptidyl peptidase I TPP1 1200 NM_000391 0006508 // proteolysis // inferred from mutant phenotype /// 0006629 // lipid metabolic process // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0007040 // lysosome organization // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0030163 // protein catabolic process // non-traceable author statement /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0043171 // peptide catabolic process // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045453 // bone resorption // inferred from mutant phenotype /// 0050885 // neuromuscular process controlling balance // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from mutant phenotype /// 0042470 // melanosome // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // inferred from mutant phenotype /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from mutant phenotype /// 0008236 // serine-type peptidase activity // inferred from mutant phenotype /// 0008240 // tripeptidyl-peptidase activity // inferred from direct assay /// 0008240 // tripeptidyl-peptidase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 6.62 384.66 0.21 0.84 0.87 -4.62
202095_s_at 202095_s_at NM_001168 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001168.1 /DEF=Homo sapiens baculoviral IAP repeat-containing 5 (survivin) (BIRC5), mRNA. /FEA=mRNA /GEN=BIRC5 /PROD=baculoviral IAP repeat-containing protein 5 /DB_XREF=gi:4502144 /UG=Hs.1578 baculoviral IAP repeat-containing 5 (survivin) /FL=gb:NM_001168.1 gb:AF077350.1 NM_001168 baculoviral IAP repeat containing 5 BIRC5 332 NM_001012270 /// NM_001012271 /// NM_001168 /// XR_243654 0000086 // G2/M transition of mitotic cell cycle // inferred from direct assay /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0000910 // cytokinesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007067 // mitotic nuclear division // traceable author statement /// 0007166 // cell surface receptor signaling pathway // non-traceable author statement /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0031503 // protein complex localization // inferred from mutant phenotype /// 0031536 // positive regulation of exit from mitosis // inferred from mutant phenotype /// 0031577 // spindle checkpoint // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from direct assay /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043154 // negative regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptotic process // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0051301 // cell division // inferred from mutant phenotype /// 0051303 // establishment of chromosome localization // inferred from mutant phenotype 0000228 // nuclear chromosome // inferred from direct assay /// 0000775 // chromosome, centromeric region // inferred from direct assay /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005814 // centriole // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0031021 // interphase microtubule organizing center // inferred from direct assay /// 0032133 // chromosome passenger complex // inferred from physical interaction 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004872 // receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // non-traceable author statement /// 0008536 // Ran GTPase binding // inferred from physical interaction /// 0015631 // tubulin binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043027 // cysteine-type endopeptidase inhibitor activity involved in apoptotic process // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048037 // cofactor binding // inferred from direct assay /// 0050897 // cobalt ion binding // non-traceable author statement /// 0051087 // chaperone binding // inferred from physical interaction -5.18 114.21 -0.21 0.84 0.87 -4.62
209481_at 209481_at AF226044 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF226044.1 /DEF=Homo sapiens HSNFRK (HSNFRK) mRNA, complete cds. /FEA=mRNA /GEN=HSNFRK /PROD=HSNFRK /DB_XREF=gi:9295326 /UG=Hs.79025 KIAA0096 protein /FL=gb:AF226044.1 AF226044 SNF related kinase SNRK 54861 NM_001100594 /// NM_017719 /// XM_005265245 /// XM_005265246 0006468 // protein phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // traceable author statement 0005634 // nucleus // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 8.67 752.01 0.21 0.84 0.87 -4.62
217801_at 217801_at NM_006886 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006886.1 /DEF=Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit (ATP5E), mRNA. /FEA=mRNA /GEN=ATP5E /PROD=ATP synthase, H+ transporting, mitochondrial F1complex, epsilon subunit /DB_XREF=gi:5901895 /UG=Hs.177530 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit /FL=gb:BC001690.1 gb:BC003671.1 gb:AF077045.1 gb:NM_006886.1 gb:AF052955.1 NM_006886 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit ATP5E 514 NM_006886 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006457 // protein folding // traceable author statement /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0015914 // phospholipid transport // /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // /// 0005759 // mitochondrial matrix // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation /// 1990050 // phosphatidic acid transporter activity // -15.30 1070.40 -0.21 0.84 0.87 -4.62
203489_at 203489_at NM_006427 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_006427.2 /DEF=Homo sapiens CD27-binding (Siva) protein (SIVA), transcript variant 1, mRNA. /FEA=mRNA /GEN=SIVA /PROD=CD27-binding (Siva) protein isoform 1 /DB_XREF=gi:11277467 /UG=Hs.112058 CD27-binding (Siva) protein /FL=gb:NM_006427.2 gb:U82938.1 NM_006427 SIVA1, apoptosis-inducing factor SIVA1 10572 NM_006427 /// NM_021709 0006915 // apoptotic process // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // inferred from direct assay /// 0009615 // response to virus // inferred from sequence or structural similarity /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0097191 // extrinsic apoptotic signaling pathway // inferred from direct assay /// 0097193 // intrinsic apoptotic signaling pathway // inferred from direct assay /// 1901030 // positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0001618 // virus receptor activity // inferred from sequence or structural similarity /// 0005175 // CD27 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -4.60 183.50 -0.21 0.84 0.87 -4.62
215553_x_at 215553_x_at AK024315 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK024315.1 /DEF=Homo sapiens cDNA FLJ14253 fis, clone OVARC1001376. /FEA=mRNA /DB_XREF=gi:10436666 /UG=Hs.300694 Homo sapiens cDNA FLJ14253 fis, clone OVARC1001376 AK024315 -3.90 75.25 -0.21 0.84 0.87 -4.62
202059_s_at 202059_s_at NM_002264 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002264.1 /DEF=Homo sapiens karyopherin alpha 1 (importin alpha 5) (KPNA1), mRNA. /FEA=mRNA /GEN=KPNA1 /PROD=karyopherin alpha 1 /DB_XREF=gi:4504894 /UG=Hs.169149 karyopherin alpha 1 (importin alpha 5) /FL=gb:BC002374.1 gb:BC003009.1 gb:NM_002264.1 NM_002264 karyopherin alpha 1 (importin alpha 5) KPNA1 3836 NM_002264 /// NR_026698 /// XM_005247437 /// XM_005247439 0000018 // regulation of DNA recombination // traceable author statement /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006607 // NLS-bearing protein import into nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019058 // viral life cycle // traceable author statement /// 0019221 // cytokine-mediated signaling pathway // traceable author statement /// 0042307 // positive regulation of protein import into nucleus // inferred from sequence or structural similarity /// 0075733 // intracellular transport of virus // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005643 // nuclear pore // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0030425 // dendrite // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008139 // nuclear localization sequence binding // traceable author statement /// 0008565 // protein transporter activity // inferred from electronic annotation -8.27 236.76 -0.21 0.84 0.87 -4.62
211755_s_at 211755_s_at BC005960 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005960.1 /DEF=Homo sapiens, Similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1, clone MGC:14609, mRNA, complete cds. /FEA=mRNA /PROD=Similar to ATP synthase, H+ transporting,mitochondrial F0 complex, subunit b, isoform 1 /DB_XREF=gi:13543617 /FL=gb:BC005960.1 BC005960 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 ATP5F1 515 NM_001688 /// XM_005270929 0006200 // ATP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // not recorded /// 0015992 // proton transport // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0022904 // respiratory electron transport chain // traceable author statement /// 0042776 // mitochondrial ATP synthesis coupled proton transport // inferred by curator /// 0042776 // mitochondrial ATP synthesis coupled proton transport // traceable author statement /// 0044237 // cellular metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0005759 // mitochondrial matrix // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred by curator /// 0046933 // proton-transporting ATP synthase activity, rotational mechanism // not recorded 14.80 1291.82 0.21 0.84 0.87 -4.62
31861_at 31861_at L14754 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. L14754:Human DNA-binding protein (SMBP2) mRNA, complete cds /cds=(49,3030) /gb=L14754 /gi=401775 /ug=Hs.1521 /len=3892 L14754 immunoglobulin mu binding protein 2 IGHMBP2 3508 NM_002180 /// XM_005273974 /// XM_005273975 /// XM_005273976 /// XM_005273977 /// XR_247198 0006200 // ATP catabolic process // inferred from direct assay /// 0006260 // DNA replication // traceable author statement /// 0006281 // DNA repair // traceable author statement /// 0006310 // DNA recombination // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006412 // translation // non-traceable author statement /// 0008219 // cell death // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // inferred from direct assay /// 0032508 // DNA duplex unwinding // traceable author statement /// 0051260 // protein homooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0030424 // axon // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0032797 // SMN complex // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0000049 // tRNA binding // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003678 // DNA helicase activity // traceable author statement /// 0003697 // single-stranded DNA binding // traceable author statement /// 0003723 // RNA binding // inferred from direct assay /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0008094 // DNA-dependent ATPase activity // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008186 // RNA-dependent ATPase activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0032575 // ATP-dependent 5'-3' RNA helicase activity // inferred from direct assay /// 0043022 // ribosome binding // inferred from direct assay /// 0043141 // ATP-dependent 5'-3' DNA helicase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -4.63 173.14 -0.20 0.84 0.88 -4.62
38691_s_at 38691_s_at J03553 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. J03553:Human pulmonary surfactant protein (SP5) mRNA, complete cds /cds=(146,739) /gb=J03553 /gi=338306 /ug=Hs.1074 /len=963 J03553 surfactant protein C SFTPC 6440 NM_001172357 /// NM_001172410 /// NM_003018 /// XM_005273598 /// XM_006716379 /// XM_006716380 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009725 // response to hormone // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0033189 // response to vitamin A // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0070741 // response to interleukin-6 // inferred from electronic annotation /// 0070848 // response to growth factor // inferred from electronic annotation /// 0071260 // cellular response to mechanical stimulus // inferred from electronic annotation /// 0071732 // cellular response to nitric oxide // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from electronic annotation /// 0097208 // alveolar lamellar body // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation -3.08 55.64 -0.20 0.84 0.88 -4.62
220071_x_at 220071_x_at NM_018097 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_018097.1 /DEF=Homo sapiens hypothetical protein FLJ10460 (FLJ10460), mRNA. /FEA=mRNA /GEN=FLJ10460 /PROD=hypothetical protein FLJ10460 /DB_XREF=gi:8922429 /UG=Hs.14347 hypothetical protein FLJ10460 /FL=gb:NM_018097.1 NM_018097 HAUS augmin-like complex, subunit 2 HAUS2 55142 NM_001130447 /// NM_018097 /// XM_006720600 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from mutant phenotype /// 0051297 // centrosome organization // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0070652 // HAUS complex // inferred from direct assay 5.42 144.34 0.20 0.85 0.88 -4.62
210457_x_at 210457_x_at AF176039 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF176039.1 /DEF=Homo sapiens high mobility group protein-R mRNA, complete cds. /FEA=mRNA /PROD=high mobility group protein-R /DB_XREF=gi:5834272 /UG=Hs.139800 high-mobility group (nonhistone chromosomal) protein isoforms I and Y /FL=gb:AF176039.1 AF176039 high mobility group AT-hook 1 HMGA1 3159 NM_002131 /// NM_145899 /// NM_145901 /// NM_145902 /// NM_145903 /// NM_145904 /// NM_145905 /// XM_005249061 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0006268 // DNA unwinding involved in DNA replication // non-traceable author statement /// 0006284 // base-excision repair // inferred from direct assay /// 0006337 // nucleosome disassembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // traceable author statement /// 0006461 // protein complex assembly // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009615 // response to virus // inferred from expression pattern /// 0016032 // viral process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031936 // negative regulation of chromatin silencing // traceable author statement /// 0035986 // senescence-associated heterochromatin focus assembly // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0075713 // establishment of integrated proviral latency // traceable author statement /// 0090402 // oncogene-induced cell senescence // inferred from direct assay /// 2000774 // positive regulation of cellular senescence // inferred from mutant phenotype 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005667 // transcription factor complex // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0035985 // senescence-associated heterochromatin focus // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003680 // AT DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from mutant phenotype /// 0042974 // retinoic acid receptor binding // inferred from direct assay /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046965 // retinoid X receptor binding // inferred from direct assay /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from direct assay -4.92 88.44 -0.20 0.85 0.88 -4.62
203720_s_at 203720_s_at NM_001983 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001983.1 /DEF=Homo sapiens excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) (ERCC1), mRNA. /FEA=mRNA /GEN=ERCC1 /PROD=excision repair cross-complementing rodentrepair deficiency, complementation group 1 (includesoverlapping antisense sequence) /DB_XREF=gi:4503598 /UG=Hs.59544 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) /FL=gb:M28650.1 gb:AF001925.1 gb:NM_001983.1 gb:M13194.1 NM_001983 excision repair cross-complementation group 1 ERCC1 2067 NM_001166049 /// NM_001983 /// NM_202001 /// XM_005258634 /// XM_005258635 /// XM_005258636 /// XM_005258637 0000718 // nucleotide-excision repair, DNA damage removal // traceable author statement /// 0000720 // pyrimidine dimer repair by nucleotide-excision repair // inferred from electronic annotation /// 0000737 // DNA catabolic process, endonucleolytic // inferred from direct assay /// 0001302 // replicative cell aging // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006283 // transcription-coupled nucleotide-excision repair // traceable author statement /// 0006289 // nucleotide-excision repair // inferred from direct assay /// 0006289 // nucleotide-excision repair // inferred from genetic interaction /// 0006289 // nucleotide-excision repair // traceable author statement /// 0006295 // nucleotide-excision repair, DNA incision, 3'-to lesion // inferred from mutant phenotype /// 0006296 // nucleotide-excision repair, DNA incision, 5'-to lesion // inferred from mutant phenotype /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from genetic interaction /// 0006312 // mitotic recombination // inferred from mutant phenotype /// 0006949 // syncytium formation // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007281 // germ cell development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0009628 // response to abiotic stimulus // inferred from electronic annotation /// 0009650 // UV protection // inferred from electronic annotation /// 0009744 // response to sucrose // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0032205 // negative regulation of telomere maintenance // inferred from mutant phenotype /// 0035166 // post-embryonic hemopoiesis // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // inferred from electronic annotation /// 0045190 // isotype switching // inferred from electronic annotation /// 0048468 // cell development // inferred from electronic annotation /// 0048477 // oogenesis // inferred from electronic annotation /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation /// 0090305 // nucleic acid phosphodiester bond hydrolysis // inferred from electronic annotation 0000109 // nucleotide-excision repair complex // inferred from direct assay /// 0000784 // nuclear chromosome, telomeric region // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000014 // single-stranded DNA endodeoxyribonuclease activity // inferred from direct assay /// 0001094 // TFIID-class transcription factor binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017025 // TBP-class protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043566 // structure-specific DNA binding // inferred from direct assay -4.42 162.71 -0.20 0.85 0.88 -4.62
214052_x_at 214052_x_at AW301305 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW301305 /FEA=EST /DB_XREF=gi:6710982 /DB_XREF=est:xs75a07.x1 /CLONE=IMAGE:2775444 /UG=Hs.69559 KIAA1096 protein AW301305 proline-rich coiled-coil 2C PRRC2C 23215 NM_015172 /// XM_005245015 /// XM_005245016 /// XM_005245017 /// XM_005245018 /// XM_005245019 /// XM_005245020 /// XM_005245022 /// XM_005245023 /// XM_005245024 /// XM_005245025 /// XM_005245026 /// XM_005245027 /// XM_005245028 /// XM_005245029 /// XM_005245030 /// XM_006711238 /// XM_006711239 0008022 // protein C-terminus binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 3.43 66.04 0.20 0.85 0.88 -4.62
218143_s_at 218143_s_at NM_005697 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005697.2 /DEF=Homo sapiens secretory carrier membrane protein 2 (SCAMP2), mRNA. /FEA=mRNA /GEN=SCAMP2 /PROD=secretory carrier membrane protein 2 /DB_XREF=gi:5730030 /UG=Hs.238030 secretory carrier membrane protein 2 /FL=gb:BC001376.1 gb:BC004385.1 gb:AF005038.2 gb:NM_005697.2 NM_005697 secretory carrier membrane protein 2 SCAMP2 10066 NM_005697 /// XM_006720369 0006810 // transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from direct assay /// 0030133 // transport vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0055038 // recycling endosome membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 4.00 227.88 0.20 0.85 0.88 -4.62
201971_s_at 201971_s_at NM_001690 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001690.1 /DEF=Homo sapiens ATPase, H+ transporting, lysosomal (vacuolar proton pump), alpha polypeptide, 70kD, isoform 1 (ATP6A1), mRNA. /FEA=mRNA /GEN=ATP6A1 /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump), alpha polypeptide, 70kD, isoform 1 /DB_XREF=gi:4502304 /UG=Hs.281866 ATPase, H+ transporting, lysosomal (vacuolar proton pump), alpha polypeptide, 70kD, isoform 1 /FL=gb:L09235.1 gb:NM_001690.1 gb:AF113129.1 NM_001690 ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A ATP6V1A 523 NM_001690 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0033572 // transferrin transport // traceable author statement /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // traceable author statement /// 0005902 // microvillus // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016469 // proton-transporting two-sector ATPase complex // traceable author statement /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation -3.62 136.11 -0.20 0.85 0.88 -4.62
212123_at 212123_at AL050022 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL050022.1 /DEF=Homo sapiens mRNA; cDNA DKFZp564D116 (from clone DKFZp564D116); partial cds. /FEA=mRNA /GEN=DKFZp564D116 /PROD=hypothetical protein /DB_XREF=gi:4884091 /UG=Hs.181185 DKFZP564D116 protein AL050022 tectonic family member 3 TCTN3 26123 NM_001143973 /// NM_015631 /// XM_005269690 0006915 // apoptotic process // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from mutant phenotype /// 0030030 // cell projection organization // inferred from electronic annotation /// 0060271 // cilium morphogenesis // inferred from sequence or structural similarity 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 4.43 163.84 0.20 0.85 0.88 -4.62
212254_s_at 212254_s_at AI798790 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI798790 /FEA=EST /DB_XREF=gi:5364262 /DB_XREF=est:we92f11.x1 /CLONE=IMAGE:2348589 /UG=Hs.198689 KIAA0728 protein AI798790 dystonin DST 667 NM_001144769 /// NM_001144770 /// NM_001144771 /// NM_001723 /// NM_015548 /// NM_020388 /// NM_183380 /// XM_005249310 /// XM_005249311 /// XM_005249312 /// XM_005249313 /// XM_005249314 /// XM_005249315 /// XM_005249316 /// XM_005249317 /// XM_005249318 /// XM_005249319 /// XM_005249320 /// XM_005249322 /// XM_005249323 /// XM_005249324 /// XM_005249325 /// XM_005249326 /// XM_006715169 0000226 // microtubule cytoskeleton organization // inferred from direct assay /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006620 // posttranslational protein targeting to membrane // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // non-traceable author statement /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0009611 // response to wounding // inferred from direct assay /// 0016055 // Wnt signaling pathway // inferred from electronic annotation /// 0030011 // maintenance of cell polarity // inferred from mutant phenotype /// 0030198 // extracellular matrix organization // traceable author statement /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // inferred from direct assay /// 0045104 // intermediate filament cytoskeleton organization // inferred from expression pattern /// 0045104 // intermediate filament cytoskeleton organization // inferred from sequence or structural similarity /// 0045104 // intermediate filament cytoskeleton organization // non-traceable author statement /// 0048870 // cell motility // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005604 // basement membrane // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0009925 // basal plasma membrane // non-traceable author statement /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from direct assay /// 0030056 // hemidesmosome // traceable author statement /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from direct assay /// 0031673 // H zone // inferred from electronic annotation /// 0035371 // microtubule plus-end // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from direct assay /// 0060053 // neurofilament cytoskeleton // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016887 // ATPase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from direct assay -9.00 298.93 -0.19 0.85 0.88 -4.62
202100_at 202100_at BG169673 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG169673 /FEA=EST /DB_XREF=gi:12676376 /DB_XREF=est:602324650F1 /CLONE=IMAGE:4427484 /UG=Hs.250811 v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) /FL=gb:M35416.1 gb:NM_002881.1 BG169673 v-ral simian leukemia viral oncogene homolog B RALB 5899 NM_002881 /// XM_005263724 /// XM_005263727 /// XM_005263728 /// XM_005263729 0000910 // cytokinesis // inferred from direct assay /// 0001928 // regulation of exocyst assembly // inferred from sequence or structural similarity /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0060178 // regulation of exocyst localization // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay -8.07 339.79 -0.19 0.85 0.88 -4.62
212307_s_at 212307_s_at BF001665 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF001665 /FEA=EST /DB_XREF=gi:10701940 /DB_XREF=est:7g91d11.x1 /CLONE=IMAGE:3313845 /UG=Hs.100293 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) BF001665 O-linked N-acetylglucosamine (GlcNAc) transferase OGT 8473 NM_003605 /// NM_181672 /// NM_181673 /// XM_005262308 /// XM_006724714 0006110 // regulation of glycolytic process // inferred from direct assay /// 0006325 // chromatin organization // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0006493 // protein O-linked glycosylation // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007584 // response to nutrient // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030854 // positive regulation of granulocyte differentiation // inferred from mutant phenotype /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032868 // response to insulin // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0035020 // regulation of Rac protein signal transduction // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043981 // histone H4-K5 acetylation // inferred from direct assay /// 0043982 // histone H4-K8 acetylation // inferred from direct assay /// 0043984 // histone H4-K16 acetylation // inferred from direct assay /// 0045862 // positive regulation of proteolysis // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046626 // regulation of insulin receptor signaling pathway // inferred from direct assay /// 0048015 // phosphatidylinositol-mediated signaling // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from direct assay /// 0061087 // positive regulation of histone H3-K27 methylation // inferred from mutant phenotype /// 0071300 // cellular response to retinoic acid // inferred from mutant phenotype /// 0080182 // histone H3-K4 trimethylation // inferred from mutant phenotype /// 0090526 // regulation of gluconeogenesis involved in cellular glucose homeostasis // inferred from sequence or structural similarity 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070688 // MLL5-L complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // traceable author statement /// 0016262 // protein N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043995 // histone acetyltransferase activity (H4-K5 specific) // inferred from direct assay /// 0043996 // histone acetyltransferase activity (H4-K8 specific) // inferred from direct assay /// 0046972 // histone acetyltransferase activity (H4-K16 specific) // inferred from direct assay /// 0097363 // protein O-GlcNAc transferase activity // inferred from sequence or structural similarity 3.28 88.81 0.19 0.85 0.88 -4.62
213872_at 213872_at BE465032 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE465032 /FEA=EST /DB_XREF=gi:9510807 /DB_XREF=est:hv76g09.x1 /CLONE=IMAGE:3179392 /UG=Hs.173685 hypothetical protein FLJ12619 BE465032 -28.05 861.58 -0.19 0.85 0.88 -4.62
218010_x_at 218010_x_at NM_024299 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024299.1 /DEF=Homo sapiens hypothetical protein MGC2479 (MGC2479), mRNA. /FEA=mRNA /GEN=MGC2479 /PROD=hypothetical protein MGC2479 /DB_XREF=gi:13236523 /UG=Hs.79625 hypothetical protein MGC2479 /FL=gb:BC002531.1 gb:NM_024299.1 NM_024299 pancreatic progenitor cell differentiation and proliferation factor PPDPF 79144 NM_024299 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation -3.68 144.86 -0.19 0.85 0.88 -4.62
121_at 121_at X69699 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank X69699 /FEATURE= /DEFINITION=HSPAX8A H.sapiens Pax8 mRNA X69699 paired box 8 PAX8 7849 NM_003466 /// NM_013951 /// NM_013952 /// NM_013953 /// NM_013992 0001655 // urogenital system development // inferred from sequence or structural similarity /// 0001656 // metanephros development // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from expression pattern /// 0001822 // kidney development // inferred from expression pattern /// 0001823 // mesonephros development // inferred from sequence or structural similarity /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from expression pattern /// 0006351 // transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern /// 0009653 // anatomical structure morphogenesis // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030878 // thyroid gland development // inferred from expression pattern /// 0030878 // thyroid gland development // inferred from mutant phenotype /// 0038194 // thyroid-stimulating hormone signaling pathway // traceable author statement /// 0039003 // pronephric field specification // inferred from sequence or structural similarity /// 0042472 // inner ear morphogenesis // inferred from sequence or structural similarity /// 0042981 // regulation of apoptotic process // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048793 // pronephros development // inferred from sequence or structural similarity /// 0071371 // cellular response to gonadotropin stimulus // inferred from direct assay /// 0071599 // otic vesicle development // inferred from expression pattern /// 0072050 // S-shaped body morphogenesis // inferred from electronic annotation /// 0072073 // kidney epithelium development // inferred from electronic annotation /// 0072108 // positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from sequence or structural similarity /// 0072164 // mesonephric tubule development // inferred from electronic annotation /// 0072207 // metanephric epithelium development // inferred from expression pattern /// 0072221 // metanephric distal convoluted tubule development // inferred from sequence or structural similarity /// 0072278 // metanephric comma-shaped body morphogenesis // inferred from expression pattern /// 0072284 // metanephric S-shaped body morphogenesis // inferred from expression pattern /// 0072289 // metanephric nephron tubule formation // inferred from sequence or structural similarity /// 0072305 // negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis // inferred from sequence or structural similarity /// 0072307 // regulation of metanephric nephron tubule epithelial cell differentiation // inferred from sequence or structural similarity /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 1900212 // negative regulation of mesenchymal cell apoptotic process involved in metanephros development // inferred from sequence or structural similarity /// 1900215 // negative regulation of apoptotic process involved in metanephric collecting duct development // inferred from sequence or structural similarity /// 1900218 // negative regulation of apoptotic process involved in metanephric nephron tubule development // inferred from sequence or structural similarity /// 2000594 // positive regulation of metanephric DCT cell differentiation // inferred from sequence or structural similarity /// 2000611 // positive regulation of thyroid hormone generation // inferred from mutant phenotype /// 2000612 // regulation of thyroid-stimulating hormone secretion // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0004996 // thyroid-stimulating hormone receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay -4.68 299.81 -0.19 0.85 0.88 -4.62
208704_x_at 208704_x_at BC000373 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC000373.1 /DEF=Homo sapiens, Similar to amyloid beta (A4) precursor-like protein 2, clone MGC:8371, mRNA, complete cds. /FEA=mRNA /PROD=Similar to amyloid beta (A4) precursor-likeprotein 2 /DB_XREF=gi:12653210 /UG=Hs.279518 amyloid beta (A4) precursor-like protein 2 /FL=gb:BC000373.1 BC000373 amyloid beta (A4) precursor-like protein 2 APLP2 334 NM_001142276 /// NM_001142277 /// NM_001142278 /// NM_001243299 /// NM_001642 /// NR_024515 /// NR_024516 0001967 // suckling behavior // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor-activated receptor activity // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // non-traceable author statement /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030901 // midbrain development // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // non-traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003677 // DNA binding // non-traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046914 // transition metal ion binding // inferred from electronic annotation 17.90 1411.22 0.19 0.85 0.88 -4.62
55583_at 55583_at AI198543 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. AI198543:qf49f11.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-1753389 /clone_end=3' /gb=AI198543 /gi=3751149 /ug=Hs.8982 /len=794 AI198543 dedicator of cytokinesis 6 DOCK6 57572 NM_020812 /// XM_005260000 /// XM_005260001 /// XM_006722802 /// XM_006722803 /// XM_006722804 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 5.93 217.19 0.19 0.85 0.88 -4.62
212140_at 212140_at AB014548 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB014548.1 /DEF=Homo sapiens mRNA for KIAA0648 protein, partial cds. /FEA=mRNA /GEN=KIAA0648 /PROD=KIAA0648 protein /DB_XREF=gi:3327109 /UG=Hs.31921 KIAA0648 protein AB014548 PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) PDS5A 23244 NM_001100399 /// NM_001100400 /// NM_015200 /// XM_005262652 0000278 // mitotic cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -4.03 220.34 -0.19 0.85 0.88 -4.62
203821_at 203821_at NM_001945 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001945.1 /DEF=Homo sapiens diphtheria toxin receptor (heparin-binding epidermal growth factor-like growth factor) (DTR), mRNA. /FEA=mRNA /GEN=DTR /PROD=diphtheria toxin receptor (heparin-bindingepidermal growth factor-like growth factor) /DB_XREF=gi:4503412 /UG=Hs.799 diphtheria toxin receptor (heparin-binding epidermal growth factor-like growth factor) /FL=gb:M60278.1 gb:NM_001945.1 NM_001945 heparin-binding EGF-like growth factor HBEGF 1839 NM_001945 0007165 // signal transduction // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007517 // muscle organ development // traceable author statement /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0016477 // cell migration // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0035313 // wound healing, spreading of epidermal cells // inferred from electronic annotation /// 0038095 // Fc-epsilon receptor signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048015 // phosphatidylinositol-mediated signaling // traceable author statement /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0051545 // negative regulation of elastin biosynthetic process // inferred from electronic annotation /// 0051549 // positive regulation of keratinocyte migration // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling // inferred from mutant phenotype /// 0090303 // positive regulation of wound healing // inferred from mutant phenotype 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral component of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008201 // heparin binding // inferred from mutant phenotype 7.20 259.45 0.19 0.86 0.88 -4.62
212296_at 212296_at NM_005805 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_005805.1 /DEF=Homo sapiens 26S proteasome-associated pad1 homolog (POH1), mRNA. /FEA=CDS /GEN=POH1 /PROD=26S proteasome-associated pad1 homolog /DB_XREF=gi:5031980 /UG=Hs.178761 26S proteasome-associated pad1 homolog /FL=gb:U86782.1 gb:NM_005805.1 NM_005805 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 PSMD14 10213 NM_005805 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0000724 // double-strand break repair via homologous recombination // inferred from mutant phenotype /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010950 // positive regulation of endopeptidase activity // inferred from mutant phenotype /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0061136 // regulation of proteasomal protein catabolic process // inferred from mutant phenotype /// 0070536 // protein K63-linked deubiquitination // inferred from mutant phenotype /// 0070536 // protein K63-linked deubiquitination // traceable author statement 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0008541 // proteasome regulatory particle, lid subcomplex // inferred from mutant phenotype /// 0022624 // proteasome accessory complex // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004221 // ubiquitin thiolesterase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0061133 // endopeptidase activator activity // inferred from mutant phenotype /// 0070628 // proteasome binding // inferred from direct assay 9.20 771.62 0.19 0.86 0.89 -4.62
210935_s_at 210935_s_at AF274954 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF274954.1 /DEF=Homo sapiens PNAS-29 mRNA, complete cds. /FEA=mRNA /PROD=PNAS-29 /DB_XREF=gi:12751070 /UG=Hs.326791 Homo sapiens PNAS-29 mRNA, complete cds /FL=gb:AF274954.1 AF274954 WD repeat domain 1 WDR1 9948 NM_005112 /// NM_017491 /// XM_006713988 0002576 // platelet degranulation // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007605 // sensory perception of sound // traceable author statement /// 0030168 // platelet activation // traceable author statement 0002102 // podosome // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 6.32 231.89 0.19 0.86 0.89 -4.62
219329_s_at 219329_s_at NM_016085 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016085.1 /DEF=Homo sapiens apoptosis related protein APR-3 (APR-3), mRNA. /FEA=mRNA /GEN=APR-3 /PROD=apoptosis related protein APR-3 /DB_XREF=gi:7706360 /UG=Hs.9527 apoptosis related protein APR-3 /FL=gb:AF144055.2 gb:NM_016085.1 NM_016085 all-trans retinoic acid-induced differentiation factor ATRAID 51374 NM_001170795 /// NM_016085 /// NM_080592 0010468 // regulation of gene expression // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from direct assay /// 0033689 // negative regulation of osteoblast proliferation // inferred from direct assay /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 2000599 // negative regulation of cyclin catabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction -3.42 397.91 -0.19 0.86 0.89 -4.62
211987_at 211987_at NM_001068 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:NM_001068.1 /DEF=Homo sapiens topoisomerase (DNA) II beta (180kD) (TOP2B), mRNA. /FEA=CDS /GEN=TOP2B /PROD=topoisomerase (DNA) II beta (180kD) /DB_XREF=gi:11225253 /UG=Hs.75248 topoisomerase (DNA) II beta (180kD) /FL=gb:NM_001068.1 NM_001068 topoisomerase (DNA) II beta 180kDa TOP2B 7155 NM_001068 /// XM_005265427 /// XR_427287 0000712 // resolution of meiotic recombination intermediates // not recorded /// 0000819 // sister chromatid segregation // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // /// 0006265 // DNA topological change // inferred from direct assay /// 0006268 // DNA unwinding involved in DNA replication // not recorded /// 0006312 // mitotic recombination // not recorded /// 0007059 // chromosome segregation // /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0044774 // mitotic DNA integrity checkpoint // not recorded 0000792 // heterochromatin // inferred from direct assay /// 0000795 // synaptonemal complex // /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0009295 // nucleoid // not recorded /// 0009330 // DNA topoisomerase complex (ATP-hydrolyzing) // not recorded /// 0071778 // WINAC complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase type II (ATP-hydrolyzing) activity // inferred from direct assay /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008301 // DNA binding, bending // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction -6.88 289.66 -0.19 0.86 0.89 -4.62
212608_s_at 212608_s_at W85912 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:W85912 /FEA=EST /DB_XREF=gi:1398341 /DB_XREF=est:zh52b12.s1 /CLONE=IMAGE:415679 /UG=Hs.323470 Homo sapiens cDNA: FLJ22106 fis, clone HEP17675 W85912 nudix (nucleoside diphosphate linked moiety X)-type motif 3 NUDT3 11165 NM_006703 0007267 // cell-cell signaling // traceable author statement /// 0015961 // diadenosine polyphosphate catabolic process // traceable author statement /// 0043647 // inositol phosphate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0052840 // inositol diphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052841 // inositol bisdiphosphate tetrakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052842 // inositol diphosphate pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052843 // inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052844 // inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052845 // inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity // inferred from electronic annotation /// 0052846 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity // inferred from electronic annotation /// 0052847 // inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation /// 0052848 // inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity // inferred from electronic annotation -4.27 174.41 -0.19 0.86 0.89 -4.62
201617_x_at 201617_x_at NM_004342 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004342.2 /DEF=Homo sapiens caldesmon 1 (CALD1), mRNA. /FEA=mRNA /GEN=CALD1 /PROD=caldesmon 1 /DB_XREF=gi:11091984 /UG=Hs.325474 caldesmon 1 /FL=gb:NM_004342.2 gb:M64110.1 NM_004342 caldesmon 1 CALD1 800 NM_004342 /// NM_033138 /// NM_033139 /// NM_033140 /// NM_033157 /// XM_006716136 /// XM_006716137 /// XM_006716138 /// XM_006716139 0006928 // cellular component movement // traceable author statement /// 0006936 // muscle contraction // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030478 // actin cap // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // traceable author statement /// 0017022 // myosin binding // inferred from electronic annotation 8.45 306.07 0.18 0.86 0.89 -4.62
212338_at 212338_at AA621962 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AA621962 /FEA=EST /DB_XREF=gi:2525838 /DB_XREF=est:nq24b02.s1 /CLONE=IMAGE:1144779 /UG=Hs.39871 KIAA0727 protein AA621962 myosin ID MYO1D 4642 NM_015194 0006200 // ATP catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010923 // negative regulation of phosphatase activity // inferred from direct assay /// 0061502 // early endosome to recycling endosome transport // inferred from sequence or structural similarity 0005768 // endosome // inferred from sequence or structural similarity /// 0005790 // smooth endoplasmic reticulum // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0030673 // axolemma // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation -3.10 148.78 -0.18 0.86 0.89 -4.62
214042_s_at 214042_s_at AW071997 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AW071997 /FEA=EST /DB_XREF=gi:6026995 /DB_XREF=est:ws57f09.x1 /CLONE=IMAGE:2501321 /UG=Hs.326249 Homo sapiens mRNA; cDNA DKFZp586E0524 (from clone DKFZp586E0524) AW071997 ribosomal protein L22 RPL22 6146 NM_000983 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // traceable author statement /// 0006412 // translation // non-traceable author statement /// 0006412 // translation // traceable author statement /// 0006413 // translational initiation // traceable author statement /// 0006414 // translational elongation // traceable author statement /// 0006415 // translational termination // traceable author statement /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019058 // viral life cycle // traceable author statement /// 0019083 // viral transcription // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0046632 // alpha-beta T cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008201 // heparin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay -8.22 591.99 -0.18 0.86 0.89 -4.62
218030_at 218030_at NM_014030 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014030.1 /DEF=Homo sapiens G protein-coupled receptor kinase-interactor 1 (GIT1), mRNA. /FEA=mRNA /GEN=GIT1 /PROD=G protein-coupled receptor kinase-interactor 1 /DB_XREF=gi:7661711 /UG=Hs.318339 G protein-coupled receptor kinase-interactor 1 /FL=gb:AF124490.1 gb:NM_014030.1 NM_014030 G protein-coupled receptor kinase interacting ArfGAP 1 GIT1 28964 NM_001085454 /// NM_014030 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016235 // aggresome // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -4.47 124.11 -0.18 0.86 0.89 -4.62
201765_s_at 201765_s_at AL523158 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL523158 /FEA=EST /DB_XREF=gi:12786651 /DB_XREF=est:AL523158 /CLONE=CS0DC001YM06 (3 prime) /UG=Hs.119403 hexosaminidase A (alpha polypeptide) /FL=gb:NM_000520.2 AL523158 hexosaminidase A (alpha polypeptide) HEXA 3073 NM_000520 0001501 // skeletal system development // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0006689 // ganglioside catabolic process // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0019915 // lipid storage // inferred from electronic annotation /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030207 // chondroitin sulfate catabolic process // traceable author statement /// 0030212 // hyaluronan metabolic process // traceable author statement /// 0030214 // hyaluronan catabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0042340 // keratan sulfate catabolic process // traceable author statement /// 0042552 // myelination // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0048667 // cell morphogenesis involved in neuron differentiation // inferred from electronic annotation /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004563 // beta-N-acetylhexosaminidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay -3.33 164.54 -0.18 0.86 0.89 -4.62
219807_x_at 219807_x_at NM_016154 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016154.1 /DEF=Homo sapiens ras-related GTP-binding protein 4b (RAB4B), mRNA. /FEA=mRNA /GEN=RAB4B /PROD=ras-related GTP-binding protein 4b /DB_XREF=gi:7706672 /UG=Hs.279771 Homo sapiens TR00071289_m (RAB4B), mRNA /FL=gb:AF165522.1 gb:NM_016154.1 NM_016154 MIA-RAB4B readthrough (NMD candidate) /// RAB4B, member RAS oncogene family MIA-RAB4B /// RAB4B 53916 /// 100529262 NM_016154 /// NR_037775 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0046323 // glucose import // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032593 // insulin-responsive compartment // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0055037 // recycling endosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 3.27 43.34 0.18 0.86 0.89 -4.62
218950_at 218950_at NM_022481 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_022481.1 /DEF=Homo sapiens hypothetical protein FLJ21065 (FLJ21065), mRNA. /FEA=mRNA /GEN=FLJ21065 /PROD=hypothetical protein FLJ21065 /DB_XREF=gi:11968032 /UG=Hs.25277 hypothetical protein FLJ21065 /FL=gb:NM_022481.1 NM_022481 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 ARAP3 64411 NM_022481 /// XM_005268497 /// XM_005268498 /// XM_005268499 /// XM_005268500 /// XM_006714791 /// XM_006714792 /// XM_006714793 0007010 // cytoskeleton organization // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0008360 // regulation of cell shape // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0035021 // negative regulation of Rac protein signal transduction // inferred from electronic annotation /// 0035024 // negative regulation of Rho protein signal transduction // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement 0001726 // ruffle // inferred from sequence or structural similarity /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred by curator /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008060 // ARF GTPase activator activity // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030675 // Rac GTPase activator activity // inferred from sequence or structural similarity /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 3.95 253.72 0.18 0.86 0.89 -4.62
212959_s_at 212959_s_at AK001821 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK001821.1 /DEF=Homo sapiens cDNA FLJ10959 fis, clone PLACE1000562. /FEA=mRNA /DB_XREF=gi:7023328 /UG=Hs.7041 hypothetical protein DKFZp762B226 AK001821 N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits GNPTAB 79158 NM_024312 /// XM_006719593 0007040 // lysosome organization // inferred from mutant phenotype /// 0009306 // protein secretion // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // inferred from direct assay 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003976 // UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 4.78 163.81 0.18 0.86 0.89 -4.62
218193_s_at 218193_s_at NM_016072 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016072.1 /DEF=Homo sapiens CGI-141 protein (LOC51026), mRNA. /FEA=mRNA /GEN=LOC51026 /PROD=CGI-141 protein /DB_XREF=gi:7705635 /UG=Hs.62275 CGI-141 protein /FL=gb:AF151899.1 gb:AL136571.1 gb:NM_016072.1 NM_016072 golgi transport 1B GOLT1B 51026 NM_016072 0006810 // transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from mutant phenotype -6.12 228.74 -0.17 0.87 0.89 -4.62
201807_at 201807_at NM_004896 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004896.1 /DEF=Homo sapiens vacuolar protein sorting 26 (yeast homolog) (VPS26), mRNA. /FEA=mRNA /GEN=VPS26 /PROD=vacuolar protein sorting 26 (yeast homolog) /DB_XREF=gi:4758509 /UG=Hs.67052 vacuolar protein sorting 26 (yeast homolog) /FL=gb:AF054179.1 gb:NM_004896.1 gb:AF175266.1 NM_004896 vacuolar protein sorting 26 homolog A (S. pombe) VPS26A 9559 NM_001035260 /// NM_004896 0006810 // transport // inferred from electronic annotation /// 0007034 // vacuolar transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030904 // retromer complex // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // non-traceable author statement -4.18 487.06 -0.17 0.87 0.89 -4.62
204482_at 204482_at NM_003277 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003277.1 /DEF=Homo sapiens claudin 5 (transmembrane protein deleted in velocardiofacial syndrome) (CLDN5), mRNA. /FEA=mRNA /GEN=CLDN5 /PROD=transmembrane protein claudin 5 /DB_XREF=gi:4502878 /UG=Hs.110903 claudin 5 (transmembrane protein deleted in velocardiofacial syndrome) /FL=gb:BC002404.1 gb:AF000959.1 gb:NM_003277.1 NM_003277 claudin 5 CLDN5 7122 NM_001130861 /// NM_003277 /// XM_005261272 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0033270 // paranode region of axon // inferred from electronic annotation /// 0043220 // Schmidt-Lanterman incisure // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from sequence or structural similarity -7.70 183.58 -0.17 0.87 0.90 -4.62
212724_at 212724_at BG054844 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG054844 /FEA=EST /DB_XREF=gi:12511973 /DB_XREF=est:nac90f11.x1 /CLONE=IMAGE:3441573 /UG=Hs.6838 ras homolog gene family, member E /FL=gb:NM_005168.1 BG054844 Rho family GTPase 3 RND3 390 NM_001254738 /// NM_005168 0006184 // GTP catabolic process // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 8.98 852.94 0.17 0.87 0.90 -4.62
217419_x_at 217419_x_at AK021586 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AK021586.1 /DEF=Homo sapiens cDNA FLJ11524 fis, clone HEMBA1002547, highly similar to Homo sapiens agrin precursor mRNA. /FEA=mRNA /DB_XREF=gi:10432794 /UG=Hs.273330 Homo sapiens, clone IMAGE:3506210, mRNA, partial cds AK021586 agrin AGRN 375790 NM_198576 /// XM_005244749 /// XM_006710633 /// XM_006710634 /// XM_006710635 /// XM_006710636 /// XM_006710637 0001523 // retinoid metabolic process // traceable author statement /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0007009 // plasma membrane organization // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007213 // G-protein coupled acetylcholine receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0008582 // regulation of synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0032321 // positive regulation of Rho GTPase activity // inferred from sequence or structural similarity /// 0043113 // receptor clustering // inferred from direct assay /// 0043113 // receptor clustering // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptotic process // inferred from electronic annotation /// 0044281 // small molecule metabolic process // traceable author statement /// 0045162 // clustering of voltage-gated sodium channels // traceable author statement /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045887 // positive regulation of synaptic growth at neuromuscular junction // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0050808 // synapse organization // traceable author statement /// 0051491 // positive regulation of filopodium assembly // inferred from sequence or structural similarity 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // traceable author statement /// 0043202 // lysosomal lumen // traceable author statement /// 0045202 // synapse // inferred from sequence or structural similarity /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0002162 // dystroglycan binding // inferred from sequence or structural similarity /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0030548 // acetylcholine receptor regulator activity // inferred from electronic annotation /// 0033691 // sialic acid binding // inferred from sequence or structural similarity /// 0035374 // chondroitin sulfate binding // inferred from sequence or structural similarity /// 0043236 // laminin binding // traceable author statement /// 0043395 // heparan sulfate proteoglycan binding // inferred from sequence or structural similarity -3.83 163.44 -0.17 0.87 0.90 -4.62
211573_x_at 211573_x_at M98478 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M98478.1 /DEF=Human transglutaminase mRNA, complete cds. /FEA=mRNA /PROD=transglutaminase /DB_XREF=gi:339577 /UG=Hs.8265 transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) /FL=gb:M98478.1 M98478 transglutaminase 2 TGM2 7052 NM_004613 /// NM_198951 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0007200 // phospholipase C-activating G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018153 // isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine // inferred from electronic annotation /// 0032471 // negative regulation of endoplasmic reticulum calcium ion concentration // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// 0043277 // apoptotic cell clearance // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from sequence or structural similarity /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// 0051561 // positive regulation of mitochondrial calcium ion concentration // inferred from mutant phenotype /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060662 // salivary gland cavitation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from mutant phenotype /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -4.07 211.76 -0.17 0.87 0.90 -4.62
209181_s_at 209181_s_at U49245 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U49245.1 /DEF=Human geranylgeranyl transferase type II beta-subunit mRNA, complete cds. /FEA=mRNA /PROD=geranylgeranyl transferase type II beta-subunit /DB_XREF=gi:1216503 /UG=Hs.78948 Rab geranylgeranyltransferase, beta subunit /FL=gb:U49245.1 gb:NM_004582.1 U49245 Rab geranylgeranyltransferase, beta subunit /// small nucleolar RNA, C/D box 45A /// small nucleolar RNA, C/D box 45B /// small nucleolar RNA, C/D box 45C RABGGTB /// SNORD45A /// SNORD45B /// SNORD45C 5876 /// 26804 /// 26805 /// 692085 NM_004582 /// NR_002748 /// NR_002749 /// NR_003042 /// NR_073562 0006464 // cellular protein modification process // non-traceable author statement /// 0007601 // visual perception // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0018344 // protein geranylgeranylation // inferred from sequence or structural similarity 0005968 // Rab-protein geranylgeranyltransferase complex // inferred from sequence or structural similarity 0003824 // catalytic activity // inferred from electronic annotation /// 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004663 // Rab geranylgeranyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 5.27 384.36 0.17 0.87 0.90 -4.62
210042_s_at 210042_s_at AF073890 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF073890.1 /DEF=Homo sapiens cathepsin X precursor, mRNA, complete cds. /FEA=mRNA /PROD=cathepsin X precursor /DB_XREF=gi:3650497 /UG=Hs.252549 cathepsin Z /FL=gb:AF032906.1 gb:AF073890.1 gb:NM_001336.1 gb:AF136273.1 AF073890 cathepsin Z CTSZ 1522 NM_001336 0002003 // angiotensin maturation // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // traceable author statement /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 9.48 83.99 0.16 0.88 0.90 -4.62
204716_at 204716_at NM_005436 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005436.1 /DEF=Homo sapiens DNA segment, single copy, probe pH4 (transforming sequence, thyroid-1, (D10S170), mRNA. /FEA=mRNA /GEN=D10S170 /PROD=DNA segment, single copy, probe pH4(transforming sequence, thyroid-1, /DB_XREF=gi:4885172 /UG=Hs.315591 DNA segment, single copy, probe pH4 (transforming sequence, thyroid-1, /FL=gb:NM_005436.1 NM_005436 coiled-coil domain containing 6 CCDC6 8030 NM_005436 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation 3.25 121.05 0.16 0.88 0.90 -4.62
202213_s_at 202213_s_at AI650819 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI650819 /FEA=EST /DB_XREF=gi:4734798 /DB_XREF=est:wa95a10.x1 /CLONE=IMAGE:2303898 /UG=Hs.155976 cullin 4B /FL=gb:NM_003588.1 gb:AB014595.1 AI650819 cullin 4B CUL4B 8450 NM_001079872 /// NM_003588 /// XM_005262481 /// XM_006724784 /// XM_006724785 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // non-traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0035518 // histone H2A monoubiquitination // inferred from direct assay /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from direct assay /// 1900087 // positive regulation of G1/S transition of mitotic cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031465 // Cul4B-RING E3 ubiquitin ligase complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003684 // damaged DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation -3.65 238.12 -0.16 0.88 0.90 -4.62
212345_s_at 212345_s_at BE675139 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE675139 /FEA=EST /DB_XREF=gi:10035680 /DB_XREF=est:7f03b12.x1 /CLONE=IMAGE:3293567 /UG=Hs.13659 hypothetical protein DKFZp586F2423 BE675139 cAMP responsive element binding protein 3-like 2 CREB3L2 64764 NM_001253775 /// NM_194071 /// XM_005250541 0002062 // chondrocyte differentiation // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from expression pattern /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0051216 // cartilage development // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0035497 // cAMP response element binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // inferred from mutant phenotype -3.53 293.86 -0.16 0.88 0.90 -4.62
200973_s_at 200973_s_at NM_005724 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005724.1 /DEF=Homo sapiens tetraspan 3 (TSPAN-3), mRNA. /FEA=mRNA /GEN=TSPAN-3 /PROD=tetraspan 3 /DB_XREF=gi:5032200 /UG=Hs.100090 tetraspan 3 /FL=gb:BC000704.1 gb:BC004280.1 gb:AF054840.1 gb:NM_005724.1 gb:AF133423.1 NM_005724 tetraspanin 3 TSPAN3 10099 NM_001168412 /// NM_005724 /// NM_198902 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 5.73 341.16 0.16 0.88 0.90 -4.62
206792_x_at 206792_x_at NM_000923 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000923.1 /DEF=Homo sapiens phosphodiesterase 4C, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E1) (PDE4C), mRNA. /FEA=mRNA /GEN=PDE4C /PROD=phosphodiesterase 4C, cAMP-specific (dunce(Drosophila)-homolog phosphodiesterase E1) /DB_XREF=gi:4505664 /UG=Hs.189 phosphodiesterase 4C, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E1) /FL=gb:NM_000923.1 NM_000923 uncharacterized LOC729966 /// phosphodiesterase 4C, cAMP-specific LOC729966 /// PDE4C 5143 /// 729966 NM_000923 /// NM_001098818 /// NM_001098819 /// NR_036575 /// NR_040546 0006198 // cAMP catabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // non-traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005929 // cilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0072372 // primary cilium // inferred from sequence or structural similarity 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // non-traceable author statement /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // non-traceable author statement /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // traceable author statement /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -7.65 206.62 -0.15 0.88 0.91 -4.62
200863_s_at 200863_s_at AI215102 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI215102 /FEA=EST /DB_XREF=gi:3778703 /DB_XREF=est:qg69g05.x1 /CLONE=IMAGE:1840472 /UG=Hs.75618 RAB11A, member RAS oncogene family /FL=gb:AF000231.1 gb:NM_004663.1 AI215102 RAB11A, member RAS oncogene family RAB11A 8766 NM_001206836 /// NM_004663 0000910 // cytokinesis // inferred from mutant phenotype /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032402 // melanosome transport // inferred from sequence or structural similarity /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048227 // plasma membrane to endosome transport // non-traceable author statement /// 0051223 // regulation of protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0072659 // protein localization to plasma membrane // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045335 // phagocytic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from sequence or structural similarity /// 0055038 // recycling endosome membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019905 // syntaxin binding // non-traceable author statement 4.53 895.06 0.15 0.88 0.91 -4.62
201345_s_at 201345_s_at NM_003339 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003339.1 /DEF=Homo sapiens ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC45) (UBE2D2), mRNA. /FEA=mRNA /GEN=UBE2D2 /PROD=ubiquitin-conjugating enzyme E2D 2 (homologousto yeast UBC45) /DB_XREF=gi:4507774 /UG=Hs.108332 ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC45) /FL=gb:U39317.1 gb:NM_003339.1 NM_003339 ubiquitin-conjugating enzyme E2D 2 UBE2D2 7322 NM_003339 /// NM_181838 0000209 // protein polyubiquitination // inferred from direct assay /// 0002224 // toll-like receptor signaling pathway // traceable author statement /// 0002756 // MyD88-independent toll-like receptor signaling pathway // traceable author statement /// 0006464 // cellular protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from direct assay /// 0034138 // toll-like receptor 3 signaling pathway // traceable author statement /// 0034142 // toll-like receptor 4 signaling pathway // traceable author statement /// 0035666 // TRIF-dependent toll-like receptor signaling pathway // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0061418 // regulation of transcription from RNA polymerase II promoter in response to hypoxia // traceable author statement /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0071456 // cellular response to hypoxia // traceable author statement 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation -9.12 425.09 -0.15 0.88 0.91 -4.62
200771_at 200771_at NM_002293 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002293.2 /DEF=Homo sapiens laminin, gamma 1 (formerly LAMB2) (LAMC1), mRNA. /FEA=mRNA /GEN=LAMC1 /PROD=laminin, gamma 1 precursor /DB_XREF=gi:9845497 /UG=Hs.214982 laminin, gamma 1 (formerly LAMB2) /FL=gb:J03202.1 gb:NM_002293.2 NM_002293 laminin, gamma 1 (formerly LAMB2) LAMC1 3915 NM_002293 0006461 // protein complex assembly // inferred from direct assay /// 0007155 // cell adhesion // inferred from direct assay /// 0007411 // axon guidance // traceable author statement /// 0007492 // endoderm development // traceable author statement /// 0016477 // cell migration // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // inferred from mutant phenotype /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // inferred from mutant phenotype /// 0034446 // substrate adhesion-dependent cell spreading // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005605 // basal lamina // inferred from electronic annotation /// 0005606 // laminin-1 complex // non-traceable author statement /// 0005606 // laminin-1 complex // traceable author statement /// 0005615 // extracellular space // non-traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0043259 // laminin-10 complex // traceable author statement /// 0043260 // laminin-11 complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0043208 // glycosphingolipid binding // inferred from electronic annotation -3.55 892.67 -0.15 0.89 0.91 -4.62
210154_at 210154_at M55905 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:M55905.1 /DEF=Human mitochondrial NAD(P)+ dependent malic enzyme mRNA, complete cds. /FEA=mRNA /GEN=NAD(P)+ -dependent malic enzyme /PROD=mitochondrial NAD(P)+ -dependent malic enzyme /DB_XREF=gi:187299 /UG=Hs.75342 malic enzyme 2, NAD(+)-dependent, mitochondrial /FL=gb:NM_002396.2 gb:M55905.1 M55905 malic enzyme 2, NAD(+)-dependent, mitochondrial ME2 4200 NM_001168335 /// NM_002396 0006108 // malate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred from electronic annotation /// 0004471 // malate dehydrogenase (decarboxylating) (NAD+) activity // inferred from electronic annotation /// 0008948 // oxaloacetate decarboxylase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation 3.40 131.30 0.15 0.89 0.91 -4.62
211454_x_at 211454_x_at AF336878 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF336878.1 /DEF=Homo sapiens FKSG51 (FKSG51) mRNA, complete cds. /FEA=mRNA /GEN=FKSG51 /PROD=FKSG51 /DB_XREF=gi:13384184 /UG=Hs.326752 Homo sapiens FKSG51 (FKSG51) mRNA, complete cds /FL=gb:AF336878.1 AF336878 FKSG49 FKSG49 400949 XR_041698 -5.80 173.28 -0.15 0.89 0.91 -4.62
212845_at 212845_at AB028976 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AB028976.1 /DEF=Homo sapiens mRNA for KIAA1053 protein, partial cds. /FEA=mRNA /GEN=KIAA1053 /PROD=KIAA1053 protein /DB_XREF=gi:5689442 /UG=Hs.173571 KIAA1053 protein AB028976 sterile alpha motif domain containing 4A SAMD4A 23034 NM_001161576 /// NM_001161577 /// NM_015589 0006417 // regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0030371 // translation repressor activity // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay 7.48 323.39 0.14 0.89 0.91 -4.62
200661_at 200661_at NM_000308 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000308.1 /DEF=Homo sapiens protective protein for beta-galactosidase (galactosialidosis) (PPGB), mRNA. /FEA=mRNA /GEN=PPGB /PROD=protective protein for beta-galactosidase /DB_XREF=gi:4505988 /UG=Hs.118126 protective protein for beta-galactosidase (galactosialidosis) /FL=gb:BC000597.1 gb:M22960.1 gb:NM_000308.1 NM_000308 cathepsin A CTSA 5476 NM_000308 /// NM_001127695 /// NM_001167594 0006508 // proteolysis // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // traceable author statement /// 0006687 // glycosphingolipid metabolic process // traceable author statement /// 0006886 // intracellular protein transport // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0035556 // intracellular signal transduction // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0045214 // sarcomere organization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // non-traceable author statement /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005927 // muscle tendon junction // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030891 // VCB complex // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004180 // carboxypeptidase activity // traceable author statement /// 0004185 // serine-type carboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 4.70 292.57 0.14 0.89 0.91 -4.62
38487_at 38487_at D87433 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Cluster Incl. D87433:Human mRNA for KIAA0246 gene, partial cds /cds=(0,6639) /gb=D87433 /gi=1665760 /ug=Hs.84753 /len=6777 D87433 stabilin 1 STAB1 23166 NM_015136 /// XM_005264973 /// XM_005264974 /// XM_005264975 /// XM_006713065 /// XM_006713066 /// XR_427261 0006898 // receptor-mediated endocytosis // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007267 // cell-cell signaling // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from mutant phenotype /// 0042742 // defense response to bacterium // inferred from direct assay /// 0055114 // oxidation-reduction process // non-traceable author statement 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement 0005041 // low-density lipoprotein receptor activity // inferred from direct assay /// 0005044 // scavenger receptor activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // non-traceable author statement /// 0030169 // low-density lipoprotein particle binding // inferred from direct assay 6.85 509.72 0.14 0.89 0.91 -4.62
202226_s_at 202226_s_at NM_016823 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016823.1 /DEF=Homo sapiens v-crk avian sarcoma virus CT10 oncogene homolog (CRK), transcript variant II, mRNA. /FEA=mRNA /GEN=CRK /PROD=v-crk avian sarcoma virus CT10 oncogene homologisoform a /DB_XREF=gi:8400705 /UG=Hs.306088 v-crk avian sarcoma virus CT10 oncogene homolog /FL=gb:D10656.1 gb:NM_016823.1 NM_016823 v-crk avian sarcoma virus CT10 oncogene homolog CRK 1398 NM_005206 /// NM_016823 0000186 // activation of MAPKK activity // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0032319 // regulation of Rho GTPase activity // inferred from direct assay /// 0032956 // regulation of actin cytoskeleton organization // inferred from direct assay /// 0035020 // regulation of Rac protein signal transduction // inferred from electronic annotation /// 0038096 // Fc-gamma receptor signaling pathway involved in phagocytosis // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0048013 // ephrin receptor signaling pathway // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // inferred by curator /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from physical interaction /// 0045309 // protein phosphorylated amino acid binding // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from physical interaction -3.78 199.56 -0.14 0.89 0.91 -4.62
201594_s_at 201594_s_at NM_005134 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005134.1 /DEF=Homo sapiens protein phosphatase 4, regulatory subunit 1 (PPP4R1), mRNA. /FEA=mRNA /GEN=PPP4R1 /PROD=protein phosphatase 4, regulatory subunit 1 /DB_XREF=gi:4826933 /UG=Hs.3382 protein phosphatase 4, regulatory subunit 1 /FL=gb:AF111106.1 gb:NM_005134.1 gb:AF100744.1 NM_005134 protein phosphatase 4, regulatory subunit 1 PPP4R1 9989 NM_001042388 /// NM_005134 /// NR_052003 /// XR_430048 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0007165 // signal transduction // non-traceable author statement /// 0016311 // dephosphorylation // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // non-traceable author statement 0030289 // protein phosphatase 4 complex // inferred from sequence or structural similarity 0004721 // phosphoprotein phosphatase activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030362 // protein phosphatase type 4 regulator activity // non-traceable author statement 4.02 501.54 0.14 0.89 0.91 -4.62
218297_at 218297_at NM_024948 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_024948.1 /DEF=Homo sapiens hypothetical protein FLJ13397 (FLJ13397), mRNA. /FEA=mRNA /GEN=FLJ13397 /PROD=hypothetical protein FLJ13397 /DB_XREF=gi:13376430 /UG=Hs.285107 hypothetical protein FLJ13397 /FL=gb:AF063600.1 gb:NM_024948.1 NM_024948 family with sequence similarity 188, member A FAM188A 80013 NM_024948 /// XM_005252598 /// XM_005252600 /// XM_005252601 /// XM_005252602 /// XM_006717508 /// XR_428647 0006915 // apoptotic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction -4.65 115.20 -0.14 0.89 0.92 -4.62
203396_at 203396_at NM_002789 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002789.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 4 (PSMA4), mRNA. /FEA=mRNA /GEN=PSMA4 /PROD=proteasome (prosome, macropain) subunit, alphatype, 4 /DB_XREF=gi:4506184 /UG=Hs.251531 proteasome (prosome, macropain) subunit, alpha type, 4 /FL=gb:BC005361.1 gb:NM_002789.1 NM_002789 proteasome (prosome, macropain) subunit, alpha type, 4 PSMA4 5685 NM_001102667 /// NM_001102668 /// NM_002789 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 5.60 623.08 0.14 0.90 0.92 -4.62
214080_x_at 214080_x_at AI815793 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI815793 /FEA=EST /DB_XREF=gi:5431339 /DB_XREF=est:au42d05.x1 /CLONE=IMAGE:2517417 /UG=Hs.1432 protein kinase C substrate 80K-H AI815793 protein kinase C substrate 80K-H PRKCSH 5589 NM_001001329 /// NM_001289102 /// NM_001289103 /// NM_001289104 /// NM_002743 /// XM_006722795 /// XM_006722796 /// XM_006722797 /// XM_006722798 /// XR_430144 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001889 // liver development // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0006491 // N-glycan processing // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // traceable author statement /// 0035556 // intracellular signal transduction // non-traceable author statement /// 0043687 // post-translational protein modification // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045087 // innate immune response // traceable author statement /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0072001 // renal system development // inferred from electronic annotation 0005622 // intracellular // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // traceable author statement 0003723 // RNA binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0044325 // ion channel binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from physical interaction -4.00 389.02 -0.14 0.90 0.92 -4.62
200638_s_at 200638_s_at BC003623 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC003623.1 /DEF=Homo sapiens, tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide, clone MGC:2153, mRNA, complete cds. /FEA=mRNA /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, zeta polypeptide /DB_XREF=gi:13177678 /UG=Hs.75103 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide /FL=gb:BC003623.1 gb:M86400.1 gb:NM_003406.1 gb:U28964.1 BC003623 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta YWHAZ 7534 NM_001135699 /// NM_001135700 /// NM_001135701 /// NM_001135702 /// NM_003406 /// NM_145690 /// XM_005251060 /// XM_005251061 /// XM_005251062 /// XM_005251063 0002553 // histamine secretion by mast cell // inferred from electronic annotation /// 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0010941 // regulation of cell death // inferred from electronic annotation /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0055114 // oxidation-reduction process // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0072562 // blood microparticle // inferred from direct assay 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 9.07 1053.91 0.14 0.90 0.92 -4.62
210186_s_at 210186_s_at BC005147 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC005147.1 /DEF=Homo sapiens, FK506-binding protein 1A (12kD), clone MGC:2167, mRNA, complete cds. /FEA=mRNA /PROD=FK506-binding protein 1A (12kD) /DB_XREF=gi:13477342 /UG=Hs.752 FK506-binding protein 1A (12kD) /FL=gb:BC005147.1 BC005147 FK506 binding protein 1A, 12kDa /// uncharacterized LOC101929368 FKBP1A /// LOC101929368 2280 /// 101929368 NM_000801 /// NM_001199786 /// NM_054014 /// XR_245428 /// XR_247917 /// XR_253167 0000413 // protein peptidyl-prolyl isomerization // inferred from direct assay /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0006457 // protein folding // non-traceable author statement /// 0006458 // 'de novo' protein folding // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007183 // SMAD protein complex assembly // inferred from direct assay /// 0018208 // peptidyl-proline modification // /// 0022417 // protein maturation by protein folding // traceable author statement /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0032513 // negative regulation of protein phosphatase type 2B activity // inferred from direct assay /// 0032880 // regulation of protein localization // inferred from genetic interaction /// 0032925 // regulation of activin receptor signaling pathway // inferred from direct assay /// 0034205 // beta-amyloid formation // inferred from direct assay /// 0042026 // protein refolding // traceable author statement /// 0042110 // T cell activation // non-traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from mutant phenotype /// 0043206 // extracellular fibril organization // inferred from direct assay /// 0050776 // regulation of immune response // inferred from mutant phenotype /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from sequence or structural similarity /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // inferred from sequence or structural similarity /// 0060315 // negative regulation of ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0060347 // heart trabecula formation // inferred from sequence or structural similarity /// 0061077 // chaperone-mediated protein folding // not recorded /// 0070588 // calcium ion transmembrane transport // non-traceable author statement /// 1902991 // regulation of amyloid precursor protein catabolic process // inferred from genetic interaction /// 1990000 // amyloid fibril formation // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0014802 // terminal cisterna // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030424 // axon // /// 0033017 // sarcoplasmic reticulum membrane // /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from mutant phenotype /// 0005024 // transforming growth factor beta-activated receptor activity // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005219 // ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005527 // macrolide binding // non-traceable author statement /// 0005528 // FK506 binding // inferred from direct assay /// 0005528 // FK506 binding // non-traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // inferred from direct assay /// 0034713 // type I transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0044325 // ion channel binding // inferred from sequence or structural similarity /// 0046332 // SMAD binding // inferred from physical interaction /// 0048185 // activin binding // inferred from physical interaction 11.13 837.89 0.13 0.90 0.92 -4.62
212552_at 212552_at BE617588 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BE617588 /FEA=EST /DB_XREF=gi:9888526 /DB_XREF=est:601441509T1 /CLONE=IMAGE:3845643 /UG=Hs.3618 hippocalcin-like 1 BE617588 hippocalcin-like 1 HPCAL1 3241 NM_001258357 /// NM_001258358 /// NM_001258359 /// NM_002149 /// NM_134421 /// XM_005246160 /// XM_005246161 /// XM_005246162 /// XM_005246163 /// XM_006711885 /// XR_426955 0007165 // signal transduction // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -4.63 344.04 -0.13 0.90 0.92 -4.62
202840_at 202840_at NM_003487 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_003487.1 /DEF=Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase II, N, 68kD (RNA-binding protein 56) (TAF2N), mRNA. /FEA=mRNA /GEN=TAF2N /PROD=TATA box binding protein (TBP)-associatedfactor, RNA polymerase II, N, 68kD (RNA-binding protein56) /DB_XREF=gi:4507352 /UG=Hs.66772 TATA box binding protein (TBP)-associated factor, RNA polymerase II, N, 68kD (RNA-binding protein 56) /FL=gb:U51334.1 gb:NM_003487.1 NM_003487 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa TAF15 8148 NM_003487 /// NM_139215 0045893 // positive regulation of transcription, DNA-templated // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation -3.28 60.04 -0.13 0.90 0.92 -4.62
200096_s_at 200096_s_at AI862255 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI862255 /FEA=EST /DB_XREF=gi:5526362 /DB_XREF=est:tb77d10.x1 /CLONE=IMAGE:2060371 /UG=Hs.24322 ATPase, H+ transporting, lysosomal (vacuolar proton pump) 9kD AI862255 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 ATP6V0E1 8992 NM_003945 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0007035 // vacuolar acidification // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // traceable author statement /// 0016049 // cell growth // inferred from genetic interaction /// 0033572 // transferrin transport // traceable author statement /// 0043200 // response to amino acid // inferred from electronic annotation /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0010008 // endosome membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // traceable author statement /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042625 // ATPase activity, coupled to transmembrane movement of ions // inferred from sequence or structural similarity /// 0046961 // proton-transporting ATPase activity, rotational mechanism // traceable author statement 6.15 758.67 0.13 0.90 0.92 -4.62
219966_x_at 219966_x_at NM_017869 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_017869.1 /DEF=Homo sapiens BANP homolog, SMAR1 homolog (FLJ20538), mRNA. /FEA=mRNA /GEN=FLJ20538 /PROD=BANP homolog, SMAR1 homolog /DB_XREF=gi:8923506 /UG=Hs.194637 BANP homolog, SMAR1 homolog /FL=gb:NM_017869.1 NM_017869 BTG3 associated nuclear protein BANP 54971 NM_001173539 /// NM_001173540 /// NM_001173541 /// NM_001173542 /// NM_001173543 /// NM_017869 /// NM_079837 /// XM_005256008 /// XM_005256009 /// XM_005256010 /// XM_005256012 /// XM_006721213 /// XM_006721214 /// XM_006721215 /// XM_006721216 /// XM_006721217 /// XM_006721218 /// XM_006721219 /// XM_006721220 /// XM_006721221 /// XM_006721222 /// XM_006721223 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034504 // protein localization to nucleus // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0002039 // p53 binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 3.05 143.12 0.13 0.90 0.92 -4.62
209253_at 209253_at AF037261 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF037261.1 /DEF=Homo sapiens SH3-containing adaptor molecule-1 mRNA, complete cds. /FEA=mRNA /PROD=SH3-containing adaptor molecule-1 /DB_XREF=gi:3004947 /UG=Hs.33787 vinexin beta (SH3-containing adaptor molecule-1) /FL=gb:AF037261.1 AF037261 sorbin and SH3 domain containing 3 SORBS3 10174 NM_001018003 /// NM_005775 /// XM_005273370 /// XM_005273371 /// XM_006716266 /// XM_006716267 /// XM_006716268 /// XM_006716269 /// XM_006716270 /// XM_006716271 /// XR_428299 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// 0051495 // positive regulation of cytoskeleton organization // non-traceable author statement /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0017166 // vinculin binding // inferred from physical interaction -3.70 84.15 -0.13 0.90 0.92 -4.62
211043_s_at 211043_s_at BC006332 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC006332.1 /DEF=Homo sapiens, clathrin, light polypeptide (Lcb), clone MGC:12930, mRNA, complete cds. /FEA=mRNA /PROD=clathrin, light polypeptide (Lcb) /DB_XREF=gi:13623458 /FL=gb:BC006332.1 BC006332 clathrin, light chain B CLTB 1212 NM_001834 /// NM_007097 /// NR_045724 /// XM_006714818 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from sequence or structural similarity /// 0030118 // clathrin coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0060170 // ciliary membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from electronic annotation 3.80 228.07 0.13 0.90 0.92 -4.62
213875_x_at 213875_x_at BG252842 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BG252842 /FEA=EST /DB_XREF=gi:12762658 /DB_XREF=est:602365421F1 /CLONE=IMAGE:4473701 /UG=Hs.173685 hypothetical protein FLJ12619 BG252842 chromosome 6 open reading frame 62 C6orf62 81688 NM_030939 /// XM_005249433 0005622 // intracellular // inferred from direct assay -3.97 181.24 -0.13 0.90 0.92 -4.62
221495_s_at 221495_s_at AF322111 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF322111.1 /DEF=Homo sapiens FKSG26 mRNA, complete cds. /FEA=mRNA /PROD=FKSG26 /DB_XREF=gi:12276139 /UG=Hs.227835 KIAA1049 protein /FL=gb:AF322111.1 gb:BC000959.1 AF322111 transcription factor 25 (basic helix-loop-helix) TCF25 22980 NM_014972 /// XM_005256297 /// XM_005256298 /// XM_005256299 /// XM_005256300 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007507 // heart development // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction -4.10 372.10 -0.12 0.90 0.92 -4.62
206247_at 206247_at NM_005931 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005931.1 /DEF=Homo sapiens MHC class I polypeptide-related sequence B (MICB), mRNA. /FEA=mRNA /GEN=MICB /PROD=MHC class I polypeptide-related sequence B /DB_XREF=gi:5174564 /UG=Hs.211580 MHC class I polypeptide-related sequence B /FL=gb:NM_005931.1 NM_005931 MHC class I polypeptide-related sequence B MICB 4277 NM_001289160 /// NM_001289161 /// NM_005931 /// XM_006726002 /// XM_006726095 0001913 // T cell mediated cytotoxicity // not recorded /// 0002376 // immune system process // inferred from electronic annotation /// 0002429 // immune response-activating cell surface receptor signaling pathway // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0009408 // response to heat // inferred from direct assay /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0019835 // cytolysis // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0032526 // response to retinoic acid // inferred from direct assay /// 0042267 // natural killer cell mediated cytotoxicity // not recorded /// 0046629 // gamma-delta T cell activation // inferred from direct assay /// 0050689 // negative regulation of defense response to virus by host // inferred from direct assay /// 0050776 // regulation of immune response // traceable author statement 0005886 // plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0003823 // antigen binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030881 // beta-2-microglobulin binding // not recorded /// 0046703 // natural killer cell lectin-like receptor binding // inferred from direct assay -3.95 157.68 -0.12 0.91 0.93 -4.62
214709_s_at 214709_s_at Z22551 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:Z22551.1 /DEF=H.sapiens kinectin gene. /FEA=mRNA /GEN=kinectin /PROD=156 kDa Protein /DB_XREF=gi:296163 /UG=Hs.211577 kinectin 1 (kinesin receptor) Z22551 kinectin 1 (kinesin receptor) KTN1 3895 NM_001079521 /// NM_001079522 /// NM_001271014 /// NM_004986 /// NM_182926 /// NR_073128 /// NR_073129 /// XM_006720138 /// XM_006720139 /// XM_006720140 /// XM_006720141 0007018 // microtubule-based movement // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016021 // integral component of membrane // traceable author statement /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from electronic annotation 0019894 // kinesin binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay 5.50 490.93 0.12 0.91 0.93 -4.62
200637_s_at 200637_s_at AI762627 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI762627 /FEA=EST /DB_XREF=gi:5178294 /DB_XREF=est:wi56g01.x1 /CLONE=IMAGE:2394288 /UG=Hs.75216 protein tyrosine phosphatase, receptor type, F /FL=gb:NM_002840.1 AI762627 protein tyrosine phosphatase, receptor type, F PTPRF 5792 NM_002840 /// NM_130440 /// XM_005271079 /// XM_005271080 /// XM_005271081 /// XM_005271082 /// XM_006710795 /// XM_006710796 /// XM_006710797 /// XM_006710798 /// XM_006710799 /// XM_006710800 /// XM_006710801 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from mutant phenotype /// 1900121 // negative regulation of receptor binding // inferred from mutant phenotype 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 4.05 207.53 0.12 0.91 0.93 -4.62
211858_x_at 211858_x_at AF088184 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF088184.1 /DEF=Homo sapiens guanine nucleotide-binding protein Gs alpha subunit isoform L2 mRNA, complete cds. /FEA=CDS /PROD=guanine nucleotide-binding protein Gs alphasubunit isoform L2 /DB_XREF=gi:3552031 /UG=Hs.273385 guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 /FL=gb:AF088184.1 AF088184 GNAS complex locus GNAS 2778 NM_000516 /// NM_001077488 /// NM_001077489 /// NM_001077490 /// NM_016592 /// NM_080425 /// NM_080426 /// NR_003259 /// XM_005260401 /// XM_005260402 /// XM_006723781 /// XM_006723782 0001501 // skeletal system development // inferred from electronic annotation /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // traceable author statement /// 0006171 // cAMP biosynthetic process // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006833 // water transport // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from direct assay /// 0007189 // adenylate cyclase-activating G-protein coupled receptor signaling pathway // inferred from mutant phenotype /// 0007190 // activation of adenylate cyclase activity // traceable author statement /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // not recorded /// 0007191 // adenylate cyclase-activating dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0007565 // female pregnancy // non-traceable author statement /// 0007596 // blood coagulation // traceable author statement /// 0007606 // sensory perception of chemical stimulus // not recorded /// 0007608 // sensory perception of smell // traceable author statement /// 0009306 // protein secretion // non-traceable author statement /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040032 // post-embryonic body morphogenesis // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0043588 // skin development // inferred from electronic annotation /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from direct assay /// 0044281 // small molecule metabolic process // traceable author statement /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0046907 // intracellular transport // non-traceable author statement /// 0048589 // developmental growth // inferred from direct assay /// 0048589 // developmental growth // inferred from mutant phenotype /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050890 // cognition // inferred from direct assay /// 0050890 // cognition // inferred from mutant phenotype /// 0051216 // cartilage development // inferred from electronic annotation /// 0055085 // transmembrane transport // traceable author statement /// 0060348 // bone development // inferred from direct assay /// 0060348 // bone development // inferred from mutant phenotype /// 0060789 // hair follicle placode formation // inferred from direct assay /// 0060789 // hair follicle placode formation // inferred from mutant phenotype /// 0070527 // platelet aggregation // inferred from direct assay /// 0070527 // platelet aggregation // inferred from mutant phenotype /// 0071107 // response to parathyroid hormone // inferred from mutant phenotype /// 0071377 // cellular response to glucagon stimulus // traceable author statement /// 0071380 // cellular response to prostaglandin E stimulus // inferred from sequence or structural similarity /// 0071514 // genetic imprinting // inferred from electronic annotation /// 0071870 // cellular response to catecholamine stimulus // inferred from sequence or structural similarity /// 0071880 // adenylate cyclase-activating adrenergic receptor signaling pathway // inferred from direct assay 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural similarity /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031224 // intrinsic component of membrane // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0004016 // adenylate cyclase activity // traceable author statement /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from direct assay /// 0005159 // insulin-like growth factor receptor binding // /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit complex binding // not recorded /// 0031683 // G-protein beta/gamma-subunit complex binding // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // /// 0031748 // D1 dopamine receptor binding // /// 0031852 // mu-type opioid receptor binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051430 // corticotropin-releasing hormone receptor 1 binding // -39.35 1650.35 -0.12 0.91 0.93 -4.62
208120_x_at 208120_x_at NM_031221 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_031221.1 /DEF=Homo sapiens hypothetical protein FKSG63 (FKSG63), mRNA. /FEA=mRNA /GEN=FKSG63 /PROD=hypothetical protein FKSG63 /DB_XREF=gi:13654297 /FL=gb:NM_031221.1 NM_031221 FKSG49 FKSG49 400949 XR_041698 -4.77 213.11 -0.12 0.91 0.93 -4.62
207668_x_at 207668_x_at NM_005742 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005742.1 /DEF=Homo sapiens protein disulfide isomerase-related protein (P5), mRNA. /FEA=mRNA /GEN=P5 /PROD=protein disulfide isomerase-related protein /DB_XREF=gi:5031972 /UG=Hs.182429 protein disulfide isomerase-related protein /FL=gb:D49489.1 gb:NM_005742.1 NM_005742 protein disulfide isomerase family A, member 6 PDIA6 10130 NM_001282704 /// NM_001282705 /// NM_001282706 /// NM_001282707 /// NM_005742 /// XM_005246145 /// XM_006711856 0006457 // protein folding // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0033572 // transferrin transport // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from direct assay -28.00 1516.72 -0.12 0.91 0.93 -4.62
207168_s_at 207168_s_at NM_004893 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004893.1 /DEF=Homo sapiens H2A histone family, member Y (H2AFY), mRNA. /FEA=mRNA /GEN=H2AFY /PROD=H2A histone family, member Y /DB_XREF=gi:4758495 /UG=Hs.75258 H2A histone family, member Y /FL=gb:AF054174.1 gb:NM_004893.1 NM_004893 H2A histone family, member Y H2AFY 9555 NM_001040158 /// NM_004893 /// NM_138609 /// NM_138610 /// XM_005272132 /// XM_005272134 /// XM_005272135 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001558 // regulation of cell growth // inferred from genetic interaction /// 0006334 // nucleosome assembly // non-traceable author statement /// 0007549 // dosage compensation // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0033128 // negative regulation of histone phosphorylation // inferred from mutant phenotype /// 0045814 // negative regulation of gene expression, epigenetic // inferred from mutant phenotype /// 0061187 // regulation of chromatin silencing at rDNA // inferred from mutant phenotype /// 0071169 // establishment of protein localization to chromatin // inferred from mutant phenotype /// 0071901 // negative regulation of protein serine/threonine kinase activity // inferred from mutant phenotype /// 1901837 // negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter // inferred from genetic interaction /// 1901837 // negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter // inferred from mutant phenotype /// 1902750 // negative regulation of cell cycle G2/M phase transition // inferred from mutant phenotype 0000786 // nucleosome // non-traceable author statement /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0001739 // sex chromatin // traceable author statement /// 0001740 // Barr body // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0035098 // ESC/E(Z) complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000182 // rDNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0010385 // double-stranded methylated DNA binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030291 // protein serine/threonine kinase inhibitor activity // inferred from mutant phenotype /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 3.98 517.66 0.12 0.91 0.93 -4.62
210686_x_at 210686_x_at BC001407 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001407.1 /DEF=Homo sapiens, Similar to cytochrome c-like antigen, clone MGC:2960, mRNA, complete cds. /FEA=mRNA /PROD=Similar to cytochrome c-like antigen /DB_XREF=gi:12655110 /UG=Hs.253070 Homo sapiens, Similar to cytochrome c-like antigen, clone MGC:2960, mRNA, complete cds /FL=gb:BC001407.1 BC001407 solute carrier family 25 (mitochondrial carrier), member 16 SLC25A16 8034 NM_152707 /// XM_005270183 /// XM_006717987 0006766 // vitamin metabolic process // traceable author statement /// 0006767 // water-soluble vitamin metabolic process // traceable author statement /// 0006810 // transport // non-traceable author statement /// 0009108 // coenzyme biosynthetic process // traceable author statement /// 0015939 // pantothenate metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0015297 // antiporter activity // non-traceable author statement -4.20 193.97 -0.11 0.91 0.93 -4.62
200601_at 200601_at U48734 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:U48734.1 /DEF=Human non-muscle alpha-actinin mRNA, complete cds. /FEA=mRNA /PROD=alpha actinin /DB_XREF=gi:3157975 /UG=Hs.182485 actinin, alpha 4 /FL=gb:NM_004924.2 gb:BC005033.1 gb:D89980.1 gb:U48734.1 U48734 actinin, alpha 4 ACTN4 81 NM_004924 /// XM_005259281 /// XM_005259282 /// XM_006723406 0001666 // response to hypoxia // inferred from electronic annotation /// 0002576 // platelet degranulation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007596 // blood coagulation // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0032417 // positive regulation of sodium:proton antiporter activity // non-traceable author statement /// 0042981 // regulation of apoptotic process // non-traceable author statement /// 0048549 // positive regulation of pinocytosis // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051271 // negative regulation of cellular component movement // inferred from electronic annotation /// 0051272 // positive regulation of cellular component movement // inferred from direct assay /// 0051272 // positive regulation of cellular component movement // inferred from mutant phenotype /// 0051764 // actin crosslink formation // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from electronic annotation 0001725 // stress fiber // inferred from electronic annotation /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // traceable author statement /// 0031143 // pseudopodium // traceable author statement /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0001882 // nucleoside binding // inferred from direct assay /// 0003779 // actin binding // traceable author statement /// 0005178 // integrin binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay 11.25 540.45 0.11 0.91 0.93 -4.62
201876_at 201876_at NM_000305 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_000305.1 /DEF=Homo sapiens paraoxonase 2 (PON2), mRNA. /FEA=mRNA /GEN=PON2 /PROD=paraoxonase 2 /DB_XREF=gi:4505952 /UG=Hs.169857 paraoxonase 2 /FL=gb:L48513.1 gb:AF001601.1 gb:NM_000305.1 NM_000305 paraoxonase 2 PON2 5445 NM_000305 /// NM_001018161 /// XM_005250453 /// XM_005250454 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019439 // aromatic compound catabolic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004064 // arylesterase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation -4.25 521.20 -0.11 0.91 0.93 -4.62
212595_s_at 212595_s_at AL534321 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL534321 /FEA=EST /DB_XREF=gi:12797814 /DB_XREF=est:AL534321 /CLONE=CS0DF004YB03 (5 prime) /UG=Hs.75416 DAZ associated protein 2 AL534321 DAZ associated protein 2 DAZAP2 9802 NM_001136264 /// NM_001136266 /// NM_001136267 /// NM_001136268 /// NM_001136269 /// NM_014764 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0050699 // WW domain binding // inferred from physical interaction 6.27 437.59 0.11 0.92 0.93 -4.62
200613_at 200613_at NM_004068 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_004068.1 /DEF=Homo sapiens adaptor-related protein complex 2, mu 1 subunit (AP2M1), mRNA. /FEA=mRNA /GEN=AP2M1 /PROD=adaptor-related protein complex 2, mu 1 subunit /DB_XREF=gi:4757993 /UG=Hs.152936 adaptor-related protein complex 2, mu 1 subunit /FL=gb:U36188.1 gb:BC004996.1 gb:D63475.1 gb:NM_004068.1 NM_004068 adaptor-related protein complex 2, mu 1 subunit AP2M1 1173 NM_001025205 /// NM_004068 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016032 // viral process // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // traceable author statement /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // traceable author statement /// 0048011 // neurotrophin TRK receptor signaling pathway // traceable author statement /// 0050690 // regulation of defense response to virus by virus // traceable author statement /// 0061024 // membrane organization // traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005765 // lysosomal membrane // traceable author statement /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // traceable author statement /// 0030669 // clathrin-coated endocytic vesicle membrane // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005215 // transporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation 5.75 629.70 0.11 0.92 0.93 -4.62
200680_x_at 200680_x_at NM_002128 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002128.1 /DEF=Homo sapiens high-mobility group (nonhistone chromosomal) protein 1 (HMG1), mRNA. /FEA=mRNA /GEN=HMG1 /PROD=high-mobility group (nonhistone chromosomal)protein 1 /DB_XREF=gi:4504424 /UG=Hs.274472 high-mobility group (nonhistone chromosomal) protein 1 /FL=gb:BC003378.1 gb:NM_002128.1 gb:D63874.1 NM_002128 high mobility group box 1 HMGB1 3146 NM_002128 /// XM_005266363 /// XM_005266365 /// XM_005266368 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001773 // myeloid dendritic cell activation // inferred from sequence or structural similarity /// 0002407 // dendritic cell chemotaxis // inferred from sequence or structural similarity /// 0002437 // inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006265 // DNA topological change // inferred from sequence or structural similarity /// 0006288 // base-excision repair, DNA ligation // inferred from direct assay /// 0006309 // apoptotic DNA fragmentation // traceable author statement /// 0006310 // DNA recombination // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006915 // apoptotic process // traceable author statement /// 0006921 // cellular component disassembly involved in execution phase of apoptosis // traceable author statement /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from direct assay /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0033151 // V(D)J recombination // inferred from direct assay /// 0043065 // positive regulation of apoptotic process // inferred from direct assay /// 0043280 // positive regulation of cysteine-type endopeptidase activity involved in apoptotic process // inferred from direct assay /// 0043388 // positive regulation of DNA binding // inferred from direct assay /// 0045087 // innate immune response // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from sequence or structural similarity /// 0051103 // DNA ligation involved in DNA repair // inferred from sequence or structural similarity /// 2000426 // negative regulation of apoptotic cell clearance // inferred from electronic annotation 0000793 // condensed chromosome // inferred from direct assay /// 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005694 // chromosome // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0017053 // transcriptional repressor complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from sequence or structural similarity /// 0003690 // double-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008301 // DNA binding, bending // inferred from mutant phenotype /// 0008301 // DNA binding, bending // inferred from sequence or structural similarity /// 0042056 // chemoattractant activity // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay /// 0050786 // RAGE receptor binding // inferred from sequence or structural similarity /// 0070491 // repressing transcription factor binding // inferred from physical interaction -25.87 2369.26 -0.11 0.92 0.93 -4.62
201973_s_at 201973_s_at AL550875 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL550875 /FEA=EST /DB_XREF=gi:12888273 /DB_XREF=est:AL550875 /CLONE=CS0DI065YO01 (5 prime) /UG=Hs.289112 CGI-43 protein /FL=gb:NM_015622.1 gb:AF151801.1 AL550875 CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae) /// CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) CCZ1 /// CCZ1B 51622 /// 221960 NM_015622 /// NM_198097 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 3.50 568.98 0.10 0.92 0.94 -4.62
216483_s_at 216483_s_at AC005339 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AC005339 /DEF=Homo sapiens chromosome 19, cosmid R33729 /FEA=CDS /DB_XREF=gi:3355454 /UG=Hs.296443 hypothetical protein R33729_1 AC005339 chromosome 19 open reading frame 10 C19orf10 56005 NM_019107 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay -3.78 378.79 -0.10 0.92 0.94 -4.62
209330_s_at 209330_s_at D55674 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D55674.1 /DEF=Human mRNA for heterogeneous nuclear ribonucleoprotein D (hnRNP D), complete cds, clone cDx9. /FEA=mRNA /PROD=heterogeneous nuclear ribonucleoprotein D (hnRNPD) /DB_XREF=gi:870748 /UG=Hs.303627 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD) /FL=gb:BC002401.1 gb:D55674.1 D55674 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) HNRNPD 3184 NM_001003810 /// NM_002138 /// NM_031369 /// NM_031370 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // non-traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006401 // RNA catabolic process // traceable author statement /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from mutant phenotype /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // non-traceable author statement /// 0048511 // rhythmic process // inferred from electronic annotation /// 0097167 // circadian regulation of translation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0042162 // telomeric DNA binding // inferred from direct assay /// 0044822 // poly(A) RNA binding // inferred from direct assay -3.03 481.71 -0.10 0.92 0.94 -4.62
211074_at 211074_at AF000381 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:AF000381.1 /DEF=Homo sapiens non-functional folate binding protein mRNA, complete cds. /FEA=mRNA /PROD=non-functional folate binding protein /DB_XREF=gi:2565195 /FL=gb:AF000381.1 AF000381 6.73 512.46 0.10 0.93 0.94 -4.62
208639_x_at 208639_x_at BC001312 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:BC001312.1 /DEF=Homo sapiens, protein disulfide isomerase-related protein, clone MGC:5517, mRNA, complete cds. /FEA=mRNA /PROD=protein disulfide isomerase-related protein /DB_XREF=gi:12654930 /UG=Hs.182429 protein disulfide isomerase-related protein /FL=gb:BC001312.1 BC001312 protein disulfide isomerase family A, member 6 PDIA6 10130 NM_001282704 /// NM_001282705 /// NM_001282706 /// NM_001282707 /// NM_005742 /// XM_005246145 /// XM_006711856 0006457 // protein folding // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006987 // activation of signaling protein activity involved in unfolded protein response // traceable author statement /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0030177 // positive regulation of Wnt signaling pathway // inferred from mutant phenotype /// 0030968 // endoplasmic reticulum unfolded protein response // traceable author statement /// 0033572 // transferrin transport // traceable author statement /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0051701 // interaction with host // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 0090382 // phagosome maturation // traceable author statement 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005793 // endoplasmic reticulum-Golgi intermediate compartment // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0003756 // protein disulfide isomerase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from direct assay 15.95 1255.70 0.09 0.93 0.94 -4.62
210231_x_at 210231_x_at D45198 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:D45198.1 /DEF=Human mRNA for template acyivating factor-I alpha, complete cds. /FEA=mRNA /GEN=set /PROD=template acyivating factor-I alpha /DB_XREF=gi:971271 /UG=Hs.145279 SET translocation (myeloid leukemia-associated) /FL=gb:D45198.1 D45198 SET nuclear proto-oncogene SET 6418 NM_001122821 /// NM_001248000 /// NM_001248001 /// NM_003011 0000278 // mitotic cell cycle // traceable author statement /// 0006260 // DNA replication // traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006337 // nucleosome disassembly // traceable author statement /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // non-traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0035067 // negative regulation of histone acetylation // traceable author statement /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0043524 // negative regulation of neuron apoptotic process // inferred from genetic interaction /// 0045446 // endothelial cell differentiation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050790 // regulation of catalytic activity // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0004864 // protein phosphatase inhibitor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // traceable author statement /// 0042393 // histone binding // traceable author statement 4.23 532.11 0.09 0.93 0.94 -4.62
201769_at 201769_at NM_014666 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014666.1 /DEF=Homo sapiens KIAA0171 gene product (KIAA0171), mRNA. /FEA=mRNA /GEN=KIAA0171 /PROD=KIAA0171 gene product /DB_XREF=gi:7661967 /UG=Hs.155623 KIAA0171 gene product /FL=gb:D79993.1 gb:BC004467.1 gb:NM_014666.1 NM_014666 clathrin interactor 1 CLINT1 9685 NM_001195555 /// NM_001195556 /// NM_014666 0006892 // post-Golgi vesicle-mediated transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0061024 // membrane organization // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from physical interaction -3.20 330.95 -0.09 0.93 0.95 -4.62
206323_x_at 206323_x_at NM_002547 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002547.1 /DEF=Homo sapiens oligophrenin 1 (OPHN1), mRNA. /FEA=mRNA /GEN=OPHN1 /PROD=oligophrenin 1, Rho-GTPase acivating protein /DB_XREF=gi:4505506 /UG=Hs.128824 oligophrenin 1 /FL=gb:NM_002547.1 NM_002547 oligophrenin 1 OPHN1 4983 NM_002547 /// XM_005262270 /// XM_006724652 /// XM_006724653 0006897 // endocytosis // inferred from electronic annotation /// 0006930 // substrate-dependent cell migration, cell extension // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007399 // nervous system development // traceable author statement /// 0007411 // axon guidance // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0032321 // positive regulation of Rho GTPase activity // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // traceable author statement /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043195 // terminal bouton // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from direct assay /// 0035255 // ionotropic glutamate receptor binding // inferred from electronic annotation -7.98 367.26 -0.08 0.94 0.95 -4.62
217092_x_at 217092_x_at AL031589 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL031589 /DEF=Human DNA sequence from clone RP6-11O7 on chromosome 22 Contains an RPL7 (60S Ribosomal Protein L7) pseudogene, part of a putative novel gene, ESTs and GSSs /FEA=CDS /DB_XREF=gi:4914506 /UG=Hs.247871 Human DNA sequence from clone RP6-11O7 on chromosome 22 Contains an RPL7 (60S Ribosomal Protein L7) pseudogene, part of a putative novel gene, ESTs and GSSs AL031589 /// ribosomal protein L7 pseudogene 52 RP6-11O7.2 /// RPL7P52 -7.48 560.86 -0.08 0.94 0.95 -4.62
216383_at 216383_at U52111 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:U52111 /DEF=Homo sapiens X28 region near ALD locus containing dual specificity phosphatase 9 (DUSP9), ribosomal protein L18a (RPL18a), Ca2+Calmodulin-dependent protein kinase I (CAMKI), creatine transporter (CRTR), CDM protein (CDM), adrenoleukodystrophy pro... /FEA=mRNA_2 /DB_XREF=gi:8331754 /UG=Hs.283952 Homo sapiens X28 region near ALD locus containing dual specificity phosphatase 9 (DUSP9), ribosomal protein L18a (RPL18a), Ca2+Calmodulin-dependent protein kinase I (CAMKI), creatine transporter (CRTR), CDM protein (CDM), adrenoleukodystrophy protein (AL U52111 ribosomal protein L18a pseudogene 16 /// RPL18AP16 /// RPL18AP16 3.30 122.20 0.08 0.94 0.95 -4.62
203484_at 203484_at NM_014302 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_014302.1 /DEF=Homo sapiens Sec61 gamma (SEC61G), mRNA. /FEA=mRNA /GEN=SEC61G /PROD=Sec61 gamma /DB_XREF=gi:7657545 /UG=Hs.9950 Sec61 gamma /FL=gb:AF054184.1 gb:NM_014302.1 NM_014302 Sec61 gamma subunit SEC61G 23480 NM_001012456 /// NM_014302 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006412 // translation // traceable author statement /// 0006605 // protein targeting // inferred from electronic annotation /// 0006614 // SRP-dependent cotranslational protein targeting to membrane // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0010467 // gene expression // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0045047 // protein targeting to ER // inferred from sequence or structural similarity /// 0071806 // protein transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation 0008565 // protein transporter activity // inferred from sequence or structural similarity /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation -3.95 784.25 -0.07 0.94 0.96 -4.62
201031_s_at 201031_s_at NM_005520 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_005520.1 /DEF=Homo sapiens heterogeneous nuclear ribonucleoprotein H1 (H) (HNRPH1), mRNA. /FEA=mRNA /GEN=HNRPH1 /PROD=heterogeneous nuclear ribonucleoprotein H1 (H) /DB_XREF=gi:5031752 /UG=Hs.245710 heterogeneous nuclear ribonucleoprotein H1 (H) /FL=gb:BC001348.1 gb:L22009.1 gb:NM_005520.1 NM_005520 heterogeneous nuclear ribonucleoprotein H1 (H) HNRNPH1 3187 NM_001257293 /// NM_005520 /// XM_005265895 /// XM_005265896 /// XM_005265901 /// XM_005265902 /// XM_005265903 /// XM_006714862 /// XM_006714863 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // traceable author statement /// 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0043484 // regulation of RNA splicing // inferred from direct assay 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // traceable author statement /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008266 // poly(U) RNA binding // traceable author statement /// 0044822 // poly(A) RNA binding // inferred from direct assay 5.60 859.48 0.07 0.95 0.96 -4.62
208091_s_at 208091_s_at NM_030796 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_030796.1 /DEF=Homo sapiens hypothetical protein DKFZp564K0822 (DKFZP564K0822), mRNA. /FEA=mRNA /GEN=DKFZP564K0822 /PROD=hypothetical protein DKFZp564K0822 /DB_XREF=gi:13540577 /FL=gb:NM_030796.1 NM_030796 vesicular, overexpressed in cancer, prosurvival protein 1 VOPP1 81552 NM_001284282 /// NM_001284283 /// NM_001284284 /// NM_030796 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype 0005768 // endosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0031301 // integral component of organelle membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004871 // signal transducer activity // inferred from mutant phenotype -4.35 490.57 -0.07 0.95 0.96 -4.62
201400_at 201400_at NM_002795 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_002795.1 /DEF=Homo sapiens proteasome (prosome, macropain) subunit, beta type, 3 (PSMB3), mRNA. /FEA=mRNA /GEN=PSMB3 /PROD=proteasome (prosome, macropain) subunit, betatype, 3 /DB_XREF=gi:4506196 /UG=Hs.82793 proteasome (prosome, macropain) subunit, beta type, 3 /FL=gb:NM_002795.1 gb:D26598.1 NM_002795 proteasome (prosome, macropain) subunit, beta type, 3 PSMB3 5691 NM_002795 /// NR_104194 /// NR_104195 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0000209 // protein polyubiquitination // traceable author statement /// 0000278 // mitotic cell cycle // traceable author statement /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // traceable author statement /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006521 // regulation of cellular amino acid metabolic process // traceable author statement /// 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0010467 // gene expression // traceable author statement /// 0016032 // viral process // traceable author statement /// 0016070 // RNA metabolic process // traceable author statement /// 0016071 // mRNA metabolic process // traceable author statement /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // traceable author statement /// 0034641 // cellular nitrogen compound metabolic process // traceable author statement /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // traceable author statement /// 0042981 // regulation of apoptotic process // traceable author statement /// 0043066 // negative regulation of apoptotic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051439 // regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // traceable author statement /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation -4.30 633.75 -0.07 0.95 0.96 -4.62
212639_x_at 212639_x_at AL581768 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL581768 /FEA=EST /DB_XREF=gi:12949093 /DB_XREF=est:AL581768 /CLONE=CS0DG007YA06 (3 prime) /UG=Hs.272897 Tubulin, alpha, brain-specific AL581768 tubulin, alpha 1b TUBA1B 10376 NM_006082 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000278 // mitotic cell cycle // traceable author statement /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006457 // protein folding // traceable author statement /// 0007017 // microtubule-based process // traceable author statement /// 0030705 // cytoskeleton-dependent intracellular transport // traceable author statement /// 0044267 // cellular protein metabolic process // traceable author statement /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051301 // cell division // traceable author statement /// 0071353 // cellular response to interleukin-4 // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // traceable author statement /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0036464 // cytoplasmic ribonucleoprotein granule // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 24.80 4807.25 0.06 0.95 0.96 -4.62
201262_s_at 201262_s_at NM_001711 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_001711.1 /DEF=Homo sapiens biglycan (BGN), mRNA. /FEA=mRNA /GEN=BGN /PROD=biglycan /DB_XREF=gi:4502402 /UG=Hs.821 biglycan /FL=gb:BC002416.1 gb:BC004244.1 gb:J04599.1 gb:NM_001711.1 NM_001711 biglycan BGN 633 NM_001711 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // inferred from electronic annotation /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0030206 // chondroitin sulfate biosynthetic process // traceable author statement /// 0030207 // chondroitin sulfate catabolic process // traceable author statement /// 0030208 // dermatan sulfate biosynthetic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005622 // intracellular // inferred from electronic annotation /// 0005796 // Golgi lumen // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0030133 // transport vesicle // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005201 // extracellular matrix structural constituent // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation 3.00 220.60 0.06 0.95 0.96 -4.62
217719_at 217719_at NM_016091 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank gb:NM_016091.1 /DEF=Homo sapiens HSPC025 (HSPC025), mRNA. /FEA=mRNA /GEN=HSPC025 /PROD=HSPC025 /DB_XREF=gi:7705432 /UG=Hs.119503 HSPC025 /FL=gb:BC001101.1 gb:AF077207.1 gb:AF083243.1 gb:NM_016091.1 NM_016091 eukaryotic translation initiation factor 3, subunit L EIF3L 51386 NM_001242923 /// NM_016091 /// XM_005261625 /// XM_006724260 0001731 // formation of translation preinitiation complex // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred by curator /// 0006413 // translational initiation // inferred from direct assay /// 0006446 // regulation of translational initiation // inferred from electronic annotation 0001650 // fibrillar center // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016282 // eukaryotic 43S preinitiation complex // inferred from electronic annotation /// 0033290 // eukaryotic 48S preinitiation complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred by curator /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0044822 // poly(A) RNA binding // inferred from direct assay 3.53 1349.24 0.06 0.96 0.97 -4.62
212038_s_at 212038_s_at AL515918 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AL515918 /FEA=EST /DB_XREF=gi:12779411 /DB_XREF=est:AL515918 /CLONE=CS0DA001YJ18 (3 prime) /UG=Hs.149155 voltage-dependent anion channel 1 AL515918 voltage-dependent anion channel 1 VDAC1 7416 NM_003374 /// NR_036624 /// NR_036625 /// XM_005272075 0001662 // behavioral fear response // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007270 // neuron-neuron synaptic transmission // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0044070 // regulation of anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay /// 0046930 // pore complex // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008308 // voltage-gated anion channel activity // inferred from sequence or structural similarity /// 0008308 // voltage-gated anion channel activity // traceable author statement /// 0015288 // porin activity // inferred from electronic annotation 3.88 709.39 0.04 0.97 0.97 -4.62
212426_s_at 212426_s_at BF033313 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:BF033313 /FEA=EST /DB_XREF=gi:10741025 /DB_XREF=est:601458002F1 /CLONE=IMAGE:3861457 /UG=Hs.74405 tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, theta polypeptide BF033313 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta YWHAQ 10971 NM_006826 0006605 // protein targeting // inferred from electronic annotation /// 0006915 // apoptotic process // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0021762 // substantia nigra development // inferred from expression pattern /// 0045892 // negative regulation of transcription, DNA-templated // inferred from direct assay /// 0061024 // membrane organization // traceable author statement /// 0097193 // intrinsic apoptotic signaling pathway // traceable author statement /// 1900740 // positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // traceable author statement /// 0043234 // protein complex // inferred from physical interaction /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 8.00 1201.45 0.03 0.97 0.98 -4.62
201654_s_at 201654_s_at AI991033 Homo sapiens Oct 6, 2014 Consensus sequence GenBank Consensus includes gb:AI991033 /FEA=EST /DB_XREF=gi:5837930 /DB_XREF=est:wu36a08.x1 /CLONE=IMAGE:2522102 /UG=Hs.211573 heparan sulfate proteoglycan 2 (perlecan) /FL=gb:M85289.1 gb:NM_005529.2 AI991033 heparan sulfate proteoglycan 2 HSPG2 3339 NM_001291860 /// NM_005529 /// XM_005245863 /// XM_006710594 /// XM_006710595 /// XM_006710596 /// XM_006710597 /// XM_006710598 0001523 // retinoid metabolic process // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006024 // glycosaminoglycan biosynthetic process // traceable author statement /// 0006027 // glycosaminoglycan catabolic process // traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007603 // phototransduction, visible light // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // traceable author statement /// 0030198 // extracellular matrix organization // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0030204 // chondroitin sulfate metabolic process // traceable author statement /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005796 // Golgi lumen // traceable author statement /// 0005886 // plasma membrane // traceable author statement /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0043202 // lysosomal lumen // traceable author statement /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation -3.05 639.27 -0.03 0.98 0.98 -4.62